RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for F13A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039109

Ensembl transcript IDs: ENSMUST00000037491.11, ENSMUST00000164727.8

Found 186 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTaGTCTGTGGAGCTACAGCCATTTGCAATGATAAATGATGACTTT +
Preference number: 1 (lower is better)
Translates to: EARYWAHPSCSREAL*SVELQPFAMINDDF
Trigger: AAAGTCATCATTTATCATTGCAAATGGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR CCA 90 bp ACATCTTCTCACAAGGTAATCTGTGAAATTTGGCAGGCAGTTCCTTaGCTGCAGGTGCAAGATGAAAGACCTTTCTCTGGCTTTGCCAAG +
Preference number: 1 (lower is better)
Translates to: TSSHKVICEIWQAVP*LQVQDERPFSGFAK
Trigger: CTTGGCAAAGCCAGAGAAAGGTCTTTCATCTTGCACCTGCAGCCAAGGAACTGCCTGCCAAATTTCACAGATTACCTTGTGAGAAGATGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR GCA 90 bp GTCTCAGTCTTCACACCCAAATTAAAGCAAGAGCTAGCTATGTTTTaGATTAGAATCTCCATAGCCAAGACTGCAAGAGGCCATGTGCCC +
Preference number: 1 (lower is better)
Translates to: VSVFTPKLKQELAMF*IRISIAKTARGHVP
Trigger: GGGCACATGGCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTGCTTTAATTTGGGTGTGAAGACTGAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR TCA 90 bp TTAATAGATCTGAGCACCGCACCTGCTTTCTTATCTCCTCTTAGGTaGTTAAGTTCCCCACAAATGCAATTTGTTAATGTGGGGCCACAT +
Preference number: 1 (lower is better)
Translates to: LIDLSTAPAFLSPLR*LSSPQMQFVNVGPH
Trigger: ATGTGGCCCCACATTAACAAATTGCATTTGTGGGGAACTTAATCACCTAAGAGGAGATAAGAAAGCAGGTGCGGTGCTCAGATCTATTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCCTCCATAGCCAAGACTaGAAGAGGCCATGTGCCCCA +
Preference number: 2 (lower is better)
Translates to: SGESEFLIEARYWAHPSCLHSQD*KRPCAP
Trigger: TGGGGCACATGGCCTCTTGCAGTCTTGGCTATGGAG...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR CCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCAACGTTCAGATCCATTaGAAGGTGGAACAACTCAAA +
Preference number: 2 (lower is better)
Translates to: FLIEARYWAHPSCSREALNVQIH*KVEQLK
Trigger: TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTT...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR CCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAAAGCCCTCTGATCTGTaGAGCTACAGCCATTTGCAA +
Preference number: 2 (lower is better)
Translates to: LAFCKAESALALSTQGFRKPSDL*SYSHLQ
Trigger: TTGCAAATGGCTGTAGCTCCACAGATCAGAGGGCTT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGATTCCTTGGCTGCAGGTaGAAGATGAAAGACCTTTCT +
Preference number: 2 (lower is better)
Translates to: LAFCKAESALALSTQGFRFLGCR*KMKDLS
Trigger: AGAAAGGTCTTTCATCTTGCACCTGCAGCCAAGGAA...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR CCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAGTAATCTGTGAAATTTaGCAGGCAGTTCCTTGGCTG +
Preference number: 2 (lower is better)
Translates to: LAFCKAESALALSTQGFRVICEI*QAVPWL
Trigger: CAGCCAAGGAACTGCCTGCCAAATTTCACAGATTAC...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCGTAACGCTGGCCTTTTaGAAGGCTGAATCTGCCTTA +
Preference number: 2 (lower is better)
Translates to: PIILSVGALAHKVKDLGAVTLAF*KAESAL
Trigger: TAAGGCAGATTCAGCCTTGCAAAAGGCCAGCGTTAC...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR TCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGATATGTTACCCTTAAATaGCTGAGTGGGGAATCAGAA +
Preference number: 2 (lower is better)
Translates to: LAFCKAESALALSTQGFRYVTLK*LSGESE
Trigger: TTCTGATTCCCCACTCAGTCATTTAAGGGTAACATA...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATCTCCATAGCCAAGACTaGAAGAGGCCATGTGCCCCA +
Preference number: 2 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYLHSQD*KRPCAP
Trigger: TGGGGCACATGGCCTCTTGCAGTCTTGGCTATGGAG...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCCCAATCCCAAATCAGTaGCCTTACTTTCTAGTTCTC +
Preference number: 2 (lower is better)
Translates to: PIILSVGALAHKVKDLGAPIPNQ*PYFLVL
Trigger: GAGAACTAGAAAGTAAGGGCACTGATTTGGGATTGG...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR TCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCATAAGGATTCAATTGTaGACACCCTTTTCTTTGGAG +
Preference number: 2 (lower is better)
Translates to: PIILSVGALAHKVKDLGAIRIQL*TPFSLE
Trigger: CTCCAAAGAAAAGGGTGTTCACAATTGAATCCTTAT...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATGAGCTAGCTATGTTTTaGATTAGAATCTCCATAGCC +
Preference number: 2 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYELAMF*IRISIA
Trigger: GGCTATGGAGATTCTAATGCAAAACATAGCTAGCTC...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR-3UTR GCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAGCTAGCTATGTTTTaGATTAGAATCTCCATAGCC +
Preference number: 2 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVELAMF*IRISIA
Trigger: GGCTATGGAGATTCTAATGCAAAACATAGCTAGCTC...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR GCA 72 bp CCCTCTGTCCTTCAGTCAAGAGTAACGCTGGCCTTTTaGAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAA +
Preference number: 3 (lower is better)
Translates to: PSVLQSRVTLAF*KAESALALSTQ
Trigger: TTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAGCGTTACTCTTGACTGAAGGACAGAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR TCA 72 bp TACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTaGTCTGTGGAGCTACAGCCATTTGCAATGATAAAT +
Preference number: 3 (lower is better)
Translates to: YWAHPSCSREAL*SVELQPFAMIN
Trigger: ATTTATCATTGCAAATGGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR CCA 72 bp GGGGCCACATCTTCTCACAAGGTAATCTGTGAAATTTaGCAGGCAGTTCCTTGGCTGCAGGTGCAAGATGAA +
Preference number: 3 (lower is better)
Translates to: GATSSHKVICEI*QAVPWLQVQDE
Trigger: TTCATCTTGCACCTGCAGCCAAGGAACTGCCTGCCAAATTTCACAGATTACCTTGTGAGAAGATGTGGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR TCA 72 bp AATTTGGCAGGCAGTTCCTTGGCTGCAGGTGCAAGATaGAAGACCTTTCTCTGGCTTTGCCAAGAAGAAAAA +
Preference number: 3 (lower is better)
Translates to: NLAGSSLAAGAR*KTFLWLCQEEK
Trigger: TTTTTCTTCTTGGCAAAGCCAGAGAAAGGTCTTTCATCTTGCACCTGCAGCCAAGGAACTGCCTGCCAAATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR TCA 72 bp GAGATGACTTCATGGAGTTTTGCTTATAGAATCTGCTaGACCTCGGGGGTTAGTACTAAGTTCCCAGGAACC +
Preference number: 3 (lower is better)
Translates to: EMTSWSFAYRIC*TSGVSTKFPGT
Trigger: GGTTCCTGGGAACTTAGTACTAACCCCCGAGGTTCAGCAGATTCTATAAGCAAAACTCCATGAAGTCATCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR TCA 72 bp CTGAGCACCGCACCTGCTTTCTTATCTCCTCTTAGGTaGTTAAGTTCCCCACAAATGCAATTTGTTAATGTG +
Preference number: 3 (lower is better)
Translates to: LSTAPAFLSPLR*LSSPQMQFVNV
Trigger: CACATTAACAAATTGCATTTGTGGGGAACTTAATCACCTAAGAGGAGATAAGAAAGCAGGTGCGGTGCTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR GCA 72 bp TTCACACCCAAATTAAAGCAAGAGCTAGCTATGTTTTaGATTAGAATCTCCATAGCCAAGACTGCAAGAGGC +
Preference number: 3 (lower is better)
Translates to: FTPKLKQELAMF*IRISIAKTARG
Trigger: GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTGCTTTAATTTGGGTGTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR TCA 72 bp AACACCCTTTTCTTTGGAGAGTATGTTACCCTTAAATaGCTGAGTGGGGAATCAGAATTCTTAATTGAGGCC +
Preference number: 3 (lower is better)
Translates to: NTLFFGEYVTLK*LSGESEFLIEA
Trigger: GGCCTCAATTAAGAATTCTGATTCCCCACTCAGTCATTTAAGGGTAACATACTCTCCAAAGAAAAGGGTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR CCA 72 bp AATTATAGCATAATTAAAGCTAACGTTCAGATCCATTaGAAGGTGGAACAACTCAAATCTAACTCCCTTGTC +
Preference number: 3 (lower is better)
Translates to: NYSIIKANVQIH*KVEQLKSNSLV
Trigger: GACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTGATCTGTGGAGCTACAGCCGCACCTCCTTTTTCTTaGAGGAAAAGGGATCCAGCG +
Preference number: 4 (lower is better)
Translates to: LGTSLLLKGSPLICGATAAPPFS*RKRDPA
Trigger: CGCTGGATCCCTTTTCCTCCAAGAAAAAGGAGGTGC...GGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCACTGCACCGTGGTGTTaGGCCGGATTTCACGGAACA +
Preference number: 4 (lower is better)
Translates to: FLIEARYWAHPSCSREALTAPWC*AGFHGT
Trigger: TGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGT...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCCCACTTCTGCAGCATTaGAGTTATTGGGCGGGACTG +
Preference number: 4 (lower is better)
Translates to: FLIEARYWAHPSCSREALPLLQH*SYWAGL
Trigger: CAGTCCCGCCCAATAACTCCAATGCTGCAGAAGTGG...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCCCATCACTGTTTTCCTaGGGTGTGCTGTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: FLIEARYWAHPSCSREALPSLFS*GVLSTA
Trigger: AGCTGTGGACAGCACACCCCAGGAAAACAGTGATGG...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCGGTAATCTTTCAGGTTaGCACCCCTTGGCACCAGGC +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCGNLSG*HPLAPG
Trigger: GCCTGGTGCCAAGGGGTGTCAACCTGAAAGATTACC...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCCTCTCCTTGAACAGGTaGACAGCTGTGACATTCAGG +
Preference number: 4 (lower is better)
Translates to: FLIEARYWAHPSCSREALLSLNR*TAVTFR
Trigger: CCTGAATGTCACAGCTGTTCACCTGTTCAAGGAGAG...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTGTTTTCCTGGGGTGTaGTGTCCACAGCTTGCCAGC +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCCFPGV*CPQLAS
Trigger: GCTGGCAAGCTGTGGACAGCACACCCCAGGAAAACA...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTGATCTGTGGAGCTACAGCCCCATCTCCTCCAATTTaGTTGGTCACAATTAGCTTC +
Preference number: 4 (lower is better)
Translates to: LGTSLLLKGSPLICGATAPSPPI*LVTISF
Trigger: GAAGCTAATTGTGACCAAGCAAATTGGAGGAGATGG...GGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCACTGCACCGTGGTGTTaGGCCGGATTTCACGGAACA +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCTAPWC*AGFHGT
Trigger: TGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGT...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAGGTAATCTTTCAGGTTaGCACCCCTTGGCACCAGGC +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRGNLSG*HPLAPG
Trigger: GCCTGGTGCCAAGGGGTGTCAACCTGAAAGATTACC...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAGCACAGGGATGTAGGTaGCCTTGTTCTCCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRAQGCR*PCSPEG
Trigger: ACCCTCAGGAGAACAAGGGCACCTACATCCCTGTGC...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCAACGGGGCATCAAACTaGAAGCAGACATGGCCATGC +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCNGASN*KQTWPC
Trigger: GCATGGCCATGTCTGCTTCCAGTTTGATGCCCCGTT...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCGTCTCAGGGAGTCACTaGTCATGCTGGCAATCAGCT +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCVSGSH*SCWQSA
Trigger: AGCTGATTGCCAGCATGACCAGTGACTCCCTGAGAC...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCCCCCAGTGTAGAAGGTaGTGTTGCCAGAAAGATAGG +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCPQCRR*CCQKDR
Trigger: CCTATCTTTCTGGCAACATCACCTTCTACACTGGGG...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCGTATCCGTGATATCCTaGATGCCATCTCCTCCAATT +
Preference number: 4 (lower is better)
Translates to: FLIEARYWAHPSCSREALVSVIS*MPSPPI
Trigger: AATTGGAGGAGATGGCATGCAGGATATCACGGATAC...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAGGGAGTCACTGGTCATaGTGGCAATCAGCTTCCGAT +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRGSHWS*WQSASD
Trigger: ATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCC...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTTATGGACTTTTGTTTaGCCAGGACATCCCTGGACT +
Preference number: 4 (lower is better)
Translates to: FLIEARYWAHPSCSREALLWTFV*PGHPWT
Trigger: AGTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAA...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCCTTCCCACTGCACCGTaGTGTTGGGCCGGATTTCAC +
Preference number: 4 (lower is better)
Translates to: PIILSVGALAHKVKDLGALPTAP*CWAGFH
Trigger: GTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAG...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAACACCGAATCCTTGGTaGGTTTGGAGCTCACATTCC +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRTPNPW*VWSSHS
Trigger: GGAATGTGAGCTCCAAACTCACCAAGGATTCGGTGT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGATGTCCATTTGCAGATTaGCATCATTGTCGTGGGCCG +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRCPFAD*HHCRGP
Trigger: CGGCCCACGACAATGATGCCAATCTGCAAATGGACA...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCCCATGCTTAACGGCTTaGACAGAGGCAGGGCCACAG +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGPCLTA*TEAGPQ
Trigger: CTGTGGCCCTGCCTCTGTCCAAGCCGTTAAGCATGG...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAAACTGGAAGCAGACATaGCCATGCTTAACGGCTTGG +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRNWKQT*PCLTAW
Trigger: CCAAGCCGTTAAGCATGGCCATGTCTGCTTCCAGTT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCGGTCACATCAGACCTTaGTTTGACAACACCTTCAGT +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCGHIRP*FDNTFS
Trigger: ACTGAAGGTGTTGTCAAATCAAGGTCTGATGTGACC...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCGCACAGGGATGTAGGTaGCCTTGTTCTCCTGAGGGT +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGAQGCR*PCSPEG
Trigger: ACCCTCAGGAGAACAAGGGCACCTACATCCCTGTGC...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCAGACTGCAACATACATaGGGAATTTCCCCACAATGC +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCRLQHT*GISPQC
Trigger: GCATTGTGGGGAAATTCCGCATGTATGTTGCAGTCT...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCGTGCTGTCCACAGCTTaGCAGCCTCCAAATCCAACA +
Preference number: 4 (lower is better)
Translates to: PIILSVGALAHKVKDLGAVLSTA*QPPNPT
Trigger: TGTTGGATTTGGAGGCTGGCAAGCTGTGGACAGCAC...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCATCACTGTTGACCTCTaGAAAAACAAACGGGGCATC +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCITVDL*KNKRGI
Trigger: GATGCCCCGTTTGTTTTTGCAGAGGTCAACAGTGAT...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCATATGTGTCTGTTTCTaGGTCTCTTCGAGTACGCAG +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCICVCF*VSSSTQ
Trigger: CTGCGTACTCGAAGAGACCCAGAAACAGACACATAT...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTCCATGCTTAACGGCTTaGACAGAGGCAGGGCCACAG +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVPCLTA*TEAGPQ
Trigger: CTGTGGCCCTGCCTCTGTCCAAGCCGTTAAGCATGG...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCCTCCTCCAATTTGCTTaGTCACAATTAGCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCLLQFA*SQLASR
Trigger: TCGGGAAGCTAATTGTGACCAAGCAAATTGGAGGAG...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTGCAATCAGCTTCCGATaGCCAGAGACCCAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVAISFR*PETQGR
Trigger: TCGGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGC...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR CAA 72 bp TTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTaGGGTGCCCTCTGTCCTTCAGTCAAGAGTAACGCT +
Preference number: 4 (lower is better)
Translates to: LSVGALAHKVKD*GALCPSVKSNA
Trigger: AGCGTTACTCTTGACTGAAGGACAGAGGGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCACACCGAATCCTTGGTaGGTTTGGAGCTCACATTCC +
Preference number: 4 (lower is better)
Translates to: PIILSVGALAHKVKDLGATPNPW*VWSSHS
Trigger: GGAATGTGAGCTCCAAACTCACCAAGGATTCGGTGT...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCATTTGTAAGTATCCGTaGTATCCTGCATGCCATCTC +
Preference number: 4 (lower is better)
Translates to: SGESEFLIEARYWAHPSCICKYP*YPACHL
Trigger: GAGATGGCATGCAGGATATCACGGATACTTACAAAT...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTTGTACTCGCCCGCTCTaGCCAGCACCTCCTTTTTCT +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVCTRPL*PAPPFS
Trigger: AGAAAAAGGAGGTGCTGGTCAGAGCGGGCGAGTACA...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAGTATCCGTGATATCCTaGATGCCATCTCCTCCAATT +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRVSVIS*MPSPPI
Trigger: AATTGGAGGAGATGGCATGCAGGATATCACGGATAC...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATCAGACTTCTTCCCACTaGACCGTGGTGTTGGGCCGG +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYQTSSH*TVVLGR
Trigger: CCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTG...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAACAGGTGAACAGCTGTaGCATTCAGGTAATCTTTCA +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRTGEQL*HSGNLS
Trigger: TGAAAGATTACCTGAATGTCACAGCTGTTCACCTGT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCTGGGAGGTCCACTTCTaGAGCATTGGAGTTATTGGG +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGWEVHF*SIGVIG
Trigger: CCCAATAACTCCAATGCTGCAGAAGTGGACCTCCCA...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAATAGGGAGTCCAGACTaGAACATACATGCGGAATTT +
Preference number: 4 (lower is better)
Translates to: LAFCKAESALALSTQGFRIGSPD*NIHAEF
Trigger: AAATTCCGCATGTATGTTGCAGTCTGGACTCCCTAT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGCAGACTTCTTCCCACTaGACCGTGGTGTTGGGCCGG +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVQTSSH*TVVLGR
Trigger: CCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTG...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTCCACTTCTGCAGCATTaGAGTTATTGGGCGGGACTG +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVPLLQH*SYWAGL
Trigger: CAGTCCCGCCCAATAACTCCAATGCTGCAGAAGTGG...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCAACTGGAAGCAGACATaGCCATGCTTAACGGCTTGG +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGNWKQT*PCLTAW
Trigger: CCAAGCCGTTAAGCATGGCCATGTCTGCTTCCAGTT...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCGGAACACCTTTCTCTTaGGTCTCATCACTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGGTPFS*VSSLQD
Trigger: GTCCTGGAGTGATGAGACCCAAGAGAAAGGTGTTCC...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATGCAATCAGCTTCCGATaGCCAGAGACCCAAGGCCGA +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYAISFR*PETQGR
Trigger: TCGGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGC...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTAGTCACTGGTCATGCTaGCAATCAGCTTCCGATGGC +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVSHWSC*QSASDG
Trigger: GCCATCGGAAGCTGATTGCCAGCATGACCAGTGACT...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTTGGGAGGTCCACTTCTaGAGCATTGGAGTTATTGGG +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVWEVHF*SIGVIG
Trigger: CCCAATAACTCCAATGCTGCAGAAGTGGACCTCCCA...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATTGTTTTCCTGGGGTGTaGTGTCCACAGCTTGCCAGC +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYCFPGV*CPQLAS
Trigger: GCTGGCAAGCTGTGGACAGCACACCCCAGGAAAACA...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCCAAAGGACTCCTTCTTaGACTCTTTCTTGGATACCC +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGQRTPS*TLSWIP
Trigger: GGGTATCCAAGAAAGAGTTCAAGAAGGAGTCCTTTG...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCAGGAAGATGTCCATTTaGAGATTGGCATCATTGTCG +
Preference number: 4 (lower is better)
Translates to: PIILSVGALAHKVKDLGARKMSI*RLASLS
Trigger: CGACAATGATGCCAATCTGCAAATGGACATCTTCCT...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCATATGTGTCTGTTTCTaGGTCTCTTCGAGTACGCAG +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGICVCF*VSSSTQ
Trigger: CTGCGTACTCGAAGAGACCCAGAAACAGACACATAT...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCCTCCTCCAATTTGCTTaGTCACAATTAGCTTCCCGA +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGLLQFA*SQLASR
Trigger: TCGGGAAGCTAATTGTGACCAAGCAAATTGGAGGAG...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCATAGACATTGTCCCATaGTCCAACAAGAACACCTTC +
Preference number: 4 (lower is better)
Translates to: QELAMFCIRISIAKTARGIDIVP*SNKNTF
Trigger: GAAGGTGTTCTTGTTGGATCATGGGACAATGTCTAT...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATCCCCAGTGTAGAAGGTaGTGTTGCCAGAAAGATAGG +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYPQCRR*CCQKDR
Trigger: CCTATCTTTCTGGCAACATCACCTTCTACACTGGGG...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGTGCTGTCCACAGCTTaGCAGCCTCCAAATCCAACA +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVVLSTA*QPPNPT
Trigger: TGTTGGATTTGGAGGCTGGCAAGCTGTGGACAGCAC...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGGGAGTCACTGGTCATaGTGGCAATCAGCTTCCGAT +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVGSHWS*WQSASD
Trigger: ATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCC...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATGGAACACCTTTCTCTTaGGTCTCATCACTCCAGGAC +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYGTPFS*VSSLQD
Trigger: GTCCTGGAGTGATGAGACCCAAGAGAAAGGTGTTCC...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTATTTGTAAGTATCCGTaGTATCCTGCATGCCATCTC +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVICKYP*YPACHL
Trigger: GAGATGGCATGCAGGATATCACGGATACTTACAAAT...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTCCAGGACCATCCAAATaGATCCAGACATTTTGTAGT +
Preference number: 4 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVPGPSK*IQTFCS
Trigger: ACTACAAAATGTCTGGATTCATTTGGATGGTCCTGG...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGAAGCAGACATGGCCATaGTTAACGGCTTGGACAGAG +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVKQTWP*LTAWTE
Trigger: CTCTGTCCAAGCCGTTAAGCATGGCCATGTCTGCTT...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAACCATCACTGTTTTCCTaGGGTGTGCTGTCCACAGCT +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKPSLFS*GVLSTA
Trigger: AGCTGTGGACAGCACACCCCAGGAAAACAGTGATGG...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAAAGTCACTGGTCATGCTaGCAATCAGCTTCCGATGGC +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKSHWSC*QSASDG
Trigger: GCCATCGGAAGCTGATTGCCAGCATGACCAGTGACT...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAAGTCTCAGGGAGTCACTaGTCATGCTGGCAATCAGCT +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKVSGSH*SCWQSA
Trigger: AGCTGATTGCCAGCATGACCAGTGACTCCCTGAGAC...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATGGTCACATCAGACCTTaGTTTGACAACACCTTCAGT +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYGHIRP*FDNTFS
Trigger: ACTGAAGGTGTTGTCAAATCAAGGTCTGATGTGACC...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATCAAAGGACTCCTTCTTaGACTCTTTCTTGGATACCC +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYQRTPS*TLSWIP
Trigger: GGGTATCCAAGAAAGAGTTCAAGAAGGAGTCCTTTG...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAAAAGCAGACATGGCCATaGTTAACGGCTTGGACAGAG +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKKQTWP*LTAWTE
Trigger: CTCTGTCCAAGCCGTTAAGCATGGCCATGTCTGCTT...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAAGCACCTCCTTTTTCTTaGAGGAAAAGGGATCCAGCG +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKAPPFS*RKRDPA
Trigger: CGCTGGATCCCTTTTCCTCCAAGAAAAAGGAGGTGC...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATACAGGTGAACAGCTGTaGCATTCAGGTAATCTTTCA +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYTGEQL*HSGNLS
Trigger: TGAAAGATTACCTGAATGTCACAGCTGTTCACCTGT...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATCCATCTCCTCCAATTTaGTTGGTCACAATTAGCTTC +
Preference number: 4 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYPSPPI*LVTISF
Trigger: GAAGCTAATTGTGACCAAGCAAATTGGAGGAGATGG...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGTTATGGACTTTTGTTTaGCCAGGACATCCCTGGACT +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVLWTFV*PGHPWT
Trigger: AGTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAA...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
3UTR CAA 72 bp AAGTTTCTCAAGCTGTTTTTCTTTTTGACAGTGGCATaGGGTGAATGTGATGACCTCAGAGAAACAGGTGAA +
Preference number: 4 (lower is better)
Translates to: KFLKLFFFLTVA*GECDDLRETGE
Trigger: TTCACCTGTTTCTCTGAGGTCATCACATTCACCCAATGCCACTGTCAAAAAGAAAAACAGCTTGAGAAACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGATAGACATTGTCCCATaGTCCAACAAGAACACCTTC +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVIDIVP*SNKNTF
Trigger: GAAGGTGTTCTTGTTGGATCATGGGACAATGTCTAT...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGATAGGGAGTCCAGACTaGAACATACATGCGGAATTT +
Preference number: 4 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVIGSPD*NIHAEF
Trigger: AAATTCCGCATGTATGTTGCAGTCTGGACTCCCTAT...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR TCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAACCAGGACCATCCAAATaGATCCAGACATTTTGTAGT +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKPGPSK*IQTFCS
Trigger: ACTACAAAATGTCTGGATTCATTTGGATGGTCCTGG...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR GCA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAAAGGAAGATGTCCATTTaGAGATTGGCATCATTGTCG +
Preference number: 4 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKRKMSI*RLASLS
Trigger: CGACAATGATGCCAATCTGCAAATGGACATCTTCCT...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp GCCAGGACATCCCTGGACTCGTTGATGCGTGCCGTGACGAAGAAGTaGAAGAAGCCCTGTTCTAGAAGGTGGCTCATGTACTCGCCCGCT +
Preference number: 5 (lower is better)
Translates to: ARTSLDSLMRAVTKK*KKPCSRRWLMYSPA
Trigger: AGCGGGCGAGTACATGAGCCACCTTCTAGAACAGGGCTTCTTGCACTTCTTCGTCACGGCACGCATCAACGAGTCCAGGGATGTCCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp AGCTTCCGATGGCCAGAGACCCAAGGCCGACAGACTTCTTCCCACTaGACCGTGGTGTTGGGCCGGATTTCACGGAACACCTTTCTCTTG +
Preference number: 5 (lower is better)
Translates to: SFRWPETQGRQTSSH*TVVLGRISRNTFLL
Trigger: CAAGAGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTCTCTGGCCATCGGAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp GATGGCCAGAGACCCAAGGCCGACAGACTTCTTCCCACTGCACCGTaGTGTTGGGCCGGATTTCACGGAACACCTTTCTCTTGGGTCTCA +
Preference number: 5 (lower is better)
Translates to: DGQRPKADRLLPTAP*CWAGFHGTPFSWVS
Trigger: TGAGACCCAAGAGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTCTCTGGCCATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp ACATGTCTCAGGGAGTCACTGGTCATGCTGGCAATCAGCTTCCGATaGCCAGAGACCCAAGGCCGACAGACTTCTTCCCACTGCACCGTG +
Preference number: 5 (lower is better)
Translates to: TCLRESLVMLAISFR*PETQGRQTSSHCTV
Trigger: CACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTGATCTGTGGAGCTACAGCCCGGAACACCTTTCTCTaGGGTCTCATCACTCCAGGA +
Preference number: 5 (lower is better)
Translates to: LGTSLLLKGSPLICGATARNTFL*GLITPG
Trigger: TCCTGGAGTGATGAGACCCAAGAGAAAGGTGTTCCG...GGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp AGGCAGGGCCACAGCGGTACATGCCATCACTGTTTTCCTGGGGTGTaGTGTCCACAGCTTGCCAGCCTCCAAATCCAACAGGAAGATCAG +
Preference number: 5 (lower is better)
Translates to: RQGHSGTCHHCFPGV*CPQLASLQIQQEDQ
Trigger: CTGATCTTCCTGTTGGATTTGGAGGCTGGCAAGCTGTGGACAGCACACCCCAGGAAAACAGTGATGGCATGTACCGCTGTGGCCCTGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp CAGAGACCCAAGGCCGACAGACTTCTTCCCACTGCACCGTGGTGTTaGGCCGGATTTCACGGAACACCTTTCTCTTGGGTCTCATCACTC +
Preference number: 5 (lower is better)
Translates to: QRPKADRLLPTAPWC*AGFHGTPFSWVSSL
Trigger: GAGTGATGAGACCCAAGAGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTCTCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp GAAGATCCAGCTCTCCATACACATGTCTCAGGGAGTCACTGGTCATaGTGGCAATCAGCTTCCGATGGCCAGAGACCCAAGGCCGACAGA +
Preference number: 5 (lower is better)
Translates to: EDPALHTHVSGSHWS*WQSASDGQRPKADR
Trigger: TCTGTCGGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAGAGCTGGATCTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp GATCCAGCTCTCCATACACATGTCTCAGGGAGTCACTGGTCATGCTaGCAATCAGCTTCCGATGGCCAGAGACCCAAGGCCGACAGACTT +
Preference number: 5 (lower is better)
Translates to: DPALHTHVSGSHWSC*QSASDGQRPKADRL
Trigger: AAGTCTGTCGGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAGAGCTGGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTGATCTGTGGAGCTACAGCCTCTCCTCCAATTTGCTaGGTCACAATTAGCTTCCCG +
Preference number: 5 (lower is better)
Translates to: LGTSLLLKGSPLICGATASPPIC*VTISFP
Trigger: CGGGAAGCTAATTGTGACCAAGCAAATTGGAGGAGA...GGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp CGGTACATGCCATCACTGTTTTCCTGGGGTGTGCTGTCCACAGCTTaGCAGCCTCCAAATCCAACAGGAAGATCAGGCCTTGTCATCCAC +
Preference number: 5 (lower is better)
Translates to: RYMPSLFSWGVLSTA*QPPNPTGRSGLVIH
Trigger: GTGGATGACAAGGCCTGATCTTCCTGTTGGATTTGGAGGCTGGCAAGCTGTGGACAGCACACCCCAGGAAAACAGTGATGGCATGTACCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp GAATCTGAAGATCCAGCTCTCCATACACATGTCTCAGGGAGTCACTaGTCATGCTGGCAATCAGCTTCCGATGGCCAGAGACCCAAGGCC +
Preference number: 5 (lower is better)
Translates to: ESEDPALHTHVSGSH*SCWQSASDGQRPKA
Trigger: GGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAGAGCTGGATCTTCAGATTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCTGATCTGTGGAGCTACAGCCAAGGTGATAGTCACTTaGAAGTCCTTTCCCAGCACA +
Preference number: 5 (lower is better)
Translates to: LGTSLLLKGSPLICGATAKVIVT*KSFPST
Trigger: TGTGCTGGGAAAGGACTTCAAAGTGACTATCACCTT...GGCTGTAGCTCCACAGATCAGAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp CATAGGGAGTCCAGACTGCAACATACATGCGGAATTTCCCCACAATaGATTCCGGAGAAGACTGAACGGAAAGTCGCACCGACCGGTCCT +
Preference number: 5 (lower is better)
Translates to: HRESRLQHTCGISPQ*IPEKTERKVAPTGP
Trigger: AGGACCGGTCGGTGCGACTTTCCGTTCAGTCTTCTCCGGAATGCATTGTGGGGAAATTCCGCATGTATGTTGCAGTCTGGACTCCCTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGACTGACTTTGATGGGGTaGCCTCTGCCAGAAAGGTCC +
Preference number: 5 (lower is better)
Translates to: LAFCKAESALALSTQGFRLTLMG*PLPERS
Trigger: GGACCTTTCTGGCAGAGGCAACCCCATCAAAGTCAG...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCGCCATGCTTAACGGCTaGGACAGAGGCAGGGCCACA +
Preference number: 5 (lower is better)
Translates to: PIILSVGALAHKVKDLGAAMLNG*DRGRAT
Trigger: TGTGGCCCTGCCTCTGTCCAAGCCGTTAAGCATGGC...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp TTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCAAGGGAAGCCCTCCACGTGAGTGCCATCTaGCTTAGCTGTGATGTAAAC +
Preference number: 5 (lower is better)
Translates to: FLIEARYWAHPSCSREALHVSAI*LSCDVN
Trigger: GTTTACATCACAGCTAAGCAAGATGGCACTCACGTG...GAGGGCTTCCCTTGAGCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCCACTGCACCGTGGTGTaGGGCCGGATTTCACGGAAC +
Preference number: 5 (lower is better)
Translates to: PIILSVGALAHKVKDLGAHCTVV*GRISRN
Trigger: GTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTG...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp TTCTGGGTCTCTTCGAGTACGCAGGATGCCATAGGGAGTCCAGACTaGAACATACATGCGGAATTTCCCCACAATGCATTCCGGAGAAGA +
Preference number: 5 (lower is better)
Translates to: FWVSSSTQDAIGSPD*NIHAEFPHNAFRRR
Trigger: TCTTCTCCGGAATGCATTGTGGGGAAATTCCGCATGTATGTTGCAGTCTGGACTCCCTATGGCATCCTGCGTACTCGAAGAGACCCAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp ACAAGATCACTGTTGACCTCTGCAAAAACAAACGGGGCATCAAACTaGAAGCAGACATGGCCATGCTTAACGGCTTGGACAGAGGCAGGG +
Preference number: 5 (lower is better)
Translates to: TRSLLTSAKTNGASN*KQTWPCLTAWTEAG
Trigger: CCCTGCCTCTGTCCAAGCCGTTAAGCATGGCCATGTCTGCTTCCAGTTTGATGCCCCGTTTGTTTTTGCAGAGGTCAACAGTGATCTTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTTCCACACCGAATCCTaGGTGAGTTTGGAGCTCACA +
Preference number: 5 (lower is better)
Translates to: SGESEFLIEARYWAHPSCFHTES*VSLELT
Trigger: TGTGAGCTCCAAACTCACCAAGGATTCGGTGTGGAA...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS TCA 90 bp GCAACATACATGCGGAATTTCCCCACAATGCATTCCGGAGAAGACTaGACGGAAAGTCGCACCGACCGGTCCTCATTCATGATAACCTTG +
Preference number: 5 (lower is better)
Translates to: ATYMRNFPTMHSGED*TESRTDRSSFMITL
Trigger: CAAGGTTATCATGAATGAGGACCGGTCGGTGCGACTTTCCGTTCAGTCTTCTCCGGAATGCATTGTGGGGAAATTCCGCATGTATGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 90 bp GTCCTCTTCACACCAAGGGTTGAAGAGAATATATGTGTCTGTTTCTaGGTCTCTTCGAGTACGCAGGATGCCATAGGGAGTCCAGACTGC +
Preference number: 5 (lower is better)
Translates to: VLFTPRVEENICVCF*VSSSTQDAIGSPDC
Trigger: GCAGTCTGGACTCCCTATGGCATCCTGCGTACTCGAAGAGACCCAGAAACAGACACATATATTCTCTTCAACCCTTGGTGTGAAGAGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAATGTCCATTTGCAGATaGGCATCATTGTCGTGGGCC +
Preference number: 5 (lower is better)
Translates to: LAFCKAESALALSTQGFRMSICR*ASLSWA
Trigger: GGCCCACGACAATGATGCCAATCTGCAAATGGACAT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCGAATCCTTGGTGAGTTaGGAGCTCACATTCCCATCT +
Preference number: 5 (lower is better)
Translates to: SGESEFLIEARYWAHPSCESLVS*ELTFPS
Trigger: AGATGGGAATGTGAGCTCCAAACTCACCAAGGATTC...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCTCTCCTCCAATTTGCTaGGTCACAATTAGCTTCCCG +
Preference number: 5 (lower is better)
Translates to: SGESEFLIEARYWAHPSCSPPIC*VTISFP
Trigger: CGGGAAGCTAATTGTGACCAAGCAAATTGGAGGAGA...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAAGCACCTCCTTTTTCTaGGAGGAAAAGGGATCCAGC +
Preference number: 5 (lower is better)
Translates to: LAFCKAESALALSTQGFRSTSFF*EEKGSS
Trigger: GCTGGATCCCTTTTCCTCCAAGAAAAAGGAGGTGCT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGTGGGGAATCAGAATTCTTAATTGAGGCCAGGTACTGGGCACATCCCTCCTGCCAGGAAGATGTCCATTaGCAGATTGGCATCATTGTC +
Preference number: 5 (lower is better)
Translates to: SGESEFLIEARYWAHPSCQEDVH*QIGIIV
Trigger: GACAATGATGCCAATCTGCAAATGGACATCTTCCTG...GCAGGAGGGATGTGCCCAGTACCTGGCCTCAATTAAGAATTCTGATTCCCCACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTCTGACTTTGATGGGGTaGCCTCTGCCAGAAAGGTCC +
Preference number: 5 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVLTLMG*PLPERS
Trigger: GGACCTTTCTGGCAGAGGCAACCCCATCAAAGTCAG...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGACAGGAAGATGTCCATTaGCAGATTGGCATCATTGTC +
Preference number: 5 (lower is better)
Translates to: LAFCKAESALALSTQGFRQEDVH*QIGIIV
Trigger: GACAATGATGCCAATCTGCAAATGGACATCTTCCTG...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CCAATAATCTTGTCTGTTGGAGCCTTGGCACATAAGGTAAAGGATTTGGGTGCCTTCCACACCGAATCCTaGGTGAGTTTGGAGCTCACA +
Preference number: 5 (lower is better)
Translates to: PIILSVGALAHKVKDLGAFHTES*VSLELT
Trigger: TGTGAGCTCCAAACTCACCAAGGATTCGGTGTGGAA...GGCACCCAAATCCTTTACCTTATGTGCCAAGGCTCCAACAGACAAGATTATTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATGCCATGCTTAACGGCTaGGACAGAGGCAGGGCCACA +
Preference number: 5 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYAMLNG*DRGRAT
Trigger: TGTGGCCCTGCCTCTGTCCAAGCCGTTAAGCATGGC...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGAAAGGTGATAGTCACTTaGAAGTCCTTTCCCAGCACA +
Preference number: 5 (lower is better)
Translates to: LAFCKAESALALSTQGFRKVIVT*KSFPST
Trigger: TGTGCTGGGAAAGGACTTCAAAGTGACTATCACCTT...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCCGGAACACCTTTCTCTaGGGTCTCATCACTCCAGGA +
Preference number: 5 (lower is better)
Translates to: QELAMFCIRISIAKTARGRNTFL*GLITPG
Trigger: TCCTGGAGTGATGAGACCCAAGAGAAAGGTGTTCCG...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATCACTGCACCGTGGTGTaGGGCCGGATTTCACGGAAC +
Preference number: 5 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYHCTVV*GRISRN
Trigger: GTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTG...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 90 bp ATTCTAGTAGAATGTCAACACTTCCTGTCCAGGCTGATGGAGGGATaGCGTAGGCATAGACATTGTCCCATGATCCAACAAGAACACCTT +
Preference number: 5 (lower is better)
Translates to: ILVECQHFLSRLMEG*RRHRHCPMIQQEHL
Trigger: AAGGTGTTCTTGTTGGATCATGGGACAATGTCTATGCCTACGGCATCCCTCCATCAGCCTGGACAGGAAGTGTTGACATTCTACTAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCGAATCCTTGGTGAGTTaGGAGCTCACATTCCCATCT +
Preference number: 5 (lower is better)
Translates to: QELAMFCIRISIAKTARGESLVS*ELTFPS
Trigger: AGATGGGAATGTGAGCTCCAAACTCACCAAGGATTC...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTGTGTTGAGGGTCTTCTaGGCTCCATACATCAGAGCA +
Preference number: 5 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVVLRVF*APYIRA
Trigger: TGCTCTGATGTATGGAGCCAAGAAGACCCTCAACAC...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCATTATGGACTTTTGTTaGGCCAGGACATCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: QELAMFCIRISIAKTARGIMDFC*ARTSLD
Trigger: GTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAAT...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CTGGCCTTTTGCAAGGCTGAATCTGCCTTAGCTCTCAGCACTCAAGGGTTTAGACGGACAATCAACTTATaGTTGTCATATTTGTCTGTG +
Preference number: 5 (lower is better)
Translates to: LAFCKAESALALSTQGFRRTINL*LSYLSV
Trigger: CACAGACAAATATGACAACAATAAGTTGATTGTCCG...TCTAAACCCTTGAGTGCTGAGAGCTAAGGCAGATTCAGCCTTGCAAAAGGCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTCACGTGAGTGCCATCTaGCTTAGCTGTGATGTAAAC +
Preference number: 5 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVHVSAI*LSCDVN
Trigger: GTTTACATCACAGCTAAGCAAGATGGCACTCACGTG...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp TCCATTGGAAGGTGGAACAACTCAAATCTAACTCCCTTGTCCAATAGCTTGGTTATTATGGACTTTTGTTaGGCCAGGACATCCCTGGAC +
Preference number: 5 (lower is better)
Translates to: SIGRWNNSNLTPLSNSLVIMDFC*ARTSLD
Trigger: GTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAAT...AACCAAGCTATTGGACAAGGGAGTTAGATTTGAGTTGTTCCACCTTCCAATGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGAGCACCTCCTTTTTCTaGGAGGAAAAGGGATCCAGC +
Preference number: 5 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVSTSFF*EEKGSS
Trigger: GCTGGATCCCTTTTCCTCCAAGAAAAAGGAGGTGCT...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS TCA 90 bp CTAGTCTCTCTTCTTCTTGGCCTTCTTGAAATTTGTAAGTATCCGTaGTATCCTGCATGCCATCTCCTCCAATTTGCTTGGTCACAATTA +
Preference number: 5 (lower is better)
Translates to: LVSLLLGLLEICKYP*YPACHLLQFAWSQL
Trigger: TAATTGTGACCAAGCAAATTGGAGGAGATGGCATGCAGGATATCACGGATACTTACAAATTTCAAGAAGGCCAAGAAGAAGAGAGACTAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CAAGAGCTAGCTATGTTTTGCATTAGAATCTCCATAGCCAAGACTGCAAGAGGCTTCTTCTTGGCCTTCTaGAAATTTGTAAGTATCCGT +
Preference number: 5 (lower is better)
Translates to: QELAMFCIRISIAKTARGFFLAF*KFVSIR
Trigger: ACGGATACTTACAAATTTCAAGAAGGCCAAGAAGAA...GCCTCTTGCAGTCTTGGCTATGGAGATTCTAATGCAAAACATAGCTAGCTCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp AGGGTTAAAGTAAGGTTATTCATTTTGCTGATCAGGACACAGTGTGACACCTATTCAAAGGACTCCTTCTaGAACTCTTTCTTGGATACC +
Preference number: 5 (lower is better)
Translates to: RVKVRLFILLIRTQCDTYSKDSF*NSFLDT
Trigger: GGTATCCAAGAAAGAGTTCAAGAAGGAGTCCTTTGA...ATAGGTGTCACACTGTGTCCTGATCAGCAAAATGAATAACCTTACTTTAACCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp CGAAGGCTTAATTATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGCGGACAATCAACTTATaGTTGTCATATTTGTCTGTG +
Preference number: 5 (lower is better)
Translates to: RRLNYSIIKANVQIHWKVRTINL*LSYLSV
Trigger: CACAGACAAATATGACAACAATAAGTTGATTGTCCG...CACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATAATTAAGCCTTCG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS-3UTR CAA 90 bp TATAGCATAATTAAAGCTAACGTTCAGATCCATTGGAAGGTGGAACAACTCAAATTCTTCTTGGCCTTCTaGAAATTTGTAAGTATCCGT +
Preference number: 5 (lower is better)
Translates to: YSIIKANVQIHWKVEQLKFFLAF*KFVSIR
Trigger: ACGGATACTTACAAATTTCAAGAAGGCCAAGAAGAA...TTTGAGTTGTTCCACCTTCCAATGGATCTGAACGTTAGCTTTAATTATGCTATA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp ACAAACGGGGCATCAAACTGGAAGCAGACATGGCCATaGTTAACGGCTTGGACAGAGGCAGGGCCACAGCGG +
Preference number: 6 (lower is better)
Translates to: TNGASNWKQTWP*LTAWTEAGPQR
Trigger: CCGCTGTGGCCCTGCCTCTGTCCAAGCCGTTAAGCATGGCCATGTCTGCTTCCAGTTTGATGCCCCGTTTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp GCAGGGCCACAGCGGTACATGCCATCACTGTTTTCCTaGGGTGTGCTGTCCACAGCTTGCCAGCCTCCAAAT +
Preference number: 6 (lower is better)
Translates to: AGPQRYMPSLFS*GVLSTACQPPN
Trigger: ATTTGGAGGCTGGCAAGCTGTGGACAGCACACCCCAGGAAAACAGTGATGGCATGTACCGCTGTGGCCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp AGGGAGTCACTGGTCATGCTGGCAATCAGCTTCCGATaGCCAGAGACCCAAGGCCGACAGACTTCTTCCCAC +
Preference number: 6 (lower is better)
Translates to: RESLVMLAISFR*PETQGRQTSSH
Trigger: GTGGGAAGAAGTCTGTCGGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp CCAGAGACCCAAGGCCGACAGACTTCTTCCCACTGCACCGTGGTGTaGGGCCGGATTTCACGGAACACCTTTCTCTTGGGTCTCATCACT +
Preference number: 6 (lower is better)
Translates to: PETQGRQTSSHCTVV*GRISRNTFLLGLIT
Trigger: AGTGATGAGACCCAAGAGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTCTCTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp AGACCCAAGGCCGACAGACTTCTTCCCACTGCACCGTaGTGTTGGGCCGGATTTCACGGAACACCTTTCTCT +
Preference number: 6 (lower is better)
Translates to: RPKADRLLPTAP*CWAGFHGTPFS
Trigger: AGAGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTGGGTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp CTCCATACACATGTCTCAGGGAGTCACTGGTCATGCTaGCAATCAGCTTCCGATGGCCAGAGACCCAAGGCC +
Preference number: 6 (lower is better)
Translates to: LHTHVSGSHWSC*QSASDGQRPKA
Trigger: GGCCTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp CAAGGCCGACAGACTTCTTCCCACTGCACCGTGGTGTaGGGCCGGATTTCACGGAACACCTTTCTCTTGGGT +
Preference number: 6 (lower is better)
Translates to: QGRQTSSHCTVV*GRISRNTFLLG
Trigger: ACCCAAGAGAAAGGTGTTCCGTGAAATCCGGCCCAACACCACGGTGCAGTGGGAAGAAGTCTGTCGGCCTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp GCTCTCCATACACATGTCTCAGGGAGTCACTGGTCATaGTGGCAATCAGCTTCCGATGGCCAGAGACCCAAG +
Preference number: 6 (lower is better)
Translates to: ALHTHVSGSHWS*WQSASDGQRPK
Trigger: CTTGGGTCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAGAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp CCATCACTGTTTTCCTGGGGTGTGCTGTCCACAGCTTaGCAGCCTCCAAATCCAACAGGAAGATCAGGCCTT +
Preference number: 6 (lower is better)
Translates to: PSLFSWGVLSTA*QPPNPTGRSGL
Trigger: AAGGCCTGATCTTCCTGTTGGATTTGGAGGCTGGCAAGCTGTGGACAGCACACCCCAGGAAAACAGTGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp TCCCTGGACTCGTTGATGCGTGCCGTGACGAAGAAGTaGAAGAAGCCCTGTTCTAGAAGGTGGCTCATGTAC +
Preference number: 6 (lower is better)
Translates to: SLDSLMRAVTKK*KKPCSRRWLMY
Trigger: GTACATGAGCCACCTTCTAGAACAGGGCTTCTTGCACTTCTTCGTCACGGCACGCATCAACGAGTCCAGGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp GCAAAAACAAACGGGGCATCAAACTGGAAGCAGACATaGCCATGCTTAACGGCTTGGACAGAGGCAGGGCCA +
Preference number: 6 (lower is better)
Translates to: AKTNGASNWKQT*PCLTAWTEAGP
Trigger: TGGCCCTGCCTCTGTCCAAGCCGTTAAGCATGGCCATGTCTGCTTCCAGTTTGATGCCCCGTTTGTTTTTGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp GATCCAGCTCTCCATACACATGTCTCAGGGAGTCACTaGTCATGCTGGCAATCAGCTTCCGATGGCCAGAGA +
Preference number: 6 (lower is better)
Translates to: DPALHTHVSGSH*SCWQSASDGQR
Trigger: TCTCTGGCCATCGGAAGCTGATTGCCAGCATGACCAGTGACTCCCTGAGACATGTGTATGGAGAGCTGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp CTTGCCAGCCTCCAAATCCAACAGGAAGATCAGGCCTaGTCATCCACGCTTCGTTCCAGCAGTGGTAGTTCC +
Preference number: 6 (lower is better)
Translates to: LASLQIQQEDQA*SSTLRSSSGSS
Trigger: GGAACTACCACTGCTGGAACGAAGCGTGGATGACAAGGCCTGATCTTCCTGTTGGATTTGGAGGCTGGCAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp ATGGACTTTTGTTTGGCCAGGACATCCCTGGACTCGTaGATGCGTGCCGTGACGAAGAAGTGCAAGAAGCCC +
Preference number: 6 (lower is better)
Translates to: MDFCLARTSLDS*MRAVTKKCKKP
Trigger: GGGCTTCTTGCACTTCTTCGTCACGGCACGCATCAACGAGTCCAGGGATGTCCTGGCCAAACAAAAGTCCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp CGACCGGTCCTCATTCATGATAACCTTGGCTCCCCACTTTCCGCTTaGCAGCTCTTTCACTACAGGCACAGGGATGTAGGTGCCCTTGTT +
Preference number: 6 (lower is better)
Translates to: RPVLIHDNLGSPLSA*QLFHYRHRDVGALV
Trigger: AACAAGGGCACCTACATCCCTGTGCCTGTAGTGAAAGAGCTGCAAAGCGGAAAGTGGGGAGCCAAGGTTATCATGAATGAGGACCGGTCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp TGTCCACAGCTTGCCAGCCTCCAAATCCAACAGGAAGATCAGGCCTaGTCATCCACGCTTCGTTCCAGCAGTGGTAGTTCCACACCGAAT +
Preference number: 6 (lower is better)
Translates to: CPQLASLQIQQEDQA*SSTLRSSSGSSTPN
Trigger: ATTCGGTGTGGAACTACCACTGCTGGAACGAAGCGTGGATGACAAGGCCTGATCTTCCTGTTGGATTTGGAGGCTGGCAAGCTGTGGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp AGGTGGCTCATGTACTCGCCCGCTCTGACCAGCACCTCCTTTTTCTaGGAGGAAAAGGGATCCAGCGTCTCTTCAAAGGACTCCTTCTTG +
Preference number: 6 (lower is better)
Translates to: RWLMYSPALTSTSFF*EEKGSSVSSKDSFL
Trigger: CAAGAAGGAGTCCTTTGAAGAGACGCTGGATCCCTTTTCCTCCAAGAAAAAGGAGGTGCTGGTCAGAGCGGGCGAGTACATGAGCCACCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS TCA 72 bp ATGCGGAATTTCCCCACAATGCATTCCGGAGAAGACTaGACGGAAAGTCGCACCGACCGGTCCTCATTCATG +
Preference number: 6 (lower is better)
Translates to: MRNFPTMHSGED*TESRTDRSSFM
Trigger: CATGAATGAGGACCGGTCGGTGCGACTTTCCGTTCAGTCTTCTCCGGAATGCATTGTGGGGAAATTCCGCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp TCATCATCCTTGGCATTCACCATTGCTGATCCAACTCGGCTGACTTaGATGGGGTTGCCTCTGCCAGAAAGGTCCATCTCAGCTTTGTCC +
Preference number: 6 (lower is better)
Translates to: SSSLAFTIADPTRLT*MGLPLPERSISALS
Trigger: GGACAAAGCTGAGATGGACCTTTCTGGCAGAGGCAACCCCATCAAAGTCAGCCGAGTTGGATCAGCAATGGTGAATGCCAAGGATGATGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp CCCGATATGGGTGGCATCCACGGCTTCCACCACGTGAGTGCCATCTaGCTTAGCTGTGATGTAAACAAGATCACTGTTGACCTCTGCAAA +
Preference number: 6 (lower is better)
Translates to: PDMGGIHGFHHVSAI*LSCDVNKITVDLCK
Trigger: TTTGCAGAGGTCAACAGTGATCTTGTTTACATCACAGCTAAGCAAGATGGCACTCACGTGGTGGAAGCCGTGGATGCCACCCATATCGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS TCA 72 bp CGTTCCAGCAGTGGTAGTTCCACACCGAATCCTTGGTaGGTTTGGAGCTCACATTCCCATCTTCTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: RSSSGSSTPNPW*VWSSHSHLLPG
Trigger: TCCTGGAAGAAGATGGGAATGTGAGCTCCAAACTCACCAAGGATTCGGTGTGGAACTACCACTGCTGGAACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp CAGCTTTGTCCATCACATACAAGCAAGTATCCAGGATaGCGTCTTCGAACTGGCCATAGCTCCAGCTTCTGC +
Preference number: 6 (lower is better)
Translates to: QLCPSHTSKYPG*RLRTGHSSSFC
Trigger: GCAGAAGCTGGAGCTATGGCCAGTTCGAAGACGGCATCCTGGATACTTGCTTGTATGTGATGGACAAAGCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp CAATTTGCTTGGTCACAATTAGCTTCCCGATATGGGTaGCATCCACGGCTTCCACCACGTGAGTGCCATCTT +
Preference number: 6 (lower is better)
Translates to: QFAWSQLASRYG*HPRLPPRECHL
Trigger: AAGATGGCACTCACGTGGTGGAAGCCGTGGATGCCACCCATATCGGGAAGCTAATTGTGACCAAGCAAATTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp GGTGGCATCCACGGCTTCCACCACGTGAGTGCCATCTaGCTTAGCTGTGATGTAAACAAGATCACTGTTGAC +
Preference number: 6 (lower is better)
Translates to: GGIHGFHHVSAI*LSCDVNKITVD
Trigger: GTCAACAGTGATCTTGTTTACATCACAGCTAAGCAAGATGGCACTCACGTGGTGGAAGCCGTGGATGCCACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp CTGACTTTGATGGGGTTGCCTCTGCCAGAAAGGTCCATCTCAGCTTaGTCCATCACATACAAGCAAGTATCCAGGATGCCGTCTTCGAAC +
Preference number: 6 (lower is better)
Translates to: LTLMGLPLPERSISA*SITYKQVSRMPSSN
Trigger: GTTCGAAGACGGCATCCTGGATACTTGCTTGTATGTGATGGACAAAGCTGAGATGGACCTTTCTGGCAGAGGCAACCCCATCAAAGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp GAATGTCAACACTTCCTGTCCAGGCTGATGGAGGGATaGCGTAGGCATAGACATTGTCCCATGATCCAACAA +
Preference number: 6 (lower is better)
Translates to: ECQHFLSRLMEG*RRHRHCPMIQQ
Trigger: TTGTTGGATCATGGGACAATGTCTATGCCTACGGCATCCCTCCATCAGCCTGGACAGGAAGTGTTGACATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CCA 72 bp CTGTTGACCTCTGCAAAAACAAACGGGGCATCAAACTaGAAGCAGACATGGCCATGCTTAACGGCTTGGACA +
Preference number: 6 (lower is better)
Translates to: LLTSAKTNGASN*KQTWPCLTAWT
Trigger: TGTCCAAGCCGTTAAGCATGGCCATGTCTGCTTCCAGTTTGATGCCCCGTTTGTTTTTGCAGAGGTCAACAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp CTCATTCATGATAACCTTGGCTCCCCACTTTCCGCTTaGCAGCTCTTTCACTACAGGCACAGGGATGTAGGT +
Preference number: 6 (lower is better)
Translates to: LIHDNLGSPLSA*QLFHYRHRDVG
Trigger: ACCTACATCCCTGTGCCTGTAGTGAAAGAGCTGCAAAGCGGAAAGTGGGGAGCCAAGGTTATCATGAATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp TCCGTGATATCCTGCATGCCATCTCCTCCAATTTGCTaGGTCACAATTAGCTTCCCGATATGGGTGGCATCC +
Preference number: 6 (lower is better)
Translates to: SVISCMPSPPIC*VTISFPIWVAS
Trigger: GGATGCCACCCATATCGGGAAGCTAATTGTGACCAAGCAAATTGGAGGAGATGGCATGCAGGATATCACGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp GTGATCTTGGGGATAGTCAGTATTATGGACTTTTGTTaGGCCAGGACATCCCTGGACTCGTTGATGCGTGCC +
Preference number: 6 (lower is better)
Translates to: VILGIVSIMDFC*ARTSLDSLMRA
Trigger: GGCACGCATCAACGAGTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAATACTGACTATCCCCAAGATCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS GCA 72 bp GTATCCGTGATATCCTGCATGCCATCTCCTCCAATTTaGTTGGTCACAATTAGCTTCCCGATATGGGTGGCA +
Preference number: 6 (lower is better)
Translates to: VSVISCMPSPPI*LVTISFPIWVA
Trigger: TGCCACCCATATCGGGAAGCTAATTGTGACCAAGCAAATTGGAGGAGATGGCATGCAGGATATCACGGATAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp GATGGTGATCTTGGGGATAGTCAGTATTATGGACTTTaGTTTGGCCAGGACATCCCTGGACTCGTTGATGCG +
Preference number: 6 (lower is better)
Translates to: DGDLGDSQYYGL*FGQDIPGLVDA
Trigger: CGCATCAACGAGTCCAGGGATGTCCTGGCCAAACAAAAGTCCATAATACTGACTATCCCCAAGATCACCATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp GAGTTTGGAGCTCACATTCCCATCTTCTTCCAGGAAGATGTCCATTaGCAGATTGGCATCATTGTCGTGGGCCGAGAAGTAATTGGTAAT +
Preference number: 6 (lower is better)
Translates to: EFGAHIPIFFQEDVH*QIGIIVVGREVIGN
Trigger: ATTACCAATTACTTCTCGGCCCACGACAATGATGCCAATCTGCAAATGGACATCTTCCTGGAAGAAGATGGGAATGTGAGCTCCAAACTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp ACATCAGACCTTGATTTGACAACACCTTCAGTGTTGAGGGTCTTCTaGGCTCCATACATCAGAGCAGTTTCAAGGGCTAGTCTCTCTTCT +
Preference number: 6 (lower is better)
Translates to: TSDLDLTTPSVLRVF*APYIRAVSRASLSS
Trigger: AGAAGAGAGACTAGCCCTTGAAACTGCTCTGATGTATGGAGCCAAGAAGACCCTCAACACTGAAGGTGTTGTCAAATCAAGGTCTGATGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp AAGTTCATGGTCACATCAGACCTTGATTTGACAACACCTTCAGTGTaGAGGGTCTTCTTGGCTCCATACATCAGAGCAGTTTCAAGGGCT +
Preference number: 6 (lower is better)
Translates to: KFMVTSDLDLTTPSV*RVFLAPYIRAVSRA
Trigger: AGCCCTTGAAACTGCTCTGATGTATGGAGCCAAGAAGACCCTCAACACTGAAGGTGTTGTCAAATCAAGGTCTGATGTGACCATGAACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp TCATCCAGATACACAGCGTCCTCTTCACACCAAGGGTaGAAGAGAATATATGTGTCTGTTTCTGGGTCTCTT +
Preference number: 6 (lower is better)
Translates to: SSRYTASSSHQG*KRIYVSVSGSL
Trigger: AAGAGACCCAGAAACAGACACATATATTCTCTTCAACCCTTGGTGTGAAGAGGACGCTGTGTATCTGGATGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 72 bp TCCACATCAAAGTTCATGGTCACATCAGACCTTGATTaGACAACACCTTCAGTGTTGAGGGTCTTCTTGGCT +
Preference number: 6 (lower is better)
Translates to: STSKFMVTSDLD*TTPSVLRVFLA
Trigger: AGCCAAGAAGACCCTCAACACTGAAGGTGTTGTCAAATCAAGGTCTGATGTGACCATGAACTTTGATGTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8
CDS CAA 90 bp ACAGCATTTTCCACATCAAAGTTCATGGTCACATCAGACCTTGATTaGACAACACCTTCAGTGTTGAGGGTCTTCTTGGCTCCATACATC +
Preference number: 6 (lower is better)
Translates to: TAFSTSKFMVTSDLD*TTPSVLRVFLAPYI
Trigger: GATGTATGGAGCCAAGAAGACCCTCAACACTGAAGGTGTTGTCAAATCAAGGTCTGATGTGACCATGAACTTTGATGTGGAAAATGCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000037491.11
ENSMUST00000164727.8