RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EXOC6 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000053799

Ensembl transcript IDs: ENSMUST00000066439.8, ENSMUST00000238817.2, ENSMUST00000238954.2

Found 232 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAACTTTCAAGATCTCTGTGCTTCCTCTCTCAGACCCTGCAGAACTaGTACTCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTA +
Preference number: 1 (lower is better)
Translates to: ELSRSLCFLSQTLQN*YSWAIHVSHTEVKL
Trigger: TAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGAGTATCAGTTCTGCAGGGTCTGAGAGAGGAAGCACAGAGATCTTGAAAGTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR TCA 90 bp TCTTACAAGCATAAATCCGGAATATGCAAAGGGTGTACTTCAGCATaGTTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTG +
Preference number: 1 (lower is better)
Translates to: SYKHKSGICKGCTSA*LQCRENRGQVYTFV
Trigger: CACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATCATGCTGAAGTACACCCTTTGCATATTCCGGATTTATGCTTGTAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR GCA 90 bp TCTAACAGGGACAGGCTACACCTGACAGATCAGCCCCTTTCACTGCCGCCTTCTCTTTCAAGATCTCTGTaGTTCCTCTCTCAGACCCTG +
Preference number: 2 (lower is better)
Translates to: SNRDRLHLTDQPLSLPPSLSRSL*FLSQTL
Trigger: CAGGGTCTGAGAGAGGAAGCACAGAGATCTTGAAAG...AGAAGGCGGCAGTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCCTGTTAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR GCA 90 bp AACAGGGACAGGCTACACCTGACAGATCAGCCCCTTTCACTGCCGCCTTCTCTTCTTATCAGCAGTGGCTaGATCCCAAACTATAACCCA +
Preference number: 2 (lower is better)
Translates to: NRDRLHLTDQPLSLPPSLLISSG*IPNYNP
Trigger: TGGGTTATAGTTTGGGATGCAGCCACTGCTGATAAG...AAGAGAAGGCGGCAGTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCCTGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR TCA 90 bp CAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACGGGACAGGCTACACCTaGCAGATCAGCCCCTTTCAC +
Preference number: 2 (lower is better)
Translates to: QLIQFVSTALRSSLNSVDGTGYT*QISPFH
Trigger: GTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCC...GTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR CAA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATaGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGG +
Preference number: 2 (lower is better)
Translates to: SVFPLLQFLASVNKL*SHDQCWPQRSTQAW
Trigger: CCATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR CAA 90 bp CCCAAAGGAAAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTaGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGC +
Preference number: 2 (lower is better)
Translates to: PKGKCTRAGWVFRVQ*IQFVSTALRSSLNS
Trigger: GCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCCTTTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR TCA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCACAGACCCTGCAGAACTaGTACTCCTGGGCCATCCAT +
Preference number: 2 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPQTLQN*YSWAIH
Trigger: ATGGATGGCCCAGGAGTATCAGTTCTGCAGGGTCTG...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR TCA 90 bp ACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTAATAATTTACTGTCCTaGAGACCTGAGCCTGACTTC +
Preference number: 2 (lower is better)
Translates to: TCWVGFQSPVDPVCFHSTNNLLS*RPEPDF
Trigger: GAAGTCAGGCTCAGGTCTTCAGGACAGTAAATTATT...AGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR GCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTTTGTCTCACGACCAGTaGTGGCCACAGAGAAGCACT +
Preference number: 2 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCLSHDQ*WPQRST
Trigger: AGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAA...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR-3UTR GCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCTTGTCTCACGACCAGTaGTGGCCACAGAGAAGCACT +
Preference number: 2 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFLSHDQ*WPQRST
Trigger: AGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAA...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR-3UTR CCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTTCTCACGACCAGTGCTaGCCACAGAGAAGCACTCAG +
Preference number: 2 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVSHDQC*PQRSTQ
Trigger: CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGA...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR-3UTR CCA 90 bp AGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAAACTATATCTCACGACCAGTGCTaGCCACAGAGAAGCACTCAG +
Preference number: 2 (lower is better)
Translates to: SLITAVFSLSAVAASQTISHDQC*PQRSTQ
Trigger: CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGA...TATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR CAA 90 bp CAGCATGATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTaGTGTCACTGTGATTTACCCAAAGGAAAATGTACACGTGCTGGG +
Preference number: 2 (lower is better)
Translates to: QHDYNVEKTEVRFTH*CHCDLPKGKCTRAG
Trigger: CCCAGCACGTGTACATTTTCCTTTGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATCATGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR GCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACCATACAAATGATGTTTaGCGCCATTGCTTGTTTAAG +
Preference number: 2 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHHTNDV*RHCLFK
Trigger: CTTAAACAAGCAATGGCGGCAAACATCATTTGTATG...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR GCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATCATACAAATGATGTTTaGCGCCATTGCTTGTTTAAG +
Preference number: 2 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDHTNDV*RHCLFK
Trigger: CTTAAACAAGCAATGGCGGCAAACATCATTTGTATG...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR TCA 72 bp AGATCTCTGTGCTTCCTCTCTCAGACCCTGCAGAACTaGTACTCCTGGGCCATCCATGTAAGCCACACTGAG +
Preference number: 3 (lower is better)
Translates to: RSLCFLSQTLQN*YSWAIHVSHTE
Trigger: CTCAGTGTGGCTTACATGGATGGCCCAGGAGTATCAGTTCTGCAGGGTCTGAGAGAGGAAGCACAGAGATCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR TCA 72 bp GTAGGAAGAACATGTCTAACAGGGACAGGCTACACCTaGCAGATCAGCCCCTTTCACTGCCGCCTTCTCTTT +
Preference number: 3 (lower is better)
Translates to: VGRTCLTGTGYT*QISPFHCRLLF
Trigger: AAAGAGAAGGCGGCAGTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR GCA 72 bp TTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTaGTGGCCACAGAGAAGCACTCAGGCATGGGTCTGG +
Preference number: 3 (lower is better)
Translates to: LASVNKLLSHDQ*WPQRSTQAWVW
Trigger: CCAGACCCATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR CCA 72 bp TGTGATTTACCCAAAGGAAAATGTACACGTGCTGGGTaGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCC +
Preference number: 3 (lower is better)
Translates to: CDLPKGKCTRAG*VFRVQLIQFVS
Trigger: GGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCCTTTGGGTAAATCACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR TCA 72 bp GAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTaGTTTACCCAAAGGAAAATGTACACGTGCTGGGTG +
Preference number: 3 (lower is better)
Translates to: ENRGQVYTFVSL*FTQRKMYTCWV
Trigger: CACCCAGCACGTGTACATTTTCCTTTGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR-3UTR CAA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCAGTTTTCAGAGTCCAGTaGATCCAGTTTGTTTCCACA +
Preference number: 3 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPVFRVQ*IQFVST
Trigger: TGTGGAAACAAACTGGATCAACTGGACTCTGAAAAC...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR GCA 72 bp TCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTaGATCCCAAACTATAACCCACACAAACAGAAACTC +
Preference number: 3 (lower is better)
Translates to: SNNSSIFLISSG*IPNYNPHKQKL
Trigger: GAGTTTCTGTTTGTGTGGGTTATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR TCA 72 bp TTAAGCTATCTAAGTAGAACAAATAATTTACTGTCCTaGAGACCTGAGCCTGACTTCAGGAACTTTCAAGAT +
Preference number: 3 (lower is better)
Translates to: LSYLSRTNNLLS*RPEPDFRNFQD
Trigger: ATCTTGAAAGTTCCTGAAGTCAGGCTCAGGTCTTCAGGACAGTAAATTATTTGTTCTACTTAGATAGCTTAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AACAGGGACAGGCTACACCTGACAGATCAGCCCCTTTCACTGCCGCCTTCTCTTTCTGCAGAGCAACACTaGAGCTCTTCTGCTGTTGTG +
Preference number: 4 (lower is better)
Translates to: NRDRLHLTDQPLSLPPSLSAEQH*SSSAVV
Trigger: CACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGA...AAGAGAAGGCGGCAGTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCCTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACACGTGCTCCGGGACCGTaGCCAGAGCCTCGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITRAPGP*PEPRSS
Trigger: AGAGCTGCGAGGCTCTGGGCACGGTCCCGGAGCACG...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066439.8
CDS-3UTR CCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAGTCCCCTTGGAATCCTaGCACAGGCTCAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLVPLES*HRLRAG
Trigger: GCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGAC...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGACTTGCTCTCCCATCTaGCTCAGCCATGGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMTCSPI*LSHGPV
Trigger: GACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGT...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AACAGGGACAGGCTACACCTGACAGATCAGCCCCTTTCACTGCCGCCTTCTCTTTCTGCATTAAGGATGTaGACAGATGTTGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: NRDRLHLTDQPLSLPPSLSALRM*TDVGRL
Trigger: CAGCCTGCCAACATCTGTCCACATCCTTAATGCAGA...AAGAGAAGGCGGCAGTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCCTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACGTCCCCTTGGAATCCTaGCACAGGCTCAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHVPLES*HRLRAG
Trigger: GCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGAC...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTATGCAGGGTGTCCCCTTaGAATCCTGGCACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLCRVSP*NPGTGS
Trigger: TGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCA...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GGAAAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTAGAAGCGGTACTGGCTaGCCCGGGGAAAGTACACAT +
Preference number: 4 (lower is better)
Translates to: GKCTRAGWVFRVQLIQFVRSGTG*PGESTH
Trigger: ATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCT...AACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGTCAGTGCAGTAAGATaGGTGAGCTCTGAGGACAGC +
Preference number: 4 (lower is better)
Translates to: SVNKLLSHDQCWPQRSTQVSAVR*VSSEDS
Trigger: GCTGTCCTCAGAGCTCACTCATCTTACTGCACTGAC...CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACACTTGCTCTCCCATCTaGCTCAGCCATGGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHTCSPI*LSHGPV
Trigger: GACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGT...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCCGTGCTCCGGGACCGTaGCCAGAGCCTCGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVRAPGP*PEPRSS
Trigger: AGAGCTGCGAGGCTCTGGGCACGGTCCCGGAGCACG...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
CDS-3UTR GCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTTGCAAGATCCGCTCGTaGTCCGGGACCGTGCCCAGA +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVCKIRS*SGTVPR
Trigger: TCTGGGCACGGTCCCGGAGCACGAGCGGATCTTGCA...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
CDS-3UTR GCA 90 bp GTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGCGCAGGCGGTGTCGGTaGTTTCGATCTCCTGCAAGA +
Preference number: 4 (lower is better)
Translates to: VFRVQLIQFVSTALRSSLRRRCR*FRSPAR
Trigger: TCTTGCAGGAGATCGAAAGCACCGACACCGCCTGCG...CAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066439.8
CDS-3UTR GCA 90 bp TCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGACATCGAGGTTAAACTaGTGCACGGCTCCCATGCTG +
Preference number: 4 (lower is better)
Translates to: SVNKLLSHDQCWPQRSTQTSRLN*CTAPML
Trigger: CAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGT...CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCGTCCCCTTGGAATCCTaGCACAGGCTCAGAGCTGGC +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFVPLES*HRLRAG
Trigger: GCCAGCTCTGAGCCTGTGCCAGGATTCCAAGGGGAC...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TCTAACAGGGACAGGCTACACCTGACAGATCAGCCCCTTTCACTGCCGCCTTCTCTGCAAAAATTACGATaGGATTCTTCAGCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: SNRDRLHLTDQPLSLPPSLQKLR*DSSAPE
Trigger: TTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAG...AGAAGGCGGCAGTGAAAGGGGCTGATCTGTCAGGTGTAGCCTGTCCCTGTTAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACACAGATGTTGGCAGGCTaGCATGCAAGCTGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITQMLAG*HASCLG
Trigger: GCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTG...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTGCAAGATCCGCTCGTaGTCCGGGACCGTGCCCAGA +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDCKIRS*SGTVPR
Trigger: TCTGGGCACGGTCCCGGAGCACGAGCGGATCTTGCA...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000066439.8
CDS-3UTR GCA 90 bp TCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGTTCTGCTGTTGTGCCTaGTTCATGGCTGCTTCACCT +
Preference number: 4 (lower is better)
Translates to: SVNKLLSHDQCWPQRSTQFCCCA*FMAASP
Trigger: AGGTGAAGCAGCCATGAAGCAGGCACAACAGCAGAA...CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTATTCTGCTGTTGTGCCTaGTTCATGGCTGCTTCACCT +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLFCCCA*FMAASP
Trigger: AGGTGAAGCAGCCATGAAGCAGGCACAACAGCAGAA...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTACAAGGTCAGGGTCAGTaGAGTAAGATGAGTGAGCTC +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLQGQGQ*SKMSEL
Trigger: GAGCTCACTCATCTTACTGCACTGACCCTGACCTTG...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACACATCGAGGTTAAACTaGTGCACGGCTCCCATGCTG +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHTSRLN*CTAPML
Trigger: CAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGT...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGCCTCAGTGTAGACCCTaGTTACTAATCCTTGGGTCA +
Preference number: 4 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMPQCRP*LLILGS
Trigger: TGACCCAAGGATTAGTAACCAGGGTCTACACTGAGG...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGTCTGCATTAAGGATGTaGACAGATGTTGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMSALRM*TDVGRL
Trigger: CAGCCTGCCAACATCTGTCCACATCCTTAATGCAGA...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGCAGGGTGTCCCCTTaGAATCCTGGCACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCCRVSP*NPGTGS
Trigger: TGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCA...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp TTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCTGTCACTCGGAGGTACTTaGAAGCCGGCTGCCCATAGT +
Preference number: 4 (lower is better)
Translates to: LIQFVSTALRSSLNSVDLSLGGT*KPAAHS
Trigger: ACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGA...CAGGTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp ACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTTCTTTTCCTGCATCTTaGAACCTTCGGTTGGTATCG +
Preference number: 4 (lower is better)
Translates to: TCWVGFQSPVDPVCFHSTSFPAS*NLRLVS
Trigger: CGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGA...AGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGCAGCAGCAGATTGGTTaGTTTCCTAAGCATGTCATC +
Preference number: 4 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMQQQIG*FPKHVI
Trigger: GATGACATGCTTAGGAAATCAACCAATCTGCTGCTG...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCTGGCACGGCTCCCATGCTaGTCTGCTTTAACTCACTGT +
Preference number: 4 (lower is better)
Translates to: LIQFVSTALRSSLNSVDLARLPC*SALTHC
Trigger: ACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGC...CAGGTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCAGAACCAGGCGTGCCTaGTTCTTCCTTTGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFRTRRA*FFLCFR
Trigger: CCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCT...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp ACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTAGTCCTCTAGGTATTTaGAAGCTTGTTCCAGGTGTG +
Preference number: 4 (lower is better)
Translates to: TCWVGFQSPVDPVCFHSTSPLGI*KLVPGV
Trigger: CACACCTGGAACAAGCTTGCAAATACCTAGAGGACT...AGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACATCACTCGGAGGTACTTaGAAGCCGGCTGCCCATAGT +
Preference number: 4 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITSLGGT*KPAAHS
Trigger: ACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGA...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTCACTCGGAGGTACTTaGAAGCCGGCTGCCCATAGT +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCSLGGT*KPAAHS
Trigger: ACTATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGA...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGTCCACAAAGCCCTGGTaGTGGAAGTTACACATTTTT +
Preference number: 4 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMSTKPW*WKLHIF
Trigger: AAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGA...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAAGAAGCGGTACTGGCTaGCCCGGGGAAAGTACACAT +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLRSGTG*PGESTH
Trigger: ATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCT...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCGTCAGTGCAGTAAGATaGGTGAGCTCTGAGGACAGC +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFVSAVR*VSSEDS
Trigger: GCTGTCCTCAGAGCTCACTCATCTTACTGCACTGAC...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTGTCAGTGCAGTAAGATaGGTGAGCTCTGAGGACAGC +
Preference number: 4 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCVSAVR*VSSEDS
Trigger: GCTGTCCTCAGAGCTCACTCATCTTACTGCACTGAC...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTACAGCAGCAGATTGGTTaGTTTCCTAAGCATGTCATC +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLQQQIG*FPKHVI
Trigger: GATGACATGCTTAGGAAATCAACCAATCTGCTGCTG...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGATGTTGGCAGGCTaGCATGCAAGCTGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDQMLAG*HASCLG
Trigger: GCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATCAGATGTTGGCAGGCTaGCATGCAAGCTGTCTGGGC +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDQMLAG*HASCLG
Trigger: GCCCAGACAGCTTGCATGTCAGCCTGCCAACATCTG...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTACAGTCACCAAGCCTCTaGGCTGTCTCACCACTGTCT +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLQSPSL*AVSPLS
Trigger: AGACAGTGGTGAGACAGCTCAGAGGCTTGGTGACTG...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTGCTCTTCTGCTGTTGTaGCTGCTTCATGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCALLLL*LLHGCF
Trigger: GAAGCAGCCATGAAGCAGGCACAACAGCAGAAGAGC...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCAAGAACCAGGCGTGCCTaGTTCTTCCTTTGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPRTRRA*FFLCFR
Trigger: CCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCT...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCTCGAGGTTAAACTGCTaGACGGCTCCCATGCTGATC +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFSRLNC*TAPMLI
Trigger: GATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGA...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACCATCTGACTCAGCCATaGTCCAGTCATAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHHLTQP*SSHNQP
Trigger: TGGCTGATTATGACTGGACCATGGCTGAGTCAGATG...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACGACATGCAAGCTGTCTaGGCAACTTTCCCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: QLIQFVSTALRSSLNSVDDMQAV*ATFPGK
Trigger: TTTGCCTGGGAAAGTTGCCCAGACAGCTTGCATGTC...GTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGGATGTGGACAGATGTTaGCAGGCTGACATGCAAGCT +
Preference number: 4 (lower is better)
Translates to: VFRVQLIQFVSTALRSSLDVDRC*QADMQA
Trigger: AGCTTGCATGTCAGCCTGCCAACATCTGTCCACATC...CAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTGCAGGGTGTCCCCTTaGAATCCTGGCACAGGCTCA +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDCRVSP*NPGTGS
Trigger: TGAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCA...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACGGTTCCGCACACCCCTaGCTTCCCAGCTGTAGACAT +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDGSAHP*LPSCRH
Trigger: ATGTCTACAGCTGGGAAGCCAGGGGTGTGCGGAACC...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCTGTTGTGTGCGTTTGGCTaGTCATCATACACAGATCGG +
Preference number: 4 (lower is better)
Translates to: LIQFVSTALRSSLNSVDLLCAFG*SSYTDR
Trigger: CCGATCTGTGTATGATGATCAGCCAAACGCACACAA...CAGGTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000066439.8
CDS-3UTR TCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACTCTTTTCCTGCATCTTaGAACCTTCGGTTGGTATCG +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHSFPAS*NLRLVS
Trigger: CGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGA...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGGTCACGTGTAAAATGTaGTCTTCCACAACAAAGAAC +
Preference number: 4 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMVTCKM*SSTTKN
Trigger: GTTCTTTGTTGTGGAAGATCACATTTTACACGTGAC...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAAACTATAACTTGCTCTCCCATCTaGCTCAGCCATGGTCCAGTC +
Preference number: 4 (lower is better)
Translates to: SLITAVFSLSAVAASQTITCSPI*LSHGPV
Trigger: GACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGT...TATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAGCACGGCTCCCATGCTaGTCTGCTTTAACTCACTGT +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLARLPC*SALTHC
Trigger: ACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGC...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTCACCAAGCCTCTaGGCTGTCTCACCACTGTCT +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDQSPSL*AVSPLS
Trigger: AGACAGTGGTGAGACAGCTCAGAGGCTTGGTGACTG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATCAGTCACCAAGCCTCTaGGCTGTCTCACCACTGTCT +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDQSPSL*AVSPLS
Trigger: AGACAGTGGTGAGACAGCTCAGAGGCTTGGTGACTG...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCGGCAGCTCAAAAGACTaGATCTCCGCTAGGACATTC +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFGSSKD*ISARTF
Trigger: GAATGTCCTAGCGGAGATTCAGTCTTTTGAGCTGCC...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATATATTTCTCCTTCTaGCGCATGTCGAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLIYFSF*RMSSIL
Trigger: AAGGATGCTCGACATGCGGCAGAAGGAGAAATATAT...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGATATATTTCTCCTTCTaGCGCATGTCGAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: SVNKLLSHDQCWPQRSTQIYFSF*RMSSIL
Trigger: AAGGATGCTCGACATGCGGCAGAAGGAGAAATATAT...CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCATCGAGGTTAAACTGCTaGACGGCTCCCATGCTGATC +
Preference number: 4 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPSRLNC*TAPMLI
Trigger: GATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGA...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTACATCGAGGTTAAACTaGTGCACGGCTCCCATGCTG +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVTSRLN*CTAPML
Trigger: CAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGT...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACGTTGTGCCTGCTTCATaGCTGCTTCACCTATTTTGT +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHVVPAS*LLHLFC
Trigger: ACAAAATAGGTGAAGCAGCCATGAAGCAGGCACAAC...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCCTCAGTGTAGACCCTaGTTACTAATCCTTGGGTCA +
Preference number: 4 (lower is better)
Translates to: QLIQFVSTALRSSLNSVDPQCRP*LLILGS
Trigger: TGACCCAAGGATTAGTAACCAGGGTCTACACTGAGG...GTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCATCTGACTCAGCCATaGTCCAGTCATAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: QLIQFVSTALRSSLNSVDHLTQP*SSHNQP
Trigger: TGGCTGATTATGACTGGACCATGGCTGAGTCAGATG...GTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCGACATGCAAGCTGTCTaGGCAACTTTCCCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFDMQAV*ATFPGK
Trigger: TTTGCCTGGGAAAGTTGCCCAGACAGCTTGCATGTC...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCAGCACAGGCTCAGAGCTaGCAAACAGTTCGCACTGTA +
Preference number: 4 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPAQAQS*QTVRTV
Trigger: TACAGTGCGAACTGTTTGCCAGCTCTGAGCCTGTGC...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR CAA 72 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATaGTCTCACGACCAGTGCTGGCCACAGAGAAGCACT +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKL*SHDQCWPQRST
Trigger: AGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR CAA 72 bp AAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTaGATCCAGTTTGTTTCCACAGCACTGAGATCTTCT +
Preference number: 4 (lower is better)
Translates to: KCTRAGWVFRVQ*IQFVSTALRSS
Trigger: AGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTTTGTGTGCGTTTGGCTaGTCATCATACACAGATCGG +
Preference number: 4 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCLCAFG*SSYTDR
Trigger: CCGATCTGTGTATGATGATCAGCCAAACGCACACAA...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
CDS-3UTR TCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTTCTGCAGAGCAACACTaGAGCTCTTCTGCTGTTGTG +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVSAEQH*SSSAVV
Trigger: CACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGA...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GGAAAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTCTTCAAAAATGTCCCTaGAAATACCAGCCCACTTCT +
Preference number: 4 (lower is better)
Translates to: GKCTRAGWVFRVQLIQFVLQKCP*KYQPTS
Trigger: AGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAG...AACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCTGCAGCAGCAGATTGGTTaGTTTCCTAAGCATGTCATC +
Preference number: 4 (lower is better)
Translates to: LIQFVSTALRSSLNSVDLQQQIG*FPKHVI
Trigger: GATGACATGCTTAGGAAATCAACCAATCTGCTGCTG...CAGGTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAAACTATAGCACGGCTCCCATGCTaGTCTGCTTTAACTCACTGT +
Preference number: 4 (lower is better)
Translates to: SLITAVFSLSAVAASQTIARLPC*SALTHC
Trigger: ACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGC...TATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GGAAAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTTTTCCTTGTCATGATTaGGGATACAAGCGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: GKCTRAGWVFRVQLIQFVFPCHD*GYKRLA
Trigger: AGCTAGACGCTTGTATCCGCAATCATGACAAGGAAA...AACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATGCTCTTCTGCTGTTGTaGCTGCTTCATGGCTGCTTC +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDALLLL*LLHGCF
Trigger: GAAGCAGCCATGAAGCAGGCACAACAGCAGAAGAGC...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp ACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTATATTATTTTGCTTCTaGAGAGCAACACTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: TCWVGFQSPVDPVCFHSTILFCF*RATLKL
Trigger: GAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATAT...AGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACAGAACCAGGCGTGCCTaGTTCTTCCTTTGCTTCCGG +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHRTRRA*FFLCFR
Trigger: CCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCT...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTACAAGGTCAGGGTCAGTaGAGTAAGATGAGTGAGCTC +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLQGQGQ*SKMSEL
Trigger: GAGCTCACTCATCTTACTGCACTGACCCTGACCTTG...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGCAAGGTCAGGGTCAGTaGAGTAAGATGAGTGAGCTC +
Preference number: 4 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLQGQGQ*SKMSEL
Trigger: GAGCTCACTCATCTTACTGCACTGACCCTGACCTTG...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACAGCTCCCATGCTGATCTaGTTTAACTCACTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITAPMLI*FNSLSS
Trigger: ACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGC...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTCGAGGTTAAACTGCTaGACGGCTCCCATGCTGATC +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDSRLNC*TAPMLI
Trigger: GATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGA...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCAGATGTGGACAGATGTTaGCAGGCTGACATGCAAGCT +
Preference number: 4 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPDVDRC*QADMQA
Trigger: AGCTTGCATGTCAGCCTGCCAACATCTGTCCACATC...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACGCACAGGCTCAGAGCTaGCAAACAGTTCGCACTGTA +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDAQAQS*QTVRTV
Trigger: TACAGTGCGAACTGTTTGCCAGCTCTGAGCCTGTGC...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATGCACAGGCTCAGAGCTaGCAAACAGTTCGCACTGTA +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDAQAQS*QTVRTV
Trigger: TACAGTGCGAACTGTTTGCCAGCTCTGAGCCTGTGC...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACTTTCCAGAAAGTCCTTaGGATCAGACATGGAGATGT +
Preference number: 4 (lower is better)
Translates to: QLIQFVSTALRSSLNSVDFPESP*DQTWRC
Trigger: ACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAA...GTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACTCTGCAGAGCAACACTaGAGCTCTTCTGCTGTTGTG +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDSAEQH*SSSAVV
Trigger: CACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGA...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACCTGCAAAAATTACGATaGGATTCTTCAGCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHLQKLR*DSSAPE
Trigger: TTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAG...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCCTGGGCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAAGTAATACCTTTTCATaGTCATCTGTTCCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: SWAIHVSHTEVKLEAKSLSNTFS*SSVPSA
Trigger: AGCTGAAGGAACAGATGAGCATGAAAAGGTATTACT...TAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGCCCAGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGCCTGCTTCATGGCTaGTTCACCTATTTTGTCAGA +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCCLLHG*FTYFVR
Trigger: TCTGACAAAATAGGTGAAGCAGCCATGAAGCAGGCA...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACTTCTGCTGTTGTGCCTaGTTCATGGCTGCTTCACCT +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDFCCCA*FMAASP
Trigger: AGGTGAAGCAGCCATGAAGCAGGCACAACAGCAGAA...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCCTGTCCAGTAGCATCTaGATTAAGGATGTGGACAGA +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCLSSSI*IKDVDR
Trigger: TCTGTCCACATCCTTAATGCAGATGCTACTGGACAG...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACACTGTCCAGTAGCATCTaGATTAAGGATGTGGACAGA +
Preference number: 4 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITLSSSI*IKDVDR
Trigger: TCTGTCCACATCCTTAATGCAGATGCTACTGGACAG...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAGCTCCCATGCTGATCTaGTTTAACTCACTGTCCAGT +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLAPMLI*FNSLSS
Trigger: ACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGC...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACAGTTGTGCCTGCTTCATaGCTGCTTCACCTATTTTGT +
Preference number: 4 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITVVPAS*LLHLFC
Trigger: ACAAAATAGGTGAAGCAGCCATGAAGCAGGCACAAC...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATGACATGCAAGCTGTCTaGGCAACTTTCCCAGGCAAA +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDDMQAV*ATFPGK
Trigger: TTTGCCTGGGAAAGTTGCCCAGACAGCTTGCATGTC...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATCTGCATTAAGGATGTaGACAGATGTTGGCAGGCTG +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLSALRM*TDVGRL
Trigger: CAGCCTGCCAACATCTGTCCACATCCTTAATGCAGA...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTCAATTTCCTTGTCATaGTTGCGGATACAAGCGTCT +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCSISLS*LRIQAS
Trigger: AGACGCTTGTATCCGCAATCATGACAAGGAAATTGA...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTCCACAAAGCCCTGGTaGTGGAAGTTACACATTTTT +
Preference number: 4 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCSTKPW*WKLHIF
Trigger: AAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGA...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTTTTCCTTGTCATGATTaGGGATACAAGCGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCFPCHD*GYKRLA
Trigger: AGCTAGACGCTTGTATCCGCAATCATGACAAGGAAA...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCTTTCCTTGTCATGATTaGGGATACAAGCGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFFPCHD*GYKRLA
Trigger: AGCTAGACGCTTGTATCCGCAATCATGACAAGGAAA...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTTTGGTATCGGTAACCTaGACCTTCAGTTTTTCCGCA +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVLVSVT*TFSFSA
Trigger: TGCGGAAAAACTGAAGGTGCAGGTTACCGATACCAA...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGGTATCGGTAACCTaGACCTTCAGTTTTTCCGCA +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLLVSVT*TFSFSA
Trigger: TGCGGAAAAACTGAAGGTGCAGGTTACCGATACCAA...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTTGCCTGCTTCATGGCTaGTTCACCTATTTTGTCAGA +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVCLLHG*FTYFVR
Trigger: TCTGACAAAATAGGTGAAGCAGCCATGAAGCAGGCA...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAGTCCTCTAGGTATTTaGAAGCTTGTTCCAGGTGTG +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVSPLGI*KLVPGV
Trigger: CACACCTGGAACAAGCTTGCAAATACCTAGAGGACT...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGTTGTGCCTGCTTCATaGCTGCTTCACCTATTTTGT +
Preference number: 4 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLVVPAS*LLHLFC
Trigger: ACAAAATAGGTGAAGCAGCCATGAAGCAGGCACAAC...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCGATGTGGACAGATGTTaGCAGGCTGACATGCAAGCT +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVDVDRC*QADMQA
Trigger: AGCTTGCATGTCAGCCTGCCAACATCTGTCCACATC...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTTCAATTTCCTTGTCATaGTTGCGGATACAAGCGTCT +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVSISLS*LRIQAS
Trigger: AGACGCTTGTATCCGCAATCATGACAAGGAAATTGA...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGTTTCCAGAAAGTCCTTaGGATCAGACATGGAGATGT +
Preference number: 4 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLFPESP*DQTWRC
Trigger: ACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAA...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTGTCACGTGTAAAATGTaGTCTTCCACAACAAAGAAC +
Preference number: 4 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCVTCKM*SSTTKN
Trigger: GTTCTTTGTTGTGGAAGATCACATTTTACACGTGAC...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCCTGCAAAAATTACGATaGGATTCTTCAGCTCCAGAA +
Preference number: 4 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFLQKLR*DSSAPE
Trigger: TTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAG...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCTGAGTAATACCTTTTCATaGTCATCTGTTCCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: LIQFVSTALRSSLNSVDLSNTFS*SSVPSA
Trigger: AGCTGAAGGAACAGATGAGCATGAAAAGGTATTACT...CAGGTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTCCTATTTTGTCAGAATaGTTTCGGATGCTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCPILSE*FRMLSR
Trigger: TCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGG...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAAACTATATGCCTGCTTCATGGCTaGTTCACCTATTTTGTCAGA +
Preference number: 4 (lower is better)
Translates to: SLITAVFSLSAVAASQTICLLHG*FTYFVR
Trigger: TCTGACAAAATAGGTGAAGCAGCCATGAAGCAGGCA...TATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGTTCTTTGGGAAAGATTaGTTTTCGAGGTCTGGATCC +
Preference number: 4 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLFFGKD*FSRSGS
Trigger: GGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAA...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GGAAAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTATATGTTATTCTTCTTaGTGGTGTCCTTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: GKCTRAGWVFRVQLIQFVICYSS*WCPSSS
Trigger: AGAAGATGAAGGACACCAGCAAGAAGAATAACATAT...AACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp CAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGAATAGCGTTGACCATAGGAAACTTCTTTaGGAAAGATTGCTTTTCGAG +
Preference number: 4 (lower is better)
Translates to: QLIQFVSTALRSSLNSVDHRKLL*ERLLFE
Trigger: CTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATG...GTCAACGCTATTCAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTGTCCATAAAGTCTTGTaGTGTGAACGGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVVHKVL*CERFLE
Trigger: CTCAAGAAACCGTTCACACCACAAGACTTTATGGAC...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACCATCTGACTCAGCCATaGTCCAGTCATAATCAGCCA +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHHLTQP*SSHNQP
Trigger: TGGCTGATTATGACTGGACCATGGCTGAGTCAGATG...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGCTCTTCACACTTATTTTACAGAGTCAGGTCATCTTACAAGCATAAATCCGGATCAATTTCCTTGTCATaGTTGCGGATACAAGCGTCT +
Preference number: 4 (lower is better)
Translates to: SSSHLFYRVRSSYKHKSGSISLS*LRIQAS
Trigger: AGACGCTTGTATCCGCAATCATGACAAGGAAATTGA...TCCGGATTTATGCTTGTAAGATGACCTGACTCTGTAAAATAAGTGTGAAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACTCTTTTCCTGCATCTTaGAACCTTCGGTTGGTATCG +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHSFPAS*NLRLVS
Trigger: CGATACCAACCGAAGGTTTCAAGATGCAGGAAAAGA...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCTTCAAAAATGTCCCTaGAAATACCAGCCCACTTCT +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDLQKCP*KYQPTS
Trigger: AGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAAACTATATTGTGTGCGTTTGGCTaGTCATCATACACAGATCTT +
Preference number: 4 (lower is better)
Translates to: SLITAVFSLSAVAASQTILCAFG*SSYTDL
Trigger: AAGATCTGTGTATGATGATCAGCCAAACGCACACAA...TATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGCTCTTCACACTTATTTTACAGAGTCAGGTCATCTTACAAGCATAAATCCGGATTCTTTGGGAAAGATTaGTTTTCGAGGTCTGGATCC +
Preference number: 4 (lower is better)
Translates to: SSSHLFYRVRSSYKHKSGFFGKD*FSRSGS
Trigger: GGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAA...TCCGGATTTATGCTTGTAAGATGACCTGACTCTGTAAAATAAGTGTGAAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCAGTCCTCTAGGTATTTaGAAGCTTGTTCCAGGTGTG +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVSPLGI*KLVPGV
Trigger: CACACCTGGAACAAGCTTGCAAATACCTAGAGGACT...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACCTGTCCAGTAGCATCTaGATTAAGGATGTGGACAGA +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHLSSSI*IKDVDR
Trigger: TCTGTCCACATCCTTAATGCAGATGCTACTGGACAG...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AGCTCTTCACACTTATTTTACAGAGTCAGGTCATCTTACAAGCATAAATCCGGAGTCCATAAAGTCTTGTaGTGTGAACGGTTTCTTGAG +
Preference number: 4 (lower is better)
Translates to: SSSHLFYRVRSSYKHKSGVHKVL*CERFLE
Trigger: CTCAAGAAACCGTTCACACCACAAGACTTTATGGAC...TCCGGATTTATGCTTGTAAGATGACCTGACTCTGTAAAATAAGTGTGAAGAGCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCCACAAAGCCCTGGTaGTGGAAGTTACACATTTTT +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVSTKPW*WKLHIF
Trigger: AAAAATGTGTAACTTCCATCACCAGGGCTTTGTGGA...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACTTTCCAGAAAGTCCTTaGGATCAGACATGGAGATGT +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHFPESP*DQTWRC
Trigger: ACATCTCCATGTCTGATCTCAAGGACTTTCTGGAAA...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCCTTCAAAAATGTCCCTaGAAATACCAGCCCACTTCT +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVLQKCP*KYQPTS
Trigger: AGAAGTGGGCTGGTATTTTCAGGGACATTTTTGAAG...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCCTATTTTGTCAGAATaGTTTCGGATGCTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDPILSE*FRMLSR
Trigger: TCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAATATTATTTTGCTTCTaGAGAGCAACACTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLILFCF*RATLKL
Trigger: GAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATAT...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATATTATTTTGCTTCTaGAGAGCAACACTGAAGCTC +
Preference number: 4 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVILFCF*RATLKL
Trigger: GAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATAT...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTTCTTTGGGAAAGATTaGTTTTCGAGGTCTGGATCC +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVFFGKD*FSRSGS
Trigger: GGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAA...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCATATATTTCTCCTTCTaGCGCATGTCGAGCATCCTT +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVIYFSF*RMSSIL
Trigger: AAGGATGCTCGACATGCGGCAGAAGGAGAAATATAT...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
3UTR CAA 72 bp TTAAAAATCCATACAAATGATGTTTGCCGCCATTGCTaGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTAC +
Preference number: 4 (lower is better)
Translates to: LKIHTNDVCRHC*FKPSSVSFLYY
Trigger: GTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATGGATTTTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR TCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGTCACGTGTAAAATGTaGTCTTCCACAACAAAGAAC +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHVTCKM*SSTTKN
Trigger: GTTCTTTGTTGTGGAAGATCACATTTTACACGTGAC...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCCCTATTTTGTCAGAATaGTTTCGGATGCTTTCCAGA +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVPILSE*FRMLSR
Trigger: TCTGGAAAGCATCCGAAAGCATTCTGACAAAATAGG...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAATATGTTATTCTTCTTaGTGGTGTCCTTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: ALISVFPLLQFLASVNKLICYSS*WCPSSS
Trigger: AGAAGATGAAGGACACCAGCAAGAAGAATAACATAT...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AGCTCTTCACACTTATTTTACAGAGTCAGGTCATCTTACAAGCATAAATCCGGACATAGGAAACTTCTTTaGGAAAGATTGCTTTTCGAG +
Preference number: 4 (lower is better)
Translates to: SSSHLFYRVRSSYKHKSGHRKLL*ERLLFE
Trigger: CTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATG...TCCGGATTTATGCTTGTAAGATGACCTGACTCTGTAAAATAAGTGTGAAGAGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
3UTR CAA 72 bp TACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTaGTGTCACTGTGATTTACCCAAAGGAAAATGTACA +
Preference number: 4 (lower is better)
Translates to: YNVEKTEVRFTH*CHCDLPKGKCT
Trigger: TGTACATTTTCCTTTGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp CATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCAGTAATACCTTTTCATaGTCATCTGTTCCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: HQCLSSTTVFGFCKQVIVSNTFS*SSVPSA
Trigger: AGCTGAAGGAACAGATGAGCATGAAAAGGTATTACT...GACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR GCA 90 bp GATTACAATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATATATGTTATTCTTCTTaGTGGTGTCCTTCATCTTCT +
Preference number: 4 (lower is better)
Translates to: DYNVEKTEVRFTHLCHCDICYSS*WCPSSS
Trigger: AGAAGATGAAGGACACCAGCAAGAAGAATAACATAT...ATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACATTGTAATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CCA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACCATAGGAAACTTCTTTaGGAAAGATTGCTTTTCGAG +
Preference number: 4 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHHRKLL*ERLLFE
Trigger: CTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATG...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 90 bp ATTCTTCTTGCTGGTGTCCTTCATCTTCTCCAAAAGAGTGAGGGCTaGGTGTGGGTTCACTCGGAGGTACTTGGAAGCCGGCTGCCCATA +
Preference number: 5 (lower is better)
Translates to: ILLAGVLHLLQKSEG*VWVHSEVLGSRLPI
Trigger: TATGGGCAGCCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAAGATGAAGGACACCAGCAAGAAGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp CCTGTCGTGATTTCATTCTGTAGGAAGAACATGTCTAACAGGGACAGGCTACACCTGCAGGGTGTCCCCTaGGAATCCTGGCACAGGCTC +
Preference number: 5 (lower is better)
Translates to: PVVISFCRKNMSNRDRLHLQGVP*ESWHRL
Trigger: GAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAG...GTGTAGCCTGTCCCTGTTAGACATGTTCTTCCTACAGAATGAAATCACGACAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS CCA 90 bp CGGAGTTTAGGGAGTGTCTCCATCATGAGCTGGCAGAAGCGGTACTaGCTGACCCGGGGAAAGTACACATTCTCTAGCTGTTCCATTGTT +
Preference number: 5 (lower is better)
Translates to: RSLGSVSIMSWQKRY*LTRGKYTFSSCSIV
Trigger: AACAATGGAACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 90 bp TCTTTGATGTCTTCCCGGAGTTTAGGGAGTGTCTCCATCATGAGCTaGCAGAAGCGGTACTGGCTGACCCGGGGAAAGTACACATTCTCT +
Preference number: 5 (lower is better)
Translates to: SLMSSRSLGSVSIMS*QKRYWLTRGKYTFS
Trigger: AGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGACATCAAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGGAAGCTCTTCTGCTGTaGTGCCTGCTTCATGGCTGC +
Preference number: 5 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMEALLL*CLLHGC
Trigger: GCAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTC...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 90 bp GAGCTGGCAAACAGTTCGCACTGTATGACATCGAGGTTAAACTGCTaGACGGCTCCCATGCTGATCTGCTTTAACTCACTGTCCAGTAGC +
Preference number: 5 (lower is better)
Translates to: ELANSSHCMTSRLNC*TAPMLICFNSLSSS
Trigger: GCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACTGTTTGCCAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACACTGCAGGGTGTCCCCTaGGAATCCTGGCACAGGCTC +
Preference number: 5 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITLQGVP*ESWHRL
Trigger: GAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAG...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS GCA 90 bp TCAGAGCTGGCAAACAGTTCGCACTGTATGACATCGAGGTTAAACTaGTGCACGGCTCCCATGCTGATCTGCTTTAACTCACTGTCCAGT +
Preference number: 5 (lower is better)
Translates to: SELANSSHCMTSRLN*CTAPMLICFNSLSS
Trigger: ACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACTGTTTGCCAGCTCTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 90 bp GTCAAAGAGCCGGTTGACTGGGAAGCCATAACCCTGCAGAGTGTCTaGAAAAATTACGATGAGATTCTTCAGCTCCAGAACAAGGTCAGG +
Preference number: 5 (lower is better)
Translates to: VKEPVDWEAITLQSV*KNYDEILQLQNKVR
Trigger: CCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GTTTTCAGAGTCCAGTTGATCCAGTTTGTTTCCACAGCACTGAGATCTTCTCTGGAAGCTCTTCTGCTGTaGTGCCTGCTTCATGGCTGC +
Preference number: 5 (lower is better)
Translates to: VFRVQLIQFVSTALRSSLEALLL*CLLHGC
Trigger: GCAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTC...CAGAGAAGATCTCAGTGCTGTGGAAACAAACTGGATCAACTGGACTCTGAAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCTGCAGGGTGTCCCCTaGGAATCCTGGCACAGGCTC +
Preference number: 5 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDLQGVP*ESWHRL
Trigger: GAGCCTGTGCCAGGATTCCAAGGGGACACCCTGCAG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 90 bp TGTATGACATCGAGGTTAAACTGCTGCACGGCTCCCATGCTGATCTaGTTTAACTCACTGTCCAGTAGCATCTGCATTAAGGATGTGGAC +
Preference number: 5 (lower is better)
Translates to: CMTSRLNCCTAPMLI*FNSLSSSICIKDVD
Trigger: GTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 90 bp ATCAACTGTTTCATGCACACTCGACTGCGGCTGCAGAACCAGGCGTaGCTGCTTCTTCCTTTGCTTCCGGTAATAATTTTCAAATGTTTC +
Preference number: 5 (lower is better)
Translates to: INCFMHTRLRLQNQA*LLLPLLPVIIFKCF
Trigger: GAAACATTTGAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCACGCCTGGTTCTGCAGCCGCAGTCGAGTGTGCATGAAACAGTTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 90 bp ACTGTCTCTATCAGCTTCTGTCTGTCTCGGTCATTCTTCCGGAACTaGGCGAATATGTTATTCTTCTTGCTGGTGTCCTTCATCTTCTCC +
Preference number: 5 (lower is better)
Translates to: TVSISFCLSRSFFRN*ANMLFFLLVSFIFS
Trigger: GGAGAAGATGAAGGACACCAGCAAGAAGAATAACATATTCGCCCAGTTCCGGAAGAATGACCGAGACAGACAGAAGCTGATAGAGACAGT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp TCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGACATGGAGATGTCTTaGATGTCTTCCCGGAGTTTA +
Preference number: 5 (lower is better)
Translates to: SVNKLLSHDQCWPQRSTQDMEMS*MSSRSL
Trigger: TAAACTCCGGGAAGACATCAAAGACATCTCCATGTC...CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAGAAGCTCTTCTGCTGTaGTGCCTGCTTCATGGCTGC +
Preference number: 5 (lower is better)
Translates to: ALISVFPLLQFLASVNKLEALLL*CLLHGC
Trigger: GCAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTC...TAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGGCATGTGCCTGCTTCTTCCTTaGCTTCCGGTAATAATTTTC +
Preference number: 5 (lower is better)
Translates to: KQVIVSRPVLATEKHSGMCLLLP*LPVIIF
Trigger: GAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCA...CATGCCTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp TCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCCACAGAGAAGCACTCAGCCATTAAATAACCACTaGCTCTCCCATCTGACTCAG +
Preference number: 5 (lower is better)
Translates to: SVNKLLSHDQCWPQRSTQPLNNH*LSHLTQ
Trigger: CTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGG...CTGAGTGCTTCTCTGTGGCCAGCACTGGTCGTGAGACAATAACTTGTTTACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCAGCATCGGCCCTTACTTaGAGGAGTTCCGTAATCGCA +
Preference number: 5 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPASALT*RSSVIA
Trigger: TGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGC...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGGCATCGGCCCTTACTTaGAGGAGTTCCGTAATCGCA +
Preference number: 5 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLASALT*RSSVIA
Trigger: TGCGATTACGGAACTCCTCAAAGTAAGGGCCGATGC...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GGAAAATGTACACGTGCTGGGTGGGTTTTCAGAGTCCAGTTGATCCAGTTTGTTGCTGCTTCACCTATTTaGTCAGAATGCTTTCGGATG +
Preference number: 5 (lower is better)
Translates to: GKCTRAGWVFRVQLIQFVAASPI*SECFRM
Trigger: CATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGC...AACAAACTGGATCAACTGGACTCTGAAAACCCACCCAGCACGTGTACATTTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp CCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCGGACAGCAATTATCTTaGAGAGGGCCATGTTCCAGA +
Preference number: 5 (lower is better)
Translates to: PLLQFLASVNKLLSHDQCGQQLS*RGPCSR
Trigger: TCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCC...GCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp CATACAAATGATGTTTGCCGCCATTGCTTGTTTAAGCCCTCATCAGTGTCTTTCGGACAGCAATTATCTTaGAGAGGGCCATGTTCCAGA +
Preference number: 5 (lower is better)
Translates to: HTNDVCRHCLFKPSSVSFGQQLS*RGPCSR
Trigger: TCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCC...GAAAGACACTGATGAGGGCTTAAACAAGCAATGGCGGCAAACATCATTTGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACAGGACAGCAATTATCTTaGAGAGGGCCATGTTCCAGA +
Preference number: 5 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITGQQLS*RGPCSR
Trigger: TCTGGAACATGGCCCTCTCAAAGATAATTGCTGTCC...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTACTTCTTGTGTGCGTTaGGCTGATCATCATACACAG +
Preference number: 5 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCTSCVR*ADHHTQ
Trigger: CTGTGTATGATGATCAGCCAAACGCACACAAGAAGT...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACAGCTGCTTCACCTATTTaGTCAGAATGCTTTCGGATG +
Preference number: 5 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITAASPI*SECFRM
Trigger: CATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGC...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTCTGGTCAGCAGCAGATaGGTTGATTTCCTAAGCATG +
Preference number: 5 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVLVSSR*VDFLSM
Trigger: CATGCTTAGGAAATCAACCAATCTGCTGCTGACCAG...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCAACTTCTTGTGTGCGTTaGGCTGATCATCATACACAG +
Preference number: 5 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPTSCVR*ADHHTQ
Trigger: CTGTGTATGATGATCAGCCAAACGCACACAAGAAGT...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGCTCTTTTCCTGCATCTaGAAACCTTCGGTTGGTATC +
Preference number: 5 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLLFSCI*KPSVGI
Trigger: GATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTGACATGGAGATGTCTTaGATGTCTTCCCGGAGTTTA +
Preference number: 5 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVDMEMS*MSSRSL
Trigger: TAAACTCCGGGAAGACATCAAAGACATCTCCATGTC...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCTTGTTTAAGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTTGCCTGCTTCTTCCTTaGCTTCCGGTAATAATTTTC +
Preference number: 5 (lower is better)
Translates to: ACLSPHQCLSSTTVFGFCCLLLP*LPVIIF
Trigger: GAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCA...ACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCTTAAACAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCTGGTCAGCAGCAGATaGGTTGATTTCCTAAGCATG +
Preference number: 5 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDLVSSR*VDFLSM
Trigger: CATGCTTAGGAAATCAACCAATCTGCTGCTGACCAG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGCTCTTCACACTTATTTTACAGAGTCAGGTCATCTTACAAGCATAAATCCGGACTGGTCAGCAGCAGATaGGTTGATTTCCTAAGCATG +
Preference number: 5 (lower is better)
Translates to: SSSHLFYRVRSSYKHKSGLVSSR*VDFLSM
Trigger: CATGCTTAGGAAATCAACCAATCTGCTGCTGACCAG...TCCGGATTTATGCTTGTAAGATGACCTGACTCTGTAAAATAAGTGTGAAGAGCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp ATGTCGAGAAAACAGAGGTCAGGTTTACACATTTGTGTCACTGTGATTTACCCACCATTAAATAACCACTaGCTCTCCCATCTGACTCAG +
Preference number: 5 (lower is better)
Translates to: MSRKQRSGLHICVTVIYPPLNNH*LSHLTQ
Trigger: CTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGG...TGGGTAAATCACAGTGACACAAATGTGTAAACCTGACCTCTGTTTTCTCGACAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS TCA 90 bp CGTTATATTGATCTCTTATTTCGAATAAAAGGTCAAAGAGCCGGTTaGCTGGGAAGCCATAACCCTGCAGAGTGTCTGCAAAAATTACGA +
Preference number: 5 (lower is better)
Translates to: RYIDLLFRIKGQRAG*LGSHNPAECLQKLR
Trigger: TCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATCAATATAACG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS TCA 90 bp ATACAAGCGTCTAGCTTTTCCATAAACTTCTTGTGTGCGTTTGGCTaGTCATCATACACAGATCTTAAAGTAGCTTCAATGGGCAGCTCA +
Preference number: 5 (lower is better)
Translates to: IQASSFSINFLCAFG*SSYTDLKVASMGSS
Trigger: TGAGCTGCCCATTGAAGCTACTTTAAGATCTGTGTATGATGATCAGCCAAACGCACACAAGAAGTTTATGGAAAAGCTAGACGCTTGTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGCTCTTCACACTTATTTTACAGAGTCAGGTCATCTTACAAGCATAAATCCGGAACTTCTTGTGTGCGTTaGGCTGATCATCATACACAG +
Preference number: 5 (lower is better)
Translates to: SSSHLFYRVRSSYKHKSGTSCVR*ADHHTQ
Trigger: CTGTGTATGATGATCAGCCAAACGCACACAAGAAGT...TCCGGATTTATGCTTGTAAGATGACCTGACTCTGTAAAATAAGTGTGAAGAGCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCTCTTTTCCTGCATCTaGAAACCTTCGGTTGGTATC +
Preference number: 5 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDLFSCI*KPSVGI
Trigger: GATACCAACCGAAGGTTTCAAGATGCAGGAAAAGAG...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACGACATGGAGATGTCTTaGATGTCTTCCCGGAGTTTA +
Preference number: 5 (lower is better)
Translates to: VFPLLQFLASVNKLLSHDDMEMS*MSSRSL
Trigger: TAAACTCCGGGAAGACATCAAAGACATCTCCATGTC...GTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCTAAAAGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAATGCCTGCTTCTTCCTTaGCTTCCGGTAATAATTTTC +
Preference number: 5 (lower is better)
Translates to: AKSLITAVFSLSAVAASQCLLLP*LPVIIF
Trigger: GAAAATTATTACCGGAAGCAAAGGAAGAAGCAGGCA...TTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACTTTTAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp GCCATCCATGTAAGCCACACTGAGGTGAAGCTAGAAGCTAAAAGTCTAATAACAAAAGTCCATAAAGTCTaGTGGTGTGAACGGTTTCTT +
Preference number: 5 (lower is better)
Translates to: AIHVSHTEVKLEAKSLITKVHKV*WCERFL
Trigger: AAGAAACCGTTCACACCACAAGACTTTATGGACTTT...TGTTATTAGACTTTTAGCTTCTAGCTTCACCTCAGTGTGGCTTACATGGATGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGTCTAATAACAGCAGTATTTTCCTTATCAGCAGTGGCTGCATCCCAAACTATACCATTAAATAACCACTaGCTCTCCCATCTGACTCAG +
Preference number: 5 (lower is better)
Translates to: SLITAVFSLSAVAASQTIPLNNH*LSHLTQ
Trigger: CTGAGTCAGATGGGAGAGCAAGTGGTTATTTAATGG...TATAGTTTGGGATGCAGCCACTGCTGATAAGGAAAATACTGCTGTTATTAGACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238954.2
CDS TCA 90 bp ATAGGAAACTTCTTTGGGAAAGATTGCTTTTCGAGGTCTGGATCCTaGAACGGGAATCTACTGATGACTACTTTATATTCTTCCTCACTG +
Preference number: 5 (lower is better)
Translates to: IGNFFGKDCFSRSGS*NGNLLMTTLYSSSL
Trigger: CAGTGAGGAAGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGCTGCTTCACCTATTTaGTCAGAATGCTTTCGGATG +
Preference number: 5 (lower is better)
Translates to: SVFPLLQFLASVNKLLSHAASPI*SECFRM
Trigger: CATCCGAAAGCATTCTGACAAAATAGGTGAAGCAGC...GTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp TCTACTACAGTTTTTGGCTTCTGTAAACAAGTTATTGTCTCACGACCAGTGCTGAAAGTCCATAAAGTCTaGTGGTGTGAACGGTTTCTT +
Preference number: 5 (lower is better)
Translates to: STTVFGFCKQVIVSRPVLKVHKV*WCERFL
Trigger: AAGAAACCGTTCACACCACAAGACTTTATGGACTTT...CAGCACTGGTCGTGAGACAATAACTTGTTTACAGAAGCCAAAAACTGTAGTAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS-3UTR CAA 90 bp AGCCCTCATCAGTGTCTTTCCTCTACTACAGTTTTTGGCTTCTGTAAACAAGTTAAAGTCCATAAAGTCTaGTGGTGTGAACGGTTTCTT +
Preference number: 5 (lower is better)
Translates to: SPHQCLSSTTVFGFCKQVKVHKV*WCERFL
Trigger: AAGAAACCGTTCACACCACAAGACTTTATGGACTTT...AACTTGTTTACAGAAGCCAAAAACTGTAGTAGAGGAAAGACACTGATGAGGGCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp GTGCGTTTGGCTGATCATCATACACAGATCGGAGGGTaGGCCCTACGCAGGCGGTGTCGGTGCTTTCGATCT +
Preference number: 6 (lower is better)
Translates to: VRLADHHTQIGG*ALRRRCRCFRS
Trigger: AGATCGAAAGCACCGACACCGCCTGCGTAGGGCCCACCCTCCGATCTGTGTATGATGATCAGCCAAACGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
CDS GCA 72 bp GCTGGTGTCCTTCATCTTCTCCAAAAGAGTGAGGGCTaGGTGTGGGTTCACTCGGAGGTACTTGGAAGCCGG +
Preference number: 6 (lower is better)
Translates to: AGVLHLLQKSEG*VWVHSEVLGSR
Trigger: CCGGCTTCCAAGTACCTCCGAGTGAACCCACACGCAGCCCTCACTCTTTTGGAGAAGATGAAGGACACCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp TCTTCCCGGAGTTTAGGGAGTGTCTCCATCATGAGCTaGCAGAAGCGGTACTGGCTGACCCGGGGAAAGTAC +
Preference number: 6 (lower is better)
Translates to: SSRSLGSVSIMS*QKRYWLTRGKY
Trigger: GTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCCTAAACTCCGGGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp GGGAGTGTCTCCATCATGAGCTGGCAGAAGCGGTACTaGCTGACCCGGGGAAAGTACACATTCTCTAGCTGT +
Preference number: 6 (lower is better)
Translates to: GSVSIMSWQKRY*LTRGKYTFSSC
Trigger: ACAGCTAGAGAATGTGTACTTTCCCCGGGTCAGCCAGTACCGCTTCTGCCAGCTCATGATGGAGACACTCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CAA 90 bp CTGTCTCGGTCATTCTTCCGGAACTGGGCGAATATGTTATTCTTCTaGCTGGTGTCCTTCATCTTCTCCAAAAGAGTGAGGGCTGCGTGT +
Preference number: 6 (lower is better)
Translates to: LSRSFFRNWANMLFF*LVSFIFSKRVRAAC
Trigger: ACACGCAGCCCTCACTCTTTTGGAGAAGATGAAGGACACCAGCAAGAAGAATAACATATTCGCCCAGTTCCGGAAGAATGACCGAGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 72 bp CCGGTTGACTGGGAAGCCATAACCCTGCAGAGTGTCTaGAAAAATTACGATGAGATTCTTCAGCTCCAGAAC +
Preference number: 6 (lower is better)
Translates to: PVDWEAITLQSV*KNYDEILQLQN
Trigger: GTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 72 bp TCGAGGTTAAACTGCTGCACGGCTCCCATGCTGATCTaGTTTAACTCACTGTCCAGTAGCATCTGCATTAAG +
Preference number: 6 (lower is better)
Translates to: SRLNCCTAPMLI*FNSLSSSICIK
Trigger: CTTAATGCAGATGCTACTGGACAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 72 bp AACAGTTCGCACTGTATGACATCGAGGTTAAACTGCTaGACGGCTCCCATGCTGATCTGCTTTAACTCACTG +
Preference number: 6 (lower is better)
Translates to: NSSHCMTSRLNC*TAPMLICFNSL
Trigger: CAGTGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACTGTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS GCA 72 bp GCAAACAGTTCGCACTGTATGACATCGAGGTTAAACTaGTGCACGGCTCCCATGCTGATCTGCTTTAACTCA +
Preference number: 6 (lower is better)
Translates to: ANSSHCMTSRLN*CTAPMLICFNS
Trigger: TGAGTTAAAGCAGATCAGCATGGGAGCCGTGCAGCAGTTTAACCTCGATGTCATACAGTGCGAACTGTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS TCA 72 bp AGCCATAACCCTGCAGAGTGTCTGCAAAAATTACGATaGGATTCTTCAGCTCCAGAACAAGGTCAGGGTCAG +
Preference number: 6 (lower is better)
Translates to: SHNPAECLQKLR*DSSAPEQGQGQ
Trigger: CTGACCCTGACCTTGTTCTGGAGCTGAAGAATCTCATCGTAATTTTTGCAGACACTCTGCAGGGTTATGGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp TTAACTCACTGTCCAGTAGCATCTGCATTAAGGATGTaGACAGATGTTGGCAGGCTGACATGCAAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: LTHCPVASALRM*TDVGRLTCKLS
Trigger: AGACAGCTTGCATGTCAGCCTGCCAACATCTGTCCACATCCTTAATGCAGATGCTACTGGACAGTGAGTTAA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS TCA 72 bp CAAACCTCATATTATTTTGCTTCTGCAGAGCAACACTaGAGCTCTTCTGCTGTTGTGCCTGCTTCATGGCTG +
Preference number: 6 (lower is better)
Translates to: QTSYYFASAEQH*SSSAVVPASWL
Trigger: CAGCCATGAAGCAGGCACAACAGCAGAAGAGCTTCAGTGTTGCTCTGCAGAAGCAAAATAATATGAGGTTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS TCA 72 bp GATCTCTTATTTCGAATAAAAGGTCAAAGAGCCGGTTaGCTGGGAAGCCATAACCCTGCAGAGTGTCTGCAA +
Preference number: 6 (lower is better)
Translates to: DLLFRIKGQRAG*LGSHNPAECLQ
Trigger: TTGCAGACACTCTGCAGGGTTATGGCTTCCCAGTCAACCGGCTCTTTGACCTTTTATTCGAAATAAGAGATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp AATAAGAGGCACAGACTGGGACATAGGAAACTTCTTTaGGAAAGATTGCTTTTCGAGGTCTGGATCCTGAAA +
Preference number: 6 (lower is better)
Translates to: NKRHRLGHRKLL*ERLLFEVWILK
Trigger: TTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCTATGTCCCAGTCTGTGCCTCTTATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp TTAAATAACCACTTGCTCTCCCATCTGACTCAGCCATaGTCCAGTCATAATCAGCCAGCTGAACAAATTCAT +
Preference number: 6 (lower is better)
Translates to: LNNHLLSHLTQP*SSHNQPAEQIH
Trigger: ATGAATTTGTTCAGCTGGCTGATTATGACTGGACCATGGCTGAGTCAGATGGGAGAGCAAGTGGTTATTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CCA 72 bp AGGAAACTTCTTTGGGAAAGATTGCTTTTCGAGGTCTaGATCCTGAAACGGGAATCTACTGATGACTACTTT +
Preference number: 6 (lower is better)
Translates to: RKLLWERLLFEV*ILKRESTDDYF
Trigger: AAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAAGTTTCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CAA 90 bp ATAAGGTTCAGTAAACAGCTACTCAGAATTCTGGTCAGCAGCAGATaGGTTGATTTCCTAAGCATGTCATCTATTTCTGTTGAGCTTCGG +
Preference number: 6 (lower is better)
Translates to: IRFSKQLLRILVSSR*VDFLSMSSISVELR
Trigger: CCGAAGCTCAACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACTGAACCTTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS TCA 72 bp TTCTTTGGGAAAGATTGCTTTTCGAGGTCTGGATCCTaGAACGGGAATCTACTGATGACTACTTTATATTCT +
Preference number: 6 (lower is better)
Translates to: FFGKDCFSRSGS*NGNLLMTTLYS
Trigger: AGAATATAAAGTAGTCATCAGTAGATTCCCGTTTCAGGATCCAGACCTCGAAAAGCAATCTTTCCCAAAGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2
CDS CAA 72 bp AGTAAACAGCTACTCAGAATTCTGGTCAGCAGCAGATaGGTTGATTTCCTAAGCATGTCATCTATTTCTGTT +
Preference number: 6 (lower is better)
Translates to: SKQLLRILVSSR*VDFLSMSSISV
Trigger: AACAGAAATAGATGACATGCTTAGGAAATCAACCAATCTGCTGCTGACCAGAATTCTGAGTAGCTGTTTACT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000066439.8
ENSMUST00000238817.2
ENSMUST00000238954.2