RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EXOC7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020792

Ensembl transcript IDs: ENSMUST00000021147.14, ENSMUST00000106411.10, ENSMUST00000106413.10, ENSMUST00000124281.2, ENSMUST00000126731.8

Found 305 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGGGCCGCTGACCACACCTTCCCTCTCATGGGTGTGGCTCATGTCTaGCCCAGCCCCTGGCAGGGTGTGTGTGCATGGTGGACAGCCTGG +
Preference number: 1 (lower is better)
Translates to: GAADHTFPLMGVAHV*PSPWQGVCAWWTAW
Trigger: CCAGGCTGTCCACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGAGAGGGAAGGTGTGGTCAGCGGCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp CCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAAGCTaGGGACCAGGAAACAGGTGGCTGAGCGGCTGTCCCCAGAGGGTG +
Preference number: 1 (lower is better)
Translates to: PLNHWCMAQAGEYRS*GPGNRWLSGCPQRV
Trigger: CACCCTCTGGGGACAGCCGCTCAGCCACCTGTTTCCTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp CAGCAGCTCCTGGAGGAGGGGCCGCTGACCACACCTTCCCTCTCATaGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTG +
Preference number: 1 (lower is better)
Translates to: QQLLEEGPLTTPSLS*VWLMSDPAPGRVCV
Trigger: CACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGAGAGGGAAGGTGTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp CTCCTGGAGGAGGGGCCGCTGACCACACCTTCCCTCTCATGGGTGTaGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGT +
Preference number: 1 (lower is better)
Translates to: LLEEGPLTTPSLSWV*LMSDPAPGRVCVHG
Trigger: ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGAGAGGGAAGGTGTGGTCAGCGGCCCCTCCTCCAGGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 90 bp GTTCCCCGTCCCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTaGATGGCCCAGGCCGGCGAGTACAGAAGCTGGGGACCAGGAAAC +
Preference number: 1 (lower is better)
Translates to: VPRPSHSQPKPLNHW*MAQAGEYRSWGPGN
Trigger: GTTTCCTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGGGACGGGGAAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp GGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCCTGGTTTaGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGC +
Preference number: 1 (lower is better)
Translates to: GRRRHQDYLGVGLLV*AHRSLFRRTSHSPG
Trigger: GCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp ATGGCCCAGGCCGGCGAGTACAGAAGCTGGGGACCAGGAAACAGGTaGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAA +
Preference number: 1 (lower is better)
Translates to: MAQAGEYRSWGPGNR*LSGCPQRVAQNSSK
Trigger: TTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCTGTTTCCTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp CCCGTCCCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATaGCCCAGGCCGGCGAGTACAGAAGCTGGGGACCAGGAAACAGGT +
Preference number: 1 (lower is better)
Translates to: PVPHTLSLSHSTTGA*PRPASTEAGDQETG
Trigger: ACCTGTTTCCTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGGGACGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp CTAGTTCCCCGTCCCTCACACTCTCAGCCTAAGCCACTCAACCACTaGTGCATGGCCCAGGCCGGCGAGTACAGAAGCTGGGGACCAGGA +
Preference number: 1 (lower is better)
Translates to: LVPRPSHSQPKPLNH*CMAQAGEYRSWGPG
Trigger: TCCTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGGGACGGGGAACTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR TCA 90 bp TGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCCCTCTCCCTaGCAGCAGCTCCTGGAGGAGGGGCCGCTGACCACACCTTCCCTC +
Preference number: 1 (lower is better)
Translates to: CLEEHSGAAKNSPSP*QQLLEEGPLTTPSL
Trigger: GAGGGAAGGTGTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 90 bp CATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTaGATGGTGGACAGCCTGGTCTGTAACAGAGTGGGCCTAGGGATA +
Preference number: 1 (lower is better)
Translates to: HGCGSCLTQPLAGCV*MVDSLVCNRVGLGI
Trigger: TATCCCTAGGCCCACTCTGTTACAGACCAGGCTGTCCACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp TGTGCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTaGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAA +
Preference number: 1 (lower is better)
Translates to: CADEGCREGADTRTI*GWGSWFGHTGLCSE
Trigger: TTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGCACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 90 bp TTTCTGAAGCGCCTAGCTCCACAGGAACCAGAGACAGAGCAGTCCTaGCTCCTGACAGCTAGCGGACCCCCAGGTGTCAGAGCATTCCAG +
Preference number: 1 (lower is better)
Translates to: FLKRLAPQEPETEQS*LLTASGPPGVRAFQ
Trigger: CTGGAATGCTCTGACACCTGGGGGTCCGCTAGCTGTCAGGAGGCAGGACTGCTCTGTCTCTGGTTCCTGTGGAGCTAGGCGCTTCAGAAA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp CATTCCAGAGCTCAGCATCCGGACAATGCCCTTCCTAAGAGAGTGTaGCCTGGCGGCCTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCC +
Preference number: 1 (lower is better)
Translates to: HSRAQHPDNALPKRV*PGGLSFRSVGCDVA
Trigger: GGCCACATCACAGCCAACAGACCTAAAGGAAAGGCCGCCAGGCCACACTCTCTTAGGAAGGGCATTGTCCGGATGCTGAGCTCTGGAATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 90 bp TTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTaGCATCCTATTCTTGGTATCCACATGGCTGCTGGCCAGATGCAC +
Preference number: 1 (lower is better)
Translates to: FTSMGEGMKADQGEA*HPILGIHMAAGQMH
Trigger: GTGCATCTGGCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 90 bp AAAGGAGGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTaGAAGAACATTCTGGAGCAGCCAAGAACAGCCCCTCTCCCTGAC +
Preference number: 1 (lower is better)
Translates to: KGGSGARISAFDHSV*KNILEQPRTAPLPD
Trigger: GTCAGGGAGAGGGGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCCTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACACGCTGGTGTGCAGATaGAGGCTGCAGGGAAGGCGC +
Preference number: 2 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHTLVCR*RLQGRR
Trigger: GCGCCTTCCCTGCAGCCTTCATCTGCACACCAGCGT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR GCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGCCACTCAACCACTGGTaGATGGCCCAGGCCGGCGAG +
Preference number: 2 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPPLNHW*MAQAGE
Trigger: CTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGG...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGGCATGCCGGCAGAACTaGGCAGAAACACTGGCAGAC +
Preference number: 2 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVACRQN*AETLAD
Trigger: GTCTGCCAGTGTTTCTGCCCAGTTCTGCCGGCATGC...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGTATCCACATGGCTGCTaGCCAGATGCACTCCATCAT +
Preference number: 2 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPAYPHGC*PDALHH
Trigger: ATGATGGAGTGCATCTGGCCAGCAGCCATGTGGATA...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAGAAAGCAGACCAGGGTaGAGCCTGCCATCCTATTCT +
Preference number: 2 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRESRPG*SLPSYS
Trigger: AGAATAGGATGGCAGGCTTCACCCTGGTCTGCTTTC...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCGCATGCCGGCAGAACTaGGCAGAAACACTGGCAGAC +
Preference number: 2 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPACRQN*AETLAD
Trigger: GTCTGCCAGTGTTTCTGCCCAGTTCTGCCGGCATGC...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp GTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCAGCATGCCGGCAGAACTaGGCAGAAACACTGGCAGAC +
Preference number: 2 (lower is better)
Translates to: VGLLVWAHRSLFRRTSHSACRQN*AETLAD
Trigger: GTCTGCCAGTGTTTCTGCCCAGTTCTGCCGGCATGC...TGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCACGCTGGTGTGCAGATaGAGGCTGCAGGGAAGGCGC +
Preference number: 2 (lower is better)
Translates to: SAFDHSVWKNILEQPRTATLVCR*RLQGRR
Trigger: GCGCCTTCCCTGCAGCCTTCATCTGCACACCAGCGT...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTCTGCCATCCTATTCTTaGTATCCACATGGCTGCTGG +
Preference number: 2 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGLPSYS*YPHGCW
Trigger: CCAGCAGCCATGTGGATACCAAGAATAGGATGGCAG...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCGTGGGGCTCCTGGTTTaGGCACACAGGTCTCTGTTC +
Preference number: 2 (lower is better)
Translates to: LSPFTSMGEGMKADQGEAVGLLV*AHRSLF
Trigger: GAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAACAGGACCTACACTCTaGGTGACGCTGGTGTGCAGA +
Preference number: 2 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLTGPTL*VTLVCR
Trigger: TCTGCACACCAGCGTCACCCAGAGTGTAGGTCCTGT...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAGAAAGCAGACCAGGGTaGAGCCTGCCATCCTATTCT +
Preference number: 2 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLESRPG*SLPSYS
Trigger: AGAATAGGATGGCAGGCTTCACCCTGGTCTGCTTTC...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGGAAAGCAGACCAGGGTaGAGCCTGCCATCCTATTCT +
Preference number: 2 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPESRPG*SLPSYS
Trigger: AGAATAGGATGGCAGGCTTCACCCTGGTCTGCTTTC...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTGGCCTATTTCTCTTTaGGCCCATTCACATCCATGG +
Preference number: 2 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPWPISL*AHSHPW
Trigger: CCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCA...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR GCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCCAACCATCTCCCAAGTaGATGGTAAGGGCTGCCCTT +
Preference number: 2 (lower is better)
Translates to: SAFDHSVWKNILEQPRTAQPSPK*MVRAAL
Trigger: AAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTG...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGGGCGAGTACAGAAGCTaGGGACCAGGAAACAGGTGG +
Preference number: 2 (lower is better)
Translates to: GARISAFDHSVWKNILEQGEYRS*GPGNRW
Trigger: CCACCTGTTTCCTGGTCCCCAGCTTCTGTACTCGCC...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCATGGGTGAAGGGATaGAAGCAGACCAGGGTGAAG +
Preference number: 2 (lower is better)
Translates to: GARISAFDHSVWKNILEQPWVKG*KQTRVK
Trigger: CTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGG...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR GCA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGGTGCATGGTAAGGGCTaGCCTTGGAACACAGCCGTT +
Preference number: 2 (lower is better)
Translates to: GARISAFDHSVWKNILEQVHGKG*PWNTAV
Trigger: AACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCAC...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGCAGGGTGTGTGTGCATaGTGGACAGCCTGGTCTGTA +
Preference number: 2 (lower is better)
Translates to: GSGARISAFDHSVWKNILQGVCA*WTAWSV
Trigger: TACAGACCAGGCTGTCCACCATGCACACACACCCTG...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CAA 90 bp GGCCTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTaGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAG +
Preference number: 2 (lower is better)
Translates to: GLSFRSVGCDVAYFS*SPFTSMGEGMKADQ
Trigger: CTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAGGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCCCATGGGTGAAGGGATaGAAGCAGACCAGGGTGAAG +
Preference number: 2 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFPWVKG*KQTRVK
Trigger: CTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGG...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR TCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGTGGCCTATTTCTCTTTaGGCCCATTCACATCCATGG +
Preference number: 2 (lower is better)
Translates to: GSGARISAFDHSVWKNILWPISL*AHSHPW
Trigger: CCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCA...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp CACTGGTGCATGGCCCAGGCCGGCGAGTACAGAAGCTaGGGACCAGGAAACAGGTGGCTGAGCGGCTGTCCC +
Preference number: 3 (lower is better)
Translates to: HWCMAQAGEYRS*GPGNRWLSGCP
Trigger: GGGACAGCCGCTCAGCCACCTGTTTCCTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp CTGGAGGAGGGGCCGCTGACCACACCTTCCCTCTCATaGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGG +
Preference number: 3 (lower is better)
Translates to: LEEGPLTTPSLS*VWLMSDPAPGR
Trigger: CCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGAGAGGGAAGGTGTGGTCAGCGGCCCCTCCTCCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp GAGGGGCCGCTGACCACACCTTCCCTCTCATGGGTGTaGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGT +
Preference number: 3 (lower is better)
Translates to: EGPLTTPSLSWV*LMSDPAPGRVC
Trigger: ACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGAGAGGGAAGGTGTGGTCAGCGGCCCCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR TCA 72 bp CCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTaGCCACACCTTCCCTCTCATGGGTGTGGCTCATGT +
Preference number: 3 (lower is better)
Translates to: PLPDSSSWRRGR*PHLPSHGCGSC
Trigger: ACATGAGCCACACCCATGAGAGGGAAGGTGTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CAA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGGGTGGGGCTCCTGGTTaGGGCACACAGGTCTCTGTT +
Preference number: 3 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPAGGAPG*GTQVSV
Trigger: AACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACC...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR TCA 72 bp GAACATTCTGGAGCAGCCAAGAACAGCCCCTCTCCCTaGCAGCAGCTCCTGGAGGAGGGGCCGCTGACCACA +
Preference number: 3 (lower is better)
Translates to: EHSGAAKNSPSP*QQLLEEGPLTT
Trigger: TGTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTGGCTGCTCCAGAATGTTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 72 bp CCCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTaGATGGCCCAGGCCGGCGAGTACAGAAGCTGGGGA +
Preference number: 3 (lower is better)
Translates to: PSHSQPKPLNHW*MAQAGEYRSWG
Trigger: TCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 72 bp GGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTaGATGGTGGACAGCCTGGTCTGTAACAGAGTGGGC +
Preference number: 3 (lower is better)
Translates to: GSCLTQPLAGCV*MVDSLVCNRVG
Trigger: GCCCACTCTGTTACAGACCAGGCTGTCCACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp TGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTaGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCC +
Preference number: 3 (lower is better)
Translates to: CREGADTRTIWG*GSWFGHTGLCS
Trigger: GGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp CACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATaGCCCAGGCCGGCGAGTACAGAAGCTGGGGACCAG +
Preference number: 3 (lower is better)
Translates to: HTLSLSHSTTGA*PRPASTEAGDQ
Trigger: CTGGTCCCCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp CGTCCCTCACACTCTCAGCCTAAGCCACTCAACCACTaGTGCATGGCCCAGGCCGGCGAGTACAGAAGCTGG +
Preference number: 3 (lower is better)
Translates to: RPSHSQPKPLNH*CMAQAGEYRSW
Trigger: CCAGCTTCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGGGACG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR TCA 72 bp CTCCACAGGAACCAGAGACAGAGCAGTCCTGCCTCCTaGCAGCTAGCGGACCCCCAGGTGTCAGAGCATTCC +
Preference number: 3 (lower is better)
Translates to: LHRNQRQSSPAS*QLADPQVSEHS
Trigger: GGAATGCTCTGACACCTGGGGGTCCGCTAGCTGTCAGGAGGCAGGACTGCTCTGTCTCTGGTTCCTGTGGAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CAA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCGGTGGGGCTCCTGGTTaGGGCACACAGGTCTCTGTT +
Preference number: 3 (lower is better)
Translates to: ADQGEACHPILGIHMAAGGGAPG*GTQVSV
Trigger: AACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACC...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CAA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCACCTGCCATCCTATTCTaGGTATCCACATGGCTGCTG +
Preference number: 3 (lower is better)
Translates to: KCMVRAALGTQPFPAVLAPAILF*VSTWLL
Trigger: CAGCAGCCATGTGGATACCAAGAATAGGATGGCAGG...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR TCA 72 bp ACAGGACCTACACTCTGGGTGACGCTGGTGTGCAGATaGAGGCTGCAGGGAAGGCGCAGACACCAGGACTAT +
Preference number: 3 (lower is better)
Translates to: TGPTLWVTLVCR*RLQGRRRHQDY
Trigger: ATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGCACACCAGCGTCACCCAGAGTGTAGGTCCTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp AGACACCAGGACTATCTGGGGGTGGGGCTCCTGGTTTaGGCACACAGGTCTCTGTTCCGAAGGACTTCACAC +
Preference number: 3 (lower is better)
Translates to: RHQDYLGVGLLV*AHRSLFRRTSH
Trigger: GTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCCAGATAGTCCTGGTGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp GCTCAGCATCCGGACAATGCCCTTCCTAAGAGAGTGTaGCCTGGCGGCCTTTCCTTTAGGTCTGTTGGCTGT +
Preference number: 3 (lower is better)
Translates to: AQHPDNALPKRV*PGGLSFRSVGC
Trigger: ACAGCCAACAGACCTAAAGGAAAGGCCGCCAGGCCACACTCTCTTAGGAAGGGCATTGTCCGGATGCTGAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp AGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTaGCCAGATGCACTCCATCATGGAGACCCAAGGCGT +
Preference number: 3 (lower is better)
Translates to: SLPSYSWYPHGC*PDALHHGDPRR
Trigger: ACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR-3UTR CAA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTACCTGCCATCCTATTCTaGGTATCCACATGGCTGCTG +
Preference number: 3 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLPAILF*VSTWLL
Trigger: CAGCAGCCATGTGGATACCAAGAATAGGATGGCAGG...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR GCA 72 bp ATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTaGCATCCTATTCTTGGTATCCACATGGCTGCTGGC +
Preference number: 3 (lower is better)
Translates to: MGEGMKADQGEA*HPILGIHMAAG
Trigger: GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CCA 72 bp TCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTaGAAGAACATTCTGGAGCAGCCAAGAACAGCCCCT +
Preference number: 3 (lower is better)
Translates to: SGARISAFDHSV*KNILEQPRTAP
Trigger: AGGGGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACCGGGCTTGGTCTGCTTaGGGTGCCGCAGGATGGGGA +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHRAWSA*GAAGWG
Trigger: TCCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCG...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCGCTCCTTCAGACCCTTaGTGGAGCGGTCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: ADEGCREGADTRTIWGWGAPSDP*WSGPAG
Trigger: GCCAGCTGGACCGCTCCATCAAGGGTCTGAAGGAGC...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCCTTCGTCCCTGGCCGCTTaGTGGGCTTCTTGGTGGGCG +
Preference number: 4 (lower is better)
Translates to: MKAAGKAQTPGLSGGGAPSSLAA*WASWWA
Trigger: CGCCCACCAAGAAGCCCATCAAGCGGCCAGGGACGA...AGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACAGGACCACGTCCTCCTaGACCTCCAGCTCGTCGTCA +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHRTTSS*TSSSSS
Trigger: TGACGACGAGCTGGAGGTGCAGGAGGACGTGGTCCT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTGGTGCTGGCTGCTGTaGCCTGGAGCACCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: ADEGCREGADTRTIWGWGWCWLL*PGAPGQ
Trigger: TTGACCAGGTGCTCCAGGGCACAGCAGCCAGCACCA...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCGTGCCCTGGAGCACCTaGTCAAACTCGGGCTTGGTC +
Preference number: 4 (lower is better)
Translates to: ADEGCREGADTRTIWGWGVPWST*SNSGLV
Trigger: GACCAAGCCCGAGTTTGACCAGGTGCTCCAGGGCAC...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACGCAGCTTCACTTTGTTaGGTTCTGGGCTGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHAASLC*VLGCLG
Trigger: GCCCAGACAGCCCAGAACTCAACAAAGTGAAGCTGC...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp ATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCCTAGGACCACGTCCTCCTaGACCTCCAGCTCGTCGTCA +
Preference number: 4 (lower is better)
Translates to: MKAAGKAQTPGLSGGGAPRTTSS*TSSSSS
Trigger: TGACGACGAGCTGGAGGTGCAGGAGGACGTGGTCCT...AGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCAAGGACCACGTCCTCCTaGACCTCCAGCTCGTCGTCA +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLARTTSS*TSSSSS
Trigger: TGACGACGAGCTGGAGGTGCAGGAGGACGTGGTCCT...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGTCCTCTTATTGGGGATaGCGGGGGAGTAGGGAACCC +
Preference number: 4 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPASSYWG*RGSREP
Trigger: GGGTTCCCTACTCCCCCGCCATCCCCAATAAGAGGA...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGGCTTGTTCTTGGTGCTaGCTGCTGTGCCCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPAACSWC*LLCPGA
Trigger: TGCTCCAGGGCACAGCAGCCAGCACCAAGAACAAGC...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCACGGGCAGCTTGTTCTTaGTGCTGGCTGCTGTGCCCT +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLARAACS*CWLLCP
Trigger: AGGGCACAGCAGCCAGCACCAAGAACAAGCTGCCCG...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTGGTGGCCGAAGAGCTaGTTTCTTGGGAGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: ADEGCREGADTRTIWGWGWWPKS*FLGRPA
Trigger: TGCTGGCCTCCCAAGAAACCAGCTCTTCGGCCACCA...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCGCAGCTTCACTTTGTTaGGTTCTGGGCTGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: ADEGCREGADTRTIWGWGAASLC*VLGCLG
Trigger: GCCCAGACAGCCCAGAACTCAACAAAGTGAAGCTGC...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACACGGGCTTGGTCTGCTTaGGGTGCCGCAGGATGGGGA +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTRAWSA*GAAGWG
Trigger: TCCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCG...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCCTCTTTGTCCCGGAGCTTaGCTCCAGGCTGGAACACAG +
Preference number: 4 (lower is better)
Translates to: MKAAGKAQTPGLSGGGAPLCPGA*LQAGTQ
Trigger: CTGTGTTCCAGCCTGGAGTCAAGCTCCGGGACAAAG...AGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTCTCCCTGGCCGCTTaGTGGGCTTCTTGGTGGGCG +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFLSLAA*WASWWA
Trigger: CGCCCACCAAGAAGCCCATCAAGCGGCCAGGGAGAG...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106411.10
CDS-3UTR GCA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTACGCTCTCGGGCAGGTaGTCCAGGACCACGTCCTCC +
Preference number: 4 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTTLSGR*SRTTSS
Trigger: GGAGGACGTGGTCCTGGAGCACCTGCCCGAGAGCGT...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCACGCTCTCGGGCAGGTaGTCCAGGACCACGTCCTCC +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPTLSGR*SRTTSS
Trigger: GGAGGACGTGGTCCTGGAGCACCTGCCCGAGAGCGT...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGCCGGTATTCACTCTaGGCCAGCTTGACGAAGGCA +
Preference number: 4 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPASRYSL*ASLTKA
Trigger: TGCCTTCGTCAAGCTGGCGCAGAGTGAATACCGGCT...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCATCCTCTTATTGGGGATaGCGGGGGAGTAGGGAACCC +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLASSYWG*RGSREP
Trigger: GGGTTCCCTACTCCCCCGCCATCCCCAATAAGAGGA...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCAGCTTGTTCTTGGTGCTaGCTGCTGTGCCCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLAACSWC*LLCPGA
Trigger: TGCTCCAGGGCACAGCAGCCAGCACCAAGAACAAGC...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGACTTGGGAGGCCAGCATaGCACCTGCTGTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRLGRPA*HLLSPG
Trigger: TCCAGGAGACAGCAGGTGCCATGCTGGCCTCCCAAG...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGACTTTGTCCCGGAGCTTaGCTCCAGGCTGGAACACAG +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRLCPGA*LQAGTQ
Trigger: CTGTGTTCCAGCCTGGAGTCAAGCTCCGGGACAAAG...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACATAGCCCAGACCTTCTaGATCTTGCACAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHIAQTF*ILHSSS
Trigger: CGAAGAGCTGTGCAAGATTCAGAAGGTCTGGGCTAT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTTCTTGGTGCTGGCTaGTGTGCCCTGGAGCACCTG +
Preference number: 4 (lower is better)
Translates to: GQMHSIMETQGVTGPTLWVLGAG*CALEHL
Trigger: CAGGTGCTCCAGGGCACAGCAGCCAGCACCAAGAAC...CCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCAACTCGGAGCTGTAGCTaGTGGCCGAAGAGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLATRSCS*WPKSWF
Trigger: AAACCAGCTCTTCGGCCACCAGCTACAGCTCCGAGT...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAGATGGCGCTCAGCGCTaGATCCTCGTACACCTTGGA +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRDGAQR*ILVHLG
Trigger: TCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATC...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACTCTCTGCTCTGTGTCTaGAATAGCCCAGACCTTCTG +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHSLLCV*NSPDLL
Trigger: CAGAAGGTCTGGGCTATTCCAGACACAGAGCAGAGA...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAGCTCCTTCAGACCCTTaGTGGAGCGGTCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLAPSDP*WSGPAG
Trigger: GCCAGCTGGACCGCTCCATCAAGGGTCTGAAGGAGC...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTCGTCCCTGGCCGCTTaGTGGGCTTCTTGGTGGGCG +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEASSLAA*WASWWA
Trigger: CGCCCACCAAGAAGCCCATCAAGCGGCCAGGGACGA...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAGGATGGGGAAGACGGTaGGCACTGTGGAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRGWGRR*ALWRSH
Trigger: ATGACTTCTCCACAGTGCTCACCGTCTTCCCCATCC...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCATCAGCAGCCGCTTGCTaGACTCGGAGCTGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: VGLLVWAHRSLFRRTSHSSAAAC*TRSCSW
Trigger: CCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGA...TGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTCAGCAGCCGCTTGCTaGACTCGGAGCTGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPSAAAC*TRSCSW
Trigger: CCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTTCAGCAGCCGCTTGCTaGACTCGGAGCTGTAGCTGG +
Preference number: 4 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTSAAAC*TRSCSW
Trigger: CCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGA...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAAGCCGGTATTCACTCTaGGCCAGCTTGACGAAGGCA +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRSRYSL*ASLTKA
Trigger: TGCCTTCGTCAAGCTGGCGCAGAGTGAATACCGGCT...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCTGGTGCTGGCTGCTGTaGCCTGGAGCACCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGWCWLL*PGAPGQ
Trigger: TTGACCAGGTGCTCCAGGGCACAGCAGCCAGCACCA...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTGGTGCTGGCTGCTGTaGCCTGGAGCACCTGGTCAA +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPWCWLL*PGAPGQ
Trigger: TTGACCAGGTGCTCCAGGGCACAGCAGCCAGCACCA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCGTGCCCTGGAGCACCTaGTCAAACTCGGGCTTGGTC +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGVPWST*SNSGLV
Trigger: GACCAAGCCCGAGTTTGACCAGGTGCTCCAGGGCAC...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCGGGCAGCTTGTTCTTaGTGCTGGCTGCTGTGCCCT +
Preference number: 4 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTRAACS*CWLLCP
Trigger: AGGGCACAGCAGCCAGCACCAAGAACAAGCTGCCCG...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACACGGGCAGCTTGTTCTTaGTGCTGGCTGCTGTGCCCT +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTRAACS*CWLLCP
Trigger: AGGGCACAGCAGCCAGCACCAAGAACAAGCTGCCCG...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCAGTCTTCTAGAGCTTTaGCCCCAATGGTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: ADEGCREGADTRTIWGWGSLLEL*PQWSPW
Trigger: CCATGGAGACCATTGGGGCCAAAGCTCTAGAAGACT...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACACTTGGGAGGCCAGCATaGCACCTGCTGTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTLGRPA*HLLSPG
Trigger: TCCAGGAGACAGCAGGTGCCATGCTGGCCTCCCAAG...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCCTTGGGAGGCCAGCATaGCACCTGCTGTCTCCTGGA +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGLGRPA*HLLSPG
Trigger: TCCAGGAGACAGCAGGTGCCATGCTGGCCTCCCAAG...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGGATGGCGCTCAGCGCTaGATCCTCGTACACCTTGGA +
Preference number: 4 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVDGAQR*ILVHLG
Trigger: TCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATC...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAAGTTCTCCAGCTTCATaGGTCGGCTCTCAAAGGACG +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRSSPAS*VGSQRT
Trigger: CGTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACT...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACGGTAGTAGACATTCATaGAGTCTTGGTTCCGACCAT +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHGSRHS*SLGSDH
Trigger: ATGGTCGGAACCAAGACTTCATGAATGTCTACTACC...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCGGTGATGCTCAGGGATaGTCTCCATCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGGDAQG*SPSAAG
Trigger: ACCGGCTGCTGATGGAGATCATCCCTGAGCATCACC...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGCCATCCTATTCGGGCTTGGTCTGCTTaGGGTGCCGCAGGATGGGGA +
Preference number: 4 (lower is better)
Translates to: TSMGEGMKADQGEACHPIRAWSA*GAAGWG
Trigger: TCCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCG...AATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTGGATGGCATTGCTTGTaGGCTCATGAACAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGGWHCL*AHEQCR
Trigger: ACGGCACTGTTCATGAGCTCACAAGCAATGCCATCC...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCAATAGCCCAGACCTTCTaGATCTTGCACAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLAIAQTF*ILHSSS
Trigger: CGAAGAGCTGTGCAAGATTCAGAAGGTCTGGGCTAT...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTCCCCGTAGGTCTCCTTaGCAATGTCTTTCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGPRRSP*QCLSEP
Trigger: AGGCTCAGAAAGACATTGTCAAGGAGACCTACGGGG...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACAAGCGTCTCCTCCTCCTaGTTCAGTTTGTCCTCGATC +
Preference number: 4 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTSVSSS*FSLSSI
Trigger: GATCGAGGACAAACTGAAGCAGGAGGAGGAGACGCT...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTTGGTCTGCTTGAGGTaGCGCAGGATGGGGAAGACG +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPLVCLR*RRMGKT
Trigger: CGTCTTCCCCATCCTGCGGCACCTCAAGCAGACCAA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCTTGGTCTGCTTGAGGTaGCGCAGGATGGGGAAGACG +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGLVCLR*RRMGKT
Trigger: CGTCTTCCCCATCCTGCGGCACCTCAAGCAGACCAA...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTGCAGCTTGTTCTTGGTaGTGGCTGCTGTGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTAACSW*WLLCPG
Trigger: TCCAGGGCACAGCAGCCAGCACCAAGAACAAGCTGC...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGGGTTACCCAAGACTTTaGAGATGTAGGTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPAGYPRL*RCRCSA
Trigger: TGCTGAGCACCTACATCTGCAAAGTCTTGGGTAACC...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCAATCATGTCTCCCACCTaGTCCACGCGGTACTTAATG +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLAIMSPT*STRYLM
Trigger: CATTAAGTACCGCGTGGAGCAGGTGGGAGACATGAT...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTCCTCTTATTGGGGATaGCGGGGGAGTAGGGAACCC +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPSSYWG*RGSREP
Trigger: GGGTTCCCTACTCCCCCGCCATCCCCAATAAGAGGA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCGGAGCTGTAGCTGGTaGCCGAAGAGCTGGTTTCTC +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFRSCSW*PKSWFL
Trigger: GAGAAACCAGCTCTTCGGCCACCAGCTACAGCTCCG...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021147.14
CDS-3UTR CCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCGATGGCGCTCAGCGCTaGATCCTCGTACACCTTGGA +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPDGAQR*ILVHLG
Trigger: TCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATC...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCAAGCTTGACTCCAGGCTaGAACACAGGTAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: KCMVRAALGTQPFPAVLASLTPG*NTGRFF
Trigger: GAAGAACCTACCTGTGTTCCAGCCTGGAGTCAAGCT...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
3UTR CAA 72 bp CAGACACCAGGACTATCTGGGGGTGGGGCTCCTGGTTaGGGCACACAGGTCTCTGTTCCGAAGGACTTCACA +
Preference number: 4 (lower is better)
Translates to: QTPGLSGGGAPG*GTQVSVPKDFT
Trigger: TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCCAGATAGTCCTGGTGTCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAGGTGATGCTCAGGGATaGTCTCCATCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLGDAQG*SPSAAG
Trigger: ACCGGCTGCTGATGGAGATCATCCCTGAGCATCACC...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTGGATGGGGAAGACGGTaGGCACTGTGGAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFGWGRR*ALWRSH
Trigger: ATGACTTCTCCACAGTGCTCACCGTCTTCCCCATCC...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTATAGCCCAGACCTTCTaGATCTTGCACAGCTCTTCG +
Preference number: 4 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGIAQTF*ILHSSS
Trigger: CGAAGAGCTGTGCAAGATTCAGAAGGTCTGGGCTAT...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGACGCTCTCGGGCAGGTaGTCCAGGACCACGTCCTCC +
Preference number: 4 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRTLSGR*SRTTSS
Trigger: GGAGGACGTGGTCCTGGAGCACCTGCCCGAGAGCGT...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACAAGAGGAACTGCTTTTaGGAAAATGCTCCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHKRNCF*ENAPSD
Trigger: GTCTGAAGGAGCATTTTCGCAAAAGCAGTTCCTCTT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTGGTCTGCTTGAGGTaGCGCAGGATGGGGAAGACG +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPLVCLR*RRMGKT
Trigger: CGTCTTCCCCATCCTGCGGCACCTCAAGCAGACCAA...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGACCTTCTGAATCTTaGACAGCTCTTCGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPARPSES*TALRVH
Trigger: ATGGACTCGAAGAGCTGTGCAAGATTCAGAAGGTCT...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp ATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCCTTACTCCACAGCCTTCTaGATTTTGGCCATACTTCCC +
Preference number: 4 (lower is better)
Translates to: MKAAGKAQTPGLSGGGAPYSTAF*ILAILP
Trigger: GGGAAGTATGGCCAAAATCCAGAAGGCTGTGGAGTA...AGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGTGTCTTTCCTCTTATTaGGGATGGCGGGGGAGTAGG +
Preference number: 4 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVCLSSY*GWRGSR
Trigger: CCTACTCCCCCGCCATCCCCAATAAGAGGAAAGACA...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCACTCGGAGCTGTAGCTaGTGGCCGAAGAGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGTRSCS*WPKSWF
Trigger: AAACCAGCTCTTCGGCCACCAGCTACAGCTCCGAGT...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTACTCGGAGCTGTAGCTaGTGGCCGAAGAGCTGGTTT +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFTRSCS*WPKSWF
Trigger: AAACCAGCTCTTCGGCCACCAGCTACAGCTCCGAGT...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGGTTACAGCCACCAGCTaGATCAGCTCAGACTTCTCC +
Preference number: 4 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVVTATS*ISSDFS
Trigger: GGAGAAGTCTGAGCTGATCCAGCTGGTGGCTGTAAC...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCATGGTGGCCGAAGAGCTaGTTTCTTGGGAGGCCAGCA +
Preference number: 4 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPWWPKS*FLGRPA
Trigger: TGCTGGCCTCCCAAGAAACCAGCTCTTCGGCCACCA...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCAGTTCTCCAGCTTCATaGGTCGGCTCTCAAAGGACG +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPSSPAS*VGSQRT
Trigger: CGTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACT...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAAGTTCTCCAGCTTCATaGGTCGGCTCTCAAAGGACG +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTSSPAS*VGSQRT
Trigger: CGTCCTTTGAGAGCCGACTCATGAAGCTGGAGAACT...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGGCTCCTTCAGACCCTTaGTGGAGCGGTCCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRAPSDP*WSGPAG
Trigger: GCCAGCTGGACCGCTCCATCAAGGGTCTGAAGGAGC...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCAGGATGGCATTGCTTGTaGGCTCATGAACAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: VGLLVWAHRSLFRRTSHSGWHCL*AHEQCR
Trigger: ACGGCACTGTTCATGAGCTCACAAGCAATGCCATCC...TGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCCCCGTAGGTCTCCTTaGCAATGTCTTTCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFPRRSP*QCLSEP
Trigger: AGGCTCAGAAAGACATTGTCAAGGAGACCTACGGGG...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACAGGTTACCCAAGACTTTaGAGATGTAGGTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTGYPRL*RCRCSA
Trigger: TGCTGAGCACCTACATCTGCAAAGTCTTGGGTAACC...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTCACCTTTAGCCAGCTaGGCTGGTAGGTCTGGATCT +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPSPLAS*AGRSGS
Trigger: AGATCCAGACCTACCAGCGCAGCTGGCTAAAGGTGA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACACGTTCCTTAATCATCTaGCGCTCTTTGTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTRSLII*RSLSRS
Trigger: GCTCCGGGACAAAGAGCGGCAGATGATTAAGGAACG...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGACAGCCTTCTGGATTTTaGCCATACTTCCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRQPSGF*PYFPGT
Trigger: AGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTG...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACAGCCTTCTGGATTTTaGCCATACTTCCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTQPSGF*PYFPGT
Trigger: AGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTG...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCTGTCTTTCCTCTTATTaGGGATGGCGGGGGAGTAGG +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGCLSSY*GWRGSR
Trigger: CCTACTCCCCCGCCATCCCCAATAAGAGGAAAGACA...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GCAGACCAGGGTGAAGCCTGCCATCCTATTCTTGGTATCCACATGGCTGCTGGCGTTACAGCCACCAGCTaGATCAGCTCAGACTTCTCC +
Preference number: 4 (lower is better)
Translates to: ADQGEACHPILGIHMAAGVTATS*ISSDFS
Trigger: GGAGAAGTCTGAGCTGATCCAGCTGGTGGCTGTAAC...GCCAGCAGCCATGTGGATACCAAGAATAGGATGGCAGGCTTCACCCTGGTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGCCATCCTATTGGTGATGCTCAGGGATaGTCTCCATCAGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: TSMGEGMKADQGEACHPIGDAQG*SPSAAG
Trigger: ACCGGCTGCTGATGGAGATCATCCCTGAGCATCACC...AATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGAAGGTTTTCTTCTGGTaGTGCTCAGGGATGATCTCC +
Preference number: 4 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVKVFFW*CSGMIS
Trigger: GGAGATCATCCCTGAGCATCACCAGAAGAAAACCTT...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGAAGGTTTTCTTCTGGTaGTGCTCAGGGATGATCTCC +
Preference number: 4 (lower is better)
Translates to: GQMHSIMETQGVTGPTLWKVFFW*CSGMIS
Trigger: GGAGATCATCCCTGAGCATCACCAGAAGAAAACCTT...CCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCGGATGGGGAAGACGGTaGGCACTGTGGAGAAGTCAT +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEAGWGRR*ALWRSH
Trigger: ATGACTTCTCCACAGTGCTCACCGTCTTCCCCATCC...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCATTGCTTGTGAGCTCATaGACAGTGCCGTCTTTAGGC +
Preference number: 4 (lower is better)
Translates to: VGLLVWAHRSLFRRTSHSLLVSS*TVPSLG
Trigger: GCCTAAAGACGGCACTGTTCATGAGCTCACAAGCAA...TGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGCCATCCTATTCTTTGTCCCGGAGCTTaGCTCCAGGCTGGAACACAG +
Preference number: 4 (lower is better)
Translates to: TSMGEGMKADQGEACHPILCPGA*LQAGTQ
Trigger: CTGTGTTCCAGCCTGGAGTCAAGCTCCGGGACAAAG...AATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAAGCGTCTCCTCCTCCTaGTTCAGTTTGTCCTCGATC +
Preference number: 4 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLSVSSS*FSLSSI
Trigger: GATCGAGGACAAACTGAAGCAGGAGGAGGAGACGCT...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACATGTAGGTTCTCTGTCTaGTTGTGCACAGGGATGATA +
Preference number: 4 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTCRFSV*LCTGMI
Trigger: TATCATCCCTGTGCACAAGCAGACAGAGAACCTACA...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGGTTCTTGGTGCTGGCTaGTGTGCCCTGGAGCACCTG +
Preference number: 4 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRVLGAG*CALEHL
Trigger: CAGGTGCTCCAGGGCACAGCAGCCAGCACCAAGAAC...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGCGTTCCTTAATCATCTaGCGCTCTTTGTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPRSLII*RSLSRS
Trigger: GCTCCGGGACAAAGAGCGGCAGATGATTAAGGAACG...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCACGTTCCTTAATCATCTaGCGCTCTTTGTCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPRSLII*RSLSRS
Trigger: GCTCCGGGACAAAGAGCGGCAGATGATTAAGGAACG...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTAGACCTTCTGAATCTTaGACAGCTCTTCGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGRPSES*TALRVH
Trigger: ATGGACTCGAAGAGCTGTGCAAGATTCAGAAGGTCT...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACAGAGTTCTGGGCTGTCTaGGCTATTGTCCTGAAAATA +
Preference number: 4 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTEFWAV*AIVLKI
Trigger: TATTTTCAGGACAATAGCCCAGACAGCCCAGAACTC...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTGTCTTTCCTCTTATTaGGGATGGCGGGGGAGTAGG +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPCLSSY*GWRGSR
Trigger: CCTACTCCCCCGCCATCCCCAATAAGAGGAAAGACA...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCGCTTGTTCTTGGTGCTaGCTGCTGTGCCCTGGAGCA +
Preference number: 4 (lower is better)
Translates to: SAFDHSVWKNILEQPRTAACSWC*LLCPGA
Trigger: TGCTCCAGGGCACAGCAGCCAGCACCAAGAACAAGC...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTCTCTGCTCTGTGTCTaGAATAGCCCAGACCTTCTG +
Preference number: 4 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPSLLCV*NSPDLL
Trigger: CAGAAGGTCTGGGCTATTCCAGACACAGAGCAGAGA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTTCTCTGCTCTGTGTCTaGAATAGCCCAGACCTTCTG +
Preference number: 4 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTSLLCV*NSPDLL
Trigger: CAGAAGGTCTGGGCTATTCCAGACACAGAGCAGAGA...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTATGTTTCAGAAGGTTCTaGGCCTTACGGATCGTCCCT +
Preference number: 4 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLCFRRF*ALRIVP
Trigger: AGGGACGATCCGTAAGGCTCAGAACCTTCTGAAACA...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCATTGCTTGTGAGCTCATaGACAGTGCCGTCTTTAGGC +
Preference number: 4 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPLLVSS*TVPSLG
Trigger: GCCTAAAGACGGCACTGTTCATGAGCTCACAAGCAA...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp CCACTGGTTTATGAGTCCAATGACATGCTAGGCATGCCGGCAGAACTGGGCAGACCCCGTAGGTCTCCTTaGCAATGTCTTTCTGAGCCT +
Preference number: 4 (lower is better)
Translates to: PLVYESNDMLGMPAELGRPRRSP*QCLSEP
Trigger: AGGCTCAGAAAGACATTGTCAAGGAGACCTACGGGG...TCTGCCCAGTTCTGCCGGCATGCCTAGCATGTCATTGGACTCATAAACCAGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGTTCTCTGTCTGCTTGTaGACAGGGATGATAGAGTTC +
Preference number: 4 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVFSVCL*TGMIEF
Trigger: GAACTCTATCATCCCTGTGCACAAGCAGACAGAGAA...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CTGACAGCTAGCGGACCCCCAGGTGTCAGAGCATTCCAGAGCTCAGCATCCGGAAAGAGGAACTGCTTTTaGGAAAATGCTCCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: LTASGPPGVRAFQSSASGKRNCF*ENAPSD
Trigger: GTCTGAAGGAGCATTTTCGCAAAAGCAGTTCCTCTT...TCCGGATGCTGAGCTCTGGAATGCTCTGACACCTGGGGGTCCGCTAGCTGTCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGATTCCCATCTAGACCATaGTGGGAATACTGTTTCAGA +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRFPSRP*WEYCFR
Trigger: TCTGAAACAGTATTCCCAGCATGGTCTAGATGGGAA...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAGTTCTTGGTGCTGGCTaGTGTGCCCTGGAGCACCTG +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEVLGAG*CALEHL
Trigger: CAGGTGCTCCAGGGCACAGCAGCCAGCACCAAGAAC...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCAGCCTTCTGGATTTTaGCCATACTTCCCAGGTACT +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFQPSGF*PYFPGT
Trigger: AGTACCTGGGAAGTATGGCCAAAATCCAGAAGGCTG...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTTACTCCACAGCCTTCTaGATTTTGGCCATACTTCCC +
Preference number: 4 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTYSTAF*ILAILP
Trigger: GGGAAGTATGGCCAAAATCCAGAAGGCTGTGGAGTA...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAGTGCCCTGGAGCACCTaGTCAAACTCGGGCTTGGTC +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEVPWST*SNSGLV
Trigger: GACCAAGCCCGAGTTTGACCAGGTGCTCCAGGGCAC...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAAGCTTGACTCCAGGCTaGAACACAGGTAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLSLTPG*NTGRFF
Trigger: GAAGAACCTACCTGTGTTCCAGCCTGGAGTCAAGCT...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp ACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGCCATCCTATTGAAGAGCTGGTTTCTTaGGAGGCCAGCATGGCACCT +
Preference number: 4 (lower is better)
Translates to: TSMGEGMKADQGEACHPIEELVS*EASMAP
Trigger: AGGTGCCATGCTGGCCTCCCAAGAAACCAGCTCTTC...AATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACATGTAGGTTCTCTGTCTaGTTGTGCACAGGGATGATA +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTCRFSV*LCTGMI
Trigger: TATCATCCCTGTGCACAAGCAGACAGAGAACCTACA...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAGCAGCTTGTTCTTGGTaGTGGCTGCTGTGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEAACSW*WLLCPG
Trigger: TCCAGGGCACAGCAGCCAGCACCAAGAACAAGCTGC...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGCAGCTTGTTCTTGGTaGTGGCTGCTGTGCCCTGGA +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILAACSW*WLLCPG
Trigger: TCCAGGGCACAGCAGCCAGCACCAAGAACAAGCTGC...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCATCATGTCTCCCACCTaGTCCACGCGGTACTTAATG +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEAIMSPT*STRYLM
Trigger: CATTAAGTACCGCGTGGAGCAGGTGGGAGACATGAT...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGAGTTCTGGGCTGTCTaGGCTATTGTCCTGAAAATA +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTEFWAV*AIVLKI
Trigger: TATTTTCAGGACAATAGCCCAGACAGCCCAGAACTC...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCAGTCTTCTAGAGCTTTaGCCCCAATGGTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEASLLEL*PQWSPW
Trigger: CCATGGAGACCATTGGGGCCAAAGCTCTAGAAGACT...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCAGCTTGACTCCAGGCTaGAACACAGGTAGGTTCTTC +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEASLTPG*NTGRFF
Trigger: GAAGAACCTACCTGTGTTCCAGCCTGGAGTCAAGCT...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGATGTCTGGATCATTCTTaGTGTTATCAGCAAAGTCTT +
Preference number: 4 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRCLDHS*CYQQSL
Trigger: AAGACTTTGCTGATAACATCAAGAATGATCCAGACA...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGGGATGGCATTGCTTGTaGGCTCATGAACAGTGCCGT +
Preference number: 4 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRGWHCL*AHEQCR
Trigger: ACGGCACTGTTCATGAGCTCACAAGCAATGCCATCC...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCAACTTCTCCAGGGACTTaGGGATGTAATTGTAGTTGT +
Preference number: 4 (lower is better)
Translates to: VGLLVWAHRSLFRRTSHSTSPGT*GCNCSC
Trigger: ACAACTACAATTACATCCTCAAGTCCCTGGAGAAGT...TGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTTTGACAATGTCTTTCTaGGCCTGTCGAATCTTGTCT +
Preference number: 4 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFLTMSF*ACRILS
Trigger: AGACAAGATTCGACAGGCTCAGAAAGACATTGTCAA...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTGTAGGTTCTCTGTCTaGTTGTGCACAGGGATGATA +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPCRFSV*LCTGMI
Trigger: TATCATCCCTGTGCACAAGCAGACAGAGAACCTACA...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAAAGAGGAACTGCTTTTaGGAAAATGCTCCTTCAGAC +
Preference number: 4 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTKRNCF*ENAPSD
Trigger: GTCTGAAGGAGCATTTTCGCAAAAGCAGTTCCTCTT...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CCACTGGTTTATGAGTCCAATGACATGCTAGGCATGCCGGCAGAACTGGGCAGACGAATCTTGTCTCTCTaGTCTGTGTCTGGAATAGCC +
Preference number: 4 (lower is better)
Translates to: PLVYESNDMLGMPAELGRRILSL*SVSGIA
Trigger: GGCTATTCCAGACACAGAGCAGAGAGACAAGATTCG...TCTGCCCAGTTCTGCCGGCATGCCTAGCATGTCATTGGACTCATAAACCAGTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAGAAGAGCTGGTTTCTTaGGAGGCCAGCATGGCACCT +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEEELVS*EASMAP
Trigger: AGGTGCCATGCTGGCCTCCCAAGAAACCAGCTCTTC...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGCGGAGCTGTAGCTGGTaGCCGAAGAGCTGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILRSCSW*PKSWFL
Trigger: AAGAAACCAGCTCTTCGGCCACCAGCTACAGCTCCG...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAACGGAGCTGTAGCTGGTaGCCGAAGAGCTGGTTTCTT +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGERSCSW*PKSWFL
Trigger: AAGAAACCAGCTCTTCGGCCACCAGCTACAGCTCCG...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCGGTAGTAGACATTCATaGAGTCTTGGTTCCGACCAT +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEAGSRHS*SLGSDH
Trigger: ATGGTCGGAACCAAGACTTCATGAATGTCTACTACC...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTGACAATGTCTTTCTaGGCCTGTCGAATCTTGTCT +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPLTMSF*ACRILS
Trigger: AGACAAGATTCGACAGGCTCAGAAAGACATTGTCAA...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCATTCCCATCTAGACCATaGTGGGAATACTGTTTCAGA +
Preference number: 4 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPFPSRP*WEYCFR
Trigger: TCTGAAACAGTATTCCCAGCATGGTCTAGATGGGAA...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCAGCCGGTATTCACTCTaGGCCAGCTTGACGAAGGCA +
Preference number: 4 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFSRYSL*ASLTKA
Trigger: TGCCTTCGTCAAGCTGGCGCAGAGTGAATACCGGCT...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCGGTTACCCAAGACTTTaGAGATGTAGGTGCTCAGCA +
Preference number: 4 (lower is better)
Translates to: SAFDHSVWKNILEQPRTAGYPRL*RCRCSA
Trigger: TGCTGAGCACCTACATCTGCAAAGTCTTGGGTAACC...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCACTTAGTAAGTTCAGCTaGAGGTTACCCAAGACTTTG +
Preference number: 4 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPLSKFS*RLPKTL
Trigger: CAAAGTCTTGGGTAACCTGCAGCTGAACTTACTAAG...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGCTTAGTAAGTTCAGCTaGAGGTTACCCAAGACTTTG +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPLSKFS*RLPKTL
Trigger: CAAAGTCTTGGGTAACCTGCAGCTGAACTTACTAAG...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGTCACCTTTAGCCAGCTaGGCTGGTAGGTCTGGATCT +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILSPLAS*AGRSGS
Trigger: AGATCCAGACCTACCAGCGCAGCTGGCTAAAGGTGA...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCCGAATCTTGTCTCTCTaGTCTGTGTCTGGAATAGCC +
Preference number: 4 (lower is better)
Translates to: SAFDHSVWKNILEQPRTARILSL*SVSGIA
Trigger: GGCTATTCCAGACACAGAGCAGAGAGACAAGATTCG...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACAGTTGTATTCCTTGTCTaGATCATTCTTGATGTTATC +
Preference number: 4 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTVVFLV*IILDVI
Trigger: GATAACATCAAGAATGATCCAGACAAGGAATACAAC...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGGATCCTCGTACACCTTaGACTTGCTTAGTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPDPRTP*TCLVSS
Trigger: TGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATC...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAGTTACAGCCACCAGCTaGATCAGCTCAGACTTCTCC +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEVTATS*ISSDFS
Trigger: GGAGAAGTCTGAGCTGATCCAGCTGGTGGCTGTAAC...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGCCATCCTATTGGTAGTAGACATTCATaGAGTCTTGGTTCCGACCAT +
Preference number: 4 (lower is better)
Translates to: TSMGEGMKADQGEACHPIGSRHS*SLGSDH
Trigger: ATGGTCGGAACCAAGACTTCATGAATGTCTACTACC...AATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGTGTTTCAGAAGGTTCTaGGCCTTACGGATCGTCCCT +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILCFRRF*ALRIVP
Trigger: AGGGACGATCCGTAAGGCTCAGAACCTTCTGAAACA...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAAGGTTTTCTTCTGGTaGTGCTCAGGGATGATCTCC +
Preference number: 4 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRKVFFW*CSGMIS
Trigger: GGAGATCATCCCTGAGCATCACCAGAAGAAAACCTT...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACACTCATGTCTGGATCATTCTTaGTGTTATCAGCAAAGTCTT +
Preference number: 4 (lower is better)
Translates to: VGLLVWAHRSLFRRTSHSCLDHS*CYQQSL
Trigger: AAGACTTTGCTGATAACATCAAGAATGATCCAGACA...TGAGTGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCAGCGTCTCCTCCTCCTaGTTCAGTTTGTCCTCGATC +
Preference number: 4 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFSVSSS*FSLSSI
Trigger: GATCGAGGACAAACTGAAGCAGGAGGAGGAGACGCT...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGTGGAAGTCCAGAAGCTaGTGTAGGAACAGGATGGCA +
Preference number: 4 (lower is better)
Translates to: GARISAFDHSVWKNILEQWKSRS*CRNRMA
Trigger: TGCCATCCTGTTCCTACAGCAGCTTCTGGACTTCCA...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGTGGAAGTCCAGAAGCTaGTGTAGGAACAGGATGGCA +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILWKSRS*CRNRMA
Trigger: TGCCATCCTGTTCCTACAGCAGCTTCTGGACTTCCA...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGATCATGTCTCCCACCTaGTCCACGCGGTACTTAATG +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILIMSPT*STRYLM
Trigger: CATTAAGTACCGCGTGGAGCAGGTGGGAGACATGAT...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCCCATCTAGACCATGCTaGGAATACTGTTTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: SAFDHSVWKNILEQPRTAPSRPC*EYCFRR
Trigger: CCTTCTGAAACAGTATTCCCAGCATGGTCTAGATGG...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCGATCCTCGTACACCTTaGACTTGCTTAGTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEADPRTP*TCLVSS
Trigger: TGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATC...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp ACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGCCATCCTATTACTTCTCCAGGGACTTaGGGATGTAATTGTAGTTGT +
Preference number: 4 (lower is better)
Translates to: TSMGEGMKADQGEACHPITSPGT*GCNCSC
Trigger: ACAACTACAATTACATCCTCAAGTCCCTGGAGAAGT...AATAGGATGGCAGGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCAGTCTTCTAGAGCTTTaGCCCCAATGGTCTCCATGG +
Preference number: 4 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFSLLEL*PQWSPW
Trigger: CCATGGAGACCATTGGGGCCAAAGCTCTAGAAGACT...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCGATCCTCGTACACCTTaGACTTGCTTAGTAAGTTCA +
Preference number: 4 (lower is better)
Translates to: SAFDHSVWKNILEQPRTADPRTP*TCLVSS
Trigger: TGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATC...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTGTCTGGATCATTCTTaGTGTTATCAGCAAAGTCTT +
Preference number: 4 (lower is better)
Translates to: LSPFTSMGEGMKADQGEACLDHS*CYQQSL
Trigger: AAGACTTTGCTGATAACATCAAGAATGATCCAGACA...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGTTGACAATGTCTTTCTaGGCCTGTCGAATCTTGTCT +
Preference number: 4 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRLTMSF*ACRILS
Trigger: AGACAAGATTCGACAGGCTCAGAAAGACATTGTCAA...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGAGACCTTCTGAATCTTaGACAGCTCTTCGAGTCCAT +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILRPSES*TALRVH
Trigger: ATGGACTCGAAGAGCTGTGCAAGATTCAGAAGGTCT...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAGAGTTCTGGGCTGTCTaGGCTATTGTCCTGAAAATA +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEEFWAV*AIVLKI
Trigger: TATTTTCAGGACAATAGCCCAGACAGCCCAGAACTC...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAACCATCTAGACCATGCTaGGAATACTGTTTCAGAAGG +
Preference number: 4 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEPSRPC*EYCFRR
Trigger: CCTTCTGAAACAGTATTCCCAGCATGGTCTAGATGG...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR TCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGACTTCTCCAGGGACTTaGGGATGTAATTGTAGTTGT +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILTSPGT*GCNCSC
Trigger: ACAACTACAATTACATCCTCAAGTCCCTGGAGAAGT...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCTTCTCTGTCTGCTTGTaGACAGGGATGATAGAGTTC +
Preference number: 4 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFFSVCL*TGMIEF
Trigger: GAACTCTATCATCCCTGTGCACAAGCAGACAGAGAA...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR GCA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCTTAGTAAGTTCAGCTaGAGGTTACCCAAGACTTTG +
Preference number: 4 (lower is better)
Translates to: GARISAFDHSVWKNILEQLSKFS*RLPKTL
Trigger: CAAAGTCTTGGGTAACCTGCAGCTGAACTTACTAAG...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp GGCTCTGGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGTTGTATTCCTTGTCTaGATCATTCTTGATGTTATC +
Preference number: 4 (lower is better)
Translates to: GSGARISAFDHSVWKNILVVFLV*IILDVI
Trigger: GATAACATCAAGAATGATCCAGACAAGGAATACAAC...CAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCCAGAGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CCA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCGTTGTATTCCTTGTCTaGATCATTCTTGATGTTATC +
Preference number: 4 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFVVFLV*IILDVI
Trigger: GATAACATCAAGAATGATCCAGACAAGGAATACAAC...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS GCA 90 bp CAGCGGGAGATGCGGACCACGTCTCTGAGCACGCTCTCGGGCAGGTaGTCCAGGACCACGTCCTCCTGCACCTCCAGCTCGTCGTCAGCA +
Preference number: 5 (lower is better)
Translates to: QREMRTTSLSTLSGR*SRTTSSCTSSSSSA
Trigger: TGCTGACGACGAGCTGGAGGTGCAGGAGGACGTGGTCCTGGAGCACCTGCCCGAGAGCGTGCTCAGAGACGTGGTCCGCATCTCCCGCTG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
ENSMUST00000126731.8
CDS-3UTR CAA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACACGGGGGAGACCACCTaGCTGTGCCGGGTCATCAGA +
Preference number: 5 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHTGETT*LCRVIR
Trigger: TCTGATGACCCGGCACAGCAAGGTGGTCTCCCCCGT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACATCGTCCCTGGCCGCTaGATGGGCTTCTTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHIVPGR*MGFLVG
Trigger: GCCCACCAAGAAGCCCATCAAGCGGCCAGGGACGAT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS GCA 90 bp GGAGGAGCACGGGGGAGACCACCTTGCTGTGCCGGGTCATCAGACTaGGGAACTCCGACTCCAGGGACTCCTTCCCTCGCTCAAACAGCA +
Preference number: 5 (lower is better)
Translates to: GGARGRPPCCAGSSD*GTPTPGTPSLAQTA
Trigger: TGCTGTTTGAGCGAGGGAAGGAGTCCCTGGAGTCGGAGTTCCGCAGTCTGATGACCCGGCACAGCAAGGTGGTCTCCCCCGTGCTCCTCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
ENSMUST00000126731.8
CDS-3UTR CAA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCACTCTGCGCCAGCTaGACGAAGGCACTGACGCAG +
Preference number: 5 (lower is better)
Translates to: ADEGCREGADTRTIWGWGSLCAS*TKALTQ
Trigger: CTGCGTCAGTGCCTTCGTCAAGCTGGCGCAGAGTGA...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp AAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTTCCCGGCCGTCCTGGCATCCTCCTGCTTCAGTTaGTCCTCGATCTCCCGCCGC +
Preference number: 5 (lower is better)
Translates to: KCMVRAALGTQPFPAVLASSCFS*SSISRR
Trigger: GCGGCGGGAGATCGAGGACAAACTGAAGCAGGAGGA...TGCCAGGACGGCCGGGAACGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGTCGGGCTTGGTCTGCTaGAGGTGCCGCAGGATGGGG +
Preference number: 5 (lower is better)
Translates to: GQMHSIMETQGVTGPTLWSGLVC*RCRRMG
Trigger: CCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCGA...CCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACATCATCTGCCGCTCTTaGTCCCGGAGCTTGACTCCA +
Preference number: 5 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHIICRS*SRSLTP
Trigger: TGGAGTCAAGCTCCGGGACAAAGAGCGGCAGATGAT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CAAGAACAGCCCCTCTCCCTGACAGCAGCTCCTGGAGGAGGGGCCGCTGACCACAGCAGCTTCACTTTGTaGAGTTCTGGGCTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: QEQPLSLTAAPGGGAADHSSFTL*SSGLSG
Trigger: CCCAGACAGCCCAGAACTCAACAAAGTGAAGCTGCT...GTGGTCAGCGGCCCCTCCTCCAGGAGCTGCTGTCAGGGAGAGGGGCTGTTCTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGATGCTCCTTCAGACCCTaGATGGAGCGGTCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRCSFRP*MERSSW
Trigger: CCAGCTGGACCGCTCCATCAAGGGTCTGAAGGAGCA...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGATCGTCCCTGGCCGCTaGATGGGCTTCTTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: GQMHSIMETQGVTGPTLWIVPGR*MGFLVG
Trigger: GCCCACCAAGAAGCCCATCAAGCGGCCAGGGACGAT...CCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGGGGTGGGGCTCCTGGTTTGGGCACACAGGTCTCTGTTCCGAAGGACTTCACATCACTCTGCGCCAGCTaGACGAAGGCACTGACGCAG +
Preference number: 5 (lower is better)
Translates to: GGGAPGLGTQVSVPKDFTSLCAS*TKALTQ
Trigger: CTGCGTCAGTGCCTTCGTCAAGCTGGCGCAGAGTGA...TGTGAAGTCCTTCGGAACAGAGACCTGTGTGCCCAAACCAGGAGCCCCACCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACATCGGGCTTGGTCTGCTaGAGGTGCCGCAGGATGGGG +
Preference number: 5 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTSGLVC*RCRRMG
Trigger: CCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCGA...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGATGGTCAAACTCGGGCTaGGTCTGCTTGAGGTGCCGC +
Preference number: 5 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRWSNSG*VCLRCR
Trigger: GCGGCACCTCAAGCAGACCAAGCCCGAGTTTGACCA...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTCGAAGAGCTGGTTTCTaGGGAGGCCAGCATGGCACC +
Preference number: 5 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGRRAGF*GGQHGT
Trigger: GGTGCCATGCTGGCCTCCCAAGAAACCAGCTCTTCG...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTACGGGGGAGACCACCTaGCTGTGCCGGGTCATCAGA +
Preference number: 5 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFTGETT*LCRVIR
Trigger: TCTGATGACCCGGCACAGCAAGGTGGTCTCCCCCGT...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGACGCTTGATGGGCTTCTaGGTGGGCGTGTCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRRLMGF*VGVSFL
Trigger: GAGGAAAGACACGCCCACCAAGAAGCCCATCAAGCG...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGCGAAGAGCTGGTTTCTaGGGAGGCCAGCATGGCACC +
Preference number: 5 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVRRAGF*GGQHGT
Trigger: GGTGCCATGCTGGCCTCCCAAGAAACCAGCTCTTCG...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp ATCCACATGGCTGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACATCCTCCTGCTTCAGTTaGTCCTCGATCTCCCGCCGC +
Preference number: 5 (lower is better)
Translates to: IHMAAGQMHSIMETQGVTSSCFS*SSISRR
Trigger: GCGGCGGGAGATCGAGGACAAACTGAAGCAGGAGGA...TGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCAGCCATGTGGAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGCGCTTGATGGGCTTCTaGGTGGGCGTGTCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: GQMHSIMETQGVTGPTLWRLMGF*VGVSFL
Trigger: GAGGAAAGACACGCCCACCAAGAAGCCCATCAAGCG...CCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS TCA 90 bp GGTTACCCAAGACTTTGCAGATGTAGGTGCTCAGCAGCCGCTTGCTaGACTCGGAGCTGTAGCTGGTGGCCGAAGAGCTGGTTTCTCGGG +
Preference number: 5 (lower is better)
Translates to: GYPRLCRCRCSAAAC*TRSCSWWPKSWFLG
Trigger: CCCGAGAAACCAGCTCTTCGGCCACCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGAGCACCTACATCTGCAAAGTCTTGGGTAACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000021147.14
CDS-3UTR CAA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCACGGGGGAGACCACCTaGCTGTGCCGGGTCATCAGA +
Preference number: 5 (lower is better)
Translates to: LSPFTSMGEGMKADQGEATGETT*LCRVIR
Trigger: TCTGATGACCCGGCACAGCAAGGTGGTCTCCCCCGT...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCCGCTTGATGGGCTTCTaGGTGGGCGTGTCTTTCCTC +
Preference number: 5 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPRLMGF*VGVSFL
Trigger: GAGGAAAGACACGCCCACCAAGAAGCCCATCAAGCG...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCTCGGGCTTGGTCTGCTaGAGGTGCCGCAGGATGGGG +
Preference number: 5 (lower is better)
Translates to: SAFDHSVWKNILEQPRTASGLVC*RCRRMG
Trigger: CCCCATCCTGCGGCACCTCAAGCAGACCAAGCCCGA...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp AAGAACCAACCATCTCCCAAGTGCATGGTAAGGGCTGCCCTTGGAACACAGCCGTGGTCAAACTCGGGCTaGGTCTGCTTGAGGTGCCGC +
Preference number: 5 (lower is better)
Translates to: KNQPSPKCMVRAALGTQPWSNSG*VCLRCR
Trigger: GCGGCACCTCAAGCAGACCAAGCCCGAGTTTGACCA...CGGCTGTGTTCCAAGGGCAGCCCTTACCATGCACTTGGGAGATGGTTGGTTCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS TCA 90 bp GGTTACCCAAGACTTTGCAGATGTAGGTGCTCAGCAGCCGCTTGCTaGACTCGGAGCTGTAGCTGGTGGCCGAAGAGCTGGTTTCTTGGG +
Preference number: 5 (lower is better)
Translates to: GYPRLCRCRCSAAAC*TRSCSWWPKSWFLG
Trigger: CCCAAGAAACCAGCTCTTCGGCCACCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGAGCACCTACATCTGCAAAGTCTTGGGTAACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CTGACAGCTAGCGGACCCCCAGGTGTCAGAGCATTCCAGAGCTCAGCATCCGGAAGGTTCTCTGTCTGCTaGTGCACAGGGATGATAGAG +
Preference number: 5 (lower is better)
Translates to: LTASGPPGVRAFQSSASGRFSVC*CTGMIE
Trigger: CTCTATCATCCCTGTGCACAAGCAGACAGAGAACCT...TCCGGATGCTGAGCTCTGGAATGCTCTGACACCTGGGGGTCCGCTAGCTGTCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGAGCAGCTTCACTTTGTaGAGTTCTGGGCTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVSSFTL*SSGLSG
Trigger: CCCAGACAGCCCAGAACTCAACAAAGTGAAGCTGCT...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTAAGTCTTCTAGAGCTTaGGCCCCAATGGTCTCCATG +
Preference number: 5 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGKSSRA*APMVSM
Trigger: CATGGAGACCATTGGGGCCAAAGCTCTAGAAGACTT...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGAGTACAGAAAGTCTTCTAGAGCTTaGGCCCCAATGGTCTCCATG +
Preference number: 5 (lower is better)
Translates to: SQPKPLNHWCMAQAGEYRKSSRA*APMVSM
Trigger: CATGGAGACCATTGGGGCCAAAGCTCTAGAAGACTT...TCTGTACTCGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp ATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCTCCTTCGTACACCTTGGACTaGCTTAGTAAGTTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: MKAAGKAQTPGLSGGGAPSYTLD*LSKFSC
Trigger: GCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGA...AGGAGCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp AGGTGGCTGAGCGGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTATCATCTGCCGCTCTTaGTCCCGGAGCTTGACTCCA +
Preference number: 5 (lower is better)
Translates to: RWLSGCPQRVAQNSSKHFIICRS*SRSLTP
Trigger: TGGAGTCAAGCTCCGGGACAAAGAGCGGCAGATGAT...AAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCCGCTCAGCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCTCCTCCTGCTTCAGTTaGTCCTCGATCTCCCGCCGC +
Preference number: 5 (lower is better)
Translates to: SAFDHSVWKNILEQPRTASSCFS*SSISRR
Trigger: GCGGCGGGAGATCGAGGACAAACTGAAGCAGGAGGA...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCTGGTCAAACTCGGGCTaGGTCTGCTTGAGGTGCCGC +
Preference number: 5 (lower is better)
Translates to: SAFDHSVWKNILEQPRTAWSNSG*VCLRCR
Trigger: GCGGCACCTCAAGCAGACCAAGCCCGAGTTTGACCA...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GCAGATGAAGGCTGCAGGGAAGGCGCAGACACCAGGACTATCTGGGGGTGGGGCGGCATGTTGTATTCCTaGTCTGGATCATTCTTGATG +
Preference number: 5 (lower is better)
Translates to: ADEGCREGADTRTIWGWGGMLYS*SGSFLM
Trigger: CATCAAGAATGATCCAGACAAGGAATACAACATGCC...GCCCCACCCCCAGATAGTCCTGGTGTCTGCGCCTTCCCTGCAGCCTTCATCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGGGCATGTTGTATTCCTaGTCTGGATCATTCTTGATG +
Preference number: 5 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPAGMLYS*SGSFLM
Trigger: CATCAAGAATGATCCAGACAAGGAATACAACATGCC...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CCTCACACTCTCAGCCTAAGCCACTCAACCACTGGTGCATGGCCCAGGCCGGCGGGGTCTAAAGGAATATaGTATGTGTCCCCAAGAACT +
Preference number: 5 (lower is better)
Translates to: PHTLSLSHSTTGAWPRPAGSKGI*YVSPRT
Trigger: AGTTCTTGGGGACACATACAATATTCCTTTAGACCC...CGCCGGCCTGGGCCATGCACCAGTGGTTGAGTGGCTTAGGCTGAGAGTGTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000021147.14
CDS-3UTR CAA 90 bp TCATGGGTGTGGCTCATGTCTGACCCAGCCCCTGGCAGGGTGTGTGTGCATGGTTCGTACACCTTGGACTaGCTTAGTAAGTTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: SWVWLMSDPAPGRVCVHGSYTLD*LSKFSC
Trigger: GCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGA...ACCATGCACACACACCCTGCCAGGGGCTGGGTCAGACATGAGCCACACCCATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGCTGTCCCCAGAGGGTGGCTCAGAATTCCTCCAAACACTTTCTGAAGCGCCTAATCATCTGCCGCTCTTaGTCCCGGAGCTTGACTCCA +
Preference number: 5 (lower is better)
Translates to: GCPQRVAQNSSKHFLKRLIICRS*SRSLTP
Trigger: TGGAGTCAAGCTCCGGGACAAAGAGCGGCAGATGAT...TAGGCGCTTCAGAAAGTGTTTGGAGGAATTCTGAGCCACCCTCTGGGGACAGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCTATTTCTCCGGGTTTTaGGTGAAGGGCACGCTGCCA +
Preference number: 5 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPYFSGF*VKGTLP
Trigger: TGGCAGCGTGCCCTTCACCAAAAACCCGGAGAAATA...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TGCTGGCCAGATGCACTCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTTATTTCTCCGGGTTTTaGGTGAAGGGCACGCTGCCA +
Preference number: 5 (lower is better)
Translates to: CWPDALHHGDPRRDRTYTYFSGF*VKGTLP
Trigger: TGGCAGCGTGCCCTTCACCAAAAACCCGGAGAAATA...AGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGAGTGCATCTGGCCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCATATTTCTCCGGGTTTTaGGTGAAGGGCACGCTGCCA +
Preference number: 5 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPYFSGF*VKGTLP
Trigger: TGGCAGCGTGCCCTTCACCAAAAACCCGGAGAAATA...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAATCTCTCCCTGGCCGCTaGATGGGCTTCTTGGTGGGC +
Preference number: 5 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGESLPGR*MGFLVG
Trigger: GCCCACCAAGAAGCCCATCAAGCGGCCAGGGAGAGA...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000106411.10
CDS-3UTR CAA 90 bp TGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGCTCTCCCCTCCCCGGATCCTCGTACACCTaGGACTTGCTTAGTAAGTTC +
Preference number: 5 (lower is better)
Translates to: CLRETCQLHSLTGGSPLPGSSYT*DLLSKF
Trigger: GAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCC...GGGGAGGGGAGAGCCTCCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS TCA 90 bp CCGTCCAGGGCATCCTGTATCAAGGAGTCAAAGGTTTTCTTCTGGTaGTGCTCAGGGATGATCTCCATCAGCAGCCGGTATTCACTCTGC +
Preference number: 5 (lower is better)
Translates to: PSRASCIKESKVFFW*CSGMISISSRYSLC
Trigger: GCAGAGTGAATACCGGCTGCTGATGGAGATCATCCCTGAGCATCACCAGAAGAAAACCTTTGACTCCTTGATACAGGATGCCCTGGACGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCTGCTCCTTCAGACCCTaGATGGAGCGGTCCAGCTGG +
Preference number: 5 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFCSFRP*MERSSW
Trigger: CCAGCTGGACCGCTCCATCAAGGGTCTGAAGGAGCA...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCTGTGTCCCCAAGAACTaGGGAGGCCAGCATGGCACC +
Preference number: 5 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFCVPKN*GGQHGT
Trigger: GGTGCCATGCTGGCCTCCCAAGTTCTTGGGGACACA...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000021147.14
CDS-3UTR CAA 90 bp TCCATCATGGAGACCCAAGGCGTGACAGGACCTACACTCTGGGTGACGCTGGTGCCATCATTGAACCCCTaGAAACGTTCCTTAATCATC +
Preference number: 5 (lower is better)
Translates to: SIMETQGVTGPTLWVTLVPSLNP*KRSLII
Trigger: GATGATTAAGGAACGTTTCAAGGGGTTCAATGATGG...CACCAGCGTCACCCAGAGTGTAGGTCCTGTCACGCCTTGGGTCTCCATGATGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CCA 90 bp TGTTGTGTAGGAAGATGGCGCTCAGCGCTGGATCCTCGTACACCTTaGACTTGCTTAGTAAGTTCAGCTGCAGGTTACCCAAGACTTTGC +
Preference number: 5 (lower is better)
Translates to: CCVGRWRSALDPRTP*TCLVSSAAGYPRLC
Trigger: GCAAAGTCTTGGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATCTTCCTACACAACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TTGAGCCCATTCACATCCATGGGTGAAGGGATGAAAGCAGACCAGGGTGAAGCCTCGTACACCTTGGACTaGCTTAGTAAGTTCAGCTGC +
Preference number: 5 (lower is better)
Translates to: LSPFTSMGEGMKADQGEASYTLD*LSKFSC
Trigger: GCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGA...GGCTTCACCCTGGTCTGCTTTCATCCCTTCACCCATGGATGTGAATGGGCTCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGAGGTTCTCTGTCTGCTaGTGCACAGGGATGATAGAG +
Preference number: 5 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRRFSVC*CTGMIE
Trigger: CTCTATCATCCCTGTGCACAAGCAGACAGAGAACCT...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGAGCAGCTTCACTTTGTaGAGTTCTGGGCTGTCTGGG +
Preference number: 5 (lower is better)
Translates to: GARISAFDHSVWKNILEQSSFTL*SSGLSG
Trigger: CCCAGACAGCCCAGAACTCAACAAAGTGAAGCTGCT...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCAACAGCAGCTTCACTTaGTTGAGTTCTGGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: SAFDHSVWKNILEQPRTANSSFT*LSSGLS
Trigger: AGACAGCCCAGAACTCAACAAAGTGAAGCTGCTGTT...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CAGGTCTCTGTTCCGAAGGACTTCACACTCACCCGGCTCGGAAGTGAGTTACCACCATCATTGAACCCCTaGAAACGTTCCTTAATCATC +
Preference number: 5 (lower is better)
Translates to: QVSVPKDFTLTRLGSELPPSLNP*KRSLII
Trigger: GATGATTAAGGAACGTTTCAAGGGGTTCAATGATGG...TGGTAACTCACTTCCGAGCCGGGTGAGTGTGAAGTCCTTCGGAACAGAGACCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GGAGCAAGAATTTCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGAAGTCTTCTAGAGCTTaGGCCCCAATGGTCTCCATG +
Preference number: 5 (lower is better)
Translates to: GARISAFDHSVWKNILEQKSSRA*APMVSM
Trigger: CATGGAGACCATTGGGGCCAAAGCTCTAGAAGACTT...CTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGAAATTCTTGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GTGAGGGTTACAACAGTGTCTCAGAGAGACATGTCAGCTCCACTCTCTAACAGGGGATCCTCGTACACCTaGGACTTGCTTAGTAAGTTC +
Preference number: 5 (lower is better)
Translates to: VRVTTVSQRDMSAPLSNRGSSYT*DLLSKF
Trigger: GAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCC...CCTGTTAGAGAGTGGAGCTGACATGTCTCTCTGAGACACTGTTGTAACCCTCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAAAACAGCAGCTTCACTTaGTTGAGTTCTGGGCTGTCT +
Preference number: 5 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGENSSFT*LSSGLS
Trigger: AGACAGCCCAGAACTCAACAAAGTGAAGCTGCTGTT...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp TCTGCCTTTGACCACTCTGTCTGGAAGAACATTCTGGAGCAGCCAAGAACAGCCGGCATGTTGTATTCCTaGTCTGGATCATTCTTGATG +
Preference number: 5 (lower is better)
Translates to: SAFDHSVWKNILEQPRTAGMLYS*SGSFLM
Trigger: CATCAAGAATGATCCAGACAAGGAATACAACATGCC...GGCTGTTCTTGGCTGCTCCAGAATGTTCTTCCAGACAGAGTGGTCAAAGGCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp CTTTCCTTTAGGTCTGTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCGGATCCTCGTACACCTaGGACTTGCTTAGTAAGTTC +
Preference number: 5 (lower is better)
Translates to: LSFRSVGCDVAYFSLSPFGSSYT*DLLSKF
Trigger: GAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCC...GAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAACAGACCTAAAGGAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS-3UTR CAA 90 bp GTTGGCTGTGATGTGGCCTATTTCTCTTTGAGCCCATTCACATCCATGGGTGAACCATCATTGAACCCCTaGAAACGTTCCTTAATCATC +
Preference number: 5 (lower is better)
Translates to: VGCDVAYFSLSPFTSMGEPSLNP*KRSLII
Trigger: GATGATTAAGGAACGTTTCAAGGGGTTCAATGATGG...TTCACCCATGGATGTGAATGGGCTCAAAGAGAAATAGGCCACATCACAGCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS GCA 72 bp ATGCGGACCACGTCTCTGAGCACGCTCTCGGGCAGGTaGTCCAGGACCACGTCCTCCTGCACCTCCAGCTCG +
Preference number: 6 (lower is better)
Translates to: MRTTSLSTLSGR*SRTTSSCTSSS
Trigger: CGAGCTGGAGGTGCAGGAGGACGTGGTCCTGGAGCACCTGCCCGAGAGCGTGCTCAGAGACGTGGTCCGCAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
ENSMUST00000126731.8
CDS GCA 72 bp CGGGGGAGACCACCTTGCTGTGCCGGGTCATCAGACTaGGGAACTCCGACTCCAGGGACTCCTTCCCTCGCT +
Preference number: 6 (lower is better)
Translates to: RGRPPCCAGSSD*GTPTPGTPSLA
Trigger: AGCGAGGGAAGGAGTCCCTGGAGTCGGAGTTCCGCAGTCTGATGACCCGGCACAGCAAGGTGGTCTCCCCCG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
ENSMUST00000126731.8
CDS CAA 72 bp CCAATGGTCTCCATGGAGGTGATGAGGCCGGGCAGCTaGTTCTTGGTGCTGGCTGCTGTGCCCTGGAGCACC +
Preference number: 6 (lower is better)
Translates to: PMVSMEVMRPGS*FLVLAAVPWST
Trigger: GGTGCTCCAGGGCACAGCAGCCAGCACCAAGAACAAGCTGCCCGGCCTCATCACCTCCATGGAGACCATTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 72 bp GCCTTACGGATCGTCCCTGGCCGCTTGATGGGCTTCTaGGTGGGCGTGTCTTTCCTCTTATTGGGGATGGCG +
Preference number: 6 (lower is better)
Translates to: ALRIVPGRLMGF*VGVSFLLLGMA
Trigger: CGCCATCCCCAATAAGAGGAAAGACACGCCCACCAAGAAGCCCATCAAGCGGCCAGGGACGATCCGTAAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021147.14
ENSMUST00000106413.10
CDS TCA 72 bp AGACTTTGCAGATGTAGGTGCTCAGCAGCCGCTTGCTaGACTCGGAGCTGTAGCTGGTGGCCGAAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: RLCRCRCSAAAC*TRSCSWWPKSW
Trigger: CCAGCTCTTCGGCCACCAGCTACAGCTCCGAGTTCAGCAAGCGGCTGCTGAGCACCTACATCTGCAAAGTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 72 bp AGCATGTCGTCTCTCCCTGGCCGCTTGATGGGCTTCTaGGTGGGCGTGTCTTTCCTCTTATTGGGGATGGCG +
Preference number: 6 (lower is better)
Translates to: SMSSLPGRLMGF*VGVSFLLLGMA
Trigger: CGCCATCCCCAATAAGAGGAAAGACACGCCCACCAAGAAGCCCATCAAGCGGCCAGGGAGAGACGACATGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000106411.10
CDS CCA 72 bp GATAAACGACAGCGTCTCCTCCTCCTGAGGCATACGTaGGTCTTTCCTCGTAGCCAGAGGCTGGTTTGCTCG +
Preference number: 6 (lower is better)
Translates to: DKRQRLLLLRHT*VFPRSQRLVCS
Trigger: CGAGCAAACCAGCCTCTGGCTACGAGGAAAGACCCACGTATGCCTCAGGAGGAGGAGACGCTGTCGTTTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000124281.2
CDS TCA 72 bp TTTCCTCGTAGCCAGAGGCTGGTTTGCTCGCTCCTTTaGAAGACAGCCCCTTGCTGGGAGACTGAAGCAGGA +
Preference number: 6 (lower is better)
Translates to: FPRSQRLVCSLL*KTAPCWETEAG
Trigger: TCCTGCTTCAGTCTCCCAGCAAGGGGCTGTCTTTCAAAGGAGCGAGCAAACCAGCCTCTGGCTACGAGGAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000124281.2
CDS CCA 72 bp GGAAGATGGCGCTCAGCGCTGGATCCTCGTACACCTTaGACTTGCTTAGTAAGTTCAGCTGCAGGTTACCCA +
Preference number: 6 (lower is better)
Translates to: GRWRSALDPRTP*TCLVSSAAGYP
Trigger: TGGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATCTTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 72 bp AGGAAGATGGCGCTCAGCGCTGGATCCTCGTACACCTaGGACTTGCTTAGTAAGTTCAGCTGCAGGTTACCC +
Preference number: 6 (lower is better)
Translates to: RKMALSAGSSYT*DLLSKFSCRLP
Trigger: GGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATCTTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 72 bp GCCGAAGAGCTGGTTTCTCGGGGGTCTAAAGGAATATaGTATGTGTCCCCAAGAACTTGGGAGGCCAGCATG +
Preference number: 6 (lower is better)
Translates to: AEELVSRGSKGI*YVSPRTWEASM
Trigger: CATGCTGGCCTCCCAAGTTCTTGGGGACACATACAATATTCCTTTAGACCCCCGAGAAACCAGCTCTTCGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000021147.14
CDS CAA 72 bp ATGGCGCTCAGCGCTGGATCCTCGTACACCTTGGACTaGCTTAGTAAGTTCAGCTGCAGGTTACCCAAGACT +
Preference number: 6 (lower is better)
Translates to: MALSAGSSYTLD*LSKFSCRLPKT
Trigger: AGTCTTGGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 72 bp AACCCCTTGAAACGTTCCTTAATCATCTGCCGCTCTTaGTCCCGGAGCTTGACTCCAGGCTGGAACACAGGT +
Preference number: 6 (lower is better)
Translates to: NPLKRSLIICRS*SRSLTPGWNTG
Trigger: ACCTGTGTTCCAGCCTGGAGTCAAGCTCCGGGACAAAGAGCGGCAGATGATTAAGGAACGTTTCAAGGGGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 90 bp TGTAGGAAGATGGCGCTCAGCGCTGGATCCTCGTACACCTTGGACTaGCTTAGTAAGTTCAGCTGCAGGTTACCCAAGACTTTGCAGATG +
Preference number: 6 (lower is better)
Translates to: CRKMALSAGSSYTLD*LSKFSCRLPKTLQM
Trigger: CATCTGCAAAGTCTTGGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATCTTCCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 72 bp TGCTCCACGCGGTACTTAATGTATTTCTCCGGGTTTTaGGTGAAGGGCACGCTGCCATACCTGTGCAGAAAG +
Preference number: 6 (lower is better)
Translates to: CSTRYLMYFSGF*VKGTLPYLCRK
Trigger: CTTTCTGCACAGGTATGGCAGCGTGCCCTTCACCAAAAACCCGGAGAAATACATTAAGTACCGCGTGGAGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS CAA 90 bp TTGTTGTGTAGGAAGATGGCGCTCAGCGCTGGATCCTCGTACACCTaGGACTTGCTTAGTAAGTTCAGCTGCAGGTTACCCAAGACTTTG +
Preference number: 6 (lower is better)
Translates to: LLCRKMALSAGSSYT*DLLSKFSCRLPKTL
Trigger: CAAAGTCTTGGGTAACCTGCAGCTGAACTTACTAAGCAAGTCCAAGGTGTACGAGGATCCAGCGCTGAGCGCCATCTTCCTACACAACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10
CDS TCA 72 bp GCATCCTGTATCAAGGAGTCAAAGGTTTTCTTCTGGTaGTGCTCAGGGATGATCTCCATCAGCAGCCGGTAT +
Preference number: 6 (lower is better)
Translates to: ASCIKESKVFFW*CSGMISISSRY
Trigger: ATACCGGCTGCTGATGGAGATCATCCCTGAGCATCACCAGAAGAAAACCTTTGACTCCTTGATACAGGATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000021147.14
ENSMUST00000106411.10
ENSMUST00000106413.10