Pregenerated sensors for EXOSC8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027752

Ensembl transcript IDs: ENSMUST00000029316.16, ENSMUST00000153224.2, ENSMUST00000154787.8

Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TCCCACCTGGCTTGTGAAGACAGCACAGCTTGCCGTCCTCGTCCGTaGCTACGGTTAGGGTTCCTGTGGACAGGTGCTCCTCCTCGCCGG	+
Preference number: 5 (lower is better) Translates to: SHLACEDSTACRPRP*LRLGFLWTGAPPRR Trigger: CCGGCGAGGAGGAGCACCTGTCCACAGGAACCCTAACCGTAGTCACGGACGAGGACGGCAAGCTGTGCTGTCTTCACAAGCCAGGTGGGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029316.16
CDS TCA 90 bp	AGGTCACAGTATAGAACCCAAGCAAGTTGTCAACGACATCTGCAATaGACTGGCTGGTTACTTGAGCCTCTTCCCCAGGAGGTCCTGTCC	+
Preference number: 5 (lower is better) Translates to: RSQYRTQASCQRHLQ*TGWLLEPLPQEVLS Trigger: GGACAGGACCTCCTGGGGAAGAGGCTCAAGTAACCAGCCAGTTCATTGCAGATGTCGTTGACAACTTGCTTGGGTTCTATACTGTGACCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154787.8
CDS GCA 90 bp	ATTAGGGACGACATATCCTCTATCGGGGGCATCTACTGGTGGTGCTaGAAATTCTGCTTTAACGCCACAAATGACCGTGGTATTCCCCAG	+
Preference number: 5 (lower is better) Translates to: IRDDISSIGGIYWWC*KFCFNATNDRGIPQ Trigger: CTGGGGAATACCACGGTCATTTGTGGCGTTAAAGCAGAATTTGCAGCACCACCAGTAGATGCCCCCGATAGAGGATATGTCGTCCCTAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000029316.16 ENSMUST00000154787.8
CDS GCA 90 bp	CACATTAGGGACGACATATCCTCTATCGGGGGCATCTACTGGTGGTaGTGCAAATTCTGCTTTAACGCCACAAATGACCGTGGTATTCCC	+
Preference number: 5 (lower is better) Translates to: HIRDDISSIGGIYWW*CKFCFNATNDRGIP Trigger: GGGAATACCACGGTCATTTGTGGCGTTAAAGCAGAATTTGCAGCACCACCAGTAGATGCCCCCGATAGAGGATATGTCGTCCCTAATGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000029316.16 ENSMUST00000154787.8
CDS GCA 90 bp	AAGAAACACGACATATCCTCTATCGGGGGCATCTACTGGTGGTGCTaGAAATTCTGCTTTAACGCCACAAATGACCGTGGTATTCCCCAG	+
Preference number: 5 (lower is better) Translates to: KKHDISSIGGIYWWC*KFCFNATNDRGIPQ Trigger: CTGGGGAATACCACGGTCATTTGTGGCGTTAAAGCAGAATTTGCAGCACCACCAGTAGATGCCCCCGATAGAGGATATGTCGTGTTTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153224.2
CDS TCA 72 bp	GCTTGTGAAGACAGCACAGCTTGCCGTCCTCGTCCGTaGCTACGGTTAGGGTTCCTGTGGACAGGTGCTCCT	+
Preference number: 6 (lower is better) Translates to: ACEDSTACRPRP*LRLGFLWTGAP Trigger: AGGAGCACCTGTCCACAGGAACCCTAACCGTAGTCACGGACGAGGACGGCAAGCTGTGCTGTCTTCACAAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029316.16
CDS GCA 72 bp	GACATATCCTCTATCGGGGGCATCTACTGGTGGTGCTaGAAATTCTGCTTTAACGCCACAAATGACCGTGGT	+
Preference number: 6 (lower is better) Translates to: DISSIGGIYWWC*KFCFNATNDRG Trigger: ACCACGGTCATTTGTGGCGTTAAAGCAGAATTTGCAGCACCACCAGTAGATGCCCCCGATAGAGGATATGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000029316.16 ENSMUST00000153224.2 ENSMUST00000154787.8
CDS TCA 72 bp	TATAGAACCCAAGCAAGTTGTCAACGACATCTGCAATaGACTGGCTGGTTACTTGAGCCTCTTCCCCAGGAG	+
Preference number: 6 (lower is better) Translates to: YRTQASCQRHLQ*TGWLLEPLPQE Trigger: CTCCTGGGGAAGAGGCTCAAGTAACCAGCCAGTTCATTGCAGATGTCGTTGACAACTTGCTTGGGTTCTATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000154787.8
CDS GCA 72 bp	TGTGTCTCATGCTCTGAATTACTTCATCCAGTAGCTTaGTCACTTCTTTGTGTCTCGTTACCGCTCGACTCA	+
Preference number: 6 (lower is better) Translates to: CVSCSELLHPVA*SLLCVSLPLDS Trigger: TGAGTCGAGCGGTAACGAGACACAAAGAAGTGAGCAAGCTACTGGATGAAGTAATTCAGAGCATGAGACACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000029316.16