Pregenerated sensors for EXOSC7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025785Ensembl transcript IDs: ENSMUST00000026891.5, ENSMUST00000215377.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAACTGTGTGACCCAGCTTaGCTCTGGCAGACCCACTGG | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWRELCDPA*LWQTHW Trigger: CCAGTGGGTCTGCCAGAGTCAAGCTGGGTCACACAG...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAACTCTGCAAGGACACGTaGAGCACCTTGCCCACTCGC | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWRELCKDT*STLPTR Trigger: GCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAG...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR TCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAAAGTGCTCTCGAGGACTaGTGCAGAGGGACCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWRESALED*CRGTSG Trigger: ACCTGAGGTCCCTCTGCATCAGTCCTCGAGAGCACT...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR TCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAAGAACAGGCCTCCTCTTaGAGTGTGGCATCTACCACA | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWREEQASS*SVASTT Trigger: TGTGGTAGATGCCACACTTCAAGAGGAGGCCTGTTC...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAACAGCTCAATGTCCTTTaGCCCCTCTTCATCCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWREQLNVL*PLFILQ Trigger: CTGGAGGATGAAGAGGGGGCAAAGGACATTGAGCTG...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAATCACTACTCCCTTGCTaGTCACTGACACCAGCAAGC | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWRESLLPC*SLTPAS Trigger: GCTTGCTGGTGTCAGTGACCAGCAAGGGAGTAGTGA...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR TCA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAACAATCTTGCACAGGGTaGCAATGCAGGGGACATTCT | + |
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Preference number: 4 (lower is better) Translates to: IYKPVSMKSEATNVQWREQSCTG*QCRGHS Trigger: AGAATGTCCCCTGCATTGTCACCCTGTGCAAGATTG...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCCTCCTCTTGAAGTGTaGCATCTACCACATGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVPPLEV*HLPHAG Trigger: GCCGGCATGTGGTAGATGCCACACTTCAAGAGGAGG...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCGGTGTCCCCATTTCTaGTTTCACTCCCACCAAGAT | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVRCPHF*FHSHQD Trigger: ATCTTGGTGGGAGTGAAAGCAGAAATGGGGACACCG...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGTATAGAACCCAGCAGTaGTCTCGAGGACTGATGCAG | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVYRTQQ*SRGLMQ Trigger: CTGCATCAGTCCTCGAGAGCACTGCTGGGTTCTATA...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGATGTCACTACTCCCTTaGTGGTCACTGACACCAGCA | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVMSLLP*WSLTPA Trigger: TGCTGGTGTCAGTGACCAGCAAGGGAGTAGTGACAT...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGTCCCCACTTTCCTCATaGATGTCACTACTCCCTTGC | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVSPLSS*MSLLPC Trigger: GCAAGGGAGTAGTGACATGCATGAGGAAAGTGGGGA...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR GCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCCATCATCTCGAAGATaGTCTCAGGATCCAGGCTTC | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVPSSRR*SQDPGF Trigger: GAAGCCTGGATCCTGAGAGCATCTTCGAGATGATGG...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR TCA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGTGGGGTAGCATTGGCTaGACAGTCAACAAAGAACTC | + |
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Preference number: 4 (lower is better) Translates to: IKRNIYKPVSMKSEATNVWGSIG*TVNKEL Trigger: GAGTTCTTTGTTGACTGTTCAGCCAATGCTACCCCA...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 90 bp | GTAGTCCTCACAGCCACGGCCATCCACCCGAAGGTCTTCACTCGCTaGAGCACTAAGCCTCGGGCGTCCGTCCTGACCACGTGGCCGCCC | + |
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Preference number: 5 (lower is better) Translates to: VVLTATAIHPKVFTR*STKPRASVLTTWPP Trigger: GGGCGGCCACGTGGTCAGGACGGACGCCCGAGGCTTAGTGCTGCAGCGAGTGAAGACCTTCGGGTGGATGGCCGTGGCTGTGAGGACTAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215377.2 |
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| CDS GCA 90 bp | CTCGGCCTCTTGGGCCCCAGGCTTTCTTCCTTGTGCAGAAGGCTCTaGAAGGACACGTGCAGCACCTTGCCCACTCGCTTGCTGCTCTCC | + |
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Preference number: 5 (lower is better) Translates to: LGLLGPRLSSLCRRL*KDTCSTLPTRLLLS Trigger: GGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAAGCCTGGGGCCCAAGAGGCCGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS TCA 90 bp | CTGGTCACTGACACCAGCAAGCTGGCCAGGGAACAGGCCTCCTCTTaGAGTGTGGCATCTACCACATGCCGGCAGCCAATCTTGCACAGG | + |
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Preference number: 5 (lower is better) Translates to: LVTDTSKLAREQASS*SVASTTCRQPILHR Trigger: CCTGTGCAAGATTGGCTGCCGGCATGTGGTAGATGCCACACTTCAAGAGGAGGCCTGTTCCCTGGCCAGCTTGCTGGTGTCAGTGACCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 90 bp | GGCCCCAGGCTTTCTTCCTTGTGCAGAAGGCTCTGCAAGGACACGTaGAGCACCTTGCCCACTCGCTTGCTGCTCTCCATCATCTCGAAG | + |
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Preference number: 5 (lower is better) Translates to: GPRLSSLCRRLCKDT*STLPTRLLLSIISK Trigger: CTTCGAGATGATGGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAAGCCTGGGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 90 bp | CCAGGCTTCCTTTCCCCACTTTCCTCATGCATGTCACTACTCCCTTaGTGGTCACTGACACCAGCAAGCTGGCCAGGGAACAGGCCTCCT | + |
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Preference number: 5 (lower is better) Translates to: PGFLSPLSSCMSLLP*WSLTPASWPGNRPP Trigger: AGGAGGCCTGTTCCCTGGCCAGCTTGCTGGTGTCAGTGACCAGCAAGGGAGTAGTGACATGCATGAGGAAAGTGGGGAAAGGAAGCCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 90 bp | TTTCTTCCTTGTGCAGAAGGCTCTGCAAGGACACGTGCAGCACCTTaGCCACTCGCTTGCTGCTCTCCATCATCTCGAAGATGCTCTCAG | + |
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Preference number: 5 (lower is better) Translates to: FLPCAEGSARTRAAP*PLACCSPSSRRCSQ Trigger: CTGAGAGCATCTTCGAGATGATGGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS TCA 90 bp | TTCGGTGTCCCCATTTCTGCTTTCACTCCCACCAAGATGTCTGTGTaGCCCAGCTTGACTCTGGCAGACCCACTGGTGTTAGACACCACA | + |
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Preference number: 5 (lower is better) Translates to: FGVPISAFTPTKMSV*PSLTLADPLVLDTT Trigger: TGTGGTGTCTAACACCAGTGGGTCTGCCAGAGTCAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACACCGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026891.5 ENSMUST00000215377.2 |
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| CDS GCA 90 bp | CAGGTAGCCTTCATTCGGTTTCTCCAGCTTCGGTGTCCCCATTTCTaGTTTCACTCCCACCAAGATGTCTGTGTGACCCAGCTTGACTCT | + |
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Preference number: 5 (lower is better) Translates to: QVAFIRFLQLRCPHF*FHSHQDVCVTQLDS Trigger: AGAGTCAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACACCGAAGCTGGAGAAACCGAATGAAGGCTACCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026891.5 ENSMUST00000215377.2 |
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| CDS-3UTR CAA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAACCCAGGCTTTCTTCCTaGTGCAGAAGGCTCTGCAAG | + |
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Preference number: 5 (lower is better) Translates to: IYKPVSMKSEATNVQWREPRLSS*CRRLCK Trigger: CTTGCAGAGCCTTCTGCACAAGGAAGAAAGCCTGGG...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CAA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCCGACTCTCGGCCTCTaGGGCCCCAGGCTTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: IKRNIYKPVSMKSEATNVPTLGL*GPRLSS Trigger: GGAAGAAAGCCTGGGGCCCAAGAGGCCGAGAGTCGG...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CAA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAAACAGCTCAATGTCCTTaGCCCCCTCTTCATCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: IYKPVSMKSEATNVQWRETAQCP*PPLHPP Trigger: TGGAGGATGAAGAGGGGGCAAAGGACATTGAGCTGT...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CAA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGTGCCGGCAGCCAATCTaGCACAGGGTGACAATGCAG | + |
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Preference number: 5 (lower is better) Translates to: IKRNIYKPVSMKSEATNVCRQPI*HRVTMQ Trigger: CTGCATTGTCACCCTGTGCAAGATTGGCTGCCGGCA...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CAA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGGGAACAGGCCTCCTCTaGAAGTGTGGCATCTACCAC | + |
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Preference number: 5 (lower is better) Translates to: IKRNIYKPVSMKSEATNVGTGLL*KCGIYH Trigger: GTGGTAGATGCCACACTTCAAGAGGAGGCCTGTTCC...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CAA 90 bp | ATTAAGAGAAATATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCATGTCACTACTCCCTaGCTGGTCACTGACACCAGC | + |
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Preference number: 5 (lower is better) Translates to: IKRNIYKPVSMKSEATNVHVTTP*LVTDTS Trigger: GCTGGTGTCAGTGACCAGCAAGGGAGTAGTGACATG...CACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATATATTTCTCTTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS-3UTR CAA 90 bp | ATATACAAACCAGTGTCAATGAAAAGTGAGGCAACCAACGTGCAGTGGAGAGAACTTGGTATCCTTGTGTaGAAGAGAGCAGCTTTTACA | + |
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Preference number: 5 (lower is better) Translates to: IYKPVSMKSEATNVQWRELGILV*KRAAFT Trigger: TGTAAAAGCTGCTCTCTTCAACACAAGGATACCAAG...TTCTCTCCACTGCACGTTGGTTGCCTCACTTTTCATTGACACTGGTTTGTATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS CCA 72 bp | CCACGTGGCCGCCCCGCACCTCCTCCCTGCGCAATATaGCCTGCACTCGCGGCCGCCACCGCTACCTGCACT | + |
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Preference number: 6 (lower is better) Translates to: PRGRPAPPPCAI*PALAAATATCT Trigger: AGTGCAGGTAGCGGTGGCGGCCGCGAGTGCAGGCCATATTGCGCAGGGAGGAGGTGCGGGGCGGCCACGTGG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215377.2 |
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| CDS TCA 72 bp | TCACTCGCTGCAGCACTAAGCCTCGGGCGTCCGTCCTaGCCACGTGGCCGCCCCGCACCTCCTCCCTGCGCA | + |
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Preference number: 6 (lower is better) Translates to: SLAAALSLGRPS*PRGRPAPPPCA Trigger: TGCGCAGGGAGGAGGTGCGGGGCGGCCACGTGGTCAGGACGGACGCCCGAGGCTTAGTGCTGCAGCGAGTGA 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000215377.2 |
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| CDS GCA 72 bp | ACAGCCACGGCCATCCACCCGAAGGTCTTCACTCGCTaGAGCACTAAGCCTCGGGCGTCCGTCCTGACCACG | + |
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Preference number: 6 (lower is better) Translates to: TATAIHPKVFTR*STKPRASVLTT Trigger: CGTGGTCAGGACGGACGCCCGAGGCTTAGTGCTGCAGCGAGTGAAGACCTTCGGGTGGATGGCCGTGGCTGT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000215377.2 |
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| CDS CAA 90 bp | CCCAGGAACCCGACTCTCGGCCTCTTGGGCCCCAGGCTTTCTTCCTaGTGCAGAAGGCTCTGCAAGGACACGTGCAGCACCTTGCCCACT | + |
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Preference number: 6 (lower is better) Translates to: PRNPTLGLLGPRLSS*CRRLCKDTCSTLPT Trigger: AGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAAGCCTGGGGCCCAAGAGGCCGAGAGTCGGGTTCCTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS CCA 72 bp | GCAAGCTGGCCAGGGAACAGGCCTCCTCTTGAAGTGTaGCATCTACCACATGCCGGCAGCCAATCTTGCACA | + |
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Preference number: 6 (lower is better) Translates to: ASWPGNRPPLEV*HLPHAGSQSCT Trigger: TGTGCAAGATTGGCTGCCGGCATGTGGTAGATGCCACACTTCAAGAGGAGGCCTGTTCCCTGGCCAGCTTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 72 bp | TGTGCAGAAGGCTCTGCAAGGACACGTGCAGCACCTTaGCCACTCGCTTGCTGCTCTCCATCATCTCGAAGA | + |
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Preference number: 6 (lower is better) Translates to: CAEGSARTRAAP*PLACCSPSSRR Trigger: TCTTCGAGATGATGGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 72 bp | CTTTCTTCCTTGTGCAGAAGGCTCTGCAAGGACACGTaGAGCACCTTGCCCACTCGCTTGCTGCTCTCCATC | + |
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Preference number: 6 (lower is better) Translates to: LSSLCRRLCKDT*STLPTRLLLSI Trigger: GATGGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS CAA 72 bp | TTGTGCAGAAGGCTCTGCAAGGACACGTGCAGCACCTaGCCCACTCGCTTGCTGCTCTCCATCATCTCGAAG | + |
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Preference number: 6 (lower is better) Translates to: LCRRLCKDTCST*PTRLLLSIISK Trigger: CTTCGAGATGATGGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS CAA 90 bp | CTTTCTTCCTTGTGCAGAAGGCTCTGCAAGGACACGTGCAGCACCTaGCCCACTCGCTTGCTGCTCTCCATCATCTCGAAGATGCTCTCA | + |
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Preference number: 6 (lower is better) Translates to: LSSLCRRLCKDTCST*PTRLLLSIISKMLS Trigger: TGAGAGCATCTTCGAGATGATGGAGAGCAGCAAGCGAGTGGGCAAGGTGCTGCACGTGTCCTTGCAGAGCCTTCTGCACAAGGAAGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS TCA 72 bp | CATCCACATATAGAACCCAGCAGTGCTCTCGAGGACTaGTGCAGAGGGACCTCAGGTCTACGCTGCTCTTGT | + |
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Preference number: 6 (lower is better) Translates to: HPHIEPSSALED*CRGTSGLRCSC Trigger: ACAAGAGCAGCGTAGACCTGAGGTCCCTCTGCATCAGTCCTCGAGAGCACTGCTGGGTTCTATATGTGGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS TCA 72 bp | CCCATTTCTGCTTTCACTCCCACCAAGATGTCTGTGTaGCCCAGCTTGACTCTGGCAGACCCACTGGTGTTA | + |
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Preference number: 6 (lower is better) Translates to: PISAFTPTKMSV*PSLTLADPLVL Trigger: TAACACCAGTGGGTCTGCCAGAGTCAAGCTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000026891.5 ENSMUST00000215377.2 |
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| CDS CAA 90 bp | TCAGTCGGATGCAGTCATAAGGATCGTCAGACAGCTCAATGTCCTTaGCCCCCTCTTCATCCTCCAGAACACGAACCCTTGGTATCCTTG | + |
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Preference number: 6 (lower is better) Translates to: SVGCSHKDRQTAQCP*PPLHPPEHEPLVSL Trigger: CAAGGATACCAAGGGTTCGTGTTCTGGAGGATGAAGAGGGGGCAAAGGACATTGAGCTGTCTGACGATCCTTATGACTGCATCCGACTGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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| CDS GCA 72 bp | TTCATTCGGTTTCTCCAGCTTCGGTGTCCCCATTTCTaGTTTCACTCCCACCAAGATGTCTGTGTGACCCAG | + |
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Preference number: 6 (lower is better) Translates to: FIRFLQLRCPHF*FHSHQDVCVTQ Trigger: CTGGGTCACACAGACATCTTGGTGGGAGTGAAAGCAGAAATGGGGACACCGAAGCTGGAGAAACCGAATGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000026891.5 ENSMUST00000215377.2 |
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| CDS CAA 72 bp | TGCAGTCATAAGGATCGTCAGACAGCTCAATGTCCTTaGCCCCCTCTTCATCCTCCAGAACACGAACCCTTG | + |
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Preference number: 6 (lower is better) Translates to: CSHKDRQTAQCP*PPLHPPEHEPL Trigger: CAAGGGTTCGTGTTCTGGAGGATGAAGAGGGGGCAAAGGACATTGAGCTGTCTGACGATCCTTATGACTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000026891.5 |
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