Pregenerated sensors for F11R (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038235Ensembl transcript IDs: ENSMUST00000043839.5
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCTTTTCTTTAGATCACTTTAAATCTTTCTTACTCCAAGTCTCTTaGGAGCTAACAGAGCTCTCCCACCTCGTACGGACACCATGTCAG | + |
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Preference number: 1 (lower is better) Translates to: AFSLDHFKSFLLQVS*ELTELSHLVRTPCQ Trigger: CTGACATGGTGTCCGTACGAGGTGGGAGAGCTCTGTTAGCTCCCAAGAGACTTGGAGTAAGAAAGATTTAAAGTGATCTAAAGAAAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR TCA 90 bp | CCCTTAGAGGACGACTTGGGGAGGTCCACCATGAAGGCCAGGCAGGAGAGTGCAGGACCTAGAAGACATTaGAGGCATCCTGTGCAGCTA | + |
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Preference number: 2 (lower is better) Translates to: PLEDDLGRSTMKARQESAGPRRH*RHPVQL Trigger: TAGCTGCACAGGATGCCTTCAATGTCTTCTAGGTCC...TGCACTCTCCTGCCTGGCCTTCATGGTGGACCTCCCCAAGTCGTCCTCTAAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR TCA 90 bp | TCCACCATGAAGGCCAGGCAGGAGAGTGCACAGACACTTCCTCCGCCCACTTCAGGAACCTGTAGCACCTaGGTAAGGCAAATGGACAAC | + |
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Preference number: 2 (lower is better) Translates to: STMKARQESAQTLPPPTSGTCST*VRQMDN Trigger: GTTGTCCATTTGCCTTACTCAGGTGCTACAGGTTCC...TGAAGTGGGCGGAGGAAGTGTCTGTGCACTCTCCTGCCTGGCCTTCATGGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CCA 90 bp | TCCACCATGAAGGCCAGGCAGGAGAGTGCACAGACACTTCCTCCGCCCACTTCACAGTGGCACATTTTGTaGAGACAGAAGAGAGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: STMKARQESAQTLPPPTSQWHIL*RQKRGS Trigger: GGAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTG...TGAAGTGGGCGGAGGAAGTGTCTGTGCACTCTCCTGCCTGGCCTTCATGGTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CCA 90 bp | AATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGACAGAAGAGAGGCTCCGAAAGCCAGGTATTGGTTTaGGTTCCTGTCAGCCCAGCC | + |
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Preference number: 2 (lower is better) Translates to: NPGESQWHILWRQKRGSESQVLV*VPVSPA Trigger: GGCTGGGCTGACAGGAACCCAAACCAATACCTGGCT...TTCGGAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR GCA 90 bp | TTACAGCCAGGTATTGGTTTGGGTTCCTGTCAGCCCAGCCACTATTACTGTCTAATTGAAGGCATCCTGTaGAGCTACAGCCAGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: LQPGIGLGSCQPSHYYCLIEGIL*SYSQQG Trigger: CCCCTGCTGGCTGTAGCTGCACAGGATGCCTTCAAT...TAGACAGTAATAGTGGCTGGGCTGACAGGAACCCAAACCAATACCTGGCTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR GCA 90 bp | TTTGAATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGACAGAAGAGAGGCTCTCAGCCCCTCCTTTCTaGAGCTCCCCCTCTAGAGTA | + |
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Preference number: 2 (lower is better) Translates to: FESRRIPVAHFVETEERLSAPPF*SSPSRV Trigger: TACTCTAGAGGGGGAGCTGCAGAAAGGAGGGGCTGA...GAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CCA 90 bp | ATAGTCCTGGGAATCAGCCATGGGTTGCTGGGAAGCAGAACTTTTGTGTCTTTTCCAGGAGAATCCCAGTaGCACATTTTGTGGAGACAG | + |
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Preference number: 2 (lower is better) Translates to: IVLGISHGLLGSRTFVSFPGESQ*HILWRQ Trigger: CTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGG...AAAAGACACAAAAGTTCTGCTTCCCAGCAACCCATGGCTGATTCCCAGGACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CCA 90 bp | ATAGTCCTGGGAATCAGCCATGGGTTGCTGGGAAGCAGAACTTTTGTGTCTTTTAAGCAAGGGGTCCTGTaGGACCTAGAAGACATTGAA | + |
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Preference number: 2 (lower is better) Translates to: IVLGISHGLLGSRTFVSFKQGVL*DLEDIE Trigger: TTCAATGTCTTCTAGGTCCCACAGGACCCCTTGCTT...AAAAGACACAAAAGTTCTGCTTCCCAGCAACCCATGGCTGATTCCCAGGACTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CCA 90 bp | ATAGTCCTGGGAATCAGCCATGGGTTGCTGGGAAGCAGAACTTTTGTGTCTTTTTTACTCCAAGTCTCTTaGGAGCTAACAGAGCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: IVLGISHGLLGSRTFVSFLLQVS*ELTELS Trigger: GGAGAGCTCTGTTAGCTCCCAAGAGACTTGGAGTAA...AAAAGACACAAAAGTTCTGCTTCCCAGCAACCCATGGCTGATTCCCAGGACTAT 47% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR CAA 90 bp | AATGACCATCAGACCTATCTTGCTAATTGCTGCTTTCTCAAACATTaGATGATGGAGGAACTCTCCCTTAGAGGACGACTTGGGGAGGTC | + |
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Preference number: 2 (lower is better) Translates to: NDHQTYLANCCFLKH*MMEELSLRGRLGEV Trigger: GACCTCCCCAAGTCGTCCTCTAAGGGAGAGTTCCTCCATCATCAAATGTTTGAGAAAGCAGCAATTAGCAAGATAGGTCTGATGGTCATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR GCA 90 bp | GACCATCAGACCTATCTTGCTAATTGCTGCTTTCTCAAACATTTGATGATGGAGTCTTCAAAGGGTCCATaGGGTAGTTCCAGCCAAATG | + |
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Preference number: 2 (lower is better) Translates to: DHQTYLANCCFLKHLMMESSKGP*GSSSQM Trigger: CATTTGGCTGGAACTACCGCATGGACCCTTTGAAGA...CTCCATCATCAAATGTTTGAGAAAGCAGCAATTAGCAAGATAGGTCTGATGGTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR GCA 72 bp | CTTGGGGAGGTCCACCATGAAGGCCAGGCAGGAGAGTaGACAGACACTTCCTCCGCCCACTTCACGAAATCC | + |
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Preference number: 3 (lower is better) Translates to: LGEVHHEGQAGE*TDTSSAHFTKS Trigger: GGATTTCGTGAAGTGGGCGGAGGAAGTGTCTGTGCACTCTCCTGCCTGGCCTTCATGGTGGACCTCCCCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CAA 90 bp | ACACACACACACACACACACACACACACGAGGCCACCAAAGAGCCAAGACTATACAGCCAGGTATTGGTTaGGGTTCCTGTCAGCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: THTHTHTHTRGHQRAKTIQPGIG*GSCQPS Trigger: GCTGGGCTGACAGGAACCCAAACCAATACCTGGCTG...TATAGTCTTGGCTCTTTGGTGGCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR-3UTR CAA 90 bp | ACACACACACACACACACACACACACACGAGGCCACCAAAGAGCCAAGACTATATCCCAGTGGCACATTTaGTGGAGACAGAAGAGAGGC | + |
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Preference number: 3 (lower is better) Translates to: THTHTHTHTRGHQRAKTISQWHI*WRQKRG Trigger: GCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGA...TATAGTCTTGGCTCTTTGGTGGCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR TCA 72 bp | TCTCCCACCTCGTACGGACACCATGTCAGTTTACTTTaGATCCAGGAGAATCCCAGTGGCACATTTTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: SPTSYGHHVSLL*IQENPSGTFCG Trigger: TCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAAGTAAACTGACATGGTGTCCGTACGAGGTGGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR TCA 72 bp | TATCTTCAAAGGGTCCATGCGGTAGTTCCAGCCAAATaGAGAGTGACTAATGGCCACCAGTTCCAGCCTTTT | + |
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Preference number: 3 (lower is better) Translates to: YLQRVHAVVPAK*RVTNGHQFQPF Trigger: AAAAGGCTGGAACTGGTGGCCATTAGTCACTCTTCATTTGGCTGGAACTACCGCATGGACCCTTTGAAGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR CCA 72 bp | CCATGTCAGTTTACTTTGAATCCAGGAGAATCCCAGTaGCACATTTTGTGGAGACAGAAGAGAGGCTCCGAA | + |
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Preference number: 3 (lower is better) Translates to: PCQFTLNPGESQ*HILWRQKRGSE Trigger: TTCGGAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAAGTAAACTGACATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR CCA 72 bp | TTAGATCACTTTAAATCTTTCTTACTCCAAGTCTCTTaGGAGCTAACAGAGCTCTCCCACCTCGTACGGACA | + |
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Preference number: 3 (lower is better) Translates to: LDHFKSFLLQVS*ELTELSHLVRT Trigger: TGTCCGTACGAGGTGGGAGAGCTCTGTTAGCTCCCAAGAGACTTGGAGTAAGAAAGATTTAAAGTGATCTAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR GCA 72 bp | GAGAGCAATGACCATCAGACCTATCTTGCTAATTGCTaGTTTCTCAAACATTTGATGATGGAGGAACTCTCC | + |
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Preference number: 3 (lower is better) Translates to: ESNDHQTYLANC*FLKHLMMEELS Trigger: GGAGAGTTCCTCCATCATCAAATGTTTGAGAAAGCAGCAATTAGCAAGATAGGTCTGATGGTCATTGCTCTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR GCA 90 bp | CCCTTAGAGGACGACTTGGGGAGGTCCACCATGAAGGCCAGGCAGGAGAGTGCAGACCTTCTTACCCGGTaGAGTCCCTTTCTTTGTTCT | + |
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Preference number: 4 (lower is better) Translates to: PLEDDLGRSTMKARQESADLLTR*SPFLCS Trigger: AGAACAAAGAAAGGGACTGCACCGGGTAAGAAGGTC...TGCACTCTCCTGCCTGGCCTTCATGGTGGACCTCCCCAAGTCGTCCTCTAAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR TCA 90 bp | ACACACACACACACACACACACACACACGAGGCCACCAAAGAGCCAAGACTATAGGAACCATCATGCTCTaGGCAGGTCAGCACTGCCCT | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTRGHQRAKTIGTIML*AGQHCP Trigger: AGGGCAGTGCTGACCTGCTCAGAGCATGATGGTTCC...TATAGTCTTGGCTCTTTGGTGGCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR TCA 90 bp | CCCTTAGAGGACGACTTGGGGAGGTCCACCATGAAGGCCAGGCAGGAGAGTGCATGGATCAATAGTGAATaGAGAATTCATGAAGGCCCG | + |
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Preference number: 4 (lower is better) Translates to: PLEDDLGRSTMKARQESAWINSE*RIHEGP Trigger: CGGGCCTTCATGAATTCTTCATTCACTATTGATCCA...TGCACTCTCCTGCCTGGCCTTCATGGTGGACCTCCCCAAGTCGTCCTCTAAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR GCA 90 bp | TCCACCATGAAGGCCAGGCAGGAGAGTGCACAGACACTTCCTCCGCCCACTTCAGTTATAACACACAAGTaGAGTTGTGCTGCCTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: STMKARQESAQTLPPPTSVITHK*SCAALD Trigger: GTCCAAGGCAGCACAACTGCACTTGTGTGTTATAAC...TGAAGTGGGCGGAGGAAGTGTCTGTGCACTCTCCTGCCTGGCCTTCATGGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR GCA 90 bp | TTTGAATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGACAGAAGAGAGGCTCGGACAGCTGCCACGATaGCCCCCACATTCAGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: FESRRIPVAHFVETEERLGQLPR*PPHSAP Trigger: TGGAGCTGAATGTGGGGGGCATCGTGGCAGCTGTCC...GAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR TCA 90 bp | TTTGAATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGACAGAAGAGAGGCTCTGGGCTGGCTGTAAATaGCCTTCTTACCCGGTGCAG | + |
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Preference number: 4 (lower is better) Translates to: FESRRIPVAHFVETEERLWAGCK*PSYPVQ Trigger: CTGCACCGGGTAAGAAGGTCATTTACAGCCAGCCCA...GAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR GCA 90 bp | TTTGAATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGACAGAAGAGAGGCTCGGTGGGGAACCATCATaGTCTGAGCAGGTCAGCACT | + |
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Preference number: 4 (lower is better) Translates to: FESRRIPVAHFVETEERLGGEPS*SEQVST Trigger: AGTGCTGACCTGCTCAGAGCATGATGGTTCCCCACC...GAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR TCA 90 bp | ACACACACACACACACACACACACACACGAGGCCACCAAAGAGCCAAGACTATAAGGTGCAGGTCAATTTaGTGGACTCGTTCTCGGGAA | + |
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Preference number: 4 (lower is better) Translates to: THTHTHTHTRGHQRAKTIRCRSI*WTRSRE Trigger: TTCCCGAGAACGAGTCCATCAAATTGACCTGCACCT...TATAGTCTTGGCTCTTTGGTGGCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR TCA 90 bp | GACCATCAGACCTATCTTGCTAATTGCTGCTTTCTCAAACATTTGATGATGGAGCAGAGGAGGGGACACTaGTCGTCGGCTTGGATGGAG | + |
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Preference number: 4 (lower is better) Translates to: DHQTYLANCCFLKHLMMEQRRGH*SSAWME Trigger: CTCCATCCAAGCCGACGATCAGTGTCCCCTCCTCTG...CTCCATCATCAAATGTTTGAGAAAGCAGCAATTAGCAAGATAGGTCTGATGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CCA 90 bp | AAGCAGGGAGCTAGGCTTAAAGTCCTTATTCAGAGGCCTTTACAGCCAGGTATTGCAGTTGTGCTGCCTTaGACGAACTTCCACTCCACT | + |
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Preference number: 4 (lower is better) Translates to: KQGARLKVLIQRPLQPGIAVVLP*TNFHST Trigger: AGTGGAGTGGAAGTTCGTCCAAGGCAGCACAACTGC...AATACCTGGCTGTAAAGGCCTCTGAATAAGGACTTTAAGCCTAGCTCCCTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR CAA 72 bp | GTCCTTATTCAGAGGCCTTTACAGCCAGGTATTGGTTaGGGTTCCTGTCAGCCCAGCCACTATTACTGTCTA | + |
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Preference number: 4 (lower is better) Translates to: VLIQRPLQPGIG*GSCQPSHYYCL Trigger: TAGACAGTAATAGTGGCTGGGCTGACAGGAACCCAAACCAATACCTGGCTGTAAAGGCCTCTGAATAAGGAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR TCA 90 bp | ATAGTCCTGGGAATCAGCCATGGGTTGCTGGGAAGCAGAACTTTTGTGTCTTTTCCGCATAGGGAGCTGTaGTCTGGCTGTTATAACACA | + |
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Preference number: 4 (lower is better) Translates to: IVLGISHGLLGSRTFVSFPHREL*SGCYNT Trigger: TGTGTTATAACAGCCAGATCACAGCTCCCTATGCGG...AAAAGACACAAAAGTTCTGCTTCCCAGCAACCCATGGCTGATTCCCAGGACTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CCA 90 bp | ACCATGTCAGTTTACTTTGAATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGCAGCCTCTGACCTCATaGCTGTCCCATATCCATTCT | + |
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Preference number: 4 (lower is better) Translates to: TMSVYFESRRIPVAHFVEQPLTS*LSHIHS Trigger: AGAATGGATATGGGACAGCCATGAGGTCAGAGGCTG...CTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAAGTAAACTGACATGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| 3UTR CAA 72 bp | CAGACCTATCTTGCTAATTGCTGCTTTCTCAAACATTaGATGATGGAGGAACTCTCCCTTAGAGGACGACTT | + |
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Preference number: 4 (lower is better) Translates to: QTYLANCCFLKH*MMEELSLRGRL Trigger: AAGTCGTCCTCTAAGGGAGAGTTCCTCCATCATCAAATGTTTGAGAAAGCAGCAATTAGCAAGATAGGTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CCA 90 bp | GTTCCCAATGGTGACAGAGGAGGGGACACTGATCGTCGGCTTGGATaGAGGTACAAGCACAGTGAGGTGGATGCTGACCTCCCCGTAGTT | + |
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Preference number: 5 (lower is better) Translates to: VPNGDRGGDTDRRLG*RYKHSEVDADLPVV Trigger: AACTACGGGGAGGTCAGCATCCACCTCACTGTGCTTGTACCTCCATCCAAGCCGACGATCAGTGTCCCCTCCTCTGTCACCATTGGGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CAA 90 bp | ACTTCCTCCGCCCACTTCACGAAATCCCCCTCCAGCACAGCAGCACCTTCCTCGAACGACGAGGTCTGTTaGAATTCCCCCTCACTTCGA | + |
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Preference number: 5 (lower is better) Translates to: TSSAHFTKSPSSTAAPSSNDEVC*NSPSLR Trigger: TCGAAGTGAGGGGGAATTCAAACAGACCTCGTCGTT...CGAGGAAGGTGCTGCTGTGCTGGAGGGGGATTTCGTGAAGTGGGCGGAGGAAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS TCA 90 bp | GTCCTTGAACCAGGAATATTCAGAGGGTGGGGAACCATCATGCTCTaGGCAGGTCAGCACTGCCCTGTTCCCAATGGTGACAGAGGAGGG | + |
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Preference number: 5 (lower is better) Translates to: VLEPGIFRGWGTIML*AGQHCPVPNGDRGG Trigger: CCCTCCTCTGTCACCATTGGGAACAGGGCAGTGCTGACCTGCTCAGAGCATGATGGTTCCCCACCCTCTGAATATTCCTGGTTCAAGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS GCA 90 bp | ATCCCGTCCTTGAACCAGGAATATTCAGAGGGTGGGGAACCATCATaGTCTGAGCAGGTCAGCACTGCCCTGTTCCCAATGGTGACAGAG | + |
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Preference number: 5 (lower is better) Translates to: IPSLNQEYSEGGEPS*SEQVSTALFPMVTE Trigger: CTCTGTCACCATTGGGAACAGGGCAGTGCTGACCTGCTCAGAGCATGATGGTTCCCCACCCTCTGAATATTCCTGGTTCAAGGACGGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CCA 90 bp | CCACATTCAGCTCCACAGCATCCATGTGTGCAGCCTCTGACCTCATaGCTGTCCCATATCCATTCTGGGCCTGGCAGTAGTATTCACCAC | + |
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Preference number: 5 (lower is better) Translates to: PHSAPQHPCVQPLTS*LSHIHSGPGSSIHH Trigger: GTGGTGAATACTACTGCCAGGCCCAGAATGGATATGGGACAGCCATGAGGTCAGAGGCTGCACACATGGATGCTGTGGAGCTGAATGTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CAA 90 bp | TCCACCATGAAGGCCAGGCAGGAGAGTGCACAGACACTTCCTCCGCCCACTTCACAAGTATACTCTCCATaGTCCTTCCGGGTCACAGAA | + |
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Preference number: 5 (lower is better) Translates to: STMKARQESAQTLPPPTSQVYSP*SFRVTE Trigger: TTCTGTGACCCGGAAGGACAATGGAGAGTATACTTG...TGAAGTGGGCGGAGGAAGTGTCTGTGCACTCTCCTGCCTGGCCTTCATGGTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CAA 90 bp | TTTGAATCCAGGAGAATCCCAGTGGCACATTTTGTGGAGACAGAAGAGAGGCTCAAGGCCCGGGTTTTCTaGGCATCTGCTGTAAGCATG | + |
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Preference number: 5 (lower is better) Translates to: FESRRIPVAHFVETEERLKARVF*ASAVSM Trigger: CATGCTTACAGCAGATGCCAAGAAAACCCGGGCCTT...GAGCCTCTCTTCTGTCTCCACAAAATGTGCCACTGGGATTCTCCTGGATTCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS GCA 90 bp | CTCACTTCGAGTACTGGGCTGGCTGTAAATGACCTTCTTACCCGGTaGAGTCCCTTTCTTTGTTCTTTCAAAGTATCCACGGCTATAGGC | + |
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Preference number: 5 (lower is better) Translates to: LTSSTGLAVNDLLTR*SPFLCSFKVSTAIG Trigger: GCCTATAGCCGTGGATACTTTGAAAGAACAAAGAAAGGGACTGCACCGGGTAAGAAGGTCATTTACAGCCAGCCCAGTACTCGAAGTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CAA 90 bp | AAGCAGGGAGCTAGGCTTAAAGTCCTTATTCAGAGGCCTTTACAGCCAGGTATTAACCTGGACGTCAGATaGAGCAGTGTACACCGAACC | + |
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Preference number: 5 (lower is better) Translates to: KQGARLKVLIQRPLQPGINLDVR*SSVHRT Trigger: GGTTCGGTGTACACTGCTCAATCTGACGTCCAGGTT...AATACCTGGCTGTAAAGGCCTCTGAATAAGGACTTTAAGCCTAGCTCCCTGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CAA 90 bp | TTACAGCCAGGTATTGGTTTGGGTTCCTGTCAGCCCAGCCACTATTACTGTCTAAACACACAAGTGCAGTaGTGCTGCCTTGGACGAACT | + |
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Preference number: 5 (lower is better) Translates to: LQPGIGLGSCQPSHYYCLNTQVQ*CCLGRT Trigger: AGTTCGTCCAAGGCAGCACAACTGCACTTGTGTGTT...TAGACAGTAATAGTGGCTGGGCTGACAGGAACCCAAACCAATACCTGGCTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS-3UTR CAA 90 bp | TTACAGCCAGGTATTGGTTTGGGTTCCTGTCAGCCCAGCCACTATTACTGTCTAGTGCAGTCCCTTTCTTaGTTCTTTCAAAGTATCCAC | + |
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Preference number: 5 (lower is better) Translates to: LQPGIGLGSCQPSHYYCLVQSLS*FFQSIH Trigger: GTGGATACTTTGAAAGAACAAAGAAAGGGACTGCAC...TAGACAGTAATAGTGGCTGGGCTGACAGGAACCCAAACCAATACCTGGCTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 90 bp | GCCCTGTTCCCAATGGTGACAGAGGAGGGGACACTGATCGTCGGCTaGGATGGAGGTACAAGCACAGTGAGGTGGATGCTGACCTCCCCG | + |
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Preference number: 6 (lower is better) Translates to: ALFPMVTEEGTLIVG*DGGTSTVRWMLTSP Trigger: CGGGGAGGTCAGCATCCACCTCACTGTGCTTGTACCTCCATCCAAGCCGACGATCAGTGTCCCCTCCTCTGTCACCATTGGGAACAGGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CCA 72 bp | GGTGACAGAGGAGGGGACACTGATCGTCGGCTTGGATaGAGGTACAAGCACAGTGAGGTGGATGCTGACCTC | + |
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Preference number: 6 (lower is better) Translates to: GDRGGDTDRRLG*RYKHSEVDADL Trigger: GAGGTCAGCATCCACCTCACTGTGCTTGTACCTCCATCCAAGCCGACGATCAGTGTCCCCTCCTCTGTCACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CCA 72 bp | GCTCCACAGCATCCATGTGTGCAGCCTCTGACCTCATaGCTGTCCCATATCCATTCTGGGCCTGGCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: APQHPCVQPLTS*LSHIHSGPGSS Trigger: ACTACTGCCAGGCCCAGAATGGATATGGGACAGCCATGAGGTCAGAGGCTGCACACATGGATGCTGTGGAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 72 bp | CCAATGGTGACAGAGGAGGGGACACTGATCGTCGGCTaGGATGGAGGTACAAGCACAGTGAGGTGGATGCTG | + |
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Preference number: 6 (lower is better) Translates to: PMVTEEGTLIVG*DGGTSTVRWML Trigger: CAGCATCCACCTCACTGTGCTTGTACCTCCATCCAAGCCGACGATCAGTGTCCCCTCCTCTGTCACCATTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS TCA 72 bp | CCAGGAATATTCAGAGGGTGGGGAACCATCATGCTCTaGGCAGGTCAGCACTGCCCTGTTCCCAATGGTGAC | + |
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Preference number: 6 (lower is better) Translates to: PGIFRGWGTIML*AGQHCPVPNGD Trigger: GTCACCATTGGGAACAGGGCAGTGCTGACCTGCTCAGAGCATGATGGTTCCCCACCCTCTGAATATTCCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS TCA 72 bp | GGGGAGAGGAGAAGCCAGAGTAGGTGCAGGTCAATTTaGTGGACTCGTTCTCGGGAACCTGGACGTCAGATT | + |
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Preference number: 6 (lower is better) Translates to: GERRSQSRCRSI*WTRSREPGRQI Trigger: AATCTGACGTCCAGGTTCCCGAGAACGAGTCCATCAAATTGACCTGCACCTACTCTGGCTTCTCCTCTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS GCA 72 bp | TTGAACCAGGAATATTCAGAGGGTGGGGAACCATCATaGTCTGAGCAGGTCAGCACTGCCCTGTTCCCAATG | + |
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Preference number: 6 (lower is better) Translates to: LNQEYSEGGEPS*SEQVSTALFPM Trigger: CATTGGGAACAGGGCAGTGCTGACCTGCTCAGAGCATGATGGTTCCCCACCCTCTGAATATTCCTGGTTCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 72 bp | CTGGCTGTTATAACACACAAGTGCAGTTGTGCTGCCTaGGACGAACTTCCACTCCACTCGGGGAGAGGAGAA | + |
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Preference number: 6 (lower is better) Translates to: LAVITHKCSCAA*DELPLHSGRGE Trigger: TTCTCCTCTCCCCGAGTGGAGTGGAAGTTCGTCCAAGGCAGCACAACTGCACTTGTGTGTTATAACAGCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 90 bp | GCCCGGGTTTTCTTGGCATCTGCTGTAAGCATGGATATCCCGTCCTaGAACCAGGAATATTCAGAGGGTGGGGAACCATCATGCTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: ARVFLASAVSMDIPS*NQEYSEGGEPSCSE Trigger: CTCAGAGCATGATGGTTCCCCACCCTCTGAATATTCCTGGTTCAAGGACGGGATATCCATGCTTACAGCAGATGCCAAGAAAACCCGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS TCA 72 bp | ATTCCCCCTCACTTCGAGTACTGGGCTGGCTGTAAATaGCCTTCTTACCCGGTGCAGTCCCTTTCTTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: IPPHFEYWAGCK*PSYPVQSLSLF Trigger: GAACAAAGAAAGGGACTGCACCGGGTAAGAAGGTCATTTACAGCCAGCCCAGTACTCGAAGTGAGGGGGAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 72 bp | TTCTTGGCATCTGCTGTAAGCATGGATATCCCGTCCTaGAACCAGGAATATTCAGAGGGTGGGGAACCATCA | + |
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Preference number: 6 (lower is better) Translates to: FLASAVSMDIPS*NQEYSEGGEPS Trigger: TGATGGTTCCCCACCCTCTGAATATTCCTGGTTCAAGGACGGGATATCCATGCTTACAGCAGATGCCAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 72 bp | ATAGTGAATGAAGAATTCATGAAGGCCCGGGTTTTCTaGGCATCTGCTGTAAGCATGGATATCCCGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: IVNEEFMKARVF*ASAVSMDIPSL Trigger: CAAGGACGGGATATCCATGCTTACAGCAGATGCCAAGAAAACCCGGGCCTTCATGAATTCTTCATTCACTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS CAA 90 bp | TTTGGATCAATAGTGAATGAAGAATTCATGAAGGCCCGGGTTTTCTaGGCATCTGCTGTAAGCATGGATATCCCGTCCTTGAACCAGGAA | + |
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Preference number: 6 (lower is better) Translates to: FGSIVNEEFMKARVF*ASAVSMDIPSLNQE Trigger: TTCCTGGTTCAAGGACGGGATATCCATGCTTACAGCAGATGCCAAGAAAACCCGGGCCTTCATGAATTCTTCATTCACTATTGATCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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| CDS TCA 72 bp | AAAGATCAGATCCCCCGACTTTGGATCAATAGTGAATaGAGAATTCATGAAGGCCCGGGTTTTCTTGGCATC | + |
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Preference number: 6 (lower is better) Translates to: KDQIPRLWINSE*RIHEGPGFLGI Trigger: GATGCCAAGAAAACCCGGGCCTTCATGAATTCTTCATTCACTATTGATCCAAAGTCGGGGGATCTGATCTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000043839.5 |
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