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Pregenerated sensors for EXOSC6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000109941

Ensembl transcript IDs: ENSMUST00000210390.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTaGGGAGTCAGGCGACCATCAGCGCTTGGTCCTTTAGGGAGAGAA +
Preference number: 1 (lower is better)
Translates to: FGSVRPTAPLFVSQL*GVRRPSALGPLGRE
Trigger: TTCTCTCCCTAAAGGACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 90 bp ACTCTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTaGTCCTTTAGGGAGAGAAGGGCGATAGCAGTCCTCGAATCCTCG +
Preference number: 1 (lower is better)
Translates to: TLRFSALRSQATISA*SFRERRAIAVLESS
Trigger: CGAGGATTCGAGGACTGCTATCGCCCTTCTCTCCCTAAAGGACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 90 bp GGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGCCAATaGCTGGCCTGCACTGGGTCCATCTCCTACAAGACCATAGCCCCT +
Preference number: 1 (lower is better)
Translates to: GPSSQKNQFIMYWSQ*LACTGSISYKTIAP
Trigger: AGGGGCTATGGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 90 bp AAAGAATCAGTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTaGGTCCATCTCCTACAAGACCATAGCCCCTTATCTCATTTACTA +
Preference number: 1 (lower is better)
Translates to: KESVYYVLEPMAGLH*VHLLQDHSPLSHLL
Trigger: TAGTAAATGAGATAAGGGGCTATGGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAACTGATTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR-3UTR GCA 90 bp TTGGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAGACCATAGCCCCTTCGTTTCTCAGCTCTaGGGAGTCAGGCGACCATCA +
Preference number: 2 (lower is better)
Translates to: LEPMAGLHWVHLLQDHSPFVSQL*GVRRPS
Trigger: TGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAA...GGGGCTATGGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR-3UTR GCA 90 bp CAATGGCTGGCCTGCACTGGGTCCATCTCCTACAAGACCATAGCCCCTTATCTCAGTGCTTTGGTTCTGTaGGCCCAACTGCCCCACTCT +
Preference number: 2 (lower is better)
Translates to: QWLACTGSISYKTIAPYLSALVL*AQLPHS
Trigger: AGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACT...GAGATAAGGGGCTATGGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR GCA 72 bp GTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTaGGGAGTCAGGCGACCATCAGCGCTTGGTCCTTTA +
Preference number: 3 (lower is better)
Translates to: VRPTAPLFVSQL*GVRRPSALGPL
Trigger: TAAAGGACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR GCA 72 bp CAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTaGCCCACTCTTCGTTTCTCAGCTCTGCGGAGTCAG +
Preference number: 3 (lower is better)
Translates to: QSCPVLWFCAPN*PTLRFSALRSQ
Trigger: CTGACTCCGCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR GCA 72 bp ACCTTTCCAACAGAGCTGTCCAGTGCTTTGGTTCTGTaGGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCT +
Preference number: 3 (lower is better)
Translates to: TFPTELSSALVL*AQLPHSSFLSS
Trigger: AGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTGGAAAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR GCA 72 bp AATCAGTTTATTATGTATTGGAGCCAATGGCTGGCCTaGACTGGGTCCATCTCCTACAAGACCATAGCCCCT +
Preference number: 3 (lower is better)
Translates to: NQFIMYWSQWLA*TGSISYKTIAP
Trigger: AGGGGCTATGGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAACTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 72 bp GTTTATTATGTATTGGAGCCAATGGCTGGCCTGCACTaGGTCCATCTCCTACAAGACCATAGCCCCTTATCT +
Preference number: 3 (lower is better)
Translates to: VYYVLEPMAGLH*VHLLQDHSPLS
Trigger: AGATAAGGGGCTATGGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 72 bp GGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTaGAGCCAATGGCTGGCCTGCACTGGGTCCATCTCC +
Preference number: 3 (lower is better)
Translates to: GPSSQKNQFIMY*SQWLACTGSIS
Trigger: GGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR GCA 72 bp ATCCAGCCCAAGTCCTTTCCAACTTGGGAGTATGGCTaGTTTCAAATCTCTCCAACTGGATCGTGTTTCCAA +
Preference number: 3 (lower is better)
Translates to: IQPKSFPTWEYG*FQISPTGSCFQ
Trigger: TTGGAAACACGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTTGGGCTGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 72 bp GTAAATCCAGCCCAAGTCCTTTCCAACTTGGGAGTATaGCTGCTTTCAAATCTCTCCAACTGGATCGTGTTT +
Preference number: 3 (lower is better)
Translates to: VNPAQVLSNLGV*LLSNLSNWIVF
Trigger: AAACACGATCCAGTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTTGGGCTGGATTTAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
3UTR CCA 72 bp TCTCAAAAGAATCAGTTTATTATGTATTGGAGCCAATaGCTGGCCTGCACTGGGTCCATCTCCTACAAGACC +
Preference number: 3 (lower is better)
Translates to: SQKNQFIMYWSQ*LACTGSISYKT
Trigger: GGTCTTGTAGGAGATGGACCCAGTGCAGGCCAGCCATTGGCTCCAATACATAATAAACTGATTCTTTTGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR TCA 90 bp TCCAACAGAGCTGTCCAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCTACAGCTGCGGCGGCTaGGACTCCTCCGGCCCGCGG +
Preference number: 4 (lower is better)
Translates to: SNRAVQCFGSVRPTAPLFYSCGG*DSSGPR
Trigger: CCGCGGGCCGGAGGAGTCTCAGCCGCCGCAGCTGTA...GAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTGGACAGCTCTGTTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR CCA 90 bp CTTCGTTTCTCAGCTCTGCGGAGTCAGGCGACCATCAGCGCTTGGTCCTTTAGGCGGCGCACAGCACCTTaGTCCCGCCCGCCTCCAGGT +
Preference number: 4 (lower is better)
Translates to: LRFSALRSQATISAWSFRRRTAP*SRPPPG
Trigger: ACCTGGAGGCGGGCGGGACCAAGGTGCTGTGCGCCG...CCTAAAGGACCAAGCGCTGATGGTCGCCTGACTCCGCAGAGCTGAGAAACGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR TCA 90 bp CAGTGCTTTGGTTCTGTGCGCCCAACTGCCCCACTCTTCGTTTCTCAGCTCTGCAGTAACCCGGCCACCTaGTTGAGCACAGGCATGAGG +
Preference number: 4 (lower is better)
Translates to: QCFGSVRPTAPLFVSQLCSNPAT*LSTGMR
Trigger: CCTCATGCCTGTGCTCAATCAGGTGGCCGGGTTACT...GCAGAGCTGAGAAACGAAGAGTGGGGCAGTTGGGCGCACAGAACCAAAGCACTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR CCA 90 bp ATCCAGCCCAAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCACCTCCTCCAGCCGCGTaGGGTCCAGCAGCCAGGTCG +
Preference number: 4 (lower is better)
Translates to: IQPKSFPTWEYGCFQISPPPPAA*GPAARS
Trigger: CGACCTGGCTGCTGGACCCCACGCGGCTGGAGGAGG...TGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTTGGGCTGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR CCA 90 bp TTACTAGGTAAATCCAGCCCAAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCGGTAGGCGGAGCCCTTaGCCTGGCTCAGCAGCCCGG +
Preference number: 4 (lower is better)
Translates to: LLGKSSPSPFQLGSMAAFGRRSP*PGSAAR
Trigger: CCGGGCTGCTGAGCCAGGCCAAGGGCTCCGCCTACC...GAAAGCAGCCATACTCCCAAGTTGGAAAGGACTTGGGCTGGATTTACCTAGTAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR TCA 90 bp AGGCAAAGTCCCCTGGTCCATCCTCTCAAAAGAATCAGTTTATTATGTATTGGAGGGAGGGTCCCGGGGTaGGGCTCAGGCCGCAGCCCA +
Preference number: 4 (lower is better)
Translates to: RQSPLVHPLKRISLLCIGGRVPG*GSGRSP
Trigger: TGGGCTGCGGCCTGAGCCTCACCCCGGGACCCTCCC...TCCAATACATAATAAACTGATTCTTTTGAGAGGATGGACCAGGGGACTTTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR GCA 90 bp TCGTGTTTCCAACGGCCTTTTAAACCTTTCCAACAGAGCTGTCCAGTGCTTTGGGTCCAACTCTCAGTCTaGCCGCCTTCCCCACTGCCC +
Preference number: 4 (lower is better)
Translates to: SCFQRPFKPFQQSCPVLWVQLSV*PPSPLP
Trigger: GGGCAGTGGGGAAGGCGGGCAGACTGAGAGTTGGAC...CCAAAGCACTGGACAGCTCTGTTGGAAAGGTTTAAAAGGCCGTTGGAAACACGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2
CDS-3UTR CAA 90 bp CCAGCCCAAGTCCTTTCCAACTTGGGAGTATGGCTGCTTTCAAATCTCTCCAACACGGCGCACAGCACCTaGGTCCCGCCCGCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: PAQVLSNLGVWLLSNLSNTAHST*VPPASR
Trigger: CCTGGAGGCGGGCGGGACCAAGGTGCTGTGCGCCGT...GTTGGAGAGATTTGAAAGCAGCCATACTCCCAAGTTGGAAAGGACTTGGGCTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000210390.2