RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for F13B (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026368

Ensembl transcript IDs: ENSMUST00000027615.7

Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAGACCAGCCATTAGCCTaGCACTCTGCTTCCCCAGTC +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARDQPLA*HSASPV
Trigger: GACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTC...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATATCAACGGAGGGTGGTTaGTCGCAGGCTACCTTCTCC +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFISTEGG*SQATFS
Trigger: GGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGA...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAGTAGCACCTTGGGTTTaGAGACCAGCCTTCTGCTGT +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARVAPWV*RPAFCC
Trigger: ACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTAC...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTGGAGACCAGCCTTCTaGTGTGCACCTGATTTGCTC +
Preference number: 4 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLWRPAF*CAPDLL
Trigger: GAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCA...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGCTTCTGCTGTGCACCTaGTTTGCTCTTCTTGCTTCC +
Preference number: 4 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLLLLCT*FALLAS
Trigger: GGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAG...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATCTCTTGTTCTTTCCTaGAGGACGGTTGAGAAGACC +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARSLVLS*RTVEKT
Trigger: GGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGA...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATAATTCTCAACGGAGGGTaGTTGCTCGCAGGCTACCTT +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFIILNGG*LLAGYL
Trigger: AAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAAT...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAAGTGGTTTTGTATCCTaGAGAGCAACCGTAGCTCAT +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARSGFVS*RATVAH
Trigger: ATGAGCTACGGTTGCTCTTCAGGATACAAAACCACT...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGGCTGTGCACCTGATTTaGTCTTCTTGCTTCCCACTT +
Preference number: 4 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLAVHLI*SSCFPL
Trigger: AAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGC...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATACTCAGAGTGTGGGTGTaGAACACCATTCTCAACGGA +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFILRVWV*NTILNG
Trigger: TCCGTTGAGAATGGTGTTGCACACCCACACTCTGAG...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAGTAAATCTCAGAGTGTaGGTGTGCAACACCATTCTC +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARVNLRV*VCNTIL
Trigger: GAGAATGGTGTTGCACACCCACACTCTGAGATTTAC...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATACTATGTCCTTCACTTTaGATGTTCTCTGCGTCGTGG +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFILCPSL*MFSASW
Trigger: CCACGACGCAGAGAACATTCAAAGTGAAGGACATAG...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATAGCAAGTTATCGTACTTaGTCCTCTGAGACTGTAGCC +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFIASYRT*SSETVA
Trigger: GGCTACAGTCTCAGAGGATCAAGTACGATAACTTGC...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATAACACCGGTATTCTACTaGGGAGCCGTTTTCATAGGT +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFITPVFY*GAVFIG
Trigger: ACCTATGAAAACGGCTCCTCAGTAGAATACCGGTGT...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATATTTCTTGTAGCACCTTaGGTTTGGAGACCAGCCTTC +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFIFLVAP*VWRPAF
Trigger: GAAGGCTGGTCTCCAAACCCAAGGTGCTACAAGAAA...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCTTCCTTCACATATaGGAGATTCTGGATACCAGC +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARFFLHI*EILDTS
Trigger: GCTGGTATCCAGAATCTCCCATATGTGAAGGAAGAA...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTCCATTTCTTATCACTaGAGGAGATGCACACATCCC +
Preference number: 4 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLSISYH*RRCTHP
Trigger: GGGATGTGTGCATCTCCTCCAGTGATAAGAAATGGA...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAACAGAGCAGTTCTTCTaGACCCTGAATCACAAAATT +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARTEQFF*TLNHKI
Trigger: AATTTTGTGATTCAGGGTTCAGAAGAACTGCTCTGT...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATAATAGGTGCGGGCTGCTaGACTAACAATATCTCCATT +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFIIGAGC*TNNISI
Trigger: AATGGAGATATTGTTAGTTCAGCAGCCCGCACCTAT...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATACTGATTTGCTCTTCTTaGTTCCCACTTTCGGTTGCA +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFILICSS*FPLSVA
Trigger: TGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAG...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTCCTCAATACATTTTaGAGGTTCTGTCCACTTCCC +
Preference number: 4 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLFLNTF*RFCPLP
Trigger: GGGAAGTGGACAGAACCTCCAAAATGTATTGAGGAA...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGGACCCTTGTAGGAAATaGTTATCAAAACACCGGTAT +
Preference number: 4 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLDPCRK*LSKHRY
Trigger: ATACCGGTGTTTTGATAATCATTTCCTACAAGGGTC...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAACTCTCCATGTAAAATaGGTGGTCTGTTGTCAAAAT +
Preference number: 4 (lower is better)
Translates to: KAQNTELSGVFLKLFYARTLHVK*VVCCQN
Trigger: ATTTTGACAACAGACCACTCATTTTACATGGAGAGT...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR GCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATATATCACTGGAGGAGATaGACACATCCCTTTAGATTC +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFIYHWRR*THPFRF
Trigger: GAATCTAAAGGGATGTGTGCATCTCCTCCAGTGATA...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR TCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATAGTGACGGTAAGTTGTTaGATGTGGTTGAATTTTAGA +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFIVTVSC*MWLNFR
Trigger: TCTAAAATTCAACCACATTCAACAACTTACCGTCAC...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CCA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATAACATATGGGAGATTCTaGATACCAGCCAAAGTTATA +
Preference number: 4 (lower is better)
Translates to: QNTELSGVFLKLFYARFITYGRF*IPAKVI
Trigger: TATAACTTTGGCTGGTATCCAGAATCTCCCATATGT...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 90 bp TTTGTTGCACTGTGGTGTGAGGGACCAGCCATTAGCCTGGCACTCTaGTTCCCCAGTCTGCTTCCCTGTAGTGGTGTAGTAGCCTGCAGT +
Preference number: 5 (lower is better)
Translates to: FVALWCEGPAISLAL*FPSLLPCSGVVACS
Trigger: ACTGCAGGCTACTACACCACTACAGGGAAGCAGACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTCCCTCACACCACAGTGCAACAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 90 bp AACTCAGGGGCCAAACATGTCTCTTGTTCTTTCCTGCAGGACGGTTaGGAAGACCACCCTGCAGAAAGACAGTGGACCACCTCCTCGTCC +
Preference number: 5 (lower is better)
Translates to: NSGAKHVSCSFLQDG*EDHPAERQWTTSSS
Trigger: GGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGCCCCTGAGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 90 bp ACATGTCTCTTGTTCTTTCCTGCAGGACGGTTGAGAAGACCACCCTaGAGAAAGACAGTGGACCACCTCCTCGTCCTTTCCCCCAGTGGT +
Preference number: 5 (lower is better)
Translates to: TCLLFFPAGRLRRPP*RKTVDHLLVLSPSG
Trigger: ACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 90 bp CTCAGGGGGCAGTGTCCATCGGCCACGATTGCAAGTTATCGTACTTaGTCCTCTGAGACTGTAGCCCCCTCCACACCTGTATGTCACTTT +
Preference number: 5 (lower is better)
Translates to: LRGQCPSATIASYRT*SSETVAPSTPVCHF
Trigger: AAAGTGACATACAGGTGTGGAGGGGGCTACAGTCTCAGAGGATCAAGTACGATAACTTGCAATCGTGGCCGATGGACACTGCCCCCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 90 bp TCTTGTAGCACCTTGGGTTTGGAGACCAGCCTTCTGCTGTGCACCTaGTTTGCTCTTCTTGCTTCCCACTTTCGGTTGCATAGCCAGCCA +
Preference number: 5 (lower is better)
Translates to: SCSTLGLETSLLLCT*FALLASHFRLHSQP
Trigger: TGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 90 bp GCAGTGTCCATCGGCCACGATTGCAAGTTATCGTACTTGATCCTCTaGGACTGTAGCCCCCTCCACACCTGTATGTCACTTTATCCCCAC +
Preference number: 5 (lower is better)
Translates to: AVSIGHDCKLSYLIL*DCSPLHTCMSLYPH
Trigger: GTGGGGATAAAGTGACATACAGGTGTGGAGGGGGCTACAGTCTCAGAGGATCAAGTACGATAACTTGCAATCGTGGCCGATGGACACTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CCA 90 bp ACCCTGCAGAAAGACAGTGGACCACCTCCTCGTCCTTTCCCCCAGTaGTTTTGTATCCTGAAGAGCAACCGTAGCTCATCCTCTCTTGAA +
Preference number: 5 (lower is better)
Translates to: TLQKDSGPPPRPFPQ*FCILKSNRSSSSLE
Trigger: TTCAAGAGAGGATGAGCTACGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 90 bp TTCCATGTTCCAACTCAGGGGCCAAACATGTCTCTTGTTCTTTCCTaGAGGACGGTTGAGAAGACCACCCTGCAGAAAGACAGTGGACCA +
Preference number: 5 (lower is better)
Translates to: FHVPTQGPNMSLVLS*RTVEKTTLQKDSGP
Trigger: TGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGCCCCTGAGTTGGAACATGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 90 bp ACAGTGGACCACCTCCTCGTCCTTTCCCCCAGTGGTTTTGTATCCTaGAGAGCAACCGTAGCTCATCCTCTCTTGAAGTTTGTACAGTAC +
Preference number: 5 (lower is better)
Translates to: TVDHLLVLSPSGFVS*RATVAHPLLKFVQY
Trigger: GTACTGTACAAACTTCAAGAGAGGATGAGCTACGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 90 bp GCACTCTGCTTCCCCAGTCTGCTTCCCTGTAGTGGTGTAGTAGCCTaGAGTGCATGTGTAAGCCACTATGTCCTTCACTTTGAATGTTCT +
Preference number: 5 (lower is better)
Translates to: ALCFPSLLPCSGVVA*SACVSHYVLHFECS
Trigger: AGAACATTCAAAGTGAAGGACATAGTGGCTTACACATGCACTGCAGGCTACTACACCACTACAGGGAAGCAGACTGGGGAAGCAGAGTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 90 bp ATCTCAGAGTGTGGGTGTGCAACACCATTCTCAACGGAGGGTGGTTaGTCGCAGGCTACCTTCTCCTTTTCCTCAATACATTTTGGAGGT +
Preference number: 5 (lower is better)
Translates to: ISECGCATPFSTEGG*SQATFSFSSIHFGG
Trigger: ACCTCCAAAATGTATTGAGGAAAAGGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCACACTCTGAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CCA 90 bp GTAAATCTCAGAGTGTGGGTGTGCAACACCATTCTCAACGGAGGGTaGTTGCTCGCAGGCTACCTTCTCCTTTTCCTCAATACATTTTGG +
Preference number: 5 (lower is better)
Translates to: VNLRVWVCNTILNGG*LLAGYLLLFLNTFW
Trigger: CCAAAATGTATTGAGGAAAAGGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCACACTCTGAGATTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 90 bp TGTAGTAGCCTGCAGTGCATGTGTAAGCCACTATGTCCTTCACTTTaGATGTTCTCTGCGTCGTGGAGTAATTTCCATGTTCCAACTCAG +
Preference number: 5 (lower is better)
Translates to: CSSLQCMCKPLCPSL*MFSASWSNFHVPTQ
Trigger: CTGAGTTGGAACATGGAAATTACTCCACGACGCAGAGAACATTCAAAGTGAAGGACATAGTGGCTTACACATGCACTGCAGGCTACTACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp CAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTCATACTCAACGGAGGGTGGTaGCTCGCAGGCTACCTTCTC +
Preference number: 5 (lower is better)
Translates to: QNTELSGVFLKLFYARFILNGGW*LAGYLL
Trigger: GAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAG...TATGAATCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTGTAGCACCTTGGGTTaGGAGACCAGCCTTCTGCTG +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLCSTLG*ETSLLL
Trigger: CAGCAGAAGGCTGGTCTCCAAACCCAAGGTGCTACA...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CCA 90 bp AACCGTAGCTCATCCTCTCTTGAAGTTTGTACAGTACTTTGTCATTaGAGACGTAGCCATTCCTTAGGTCAGGCTTCAGACATTTCTTGT +
Preference number: 5 (lower is better)
Translates to: NRSSSSLEVCTVLCH*RRSHSLGQASDISC
Trigger: ACAAGAAATGTCTGAAGCCTGACCTAAGGAATGGCTACGTCTCCAATGACAAAGTACTGTACAAACTTCAAGAGAGGATGAGCTACGGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATGCTGTGCACCTGATTaGCTCTTCTTGCTTCCCACT +
Preference number: 5 (lower is better)
Translates to: KAQNTELSGVFLKLFYARCCAPD*LFLLPT
Trigger: AGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCA...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGGGCCAAACATGTCTCTaGTTCTTTCCTGCAGGACGG +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLGQTCL*FFPAGR
Trigger: CCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGCC...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGCAACAACCACACCGTTaGCTATGTCAGGAGGAGGCT +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLQQPHR*LCQEEA
Trigger: AGCCTCCTCCTGACATAGCAAACGGTGTGGTTGTTG...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 90 bp GCAGATATCTCCGACAGTGGGATTGATGGTGACAAGTTATATCCCTaGTTACACACAAAATCTATTAGGTCTCCATGTAAAATCTTGCCC +
Preference number: 5 (lower is better)
Translates to: ADISDSGIDGDKLYP*LHTKSIRSPCKILP
Trigger: GGGCAAGATTTTACATGGAGACCTAATAGATTTTGTGTGTAAGCAGGGATATAACTTGTCACCATCAATCCCACTGTCGGAGATATCTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGCCTGATTTGCTCTTCTaGCTTCCCACTTTCGGTTGC +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLPDLLF*LPTFGC
Trigger: GCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGG...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGAGAGCACATTAATTTGTaGCACTGTGGTGTGAGGGAC +
Preference number: 5 (lower is better)
Translates to: KAQNTELSGVFLKLFYAREHINL*HCGVRD
Trigger: GTCCCTCACACCACAGTGCAACAAATTAATGTGCTC...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGATTTCTTGTAGCACCTaGGGTTTGGAGACCAGCCTT +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLISCST*GLETSL
Trigger: AAGGCTGGTCTCCAAACCCAAGGTGCTACAAGAAAT...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGACTATGTCCTTCACTTaGAATGTTCTCTGCGTCGTG +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLTMSFT*NVLCVV
Trigger: CACGACGCAGAGAACATTCAAAGTGAAGGACATAGT...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp AAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGTTTTATGCGAGATTTCCTCAATACATTTaGGAGGTTCTGTCCACTTCC +
Preference number: 5 (lower is better)
Translates to: KAQNTELSGVFLKLFYARFPQYI*EVLSTS
Trigger: GGAAGTGGACAGAACCTCCAAAATGTATTGAGGAAA...TCTCGCATAAAACAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS-3UTR CAA 90 bp TATGCAAAAGTAAAGGCTCAGAACACTGAACTTAGTGGAGTCTTCCTAAAATTGGTAGCTCATCCTCTCTaGAAGTTTGTACAGTACTTT +
Preference number: 5 (lower is better)
Translates to: YAKVKAQNTELSGVFLKLVAHPL*KFVQYF
Trigger: AAAGTACTGTACAAACTTCAAGAGAGGATGAGCTAC...CAATTTTAGGAAGACTCCACTAAGTTCAGTGTTCTGAGCCTTTACTTTTGCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp CTGTGGTGTGAGGGACCAGCCATTAGCCTGGCACTCTaGTTCCCCAGTCTGCTTCCCTGTAGTGGTGTAGTA +
Preference number: 6 (lower is better)
Translates to: LWCEGPAISLAL*FPSLLPCSGVV
Trigger: TACTACACCACTACAGGGAAGCAGACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTCCCTCACACCACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CCA 72 bp TTGTTGCACTGTGGTGTGAGGGACCAGCCATTAGCCTaGCACTCTGCTTCCCCAGTCTGCTTCCCTGTAGTG +
Preference number: 6 (lower is better)
Translates to: LLHCGVRDQPLA*HSASPVCFPVV
Trigger: CACTACAGGGAAGCAGACTGGGGAAGCAGAGTGCCAGGCTAATGGCTGGTCCCTCACACCACAGTGCAACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 90 bp CAACTCAGGGGCCAAACATGTCTCTTGTTCTTTCCTGCAGGACGGTaGAGAAGACCACCCTGCAGAAAGACAGTGGACCACCTCCTCGTC +
Preference number: 6 (lower is better)
Translates to: QLRGQTCLLFFPAGR*RRPPCRKTVDHLLV
Trigger: GACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGCCCCTGAGTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp TTGTTCTTTCCTGCAGGACGGTTGAGAAGACCACCCTaGAGAAAGACAGTGGACCACCTCCTCGTCCTTTCC +
Preference number: 6 (lower is better)
Translates to: LFFPAGRLRRPP*RKTVDHLLVLS
Trigger: GGAAAGGACGAGGAGGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 72 bp GCCAAACATGTCTCTTGTTCTTTCCTGCAGGACGGTTaGGAAGACCACCCTGCAGAAAGACAGTGGACCACC +
Preference number: 6 (lower is better)
Translates to: AKHVSCSFLQDG*EDHPAERQWTT
Trigger: GGTGGTCCACTGTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 72 bp ATCAATAGTGCAGGGCTCCAAGCAGACAGGTGGAGATaGCCACGCTCCTTGTTCACAGCGAGATGTTTCCGA +
Preference number: 6 (lower is better)
Translates to: INSAGLQADRWR*PRSLFTARCFR
Trigger: TCGGAAACATCTCGCTGTGAACAAGGAGCGTGGTCATCTCCACCTGTCTGCTTGGAGCCCTGCACTATTGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp CCAACTCAGGGGCCAAACATGTCTCTTGTTCTTTCCTaGAGGACGGTTGAGAAGACCACCCTGCAGAAAGAC +
Preference number: 6 (lower is better)
Translates to: PTQGPNMSLVLS*RTVEKTTLQKD
Trigger: GTCTTTCTGCAGGGTGGTCTTCTCAACCGTCCTGCAGGAAAGAACAAGAGACATGTTTGGCCCCTGAGTTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CCA 72 bp AAAGACAGTGGACCACCTCCTCGTCCTTTCCCCCAGTaGTTTTGTATCCTGAAGAGCAACCGTAGCTCATCC +
Preference number: 6 (lower is better)
Translates to: KDSGPPPRPFPQ*FCILKSNRSSS
Trigger: GGATGAGCTACGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTGGTCCACTGTCTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 72 bp GTGTGGGTGTGCAACACCATTCTCAACGGAGGGTGGTaGCTCGCAGGCTACCTTCTCCTTTTCCTCAATACA +
Preference number: 6 (lower is better)
Translates to: VWVCNTILNGGW*LAGYLLLFLNT
Trigger: TGTATTGAGGAAAAGGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 72 bp ACCTTGGGTTTGGAGACCAGCCTTCTGCTGTGCACCTaGTTTGCTCTTCTTGCTTCCCACTTTCGGTTGCAT +
Preference number: 6 (lower is better)
Translates to: TLGLETSLLLCT*FALLASHFRLH
Trigger: ATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCTCCAAACCCAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp TGTGGGTGTGCAACACCATTCTCAACGGAGGGTGGTTaGTCGCAGGCTACCTTCTCCTTTTCCTCAATACAT +
Preference number: 6 (lower is better)
Translates to: CGCATPFSTEGG*SQATFSFSSIH
Trigger: ATGTATTGAGGAAAAGGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 72 bp AGACCAGCCTTCTGCTGTGCACCTGATTTGCTCTTCTaGCTTCCCACTTTCGGTTGCATAGCCAGCCAAACA +
Preference number: 6 (lower is better)
Translates to: RPAFCCAPDLLF*LPTFGCIASQT
Trigger: TGTTTGGCTGGCTATGCAACCGAAAGTGGGAAGCAAGAAGAGCAAATCAGGTGCACAGCAGAAGGCTGGTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 90 bp AATCTCAGAGTGTGGGTGTGCAACACCATTCTCAACGGAGGGTGGTaGCTCGCAGGCTACCTTCTCCTTTTCCTCAATACATTTTGGAGG +
Preference number: 6 (lower is better)
Translates to: NLRVWVCNTILNGGW*LAGYLLLFLNTFWR
Trigger: CCTCCAAAATGTATTGAGGAAAAGGAGAAGGTAGCCTGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCACACTCTGAGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 72 bp CACCTCCTCGTCCTTTCCCCCAGTGGTTTTGTATCCTaGAGAGCAACCGTAGCTCATCCTCTCTTGAAGTTT +
Preference number: 6 (lower is better)
Translates to: HLLVLSPSGFVS*RATVAHPLLKF
Trigger: AAACTTCAAGAGAGGATGAGCTACGGTTGCTCTTCAGGATACAAAACCACTGGGGGAAAGGACGAGGAGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp TTCCCCAGTCTGCTTCCCTGTAGTGGTGTAGTAGCCTaGAGTGCATGTGTAAGCCACTATGTCCTTCACTTT +
Preference number: 6 (lower is better)
Translates to: FPSLLPCSGVVA*SACVSHYVLHF
Trigger: AAAGTGAAGGACATAGTGGCTTACACATGCACTGCAGGCTACTACACCACTACAGGGAAGCAGACTGGGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp TTTATCCCCACTGTAGTAAATCTCAGAGTGTGGGTGTaGAACACCATTCTCAACGGAGGGTGGTTGCTCGCA +
Preference number: 6 (lower is better)
Translates to: FIPTVVNLRVWV*NTILNGGWLLA
Trigger: TGCGAGCAACCACCCTCCGTTGAGAATGGTGTTGCACACCCACACTCTGAGATTTACTACAGTGGGGATAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp GTACACTTAGGGTATTTCAGCCTTCCCCTGTCACACTaGACCCGAAGTACAGACCCAGCAATAGATGTCTCA +
Preference number: 6 (lower is better)
Translates to: VHLGYFSLPLSH*TRSTDPAIDVS
Trigger: TGAGACATCTATTGCTGGGTCTGTACTTCGGGTGCAGTGTGACAGGGGAAGGCTGAAATACCCTAAGTGTAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS TCA 72 bp CTGCAGTGCATGTGTAAGCCACTATGTCCTTCACTTTaGATGTTCTCTGCGTCGTGGAGTAATTTCCATGTT +
Preference number: 6 (lower is better)
Translates to: LQCMCKPLCPSL*MFSASWSNFHV
Trigger: AACATGGAAATTACTCCACGACGCAGAGAACATTCAAAGTGAAGGACATAGTGGCTTACACATGCACTGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CCA 72 bp TCATCCTCTCTTGAAGTTTGTACAGTACTTTGTCATTaGAGACGTAGCCATTCCTTAGGTCAGGCTTCAGAC +
Preference number: 6 (lower is better)
Translates to: SSSLEVCTVLCH*RRSHSLGQASD
Trigger: GTCTGAAGCCTGACCTAAGGAATGGCTACGTCTCCAATGACAAAGTACTGTACAAACTTCAAGAGAGGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 90 bp TCACATCGCCTCTATTGCACTGCGCAGATATCTCCGACAGTGGGATaGATGGTGACAAGTTATATCCCTGCTTACACACAAAATCTATTA +
Preference number: 6 (lower is better)
Translates to: SHRLYCTAQISPTVG*MVTSYIPAYTQNLL
Trigger: TAATAGATTTTGTGTGTAAGCAGGGATATAACTTGTCACCATCAATCCCACTGTCGGAGATATCTGCGCAGTGCAATAGAGGCGATGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 72 bp TGTAACTTGCCAGTAACCCATCAACAACCACACCGTTaGCTATGTCAGGAGGAGGCTTACAATTCTCAATAT +
Preference number: 6 (lower is better)
Translates to: CNLPVTHQQPHR*LCQEEAYNSQY
Trigger: ATATTGAGAATTGTAAGCCTCCTCCTGACATAGCAAACGGTGTGGTTGTTGATGGGTTACTGGCAAGTTACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 90 bp ATCCTGTTGTGTAACTTGCCAGTAACCCATCAACAACCACACCGTTaGCTATGTCAGGAGGAGGCTTACAATTCTCAATATTTTCAACAC +
Preference number: 6 (lower is better)
Translates to: ILLCNLPVTHQQPHR*LCQEEAYNSQYFQH
Trigger: GTGTTGAAAATATTGAGAATTGTAAGCCTCCTCCTGACATAGCAAACGGTGTGGTTGTTGATGGGTTACTGGCAAGTTACACAACAGGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS CAA 72 bp CCATTTTCTATTAATCTCAAAGAAGAGCACATTAATTaGTTGCACTGTGGTGTGAGGGACCAGCCATTAGCC +
Preference number: 6 (lower is better)
Translates to: PFSINLKEEHIN*LHCGVRDQPLA
Trigger: GGCTAATGGCTGGTCCCTCACACCACAGTGCAACAAATTAATGTGCTCTTCTTTGAGATTAATAGAAAATGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7
CDS GCA 72 bp TCCGACAGTGGGATTGATGGTGACAAGTTATATCCCTaGTTACACACAAAATCTATTAGGTCTCCATGTAAA +
Preference number: 6 (lower is better)
Translates to: SDSGIDGDKLYP*LHTKSIRSPCK
Trigger: TTTACATGGAGACCTAATAGATTTTGTGTGTAAGCAGGGATATAACTTGTCACCATCAATCCCACTGTCGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027615.7