Pregenerated sensors for EXOSC9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027714Ensembl transcript IDs: ENSMUST00000029269.12, ENSMUST00000131316.2, ENSMUST00000136890.2, ENSMUST00000155866.8, ENSMUST00000156100.3
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTGCCATCTGTCCTGGATTaGGTCACTGGGACTCTGAAA | + |
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Preference number: 2 (lower is better) Translates to: QTVYQEVQLVRYPELLALPSVLD*VTGTLK Trigger: TTTCAGAGTCCCAGTGACCCAATCCAGGACAGATGG...CAGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| 3UTR CAA 90 bp | GGAGGTTCAGCTTCAGCAATAATTTCTTCTGCTCTCTCCTCTATGTaGGAGGTATCAATAGGGGCCGTCTCCATTTTAAACGCTGTGATT | + |
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Preference number: 2 (lower is better) Translates to: GGSASAIISSALSSM*EVSIGAVSILNAVI Trigger: AATCACAGCGTTTAAAATGGAGACGGCCCCTATTGATACCTCCAACATAGAGGAGAGAGCAGAAGAAATTATTGCTGAAGCTGAACCTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCTTCCTTCTCAGAATCTTCAAGGTCACCCCAGGAGTTTTCTATTCCGTCTCAACGCTGTGATTCTTTaGTTTGCTATAGACTCTGCA | + |
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Preference number: 2 (lower is better) Translates to: PLPSQNLQGHPRSFLFRLNAVIL*FAIDSA Trigger: TGCAGAGTCTATAGCAAACCAAAGAATCACAGCGTT...GAGACGGAATAGAAAACTCCTGGGGTGACCTTGAAGATTCTGAGAAGGAAGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| 3UTR-3UTR TCA 90 bp | TCCTCTTCCTTCTCAGAATCTTCAAGGTCACCCCAGGAGTTTTCTATTCCGTCTTCTGTATTAGCTCTGTaGTTTCTGCTACTTTCACAC | + |
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Preference number: 2 (lower is better) Translates to: SSSFSESSRSPQEFSIPSSVLAL*FLLLSH Trigger: GTGTGAAAGTAGCAGAAATCACAGAGCTAATACAGA...AGACGGAATAGAAAACTCCTGGGGTGACCTTGAAGATTCTGAGAAGGAAGAGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| 3UTR-3UTR CAA 90 bp | CTGGGCAGTTCCAGGAGTCCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGAAACGCTGTGATTCTTaGGTTTGCTATAGACTCTGC | + |
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Preference number: 3 (lower is better) Translates to: LGSSRSPQHRLRNNFWGRKRCDS*VCYRLC Trigger: GCAGAGTCTATAGCAAACCAAAGAATCACAGCGTTT...CCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACTCCTGGAACTGCCCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| 3UTR TCA 72 bp | GTGCCTTCTGGTTTGCACTGGTCTGAGCTCTGTGAATaGAGTAATATAACAGCTCACTGTATCCCATCTGTC | + |
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Preference number: 3 (lower is better) Translates to: VPSGLHWSELCE*SNITAHCIPSV Trigger: GACAGATGGGATACAGTGAGCTGTTATATTACTTCATTCACAGAGCTCAGACCAGTGCAAACCAGAAGGCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| 3UTR CCA 72 bp | AATATAACAGCTCACTGTATCCCATCTGTCCTGGATTaGGTCACTGGGACTCTGAAAGGTGCCCCATTTTAT | + |
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Preference number: 3 (lower is better) Translates to: NITAHCIPSVLD*VTGTLKGAPFY Trigger: ATAAAATGGGGCACCTTTCAGAGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| 3UTR-3UTR CAA 90 bp | ACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTAAGGTCTTACATGAGTaGGGAAGCTTGTGCAACAGA | + |
|
Preference number: 3 (lower is better) Translates to: TNSVSRSSACKIPRAVSTKVLHE*GSLCNR Trigger: TCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTT...AGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | GAGTCCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGTTCAGCTTCAGCAAGCCAGGCTCAAAAGCTaGAGCAGCCATCTGAGAAAG | + |
|
Preference number: 4 (lower is better) Translates to: ESTAQVEKQLLGEVQLQQARLKS*SSHLRK Trigger: CTTTCTCAGATGGCTGCTCCAGCTTTTGAGCCTGGC...TTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR CCA 90 bp | GAGTCCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGTTCAGCTTCAGCAAATGGTGGATGCTCAATaGCACGGGATCACGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ESTAQVEKQLLGEVQLQQMVDAQ*HGITLF Trigger: GAAGAGCGTGATCCCGTGCCATTGAGCATCCACCAT...TTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR CCA 90 bp | CTGGGCAGTTCCAGGAGTCCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGCTCGATGCTTATTCATaGCAATCACCAGCAAGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LGSSRSPQHRLRNNFWGRLDAYS*QSPASH Trigger: ATGGCTTGCTGGTGATTGCCATGAATAAGCATCGAG...CCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACTCCTGGAACTGCCCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR TCA 90 bp | CTCCAATCTGGGCAGTTCCAGGAGTCCACAGCACAGGTTGAGAAACAACTTCTGTCAGGTCTTCGGAAGTaGCACAAGGCTACAATTGCA | + |
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Preference number: 4 (lower is better) Translates to: LQSGQFQESTAQVEKQLLSGLRK*HKATIA Trigger: TGCAATTGTAGCCTTGTGTCACTTCCGAAGACCTGA...CAGAAGTTGTTTCTCAACCTGTGCTGTGGACTCCTGGAACTGCCCAGATTGGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR CCA 90 bp | CCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCATGGTGGATGCTCAATaGCACGGGATCACGCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: PELLALSMYTHTHTQRSTMVDAQ*HGITLF Trigger: GAAGAGCGTGATCCCGTGCCATTGAGCATCCACCAT...GGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR GCA 90 bp | GAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTAGAGATCTGACTGCCTaGCAGGCTCAAAAGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: ELLALSMYTHTHTQRSTTRDLTA*QAQKLE Trigger: CTCCAGCTTTTGAGCCTGGCAGGCAGTCAGATCTCT...AGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR GCA 90 bp | AGTCCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGTTCAGCTTCAGCAATACACAAGGCTACAATTaGAGCAATGCTAGCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: SPQHRLRNNFWGRFSFSNTQGYN*SNASSI Trigger: GATGCTGCTAGCATTGCTGCAATTGTAGCCTTGTGT...ATTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR CCA 90 bp | ATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTCTGAAATTGAGAAACAACTTCTaGGGGAGGTTCAGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: ITAHCIPSVLDWVTGTLKLRNNF*GRFSFS Trigger: GCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAA...TTTCAGAGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| CDS-3UTR GCA 90 bp | TCAATAGGGGCCGTCTCCATTTTAAACGCTGTGATTCTTTGGTTTGCTATAGACAGAGATCTGACTGCCTaGCAGGCTCAAAAGCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: SIGAVSILNAVILWFAIDRDLTA*QAQKLE Trigger: CTCCAGCTTTTGAGCCTGGCAGGCAGTCAGATCTCT...GTCTATAGCAAACCAAAGAATCACAGCGTTTAAAATGGAGACGGCCCCTATTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR CCA 90 bp | AGATACCCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGACAAATGGGCATATGGTaGATGCTCAATGGCACGGGA | + |
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Preference number: 4 (lower is better) Translates to: RYPELLALSMYTHTHTQRQMGIW*MLNGTG Trigger: TCCCGTGCCATTGAGCATCCACCATATGCCCATTTG...TCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGGGTATCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | AGTCCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGTTCAGCTTCAGCAATGTTCTTCACGTTCATTaGGGTCCACCAATAAGTATG | + |
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Preference number: 4 (lower is better) Translates to: SPQHRLRNNFWGRFSFSNVLHVH*GPPISM Trigger: CATACTTATTGGTGGACCCCAATGAACGTGAAGAAC...ATTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCTTCTCAGAATCTTCAAGGTCACCCCAGGAGTTTTCTATTCCGTCTCTTCCGAATGAGATCCTaGTGTTCCTGTAATCATAGG | + |
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Preference number: 4 (lower is better) Translates to: PLPSQNLQGHPRSFLFRLFRMRS*CSCNHR Trigger: CCTATGATTACAGGAACATCAGGATCTCATTCGGAA...GAGACGGAATAGAAAACTCCTGGGGTGACCTTGAAGATTCTGAGAAGGAAGAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR TCA 90 bp | CCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGTTCAGCTTCAGCAATAATATAATCCGTTCCGAATaGGATCCTGATGTTCCTGTA | + |
|
Preference number: 4 (lower is better) Translates to: PQHRLRNNFWGRFSFSNNIIRSE*DPDVPV Trigger: TACAGGAACATCAGGATCTCATTCGGAACGGATTAT...ATTATTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR TCA 90 bp | ACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTGTCCACAGCACAGGTTaGGAAACAACTTCTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: TNSVSRSSACKIPRAVSTVHSTG*ETTSGG Trigger: TCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGAC...AGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CCA 90 bp | AGACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCAATTCCGTCTCCAATCTaGGCAGTTCCAGGAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RQTVYQEVQLVRYPELLAIPSPI*AVPGVH Trigger: GTGGACTCCTGGAACTGCCCAGATTGGAGACGGAAT...TGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CCA 90 bp | ACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTAGCTTAGTTATTCCGTCTCCAATCTaGGCAGTTCCAGGAGTCCAC | + |
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Preference number: 4 (lower is better) Translates to: TEYVYTHTHTEIHHFSLVIPSPI*AVPGVH Trigger: GTGGACTCCTGGAACTGCCCAGATTGGAGACGGAAT...AACTAAGCTAAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| CDS-3UTR CCA 90 bp | CCCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCCTTCTGGTTTGCACTaGTCTGAGCTCTTATTTTCT | + |
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Preference number: 4 (lower is better) Translates to: PRAVSTEYVYTHTHTEIHPSGLH*SELLFS Trigger: AGAAAATAAGAGCTCAGACCAGTGCAAACCAGAAGG...GTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | CCTCTTCCTTCTCAGAATCTTCAAGGTCACCCCAGGAGTTTTCTATTCCGTCTCGAAAGAAAGCAAAACTaGCACAAATGGGCATATGGT | + |
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Preference number: 4 (lower is better) Translates to: PLPSQNLQGHPRSFLFRLERKQN*HKWAYG Trigger: ACCATATGCCCATTTGTGTCAGTTTTGCTTTCTTTC...GAGACGGAATAGAAAACTCCTGGGGTGACCTTGAAGATTCTGAGAAGGAAGAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR CCA 90 bp | AGATACCCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATTCTTCCTTTTCCCTTaGCCTTTACTTGGTGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: RYPELLALSMYTHTHTQRFFLFP*PLLGAF Trigger: GAAGGCACCAAGTAAAGGCCAAGGGAAAAGGAAGAA...TCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGGGTATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | GCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTTTCCGAATGAGATCCTaGTGTTCCTGTAATCATAGG | + |
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Preference number: 4 (lower is better) Translates to: AVSTEYVYTHTHTEIHHFFRMRS*CSCNHR Trigger: CCTATGATTACAGGAACATCAGGATCTCATTCGGAA...AAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | AGACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCAGCTGGAGCAGCCATCTaGGAAAGCTCAAGGTTAAAA | + |
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Preference number: 4 (lower is better) Translates to: RQTVYQEVQLVRYPELLAAGAAI*ESSRLK Trigger: TTTTAACCTTGAGCTTTCTCAGATGGCTGCTCCAGC...TGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR GCA 90 bp | CCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCAGCAATAATTTCTTCTaGTCTCTCCTCTATGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: PELLALSMYTHTHTQRSTSNNFF*SLLYVG Trigger: TCCAACATAGAGGAGAGAGCAGAAGAAATTATTGCT...GGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR GCA 90 bp | AAGACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCTTGGCCTTTACTTGGTaGCTTCTGGTTTGCACTGGT | + |
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Preference number: 4 (lower is better) Translates to: KTNSVSRSSACKIPRAVSLAFTW*LLVCTG Trigger: ACCAGTGCAAACCAGAAGGCACCAAGTAAAGGCCAA...GCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGTCTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| 3UTR CAA 72 bp | GCTTCAGCAATAATTTCTTCTGCTCTCTCCTCTATGTaGGAGGTATCAATAGGGGCCGTCTCCATTTTAAAC | + |
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Preference number: 4 (lower is better) Translates to: ASAIISSALSSM*EVSIGAVSILN Trigger: GTTTAAAATGGAGACGGCCCCTATTGATACCTCCAACATAGAGGAGAGAGCAGAAGAAATTATTGCTGAAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS-3UTR TCA 90 bp | GCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTGAAAGAAAGCAAAACTaGCACAAATGGGCATATGGT | + |
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Preference number: 4 (lower is better) Translates to: AVSTEYVYTHTHTEIHHFERKQN*HKWAYG Trigger: ACCATATGCCCATTTGTGTCAGTTTTGCTTTCTTTC...AAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR GCA 90 bp | AGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTAGCAATAATTTCTTCTaGTCTCTCCTCTATGTTGGA | + |
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Preference number: 4 (lower is better) Translates to: SNITAHCIPSVLDWVTGTSNNFF*SLLYVG Trigger: TCCAACATAGAGGAGAGAGCAGAAGAAATTATTGCT...AGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| CDS-3UTR CCA 90 bp | TTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCGCCAGGCTCAAAAGCTaGAGCAGCCATCTGAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: LTNKVLHELGSLCNRKVFARLKS*SSHLRK Trigger: CTTTCTCAGATGGCTGCTCCAGCTTTTGAGCCTGGC...GAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | GTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTAGCAACGCTGTGATTCTTTaGTTTGCTATAGACTCTGCA | + |
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Preference number: 4 (lower is better) Translates to: VSTEYVYTHTHTEIHHFSNAVIL*FAIDSA Trigger: TGCAGAGTCTATAGCAAACCAAAGAATCACAGCGTT...GCTAAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | AAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCAGAAAGTTTTGAGAAACAACTTCTaGGGGAGGTTCAGCTTCAGC | + |
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Preference number: 4 (lower is better) Translates to: KVLHELGSLCNRKVFQKVLRNNF*GRFSFS Trigger: GCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAA...AACTTTCTGGAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | AGTAATATAACAGCTCACTGTATCCCATCTGTCCTGGATTGGGTCACTGGGACTCTTTGGGTTCTTCTCTaGCTCCAAAATAATCATTTC | + |
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Preference number: 4 (lower is better) Translates to: SNITAHCIPSVLDWVTGTLWVLL*LQNNHF Trigger: GAAATGATTATTTTGGAGCCAGAGAAGAACCCAAAG...AGTCCCAGTGACCCAATCCAGGACAGATGGGATACAGTGAGCTGTTATATTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| CDS-3UTR TCA 90 bp | CAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTGTTGTATCATCAAGAATaGCAGCTTCATCAATGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QTVYQEVQLVRYPELLALLYHQE*QLHQCH Trigger: GTGGCATTGATGAAGCTGTCATTCTTGATGATACAA...CAGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CCA 90 bp | ACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTGTTCTTCACGTTCATTaGGGTCCACCAATAAGTATG | + |
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Preference number: 4 (lower is better) Translates to: TNSVSRSSACKIPRAVSTVLHVH*GPPISM Trigger: CATACTTATTGGTGGACCCCAATGAACGTGAAGAAC...AGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | ACTTTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTCAGGTCTTCGGAAGTaGCACAAGGCTACAATTGCA | + |
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Preference number: 4 (lower is better) Translates to: TLTNKVLHELGSLCNRKVSGLRK*HKATIA Trigger: TGCAATTGTAGCCTTGTGTCACTTCCGAAGACCTGA...AACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAAAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | AGACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCATTGTATCATCAAGAATaGCAGCTTCATCAATGCCAC | + |
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Preference number: 4 (lower is better) Translates to: RQTVYQEVQLVRYPELLALYHQE*QLHQCH Trigger: GTGGCATTGATGAAGCTGTCATTCTTGATGATACAA...TGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CCA 90 bp | ACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTCTGCATCTGAAAACCTaGTCTTTAAGCAGCATTATC | + |
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Preference number: 4 (lower is better) Translates to: TNSVSRSSACKIPRAVSTLHLKT*SLSSII Trigger: GATAATGCTGCTTAAAGACCAGGTTTTCAGATGCAG...AGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR GCA 90 bp | TTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCACACAAGGCTACAATTaGAGCAATGCTAGCAGCATC | + |
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Preference number: 4 (lower is better) Translates to: LTNKVLHELGSLCNRKVFTQGYN*SNASSI Trigger: GATGCTGCTAGCATTGCTGCAATTGTAGCCTTGTGT...GAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR GCA 90 bp | ACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCACTGTACAAATTTCTCGATaGTTATTCATGGCAATCACC | + |
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Preference number: 4 (lower is better) Translates to: TNSVSRSSACKIPRAVSTVQISR*LFMAIT Trigger: GGTGATTGCCATGAATAAGCATCGAGAAATTTGTAC...AGTGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | ACTTTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTCTCGATGCTTATTCATaGCAATCACCAGCAAGCCAT | + |
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Preference number: 4 (lower is better) Translates to: TLTNKVLHELGSLCNRKVLDAYS*QSPASH Trigger: ATGGCTTGCTGGTGATTGCCATGAATAAGCATCGAG...AACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAAAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | TTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCATAATCCGTTCCGAATaGGATCCTGATGTTCCTGTA | + |
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Preference number: 4 (lower is better) Translates to: LTNKVLHELGSLCNRKVFIIRSE*DPDVPV Trigger: TACAGGAACATCAGGATCTCATTCGGAACGGATTAT...GAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR TCA 90 bp | TTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCTCTGTATTAGCTCTGTaGTTTCTGCTACTTTCACAC | + |
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Preference number: 4 (lower is better) Translates to: LTNKVLHELGSLCNRKVFSVLAL*FLLLSH Trigger: GTGTGAAAGTAGCAGAAATCACAGAGCTAATACAGA...GAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CCA 90 bp | TTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCTTTGGGTTCTTCTCTaGCTCCAAAATAATCATTTC | + |
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Preference number: 4 (lower is better) Translates to: LTNKVLHELGSLCNRKVFLWVLL*LQNNHF Trigger: GAAATGATTATTTTGGAGCCAGAGAAGAACCCAAAG...GAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS TCA 90 bp | CCAGTTCCACAATACAGCATCCATAATCCGTTCCGAATGAGATCCTaGTGTTCCTGTAATCATAGGTCTGTCTGCCGTCCAGGCGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: PVPQYSIHNPFRMRS*CSCNHRSVCRPGAS Trigger: AGAAGCGCCTGGACGGCAGACAGACCTATGATTACAGGAACATCAGGATCTCATTCGGAACGGATTATGGATGCTGTATTGTGGAACTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000155866.8 |
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| CDS-3UTR CAA 90 bp | GAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTAGTCCACAGCACAGGTaGAGAAACAACTTCTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: ELLALSMYTHTHTQRSTTSPQHR*RNNFWG Trigger: CCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACT...AGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CAA 90 bp | CCACAGCACAGGTTGAGAAACAACTTCTGGGGGAGGTTCAGCTTCAGCAATAATTGTTACTTCCTCTCCTaGGACAGAGACATCAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: PQHRLRNNFWGRFSFSNNCYFLS*DRDIRS Trigger: AGACCTGATGTCTCTGTCCAAGGAGAGGAAGTAACA...ATTATTGCTGAAGCTGAACCTCCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS TCA 90 bp | TGTTTTTCCCAGTTCCACAATACAGCATCCATAATCCGTTCCGAATaGGATCCTGATGTTCCTGTAATCATAGGTCTGTCTGCCGTCCAG | + |
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Preference number: 5 (lower is better) Translates to: CFSQFHNTASIIRSE*DPDVPVIIGLSAVQ Trigger: CTGGACGGCAGACAGACCTATGATTACAGGAACATCAGGATCTCATTCGGAACGGATTATGGATGCTGTATTGTGGAACTGGGAAAAACA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000155866.8 |
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| CDS-3UTR CAA 90 bp | GCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTTGTTACTTCCTCTCCTaGGACAGAGACATCAGGTCT | + |
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Preference number: 5 (lower is better) Translates to: AVSTEYVYTHTHTEIHHFCYFLS*DRDIRS Trigger: AGACCTGATGTCTCTGTCCAAGGAGAGGAAGTAACA...AAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CAA 90 bp | ACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTAGCTTAGTTAGTCCACAGCACAGGTaGAGAAACAACTTCTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: TEYVYTHTHTEIHHFSLVSPQHR*RNNFWG Trigger: CCCCCAGAAGTTGTTTCTCAACCTGTGCTGTGGACT...AACTAAGCTAAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000131316.2 |
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| CDS-3UTR CAA 90 bp | AGATACCCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGACACTATAGGGGCACCTaGACTCCCAATATCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: RYPELLALSMYTHTHTQRHYRGT*TPNIRN Trigger: GTTTCTGATATTGGGAGTCAAGGTGCCCCTATAGTG...TCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGGGTATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CAA 90 bp | GTAAGATACCCAGAGCTGTTAGCACTGAGTATGTATACACACACACACACACAGCACTATAGGGGCACCTaGACTCCCAATATCAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: VRYPELLALSMYTHTHTQHYRGT*TPNIRN Trigger: GTTTCTGATATTGGGAGTCAAGGTGCCCCTATAGTG...CTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGCTCTGGGTATCTTAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000131316.2 |
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| CDS-3UTR CAA 90 bp | GTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTAGCCTTCTTCCTTTTCCCTaGGCCTTTACTTGGTGCCTT | + |
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Preference number: 5 (lower is better) Translates to: VSTEYVYTHTHTEIHHFSLLPFP*AFTWCL Trigger: AAGGCACCAAGTAAAGGCCAAGGGAAAAGGAAGAAG...GCTAAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS TCA 90 bp | AGTGTTACTTCCTCTCCTTGGACAGAGACATCAGGTCTTCGGAAGTaGCACAAGGCTACAATTGCAGCAATGCTAGCAGCATCAATAATA | + |
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Preference number: 5 (lower is better) Translates to: SVTSSPWTETSGLRK*HKATIAAMLAASII Trigger: TATTATTGATGCTGCTAGCATTGCTGCAATTGTAGCCTTGTGTCACTTCCGAAGACCTGATGTCTCTGTCCAAGGAGAGGAAGTAACACT 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS CCA 90 bp | TGGCAATCACCAGCAAGCCATCCATTACTCGTTCTTCACGTTCATTaGGGTCCACCAATAAGTATGTTCCTTGCTGAAAGAAAGCAAAAC | + |
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Preference number: 5 (lower is better) Translates to: WQSPASHPLLVLHVH*GPPISMFLAERKQN Trigger: GTTTTGCTTTCTTTCAGCAAGGAACATACTTATTGGTGGACCCCAATGAACGTGAAGAACGAGTAATGGATGGCTTGCTGGTGATTGCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS-3UTR CAA 90 bp | GCTGTTAGCACTGAGTATGTATACACACACACACACACAGAGATCCACCACTTTGAGCTCTTATTTTCTTaGGGTTCTTCTCTGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: AVSTEYVYTHTHTEIHHFELLFS*GSSLAP Trigger: TGGAGCCAGAGAAGAACCCAAAGAAAATAAGAGCTC...AAAGTGGTGGATCTCTGTGTGTGTGTGTGTGTATACATACTCAGTGCTAACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CAA 90 bp | CCTCTTCCTTCTCAGAATCTTCAAGGTCACCCCAGGAGTTTTCTATTCCGTCTCCAGTGTCTATACACTTaGAATTTCGTAGACACCTTT | + |
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Preference number: 5 (lower is better) Translates to: PLPSQNLQGHPRSFLFRLQCLYT*NFVDTF Trigger: AAAGGTGTCTACGAAATTCAAAGTGTATAGACACTG...GAGACGGAATAGAAAACTCCTGGGGTGACCTTGAAGATTCTGAGAAGGAAGAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000155866.8 |
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| CDS TCA 90 bp | CATCTGAAAACCTGGTCTTTAAGCAGCATTATCCCACCACTAGACTaGATAGTACAAATTTCTCGATGCTTATTCATGGCAATCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: HLKTWSLSSIIPPLD*IVQISRCLFMAITS Trigger: GCTGGTGATTGCCATGAATAAGCATCGAGAAATTTGTACTATTCAGTCTAGTGGTGGGATAATGCTGCTTAAAGACCAGGTTTTCAGATG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000156100.3 |
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| CDS-3UTR CAA 90 bp | AGACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCAAAACGCTGTGATTCTTaGGTTTGCTATAGACTCTGC | + |
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Preference number: 5 (lower is better) Translates to: RQTVYQEVQLVRYPELLAKRCDS*VCYRLC Trigger: GCAGAGTCTATAGCAAACCAAAGAATCACAGCGTTT...TGCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CAA 90 bp | AAGACAAACAGTGTATCAAGAAGTTCAGCTTGTAAGATACCCAGAGCTGTTAGCCAGTGTCTATACACTTaGAATTTCGTAGACACCTTT | + |
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Preference number: 5 (lower is better) Translates to: KTNSVSRSSACKIPRAVSQCLYT*NFVDTF Trigger: AAAGGTGTCTACGAAATTCAAAGTGTATAGACACTG...GCTAACAGCTCTGGGTATCTTACAAGCTGAACTTCTTGATACACTGTTTGTCTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS-3UTR CAA 90 bp | TTAACAAATAAGGTCTTACATGAGTTGGGAAGCTTGTGCAACAGAAAAGTTTTCCGTTCTTCACGTTCATaGGGGTCCACCAATAAGTAT | + |
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Preference number: 5 (lower is better) Translates to: LTNKVLHELGSLCNRKVFRSSRS*GSTNKY Trigger: ATACTTATTGGTGGACCCCAATGAACGTGAAGAACG...GAAAACTTTTCTGTTGCACAAGCTTCCCAACTCATGTAAGACCTTATTTGTTAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS GCA 72 bp | GGTCTGTCTGCCGTCCAGGCGCTTCTTCTCCTCAATTaGGCGGAGCAGGAAGCGGCGCTCACAGTTGGAAAG | + |
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Preference number: 6 (lower is better) Translates to: GLSAVQALLLLN*AEQEAALTVGK Trigger: CTTTCCAACTGTGAGCGCCGCTTCCTGCTCCGCGCAATTGAGGAGAAGAAGCGCCTGGACGGCAGACAGACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000155866.8 |
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| CDS CAA 72 bp | AGGTCTGTCTGCCGTCCAGGCGCTTCTTCTCCTCAATaGCGCGGAGCAGGAAGCGGCGCTCACAGTTGGAAA | + |
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Preference number: 6 (lower is better) Translates to: RSVCRPGASSPQ*RGAGSGAHSWK Trigger: TTTCCAACTGTGAGCGCCGCTTCCTGCTCCGCGCAATTGAGGAGAAGAAGCGCCTGGACGGCAGACAGACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000155866.8 |
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| CDS TCA 72 bp | TCCTCTCCTTGGACAGAGACATCAGGTCTTCGGAAGTaGCACAAGGCTACAATTGCAGCAATGCTAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: SSPWTETSGLRK*HKATIAAMLAA Trigger: TGCTGCTAGCATTGCTGCAATTGTAGCCTTGTGTCACTTCCGAAGACCTGATGTCTCTGTCCAAGGAGAGGA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS CAA 72 bp | ACGCTCTTCAGGGGTATACAGTGTTACTTCCTCTCCTaGGACAGAGACATCAGGTCTTCGGAAGTGACACAA | + |
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Preference number: 6 (lower is better) Translates to: TLFRGIQCYFLS*DRDIRSSEVTQ Trigger: TTGTGTCACTTCCGAAGACCTGATGTCTCTGTCCAAGGAGAGGAAGTAACACTGTATACCCCTGAAGAGCGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS TCA 72 bp | CAATACAGCATCCATAATCCGTTCCGAATGAGATCCTaGTGTTCCTGTAATCATAGGTCTGTCTGCCGTCCA | + |
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Preference number: 6 (lower is better) Translates to: QYSIHNPFRMRS*CSCNHRSVCRP Trigger: TGGACGGCAGACAGACCTATGATTACAGGAACATCAGGATCTCATTCGGAACGGATTATGGATGCTGTATTG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000155866.8 |
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| CDS GCA 72 bp | CCTTTTCCCTTGGCCTTTACTTGGTGCCTTCTGGTTTaGACTGGTCTGAGCTCTTATTTTCTTTGGGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: PFPLAFTWCLLV*TGLSSYFLWVL Trigger: AAGAACCCAAAGAAAATAAGAGCTCAGACCAGTGCAAACCAGAAGGCACCAAGTAAAGGCCAAGGGAAAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS CCA 72 bp | CCAGCAAGCCATCCATTACTCGTTCTTCACGTTCATTaGGGTCCACCAATAAGTATGTTCCTTGCTGAAAGA | + |
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Preference number: 6 (lower is better) Translates to: PASHPLLVLHVH*GPPISMFLAER Trigger: TCTTTCAGCAAGGAACATACTTATTGGTGGACCCCAATGAACGTGAAGAACGAGTAATGGATGGCTTGCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS CCA 72 bp | CCAGCAAGCCATCCATTACTCGTTCTTCACGTTCATTaGGGTCCACCAATAAGTATGTTCCTTGCTGAAAGN | + |
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Preference number: 6 (lower is better) Translates to: PASHPLLVLHVH*GPPISMFLAEX Trigger: NCTTTCAGCAAGGAACATACTTATTGGTGGACCCCAATGAACGTGAAGAACGAGTAATGGATGGCTTGCTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000156100.3 |
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| CDS CAA 72 bp | TCCTTTTCCCTTGGCCTTTACTTGGTGCCTTCTGGTTaGCACTGGTCTGAGCTCTTATTTTCTTTGGGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SFSLGLYLVPSG*HWSELLFSLGS Trigger: AGAACCCAAAGAAAATAAGAGCTCAGACCAGTGCAAACCAGAAGGCACCAAGTAAAGGCCAAGGGAAAAGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000029269.12 |
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| CDS GCA 72 bp | GACATCAGGTCTTCGGAAGTGACACAAGGCTACAATTaGAGCAATGCTAGCAGCATCAATAATATTCCCATC | + |
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Preference number: 6 (lower is better) Translates to: DIRSSEVTQGYN*SNASSINNIPI Trigger: GATGGGAATATTATTGATGCTGCTAGCATTGCTGCAATTGTAGCCTTGTGTCACTTCCGAAGACCTGATGTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS CAA 90 bp | CCTTTTCACCAGCGACAACACAGAGAGATTCAGTGTCTATACACTTaGAATTTCGTAGACACCTTTCTAAGAGTCGATTCAGCTTCACCA | + |
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Preference number: 6 (lower is better) Translates to: PFHQRQHREIQCLYT*NFVDTFLRVDSASP Trigger: TGGTGAAGCTGAATCGACTCTTAGAAAGGTGTCTACGAAATTCAAAGTGTATAGACACTGAATCTCTCTGTGTTGTCGCTGGTGAAAAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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| CDS TCA 72 bp | ACCTGGTCTTTAAGCAGCATTATCCCACCACTAGACTaGATAGTACAAATTTCTCGATGCTTATTCATGGCA | + |
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Preference number: 6 (lower is better) Translates to: TWSLSSIIPPLD*IVQISRCLFMA Trigger: TGCCATGAATAAGCATCGAGAAATTTGTACTATTCAGTCTAGTGGTGGGATAATGCTGCTTAAAGACCAGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000029269.12 ENSMUST00000156100.3 |
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| CDS CAA 72 bp | CAGCGACAACACAGAGAGATTCAGTGTCTATACACTTaGAATTTCGTAGACACCTTTCTAAGAGTCGATTCA | + |
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Preference number: 6 (lower is better) Translates to: QRQHREIQCLYT*NFVDTFLRVDS Trigger: TGAATCGACTCTTAGAAAGGTGTCTACGAAATTCAAAGTGTATAGACACTGAATCTCTCTGTGTTGTCGCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000029269.12 ENSMUST00000136890.2 ENSMUST00000155866.8 |
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