Pregenerated sensors for EXOSC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034321Ensembl transcript IDs: ENSMUST00000075280.12, ENSMUST00000112123.4
Found 76 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCAGGTTGAACCCAGAGCTCACCTCCAGCATGGATAAAGCACACTaGACTTCAAGGTCCTTGCATGTCAGCAAGAGCCACCCCTGCAGT | + |
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Preference number: 1 (lower is better) Translates to: GRLNPELTSSMDKAH*TSRSLHVSKSHPCS Trigger: ACTGCAGGGGTGGCTCTTGCTGACATGCAAGGACCTTGAAGTTCAGTGTGCTTTATCCATGCTGGAGGTGAGCTCTGGGTTCAACCTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CCA 90 bp | TTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTaGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTGG | + |
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Preference number: 1 (lower is better) Translates to: LVERVLICSPGWPQT*ALTISLSQQRQGPW Trigger: CCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR TCA 90 bp | AACTTGCTGAAAGTTAGCAACCAGAGCTCACGGACCCAGGCAGGTTaGACCCAGAGCTCACCTCCAGCATGGATAAAGCACACTGAACTT | + |
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Preference number: 1 (lower is better) Translates to: NLLKVSNQSSRTQAG*TQSSPPAWIKHTEL Trigger: AAGTTCAGTGTGCTTTATCCATGCTGGAGGTGAGCTCTGGGTTCAACCTGCCTGGGTCCGTGAGCTCTGGTTGCTAACTTTCAGCAAGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR GCA 90 bp | AGCTCACCTCCAGCATGGATAAAGCACACTGAACTTCAAGGTCCTTaGATGTCAGCAAGAGCCACCCCTGCAGTGTCTTCATGCTTAGCT | + |
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Preference number: 1 (lower is better) Translates to: SSPPAWIKHTELQGP*MSARATPAVSSCLA Trigger: AGCTAAGCATGAAGACACTGCAGGGGTGGCTCTTGCTGACATGCAAGGACCTTGAAGTTCAGTGTGCTTTATCCATGCTGGAGGTGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CCA 90 bp | ACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTaGGTGTCATTACAGCATGAATACATTTCCGGCACATTGTTTCAA | + |
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Preference number: 1 (lower is better) Translates to: TWALTISLSQQRQGP*VSLQHEYISGTLFQ Trigger: TTGAAACAATGTGCCGGAAATGTATTCATGCTGTAATGACACCCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR GCA 90 bp | TCTGCTAAAGACAACAGAAGACATGTTAGCCATGCTTGTAATCCCTaGATTGGGGAGATGGAGTCAGAAATATCACTGCAAGTTCACCCA | + |
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Preference number: 1 (lower is better) Translates to: SAKDNRRHVSHACNP*IGEMESEISLQVHP Trigger: TGGGTGAACTTGCAGTGATATTTCTGACTCCATCTCCCCAATGCAGGGATTACAAGCATGGCTAACATGTCTTCTGTTGTCTTTAGCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR GCA 90 bp | AGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGTTTCAAGAGATGGTTaGCAGCTGACCGCAGGTACC | + |
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Preference number: 2 (lower is better) Translates to: RLASNLGTNNLPVSAAAGVSRDG*QLTAGT Trigger: GGTACCTGCGGTCAGCTGGCAACCATCTCTTGAAAC...CCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCCAGAGACGCTACACAACGACTCACATAGAGGGAAGCAGGCACACATCAGACCAGTCATGAGCAGCTaGGTGAAAATCTCAAGCATT | + |
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Preference number: 2 (lower is better) Translates to: PPETLHNDSHRGKQAHIRPVMSS*VKISSI Trigger: AATGCTTGAGATTTTCACTCAGCTGCTCATGACTGG...TCTGATGTGTGCCTGCTTCCCTCTATGTGAGTCGTTGTGTAGCGTCTCTGGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR CCA 90 bp | CCTCCAGAGACGCTACACAACGACTCACATAGAGGGAAGCAGGCACACATCAGACATGGGCTGTGGAGATaGCTTAAGGGTAAAGGAAAT | + |
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Preference number: 2 (lower is better) Translates to: PPETLHNDSHRGKQAHIRHGLWR*LKGKGN Trigger: ATTTCCTTTACCCTTAAGCCATCTCCACAGCCCATG...TCTGATGTGTGCCTGCTTCCCTCTATGTGAGTCGTTGTGTAGCGTCTCTGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR TCA 90 bp | CCTCCAGAGACGCTACACAACGACTCACATAGAGGGAAGCAGGCACACATCAGAGGTGTCATTACAGCATaGATACATTTCCGGCACATT | + |
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Preference number: 2 (lower is better) Translates to: PPETLHNDSHRGKQAHIRGVITA*IHFRHI Trigger: AATGTGCCGGAAATGTATTCATGCTGTAATGACACC...TCTGATGTGTGCCTGCTTCCCTCTATGTGAGTCGTTGTGTAGCGTCTCTGGAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CAA 90 bp | GGATCACCTTCACGCTTACCAAATTCCTTCACAATTCTTTTGGTCTaGTCACCAATCCTCAACCATCTCACATGGTGGCATCCTGCCTCT | + |
|
Preference number: 2 (lower is better) Translates to: GSPSRLPNSFTILLV*SPILNHLTWWHPAS Trigger: AGAGGCAGGATGCCACCATGTGAGATGGTTGAGGATTGGTGACAAGACCAAAAGAATTGTGAAGGAATTTGGTAAGCGTGAAGGTGATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR GCA 90 bp | TGCTGTTTGAGTCACCCACAGGCACAACAGTTTTCACTAAACATAATGCATGTTGTTCCGGGGATCCAATaGCATCTTCTGGCCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: CCLSHPQAQQFSLNIMHVVPGIQ*HLLASR Trigger: TCTGGAGGCCAGAAGATGGCATTGGATCCCCGGAAC...AACATGCATTATGTTTAGTGAAAACTGTTGTGCCTGTGGGTGACTCAAACAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CAA 90 bp | GCACTAGGATCACCTTCACGCTTACCAAATTCCTTCACAATTCTTTaGGTCTTGTCACCAATCCTCAACCATCTCACATGGTGGCATCCT | + |
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Preference number: 2 (lower is better) Translates to: ALGSPSRLPNSFTIL*VLSPILNHLTWWHP Trigger: AGGATGCCACCATGTGAGATGGTTGAGGATTGGTGACAAGACCAAAAGAATTGTGAAGGAATTTGGTAAGCGTGAAGGTGATCCTAGTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR TCA 90 bp | AAAGACAACAGAAGACATGTTAGCCATGCTTGTAATCCCTGCATTGGGGAGATGACTTTTAGAAGTAGCTaGAGTGCTGAAGTCCTCTTT | + |
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Preference number: 2 (lower is better) Translates to: KDNRRHVSHACNPCIGEMTFRSS*SAEVLF Trigger: AAAGAGGACTTCAGCACTTCAGCTACTTCTAAAAGT...CATCTCCCCAATGCAGGGATTACAAGCATGGCTAACATGTCTTCTGTTGTCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR CCA 90 bp | TTACCAAATTCCTTCACAATTCTTTTGGTCTTGTCACCAATCCTCAACCATCTCGTGGCTGAGAGTAGTTaGAGCTCACAACTTGTGACT | + |
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Preference number: 2 (lower is better) Translates to: LPNSFTILLVLSPILNHLVAESS*SSQLVT Trigger: AGTCACAAGTTGTGAGCTCCAACTACTCTCAGCCAC...GAGATGGTTGAGGATTGGTGACAAGACCAAAAGAATTGTGAAGGAATTTGGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR TCA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTGGTGTCATTACAGCATaGATACATTTCCGGCACATT | + |
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Preference number: 2 (lower is better) Translates to: FCLLVERVLICSPGWPQTGVITA*IHFRHI Trigger: AATGTGCCGGAAATGTATTCATGCTGTAATGACACC...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR-3UTR TCA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTACTTTTAGAAGTAGCTaGAGTGCTGAAGTCCTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: FCLLVERVLICSPGWPQTTFRSS*SAEVLF Trigger: AAAGAGGACTTCAGCACTTCAGCTACTTCTAAAAGT...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR TCA 72 bp | AAAGTTAGCAACCAGAGCTCACGGACCCAGGCAGGTTaGACCCAGAGCTCACCTCCAGCATGGATAAAGCAC | + |
|
Preference number: 3 (lower is better) Translates to: KVSNQSSRTQAG*TQSSPPAWIKH Trigger: GTGCTTTATCCATGCTGGAGGTGAGCTCTGGGTTCAACCTGCCTGGGTCCGTGAGCTCTGGTTGCTAACTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CCA 72 bp | CTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTaGGTGTCATTACAGCATGAATACATTTCCGGCACA | + |
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Preference number: 3 (lower is better) Translates to: LTISLSQQRQGP*VSLQHEYISGT Trigger: TGTGCCGGAAATGTATTCATGCTGTAATGACACCCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR CCA 72 bp | AGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTaGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAG | + |
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Preference number: 3 (lower is better) Translates to: RVLICSPGWPQT*ALTISLSQQRQ Trigger: CTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR TCA 72 bp | AACCCAGAGCTCACCTCCAGCATGGATAAAGCACACTaGACTTCAAGGTCCTTGCATGTCAGCAAGAGCCAC | + |
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Preference number: 3 (lower is better) Translates to: NPELTSSMDKAH*TSRSLHVSKSH Trigger: GTGGCTCTTGCTGACATGCAAGGACCTTGAAGTTCAGTGTGCTTTATCCATGCTGGAGGTGAGCTCTGGGTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR GCA 72 bp | CCAGCATGGATAAAGCACACTGAACTTCAAGGTCCTTaGATGTCAGCAAGAGCCACCCCTGCAGTGTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: PAWIKHTELQGP*MSARATPAVSS Trigger: TGAAGACACTGCAGGGGTGGCTCTTGCTGACATGCAAGGACCTTGAAGTTCAGTGTGCTTTATCCATGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR TCA 72 bp | TCAGCAGCGGCAGGGGCCTTGGGTGTCATTACAGCATaGATACATTTCCGGCACATTGTTTCAAGAGATGGT | + |
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Preference number: 3 (lower is better) Translates to: SAAAGALGVITA*IHFRHIVSRDG Trigger: ACCATCTCTTGAAACAATGTGCCGGAAATGTATTCATGCTGTAATGACACCCAAGGCCCCTGCCGCTGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR CCA 72 bp | TTGGTCTTGTCACCAATCCTCAACCATCTCACATGGTaGCATCCTGCCTCTCCTGTCAATTCAGAGTCAACA | + |
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Preference number: 3 (lower is better) Translates to: LVLSPILNHLTW*HPASPVNSEST Trigger: TGTTGACTCTGAATTGACAGGAGAGGCAGGATGCCACCATGTGAGATGGTTGAGGATTGGTGACAAGACCAA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CCA 72 bp | CTTTTGGTCTTGTCACCAATCCTCAACCATCTCACATaGTGGCATCCTGCCTCTCCTGTCAATTCAGAGTCA | + |
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Preference number: 3 (lower is better) Translates to: LLVLSPILNHLT*WHPASPVNSES Trigger: TGACTCTGAATTGACAGGAGAGGCAGGATGCCACCATGTGAGATGGTTGAGGATTGGTGACAAGACCAAAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR CAA 90 bp | TCTCCTGTCAATTCAGAGTCAACAGTTCAGGGATGCCTACTCTGTCACAGTAACTACATTTCCGGCACATaGTTTCAAGAGATGGTTGCC | + |
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Preference number: 3 (lower is better) Translates to: SPVNSESTVQGCLLCHSNYISGT*FQEMVA Trigger: GGCAACCATCTCTTGAAACAATGTGCCGGAAATGTA...GTTACTGTGACAGAGTAGGCATCCCTGAACTGTTGACTCTGAATTGACAGGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CCA 72 bp | CACCTTCACGCTTACCAAATTCCTTCACAATTCTTTTaGTCTTGTCACCAATCCTCAACCATCTCACATGGT | + |
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Preference number: 3 (lower is better) Translates to: HLHAYQIPSQFF*SCHQSSTISHG Trigger: ACCATGTGAGATGGTTGAGGATTGGTGACAAGACCAAAAGAATTGTGAAGGAATTTGGTAAGCGTGAAGGTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR-3UTR CAA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTACATTTCCGGCACATaGTTTCAAGAGATGGTTGCC | + |
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Preference number: 3 (lower is better) Translates to: FCLLVERVLICSPGWPQTYISGT*FQEMVA Trigger: GGCAACCATCTCTTGAAACAATGTGCCGGAAATGTA...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| 3UTR GCA 72 bp | TGTCCTTCGACTTTCAAACACATACTGTGTCATACGTaGTGTGGCACAGACTTGTGCACACAATTATACAAT | + |
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Preference number: 3 (lower is better) Translates to: CPSTFKHILCHT*CGTDLCTQLYN Trigger: ATTGTATAATTGTGTGCACAAGTCTGTGCCACAGCACGTATGACACAGTATGTGTTTGAAAGTCGAAGGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | CTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCCCGCGCCATTCTCGCTaGTCTTCATCAGGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: LASNLGTNNLPVSAAAGAPRHSR*SSSGSQ Trigger: CTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCGG...GGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGTGTTTCTCTCATCACTaGCACCACGGGAACCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: RLASNLGTNNLPVSAAAGCFSHH*HHGNRA Trigger: GGCGCGGTTCCCGTGGTGTCAGTGATGAGAGAAACA...CCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | TCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTGGGTTGCCGCTGCCGGGGCTaGCTTCCTCCAAGTTACACA | + |
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Preference number: 4 (lower is better) Translates to: SNLGTNNLPVSAAAGALGCRCRG*LPPSYT Trigger: TGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCA...ACCCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | TCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTGGGTACACCTGACTCACTGTaGGCCACCACAACGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SNLGTNNLPVSAAAGALGTPDSL*ATTTPS Trigger: GCTGGGCGTTGTGGTGGCCCACAGTGAGTCAGGTGT...ACCCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | CTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCGCATCTCACACCAGCTaGTGGGAACCATCTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: LASNLGTNNLPVSAAAGAASHTS*WEPSEH Trigger: GTGTTCAGATGGTTCCCATCAGCTGGTGTGAGATGC...GGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGCTGATGGGAACCATCTaGACACCTGACTCACTGTGG | + |
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Preference number: 4 (lower is better) Translates to: RLASNLGTNNLPVSAAAGLMGTI*TPDSLW Trigger: CCACAGTGAGTCAGGTGTTCAGATGGTTCCCATCAG...CCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | CTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTGGGCAGGGTGTAGGTGCCGCTaGCGGGGCTGCCTTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: LLVERVLICSPGWPQTWAGCRCR*RGCLPP Trigger: TGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCC...TGCCCAAGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | TCTCCTGTCAATTCAGAGTCAACAGTTCAGGGATGCCTACTCTGTCACAGTAACGGGTGTAGGTGCCGCTaGCGGGGCTGCCTTCCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SPVNSESTVQGCLLCHSNGCRCR*RGCLPP Trigger: TGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCC...GTTACTGTGACAGAGTAGGCATCCCTGAACTGTTGACTCTGAATTGACAGGAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | GGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTGGGTGTCATTACACGGAATTCTTTAGTGTaGGTCTTGGGGCACTGCATC | + |
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Preference number: 4 (lower is better) Translates to: GTNNLPVSAAAGALGVITRNSLV*VLGHCI Trigger: GATGCAGTGCCCCAAGACCCACACTAAAGAATTCCG...TGTAATGACACCCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | AGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGTACTTTGGCAAACCGTaGGTTGATGCTAGAGACCTT | + |
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Preference number: 4 (lower is better) Translates to: RLASNLGTNNLPVSAAAGYFGKP*VDARDL Trigger: AAGGTCTCTAGCATCAACTCACGGTTTGCCAAAGTA...CCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS-3UTR CCA 90 bp | AGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGACATCTGGAAGCAACTaGGACTCTGTTTCTCTCATC | + |
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Preference number: 4 (lower is better) Translates to: RLASNLGTNNLPVSAAAGTSGSN*DSVSLI Trigger: GATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGT...CCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTCATGCCGGGTGTAGGTaGCGCTGCCGGGGCTGCCTT | + |
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Preference number: 4 (lower is better) Translates to: FCLLVERVLICSPGWPQTHAGCR*RCRGCL Trigger: AAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATG...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | AGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGAAAAGCATTTTTGAGTaGTGTGGATCCCACATACAG | + |
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Preference number: 4 (lower is better) Translates to: RLASNLGTNNLPVSAAAGKSIFE*CGSHIQ Trigger: CTGTATGTGGGATCCACACCACTCAAAAATGCTTTT...CCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS-3UTR CCA 90 bp | AAAGACAACAGAAGACATGTTAGCCATGCTTGTAATCCCTGCATTGGGGAGATGACACCTGACTCACTGTaGGCCACCACAACGCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: KDNRRHVSHACNPCIGEMTPDSL*ATTTPS Trigger: GCTGGGCGTTGTGGTGGCCCACAGTGAGTCAGGTGT...CATCTCCCCAATGCAGGGATTACAAGCATGGCTAACATGTCTTCTGTTGTCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | GATCTCCACGCACTAGGATCACCTTCACGCTTACCAAATTCCTTCACAATTCTTTGTTTCTCTCATCACTaGCACCACGGGAACCGCGCC | + |
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Preference number: 4 (lower is better) Translates to: DLHALGSPSRLPNSFTILCFSHH*HHGNRA Trigger: GGCGCGGTTCCCGTGGTGTCAGTGATGAGAGAAACA...AAGAATTGTGAAGGAATTTGGTAAGCGTGAAGGTGATCCTAGTGCGTGGAGATC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | TCAAACTTGGGCACTAACAATCTCCCTGTCTCAGCAGCGGCAGGGGCCTTGGGTCTTGTCTTTTTCAGTTaGTCGGATATCTTCTTTGCG | + |
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Preference number: 4 (lower is better) Translates to: SNLGTNNLPVSAAAGALGLVFFS*SDIFFA Trigger: CGCAAAGAAGATATCCGAGCAACTGAAAAAGACAAG...ACCCAAGGCCCCTGCCGCTGCTGAGACAGGGAGATTGTTAGTGCCCAAGTTTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS-3UTR GCA 90 bp | CTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTGGGCATGGGTCTTGGGGCACTaGATCTCACACCAGCTGATG | + |
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Preference number: 4 (lower is better) Translates to: LLVERVLICSPGWPQTWAWVLGH*ISHQLM Trigger: CATCAGCTGGTGTGAGATGCAGTGCCCCAAGACCCA...TGCCCAAGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | TCTCCTGTCAATTCAGAGTCAACAGTTCAGGGATGCCTACTCTGTCACAGTAACTGGGTCTTGGGGCACTaGATCTCACACCAGCTGATG | + |
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Preference number: 4 (lower is better) Translates to: SPVNSESTVQGCLLCHSNWVLGH*ISHQLM Trigger: CATCAGCTGGTGTGAGATGCAGTGCCCCAAGACCCA...GTTACTGTGACAGAGTAGGCATCCCTGAACTGTTGACTCTGAATTGACAGGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR GCA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTGCCGCTGCCGGGGCTaGCTTCCTCCAAGTTACACA | + |
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Preference number: 4 (lower is better) Translates to: FCLLVERVLICSPGWPQTCRCRG*LPPSYT Trigger: TGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCA...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | TGCTGTTTGAGTCACCCACAGGCACAACAGTTTTCACTAAACATAATGCATGTTCCGCGCCATTCTCGCTaGTCTTCATCAGGCAGCCAG | + |
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Preference number: 4 (lower is better) Translates to: CCLSHPQAQQFSLNIMHVPRHSR*SSSGSQ Trigger: CTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCGG...AACATGCATTATGTTTAGTGAAAACTGTTGTGCCTGTGGGTGACTCAAACAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | AGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTGGGCACTAACAATCTCCCGGAATTCTTTAGTGTaGGTCTTGGGGCACTGCATC | + |
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Preference number: 4 (lower is better) Translates to: RVLICSPGWPQTWALTISRNSLV*VLGHCI Trigger: GATGCAGTGCCCCAAGACCCACACTAAAGAATTCCG...GGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | GATCTCCACGCACTAGGATCACCTTCACGCTTACCAAATTCCTTCACAATTCTTGCATCTCACACCAGCTaGTGGGAACCATCTGAACAC | + |
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Preference number: 4 (lower is better) Translates to: DLHALGSPSRLPNSFTILASHTS*WEPSEH Trigger: GTGTTCAGATGGTTCCCATCAGCTGGTGTGAGATGC...AAGAATTGTGAAGGAATTTGGTAAGCGTGAAGGTGATCCTAGTGCGTGGAGATC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTCTGATGGGAACCATCTaGACACCTGACTCACTGTGG | + |
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Preference number: 4 (lower is better) Translates to: FCLLVERVLICSPGWPQTLMGTI*TPDSLW Trigger: CCACAGTGAGTCAGGTGTTCAGATGGTTCCCATCAG...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR CCA 90 bp | TCTCCTGTCAATTCAGAGTCAACAGTTCAGGGATGCCTACTCTGTCACAGTAACACATCTGGAAGCAACTaGGACTCTGTTTCTCTCATC | + |
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Preference number: 4 (lower is better) Translates to: SPVNSESTVQGCLLCHSNTSGSN*DSVSLI Trigger: GATGAGAGAAACAGAGTCCCAGTTGCTTCCAGATGT...GTTACTGTGACAGAGTAGGCATCCCTGAACTGTTGACTCTGAATTGACAGGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS-3UTR TCA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTTTCTACCTTACAGGTaGCGACAGCTCCCACATCTG | + |
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Preference number: 4 (lower is better) Translates to: FCLLVERVLICSPGWPQTFLPYR*RQLPHL Trigger: CAGATGTGGGAGCTGTCGTCACCTGTAAGGTAGAAA...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CAA 72 bp | TCACGCTTACCAAATTCCTTCACAATTCTTTTGGTCTaGTCACCAATCCTCAACCATCTCACATGGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: SRLPNSFTILLV*SPILNHLTWWH Trigger: ATGCCACCATGTGAGATGGTTGAGGATTGGTGACAAGACCAAAAGAATTGTGAAGGAATTTGGTAAGCGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CAA 72 bp | TCACCTTCACGCTTACCAAATTCCTTCACAATTCTTTaGGTCTTGTCACCAATCCTCAACCATCTCACATGG | + |
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Preference number: 4 (lower is better) Translates to: SPSRLPNSFTIL*VLSPILNHLTW Trigger: CCATGTGAGATGGTTGAGGATTGGTGACAAGACCAAAAGAATTGTGAAGGAATTTGGTAAGCGTGAAGGTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| 3UTR CAA 72 bp | AAACACATACTGTGTCATACGTGCTGTGGCACAGACTaGTGCACACAATTATACAATTTTAATTACACAACA | + |
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Preference number: 4 (lower is better) Translates to: KHILCHTCCGTD*CTQLYNFNYTT Trigger: TGTTGTGTAATTAAAATTGTATAATTGTGTGCACAAGTCTGTGCCACAGCACGTATGACACAGTATGTGTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS GCA 90 bp | GGCAGCCAGCCAGCGACGAAAAGATGTAGCCATGCCGGGTGTAGGTaGCGCTGCCGGGGCTGCCTTCCTCCAAGTTACACAGACGTTCGC | + |
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Preference number: 5 (lower is better) Translates to: GSQPATKRCSHAGCR*RCRGCLPPSYTDVR Trigger: GCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGTCGCTGGCTGGCTGCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS CCA 90 bp | CTGTTTCTCTCATCACTGACACCACGGGAACCGCGCCATTCTCGCTaGTCTTCATCAGGCAGCCAGCCAGCGACGAAAAGATGTAGCCAT | + |
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Preference number: 5 (lower is better) Translates to: LFLSSLTPREPRHSR*SSSGSQPATKRCSH Trigger: ATGGCTACATCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCGGTTCCCGTGGTGTCAGTGATGAGAGAAACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS CCA 90 bp | AGGAACTCGGGCTGTACTCGGGCCACTTTTCGGAATTCTTTAGTGTaGGTCTTGGGGCACTGCATCTCACACCAGCTGATGGGAACCATC | + |
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Preference number: 5 (lower is better) Translates to: RNSGCTRATFRNSLV*VLGHCISHQLMGTI Trigger: GATGGTTCCCATCAGCTGGTGTGAGATGCAGTGCCCCAAGACCCACACTAAAGAATTCCGAAAAGTGGCCCGAGTACAGCCCGAGTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS-3UTR CAA 90 bp | AGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTGGGCACTAACAATCTCCGCTCGGATATCTTCTTaGCGGATAGTTCCTCGAAAA | + |
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Preference number: 5 (lower is better) Translates to: RVLICSPGWPQTWALTISARISS*RIVPRK Trigger: TTTTCGAGGAACTATCCGCAAAGAAGATATCCGAGC...GGAGATTGTTAGTGCCCAAGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS-3UTR CAA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTTGGCAAACCGTGAGTaGATGCTAGAGACCTTACAG | + |
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Preference number: 5 (lower is better) Translates to: FCLLVERVLICSPGWPQTLANRE*MLETLQ Trigger: CTGTAAGGTCTCTAGCATCAACTCACGGTTTGCCAA...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS-3UTR CAA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTCCTCGAAAAGCATTTTaGAGTGGTGTGGATCCCACA | + |
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Preference number: 5 (lower is better) Translates to: FCLLVERVLICSPGWPQTPRKAF*SGVDPT Trigger: TGTGGGATCCACACCACTCAAAAATGCTTTTCGAGG...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS-3UTR CAA 90 bp | TTTTGTCTTTTGGTTGAAAGAGTCTTAATATGTAGCCCAGGCTGGCCTCAAACTTACAGGATGTGTACTTaGGCAAACCGTGAGTTGATG | + |
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Preference number: 5 (lower is better) Translates to: FCLLVERVLICSPGWPQTYRMCT*ANRELM Trigger: CATCAACTCACGGTTTGCCAAAGTACACATCCTGTA...AGTTTGAGGCCAGCCTGGGCTACATATTAAGACTCTTTCAACCAAAAGACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS GCA 72 bp | TGTAGCCATGCCGGGTGTAGGTGCCGCTGCCGGGGCTaGCTTCCTCCAAGTTACACAGACGTTCGCCGGGGA | + |
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Preference number: 6 (lower is better) Translates to: CSHAGCRCRCRG*LPPSYTDVRRG Trigger: TCCCCGGCGAACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS GCA 72 bp | ACGAAAAGATGTAGCCATGCCGGGTGTAGGTGCCGCTaGCGGGGCTGCCTTCCTCCAAGTTACACAGACGTT | + |
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Preference number: 6 (lower is better) Translates to: TKRCSHAGCRCR*RGCLPPSYTDV Trigger: AACGTCTGTGTAACTTGGAGGAAGGCAGCCCCGGCAGCGGCACCTACACCCGGCATGGCTACATCTTTTCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS CCA 72 bp | TCATCACTGACACCACGGGAACCGCGCCATTCTCGCTaGTCTTCATCAGGCAGCCAGCCAGCGACGAAAAGA | + |
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Preference number: 6 (lower is better) Translates to: SSLTPREPRHSR*SSSGSQPATKR Trigger: TCTTTTCGTCGCTGGCTGGCTGCCTGATGAAGACCAGCGAGAATGGCGCGGTTCCCGTGGTGTCAGTGATGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS CCA 72 bp | GGCTGTACTCGGGCCACTTTTCGGAATTCTTTAGTGTaGGTCTTGGGGCACTGCATCTCACACCAGCTGATG | + |
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Preference number: 6 (lower is better) Translates to: GCTRATFRNSLV*VLGHCISHQLM Trigger: CATCAGCTGGTGTGAGATGCAGTGCCCCAAGACCCACACTAAAGAATTCCGAAAAGTGGCCCGAGTACAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000075280.12 ENSMUST00000112123.4 |
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| CDS CAA 72 bp | CCCACATACAGGATGTGTACTTTGGCAAACCGTGAGTaGATGCTAGAGACCTTACAGGTGACGACAGCTCCC | + |
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Preference number: 6 (lower is better) Translates to: PTYRMCTLANRE*MLETLQVTTAP Trigger: GGGAGCTGTCGTCACCTGTAAGGTCTCTAGCATCAACTCACGGTTTGCCAAAGTACACATCCTGTATGTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS TCA 72 bp | GGATCCCACATACAGGATGTGTACTTTGGCAAACCGTaGGTTGATGCTAGAGACCTTACAGGTGACGACAGC | + |
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Preference number: 6 (lower is better) Translates to: GSHIQDVYFGKP*VDARDLTGDDS Trigger: GCTGTCGTCACCTGTAAGGTCTCTAGCATCAACTCACGGTTTGCCAAAGTACACATCCTGTATGTGGGATCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS TCA 72 bp | CTGGCCGAAAACTCTTGTAAATTTCTACCTTACAGGTaGCGACAGCTCCCACATCTGGAAGCAACTGGGACT | + |
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Preference number: 6 (lower is better) Translates to: LAENSCKFLPYR*RQLPHLEATGT Trigger: AGTCCCAGTTGCTTCCAGATGTGGGAGCTGTCGTCACCTGTAAGGTAGAAATTTACAAGAGTTTTCGGCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000112123.4 |
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| CDS CAA 72 bp | TTGAGTGGTGTGGATCCCACATACAGGATGTGTACTTaGGCAAACCGTGAGTTGATGCTAGAGACCTTACAG | + |
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Preference number: 6 (lower is better) Translates to: LSGVDPTYRMCT*ANRELMLETLQ Trigger: CTGTAAGGTCTCTAGCATCAACTCACGGTTTGCCAAAGTACACATCCTGTATGTGGGATCCACACCACTCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS CAA 90 bp | AAAGCATTTTTGAGTGGTGTGGATCCCACATACAGGATGTGTACTTaGGCAAACCGTGAGTTGATGCTAGAGACCTTACAGGTGACGACA | + |
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Preference number: 6 (lower is better) Translates to: KAFLSGVDPTYRMCT*ANRELMLETLQVTT Trigger: TGTCGTCACCTGTAAGGTCTCTAGCATCAACTCACGGTTTGCCAAAGTACACATCCTGTATGTGGGATCCACACCACTCAAAAATGCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS CAA 90 bp | GTTGCTCGGATATCTTCTTTGCGGATAGTTCCTCGAAAAGCATTTTaGAGTGGTGTGGATCCCACATACAGGATGTGTACTTTGGCAAAC | + |
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Preference number: 6 (lower is better) Translates to: VARISSLRIVPRKAF*SGVDPTYRMCTLAN Trigger: GTTTGCCAAAGTACACATCCTGTATGTGGGATCCACACCACTCAAAAATGCTTTTCGAGGAACTATCCGCAAAGAAGATATCCGAGCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS CCA 72 bp | TTCTTTGCGGATAGTTCCTCGAAAAGCATTTTTGAGTaGTGTGGATCCCACATACAGGATGTGTACTTTGGC | + |
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Preference number: 6 (lower is better) Translates to: FFADSSSKSIFE*CGSHIQDVYFG Trigger: GCCAAAGTACACATCCTGTATGTGGGATCCACACCACTCAAAAATGCTTTTCGAGGAACTATCCGCAAAGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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| CDS CAA 72 bp | ATATCTTCTTTGCGGATAGTTCCTCGAAAAGCATTTTaGAGTGGTGTGGATCCCACATACAGGATGTGTACT | + |
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Preference number: 6 (lower is better) Translates to: ISSLRIVPRKAF*SGVDPTYRMCT Trigger: AGTACACATCCTGTATGTGGGATCCACACCACTCAAAAATGCTTTTCGAGGAACTATCCGCAAAGAAGATAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000075280.12 |
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