RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EXOC3L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000043251

Ensembl transcript IDs: ENSMUST00000057855.4, ENSMUST00000212777.2

Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TCTCGTGCCAGCCGCCCCGCAGCTCCTGCAGCCGCCTCCACAGCTTaGCCTAGGGCCTCAGCCAGAAGGCCTAGCCCCTGGAAGATTGGC +
Preference number: 1 (lower is better)
Translates to: SRASRPAAPAAASTA*PRASARRPSPWKIG
Trigger: GCCAATCTTCCAGGGGCTAGGCCTTCTGGCTGAGGCCCTAGGCCAAGCTGTGGAGGCGGCTGCAGGAGCTGCGGGGCGGCTGGCACGAGA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 90 bp TCAAGCCTGCCACCTCGAGGCCAAGCAGTGTGGGGTCGTGGAGGTTaGGCAGTTCCCTCAGCGCGAGCAGGACGGGCGCGCAGTGAGCGC +
Preference number: 1 (lower is better)
Translates to: SSLPPRGQAVWGRGG*AVPSARAGRARSER
Trigger: GCGCTCACTGCGCGCCCGTCCTGCTCGCGCTGAGGGAACTGCTCAACCTCCACGACCCCACACTGCTTGGCCTCGAGGTGGCAGGCTTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp AAGTGGACCCGCTCCAGGCCCTCCTGTAGCGCCCGAAGACATCGCTaGCGCCAGTCTCGGGGTGCCTGCCCCAGGATTGTGCGCTCAGTC +
Preference number: 1 (lower is better)
Translates to: KWTRSRPSCSARRHR*RQSRGACPRIVRSV
Trigger: GACTGAGCGCACAATCCTGGGGCAGGCACCCCGAGACTGGCGGCAGCGATGTCTTCGGGCGCTACAGGAGGGCCTGGAGCGGGTCCACTT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp GCAAACGTGTCAGCAGCTCCTAGCTCGGGCCCCGCGAGGAGTTGCTaGACGCTACGGCGCAGGCCACTGTGCAGGGTGTGGGCCCATAGC +
Preference number: 1 (lower is better)
Translates to: ANVSAAPSSGPARSC*TLRRRPLCRVWAHS
Trigger: GCTATGGGCCCACACCCTGCACAGTGGCCTGCGCCGTAGCGTGCAGCAACTCCTCGCGGGGCCCGAGCTAGGAGCTGCTGACACGTTTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 90 bp AGCTCTTTGAGCTGGGCAGCATCCTGCCGAAGTCGCTCAGCCGCCTaGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTGCATC +
Preference number: 1 (lower is better)
Translates to: SSLSWAASCRSRSAA*LRSSVPRHTRRPCI
Trigger: GATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGCGGCTGAGCGACTTCGGCAGGATGCTGCCCAGCTCAAAGAGCT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp AAGGCAAACGTGTCAGCAGCTCCTAGCTCGGGCCCCGCGAGGAGTTaGTGCACGCTACGGCGCAGGCCACTGTGCAGGGTGTGGGCCCAT +
Preference number: 1 (lower is better)
Translates to: KANVSAAPSSGPARS*CTLRRRPLCRVWAH
Trigger: ATGGGCCCACACCCTGCACAGTGGCCTGCGCCGTAGCGTGCAGCAACTCCTCGCGGGGCCCGAGCTAGGAGCTGCTGACACGTTTGCCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp GCCGCCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTaGATCAGAGCCCTTAGGTATTGTAACACCACGGTTCGTTCCGCC +
Preference number: 1 (lower is better)
Translates to: AAWLRSSVPRHTRRP*IRALRYCNTTVRSA
Trigger: GGCGGAACGAACCGTGGTGTTACAATACCTAAGGGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGCGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp GTCTCGGGGTGCCTGCCCCAGGATTGTGCGCTCAGTCTCCACCTCTaGCACACGAATAGCAGCTACCAGCAGGGCTGGGTCCTCTCGTGC +
Preference number: 1 (lower is better)
Translates to: VSGCLPQDCALSLHL*HTNSSYQQGWVLSC
Trigger: GCACGAGAGGACCCAGCCCTGCTGGTAGCTGCTATTCGTGTGGCAGAGGTGGAGACTGAGCGCACAATCCTGGGGCAGGCACCCCGAGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp TCCAGGCCCAAACCAAGGAAAAGCTCTTTGAGCTGGGCAGCATCCTaGCGAAGTCGCTCAGCCGCCTGGCTCCGCTCGTCCGTACCGCGG +
Preference number: 1 (lower is better)
Translates to: SRPKPRKSSLSWAAS*RSRSAAWLRSSVPR
Trigger: CCGCGGTACGGACGAGCGGAGCCAGGCGGCTGAGCGACTTCGGCAGGATGCTGCCCAGCTCAAAGAGCTTTTCCTTGGTTTGGGCCTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp TCCTGTAGCGCCCGAAGACATCGCTGCCGCCAGTCTCGGGGTGCCTaGCCCAGGATTGTGCGCTCAGTCTCCACCTCTGCCACACGAATA +
Preference number: 1 (lower is better)
Translates to: SCSARRHRCRQSRGA*PRIVRSVSTSATRI
Trigger: TATTCGTGTGGCAGAGGTGGAGACTGAGCGCACAATCCTGGGGCAGGCACCCCGAGACTGGCGGCAGCGATGTCTTCGGGCGCTACAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 90 bp GCCTCCACAGCTTGGCCTAGGGCCTCAGCCAGAAGGCCTAGCCCCTaGAAGATTGGCAACTCCAGACCTCCTAGGGGTGCCAGTGTCTCC +
Preference number: 1 (lower is better)
Translates to: ASTAWPRASARRPSP*KIGNSRPPRGASVS
Trigger: GGAGACACTGGCACCCCTAGGAGGTCTGGAGTTGCCAATCTTCCAGGGGCTAGGCCTTCTGGCTGAGGCCCTAGGCCAAGCTGTGGAGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 90 bp CGCAGTGAGCGCTCTCTTCCAGGCCCAAACCAAGGAAAAGCTCTTTaGGCTGGGCAGCATCCTGCCGAAGTCGCTCAGCCGCCTGGCTCC +
Preference number: 1 (lower is better)
Translates to: RSERSLPGPNQGKAL*AGQHPAEVAQPPGS
Trigger: GGAGCCAGGCGGCTGAGCGACTTCGGCAGGATGCTGCCCAGCTCAAAGAGCTTTTCCTTGGTTTGGGCCTGGAAGAGAGCGCTCACTGCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp CACCGGCGCGAGGGCAGAGCGGAGAACAGGGGCTGGAGCTCAACCTaGAGTACTTCCAAAACCAGGCGGCAGATCCTCCTTTGTACGTCG +
Preference number: 1 (lower is better)
Translates to: HRREGRAENRGWSST*STSKTRRQILLCTS
Trigger: CGACGTACAAAGGAGGATCTGCCGCCTGGTTTTGGAAGTACTGCAGGTTGAGCTCCAGCCCCTGTTCTCCGCTCTGCCCTCGCGCCGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 90 bp GAACTCAATAGCCACCGGCGCGAGGGCAGAGCGGAGAACAGGGGCTaGAGCTCAACCTGCAGTACTTCCAAAACCAGGCGGCAGATCCTC +
Preference number: 1 (lower is better)
Translates to: ELNSHRREGRAENRG*SSTCSTSKTRRQIL
Trigger: GAGGATCTGCCGCCTGGTTTTGGAAGTACTGCAGGTTGAGCTCCAGCCCCTGTTCTCCGCTCTGCCCTCGCGCCGGTGGCTATTGAGTTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 90 bp CCGGCAGCAGGACCGAGACCGAAGATCTCAGTGCTGATTGGTGGTTaGAGGCAGACAGTAGGTAGGGCACATAGTGAGGGGCCACGGCGT +
Preference number: 1 (lower is better)
Translates to: PAAGPRPKISVLIGG*RQTVGRAHSEGPRR
Trigger: ACGCCGTGGCCCCTCACTATGTGCCCTACCTACTGTCTGCCTTCAACCACCAATCAGCACTGAGATCTTCGGTCTCGGTCCTGCTGCCGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp AGGCTCACATATGCCTCCAAGAGTCGCTCAGAGTCTATCAGGGTCTaGGTGTGGGCCACTGTAGCCGGCACTGCTTGTAGCCTTGGCAAC +
Preference number: 1 (lower is better)
Translates to: RLTYASKSRSESIRV*VWATVAGTACSLGN
Trigger: GTTGCCAAGGCTACAAGCAGTGCCGGCTACAGTGGCCCACACGCAGACCCTGATAGACTCTGAGCGACTCTTGGAGGCATATGTGAGCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp GGCAACTCCAGACCTCCTAGGGGTGCCAGTGTCTCCTCTTTCAGCTaGTCTAGTTCCCGCAGGCTCACATATGCCTCCAAGAGTCGCTCA +
Preference number: 1 (lower is better)
Translates to: GNSRPPRGASVSSFS*SSSRRLTYASKSRS
Trigger: TGAGCGACTCTTGGAGGCATATGTGAGCCTGCGGGAACTAGAGCAGCTGAAAGAGGAGACACTGGCACCCCTAGGAGGTCTGGAGTTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 90 bp CCAGGCTTCCGTACGCGCCAGAAGTCCTGGCAGAAGTGCGACGTCTaGTCACACACACCATCTAGCAACTCAGAACTCAATAGCCACCGG +
Preference number: 1 (lower is better)
Translates to: PGFRTRQKSWQKCDV*SHTPSSNSELNSHR
Trigger: CCGGTGGCTATTGAGTTCTGAGTTGCTAGATGGTGTGTGTGAGCAGACGTCGCACTTCTGCCAGGACTTCTGGCGCGTACGGAAGCCTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 90 bp ACATATGCCTCCAAGAGTCGCTCAGAGTCTATCAGGGTCTGCGTGTaGGCCACTGTAGCCGGCACTGCTTGTAGCCTTGGCAACAACCGA +
Preference number: 1 (lower is better)
Translates to: TYASKSRSESIRVCV*ATVAGTACSLGNNR
Trigger: TCGGTTGTTGCCAAGGCTACAAGCAGTGCCGGCTACAGTGGCCCACACGCAGACCCTGATAGACTCTGAGCGACTCTTGGAGGCATATGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp GCCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTGCATCAGAGCCGTCTCCTCTTTCAGCTaGTCTAGTTCCCGCAGGCTC +
Preference number: 2 (lower is better)
Translates to: AWLRSSVPRHTRRPCIRAVSSFS*SSSRRL
Trigger: GAGCCTGCGGGAACTAGAGCAGCTGAAAGAGGAGAC...GGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp GCTCAGCCGCCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTGCACTGAGCCACAAAGGCTaGCTCCAGCTGCTCAATGTT +
Preference number: 2 (lower is better)
Translates to: AQPPGSARPYRGTLGGPALSHKG*LQLLNV
Trigger: AACATTGAGCAGCTGGAGGCAGCCTTTGTGGCTCAG...TGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGCGGCTGAGC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp AACACCAGGCTTCCGTACGCGCCAGAAGTCCTGGCAGAAGTGCGACGTCTGCTCCGGCGCAGGCCACTGTaGAGGGTGTGGGCCCATAGC +
Preference number: 2 (lower is better)
Translates to: NTRLPYAPEVLAEVRRLLRRRPL*RVWAHS
Trigger: GCTATGGGCCCACACCCTGCACAGTGGCCTGCGCCG...GAGCAGACGTCGCACTTCTGCCAGGACTTCTGGCGCGTACGGAAGCCTGGTGTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 90 bp GGCCACTGTGCAGGGTGTGGGCCCATAGCTCAACCACACGGTAGCTaGGTGGGCAGCAGGGTGCCACCAATGCCTCCGCTGTTGCCAACT +
Preference number: 2 (lower is better)
Translates to: GHCAGCGPIAQPHGS*VGSRVPPMPPLLPT
Trigger: AGTTGGCAACAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCAAGCTACCGTGTGGTTGAGCTATGGGCCCACACCCTGCACAGTGGCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 90 bp CAGGTCCAAGAGGGCAGAGACGTGATCCTCGCTCACGTCGGGAAATaGCTGCCTCAAGCCTGCCACCTCGAGGCCAAGCAGTGTGGGGTC +
Preference number: 2 (lower is better)
Translates to: QVQEGRDVILAHVGK*LPQACHLEAKQCGV
Trigger: GACCCCACACTGCTTGGCCTCGAGGTGGCAGGCTTGAGGCAGCAATTTCCCGACGTGAGCGAGGATCACGTCTCTGCCCTCTTGGACCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp GCCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTGCATCAGAGCCTTTTCAGCCAGGATCTaGAGGACAATGGCTGGCATT +
Preference number: 2 (lower is better)
Translates to: AWLRSSVPRHTRRPCIRAFSARI*RTMAGI
Trigger: AATGCCAGCCATTGTCCTGCAGATCCTGGCTGAAAA...GGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR TCA 90 bp CCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTGCATCAGAGCCCATCAGGTTGGTCACTTaGATGTTTTCAGCCAGGATC +
Preference number: 2 (lower is better)
Translates to: PGSARPYRGTLGGPASEPIRLVT*MFSARI
Trigger: GATCCTGGCTGAAAACATTCAAGTGACCAACCTGAT...GGGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR TCA 90 bp GGGGCCACGGCGTCTCCCCTGAGATGGTCTCGAGAGAATCGGATCAGAGCGTCGCGCCCGCCGATGCAATaGGTCACTAATCAGGTTGGT +
Preference number: 2 (lower is better)
Translates to: GATASPLRWSRENRIRASRPPMQ*VTNQVG
Trigger: ACCAACCTGATTAGTGACTCATTGCATCGGCGGGCG...CGACGCTCTGATCCGATTCTCTCGAGACCATCTCAGGGGAGACGCCGTGGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp GGGGCCACGGCGTCTCCCCTGAGATGGTCTCGAGAGAATCGGATCAGAGCGTCGTTCCCCGTGTACACATaGAGTGCCCAGTGCAGCAAG +
Preference number: 2 (lower is better)
Translates to: GATASPLRWSRENRIRASFPVYT*SAQCSK
Trigger: CTTGCTGCACTGGGCACTGCATGTGTACACGGGGAA...CGACGCTCTGATCCGATTCTCTCGAGACCATCTCAGGGGAGACGCCGTGGCCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 90 bp CAGCTTGGCCTAGGGCCTCAGCCAGAAGGCCTAGCCCCTGGAAGATaGGCAACTCCAGACCTCCTAGGGGTGCCAGTGTCTCCTCTTTCA +
Preference number: 2 (lower is better)
Translates to: QLGLGPQPEGLAPGR*ATPDLLGVPVSPLS
Trigger: TGAAAGAGGAGACACTGGCACCCCTAGGAGGTCTGGAGTTGCCAATCTTCCAGGGGCTAGGCCTTCTGGCTGAGGCCCTAGGCCAAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR TCA 90 bp GCTCCTGCAGCCGCCTCCACAGCTTGGCCTAGGGCCTCAGCCAGAAGGCCTAGCAACCGAGTCAGGATCTaGAGTTGTTTGTGCTGGACA +
Preference number: 2 (lower is better)
Translates to: APAAASTAWPRASARRPSNRVRI*SCLCWT
Trigger: TGTCCAGCACAAACAACTTCAGATCCTGACTCGGTT...GCTAGGCCTTCTGGCTGAGGCCCTAGGCCAAGCTGTGGAGGCGGCTGCAGGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp GTACCGCGGCACACTAGGCGGCCCTGCATCAGAGCCCTTAGGTATTGTAACACCGGTTCGTTCCGCCTCTaGCAGCAGCAGCTGAACACC +
Preference number: 2 (lower is better)
Translates to: VPRHTRRPCIRALRYCNTGSFRL*QQQLNT
Trigger: GGTGTTCAGCTGCTGCTGGCAGAGGCGGAACGAACC...GGTGTTACAATACCTAAGGGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CCA 90 bp TCGCTGAAGCTTCTCAAGAATGCGCCCAGCTCTGACACTGCCATGTTATGCGCCGCCGCCTCCACAGCTTaGCCTAGGGCCTCAGCCAGA +
Preference number: 2 (lower is better)
Translates to: SLKLLKNAPSSDTAMLCAAASTA*PRASAR
Trigger: TCTGGCTGAGGCCCTAGGCCAAGCTGTGGAGGCGGC...GGCGCATAACATGGCAGTGTCAGAGCTGGGCGCATTCTTGAGAAGCTTCAGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR TCA 90 bp AGCGCAGCTTCCACTGGAGCTAAGACCCCGGAAGCTTCCCCGTCCGGCAGCAGGAAACCCTTTAGTAAGTaGTGGGCCTGGCTCAAAGCT +
Preference number: 2 (lower is better)
Translates to: SAASTGAKTPEASPSGSRKPFSK*WAWLKA
Trigger: AGCTTTGAGCCAGGCCCATCACTTACTAAAGGGTTT...CCTGCTGCCGGACGGGGAAGCTTCCGGGGTCTTAGCTCCAGTGGAAGCTGCGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp CACACGGTAGCTTGGTGGGCAGCAGGGTGCCACCAATGCCTCCGCTGTTGCCAACTCAGTCTCCACCTCTaGCACACGAATAGCAGCTAC +
Preference number: 2 (lower is better)
Translates to: HTVAWWAAGCHQCLRCCQLSLHL*HTNSSY
Trigger: GTAGCTGCTATTCGTGTGGCAGAGGTGGAGACTGAG...TTGGCAACAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCAAGCTACCGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp TCGCTGAAGCTTCTCAAGAATGCGCCCAGCTCTGACACTGCCATGTTATGCGCCTGGTGGGCAGCAGGGTaGCACCAATGCCTCCGCTGT +
Preference number: 2 (lower is better)
Translates to: SLKLLKNAPSSDTAMLCAWWAAG*HQCLRC
Trigger: ACAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCA...GGCGCATAACATGGCAGTGTCAGAGCTGGGCGCATTCTTGAGAAGCTTCAGCGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp CCTCGCTCACGTCGGGAAATTGCTGCCTCAAGCCTGCCACCTCGAGGCCAAGCAACATGCAGTGCCCAGTaGAGCAAGGCAAACGTGTCA +
Preference number: 2 (lower is better)
Translates to: PRSRREIAASSLPPRGQATCSAQ*SKANVS
Trigger: TGACACGTTTGCCTTGCTGCACTGGGCACTGCATGT...TGCTTGGCCTCGAGGTGGCAGGCTTGAGGCAGCAATTTCCCGACGTGAGCGAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CCA 90 bp AGATCCTCCTTTGTACGTCGTCCAGCGCAGCTTCCACTGGAGCTAAGACCCCGGAAGAGGGGCTCTAGCTaGGACACATCAGCCTCAGGC +
Preference number: 2 (lower is better)
Translates to: RSSFVRRPAQLPLELRPRKRGSS*DTSASG
Trigger: GCCTGAGGCTGATGTGTCCCAGCTAGAGCCCCTCTT...CCGGGGTCTTAGCTCCAGTGGAAGCTGCGCTGGACGACGTACAAAGGAGGATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CCA 90 bp TGCCAGCAGCAGCTGAACACCAGGCTTCCGTACGCGCCAGAAGTCCTGGCAGAAGGATCTGCAGGACAATaGCTGGCATTGGGGAGTGGT +
Preference number: 2 (lower is better)
Translates to: CQQQLNTRLPYAPEVLAEGSAGQ*LALGSG
Trigger: ACCACTCCCCAATGCCAGCCATTGTCCTGCAGATCC...TTCTGCCAGGACTTCTGGCGCGTACGGAAGCCTGGTGTTCAGCTGCTGCTGGCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR GCA 90 bp TCTAGCAACTCAGAACTCAATAGCCACCGGCGCGAGGGCAGAGCGGAGAACAGGTACCTCTCCATCCAGTaGCTTCTTCAGCCACTGAGC +
Preference number: 2 (lower is better)
Translates to: SSNSELNSHRREGRAENRYLSIQ*LLQPLS
Trigger: GCTCAGTGGCTGAAGAAGGCACTGGATGGAGAGGTA...CCTGTTCTCCGCTCTGCCCTCGCGCCGGTGGCTATTGAGTTCTGAGTTGCTAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CCA 90 bp ATGCGCCCAGCTCTGACACTGCCATGTTATGCGCCCGCCGATGCAATGAGTCACAGAAGGCCTAGCCCCTaGAAGATTGGCAACTCCAGA +
Preference number: 2 (lower is better)
Translates to: MRPALTLPCYAPADAMSHRRPSP*KIGNSR
Trigger: TCTGGAGTTGCCAATCTTCCAGGGGCTAGGCCTTCT...GTGACTCATTGCATCGGCGGGCGCATAACATGGCAGTGTCAGAGCTGGGCGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CCA 90 bp GCTCAATGTTCTCTGAGGTCAAGAGGGGCTCTAGCTGGGACACATCAGCCTCAGCCACTGTGCAGGGTGTaGGCCCATAGCTCAACCACA +
Preference number: 2 (lower is better)
Translates to: AQCSLRSRGALAGTHQPQPLCRV*AHSSTT
Trigger: TGTGGTTGAGCTATGGGCCCACACCCTGCACAGTGG...CTGAGGCTGATGTGTCCCAGCTAGAGCCCCTCTTGACCTCAGAGAACATTGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 72 bp AGCTGGGCAGCATCCTGCCGAAGTCGCTCAGCCGCCTaGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGG +
Preference number: 3 (lower is better)
Translates to: SWAASCRSRSAA*LRSSVPRHTRR
Trigger: CCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGCGGCTGAGCGACTTCGGCAGGATGCTGCCCAGCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp CGCTCCAGGCCCTCCTGTAGCGCCCGAAGACATCGCTaGCGCCAGTCTCGGGGTGCCTGCCCCAGGATTGTG +
Preference number: 3 (lower is better)
Translates to: RSRPSCSARRHR*RQSRGACPRIV
Trigger: CACAATCCTGGGGCAGGCACCCCGAGACTGGCGGCAGCGATGTCTTCGGGCGCTACAGGAGGGCCTGGAGCG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 72 bp CACCTCTGCCACACGAATAGCAGCTACCAGCAGGGCTaGGTCCTCTCGTGCCAGCCGCCCCGCAGCTCCTGC +
Preference number: 3 (lower is better)
Translates to: HLCHTNSSYQQG*VLSCQPPRSSC
Trigger: GCAGGAGCTGCGGGGCGGCTGGCACGAGAGGACCCAGCCCTGCTGGTAGCTGCTATTCGTGTGGCAGAGGTG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp TGGTGGGCAGCAGGGTGCCACCAATGCCTCCGCTGTTaGCAACTCGGCGGGCAAGGCTACCTGCAGAGCCTC +
Preference number: 3 (lower is better)
Translates to: WWAAGCHQCLRC*QLGGQGYLQSL
Trigger: GAGGCTCTGCAGGTAGCCTTGCCCGCCGAGTTGGCAACAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp CACACGGTAGCTTGGTGGGCAGCAGGGTGCCACCAATaGCTCCGCTGTTGCCAACTCGGCGGGCAAGGCTAC +
Preference number: 3 (lower is better)
Translates to: HTVAWWAAGCHQ*LRCCQLGGQGY
Trigger: GTAGCCTTGCCCGCCGAGTTGGCAACAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCAAGCTACCGTGTG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 72 bp AGCCACCGGCGCGAGGGCAGAGCGGAGAACAGGGGCTaGAGCTCAACCTGCAGTACTTCCAAAACCAGGCGG +
Preference number: 3 (lower is better)
Translates to: SHRREGRAENRG*SSTCSTSKTRR
Trigger: CCGCCTGGTTTTGGAAGTACTGCAGGTTGAGCTCCAGCCCCTGTTCTCCGCTCTGCCCTCGCGCCGGTGGCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 72 bp AGCAGTTCCCTCAGCGCGAGCAGGACGGGCGCGCAGTaGGCGCTCTCTTCCAGGCCCAAACCAAGGAAAAGC +
Preference number: 3 (lower is better)
Translates to: SSSLSASRTGAQ*ALSSRPKPRKS
Trigger: GCTTTTCCTTGGTTTGGGCCTGGAAGAGAGCGCTCACTGCGCGCCCGTCCTGCTCGCGCTGAGGGAACTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 72 bp GCTTGGCCTAGGGCCTCAGCCAGAAGGCCTAGCCCCTaGAAGATTGGCAACTCCAGACCTCCTAGGGGTGCC +
Preference number: 3 (lower is better)
Translates to: AWPRASARRPSP*KIGNSRPPRGA
Trigger: GGCACCCCTAGGAGGTCTGGAGTTGCCAATCTTCCAGGGGCTAGGCCTTCTGGCTGAGGCCCTAGGCCAAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 72 bp GGTAGGGCACATAGTGAGGGGCCACGGCGTCTCCCCTaGGATGGTCTCGAGAGAATCGGATCAGAGCGTCGC +
Preference number: 3 (lower is better)
Translates to: GRAHSEGPRRLP*DGLERIGSERR
Trigger: GCGACGCTCTGATCCGATTCTCTCGAGACCATCTCAGGGGAGACGCCGTGGCCCCTCACTATGTGCCCTACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp TGCCTGCCCCAGGATTGTGCGCTCAGTCTCCACCTCTaGCACACGAATAGCAGCTACCAGCAGGGCTGGGTC +
Preference number: 3 (lower is better)
Translates to: CLPQDCALSLHL*HTNSSYQQGWV
Trigger: GACCCAGCCCTGCTGGTAGCTGCTATTCGTGTGGCAGAGGTGGAGACTGAGCGCACAATCCTGGGGCAGGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CAA 90 bp CGAAGTCGCTCAGCCGCCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGAGTCAGGATCTGAAGTaGTTTGTGCTGGACAACACA +
Preference number: 3 (lower is better)
Translates to: RSRSAAWLRSSVPRHTRRSQDLK*FVLDNT
Trigger: TGTGTTGTCCAGCACAAACAACTTCAGATCCTGACT...CCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGGCGGCTGAGCGACTTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 72 bp GACACGTCTCCGCGCAGGTCCAAGAGGGCAGAGACGTaGTCCTCGCTCACGTCGGGAAATTGCTGCCTCAAG +
Preference number: 3 (lower is better)
Translates to: DTSPRRSKRAET*SSLTSGNCCLK
Trigger: CTTGAGGCAGCAATTTCCCGACGTGAGCGAGGATCACGTCTCTGCCCTCTTGGACCTGCGCGGAGACGTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp CTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTaGATCAGAGCCCTTAGGTATTGTAACACCACGGTT +
Preference number: 3 (lower is better)
Translates to: LRSSVPRHTRRP*IRALRYCNTTV
Trigger: AACCGTGGTGTTACAATACCTAAGGGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp AAACCAAGGAAAAGCTCTTTGAGCTGGGCAGCATCCTaGCGAAGTCGCTCAGCCGCCTGGCTCCGCTCGTCC +
Preference number: 3 (lower is better)
Translates to: KPRKSSLSWAAS*RSRSAAWLRSS
Trigger: GGACGAGCGGAGCCAGGCGGCTGAGCGACTTCGGCAGGATGCTGCCCAGCTCAAAGAGCTTTTCCTTGGTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CAA 90 bp GGGCAGAGCGGAGAACAGGGGCTGGAGCTCAACCTGCAGTACTTCCAAAACCAGCTAGCCCCTGGAAGATaGGCAACTCCAGACCTCCTA +
Preference number: 3 (lower is better)
Translates to: GQSGEQGLELNLQYFQNQLAPGR*ATPDLL
Trigger: TAGGAGGTCTGGAGTTGCCAATCTTCCAGGGGCTAG...CTGGTTTTGGAAGTACTGCAGGTTGAGCTCCAGCCCCTGTTCTCCGCTCTGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp CCAGGCTTCCGTACGCGCCAGAAGTCCTGGCAGAAGTaGGACGTCTGCTCACACACACCATCTAGCAACTCA +
Preference number: 3 (lower is better)
Translates to: PGFRTRQKSWQK*DVCSHTPSSNS
Trigger: TGAGTTGCTAGATGGTGTGTGTGAGCAGACGTCGCACTTCTGCCAGGACTTCTGGCGCGTACGGAAGCCTGG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp AGACCTCCTAGGGGTGCCAGTGTCTCCTCTTTCAGCTaGTCTAGTTCCCGCAGGCTCACATATGCCTCCAAG +
Preference number: 3 (lower is better)
Translates to: RPPRGASVSSFS*SSSRRLTYASK
Trigger: CTTGGAGGCATATGTGAGCCTGCGGGAACTAGAGCAGCTGAAAGAGGAGACACTGGCACCCCTAGGAGGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 72 bp GGACCGAGACCGAAGATCTCAGTGCTGATTGGTGGTTaGAGGCAGACAGTAGGTAGGGCACATAGTGAGGGG +
Preference number: 3 (lower is better)
Translates to: GPRPKISVLIGG*RQTVGRAHSEG
Trigger: CCCCTCACTATGTGCCCTACCTACTGTCTGCCTTCAACCACCAATCAGCACTGAGATCTTCGGTCTCGGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 72 bp TGCTCAATGTTCTCTGAGGTCAAGAGGGGCTCTAGCTaGGACACATCAGCCTCAGGCCCCAGTTCCAAGTTC +
Preference number: 3 (lower is better)
Translates to: CSMFSEVKRGSS*DTSASGPSSKF
Trigger: GAACTTGGAACTGGGGCCTGAGGCTGATGTGTCCCAGCTAGAGCCCCTCTTGACCTCAGAGAACATTGAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp CTCAAGAATGCGCCCAGCTCTGACACTGCCATGTTATaGGCCCGCCGATGCAATGAGTCACTAATCAGGTTG +
Preference number: 3 (lower is better)
Translates to: LKNAPSSDTAML*ARRCNESLIRL
Trigger: CAACCTGATTAGTGACTCATTGCATCGGCGGGCGCATAACATGGCAGTGTCAGAGCTGGGCGCATTCTTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR GCA 72 bp CGTACGCGCCAGAAGTCCTGGCAGAAGTGCGACGTCTaGTCACACACACCATCTAGCAACTCAGAACTCAAT +
Preference number: 3 (lower is better)
Translates to: RTRQKSWQKCDV*SHTPSSNSELN
Trigger: ATTGAGTTCTGAGTTGCTAGATGGTGTGTGTGAGCAGACGTCGCACTTCTGCCAGGACTTCTGGCGCGTACG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR-3UTR CAA 90 bp GTACCGCGGCACACTAGGCGGCCCTGCATCAGAGCCCTTAGGTATTGTAACACCAATCAGGTTGGTCACTaGAATGTTTTCAGCCAGGAT +
Preference number: 3 (lower is better)
Translates to: VPRHTRRPCIRALRYCNTNQVGH*NVFSQD
Trigger: ATCCTGGCTGAAAACATTCAAGTGACCAACCTGATT...GGTGTTACAATACCTAAGGGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR TCA 72 bp ACTGCTTGTAGCCTTGGCAACAACCGAGTCAGGATCTaGAGTTGTTTGTGCTGGACAACACATTCCCTCAGG +
Preference number: 3 (lower is better)
Translates to: TACSLGNNRVRI*SCLCWTTHSLR
Trigger: CCTGAGGGAATGTGTTGTCCAGCACAAACAACTTCAGATCCTGACTCGGTTGTTGCCAAGGCTACAAGCAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CCA 72 bp TTGAATGTTTTCAGCCAGGATCTGCAGGACAATGGCTaGCATTGGGGAGTGGTAGAAACCGGATGGATCTGT +
Preference number: 3 (lower is better)
Translates to: LNVFSQDLQDNG*HWGVVETGWIC
Trigger: ACAGATCCATCCGGTTTCTACCACTCCCCAATGCCAGCCATTGTCCTGCAGATCCTGGCTGAAAACATTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 72 bp GCCACCTCGAGGCCAAGCAGTGTGGGGTCGTGGAGGTaGAGCAGTTCCCTCAGCGCGAGCAGGACGGGCGCG +
Preference number: 4 (lower is better)
Translates to: ATSRPSSVGSWR*SSSLSASRTGA
Trigger: CGCGCCCGTCCTGCTCGCGCTGAGGGAACTGCTCAACCTCCACGACCCCACACTGCTTGGCCTCGAGGTGGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
CDS-3UTR GCA 90 bp CCTGGCTCCGCTCGTCCGTACCGCGGCACACTAGGCGGCCCTGCATCAGAGCCCAGGGCTCGGGTCAGCTaGCACACACCAGTCTGCACA +
Preference number: 4 (lower is better)
Translates to: PGSARPYRGTLGGPASEPRARVS*HTPVCT
Trigger: TGTGCAGACTGGTGTGTGGCAGCTGACCCGAGCCCT...GGGCTCTGATGCAGGGCCGCCTAGTGTGCCGCGGTACGGACGAGCGGAGCCAGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 72 bp TTGGTGGGCAGCAGGGTGCCACCAATGCCTCCGCTGTaGCCAACTCGGCGGGCAAGGCTACCTGCAGAGCCT +
Preference number: 4 (lower is better)
Translates to: LVGSRVPPMPPL*PTRRARLPAEP
Trigger: AGGCTCTGCAGGTAGCCTTGCCCGCCGAGTTGGCAACAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCAA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 72 bp GCAGGGTGTGGGCCCATAGCTCAACCACACGGTAGCTaGGTGGGCAGCAGGGTGCCACCAATGCCTCCGCTG +
Preference number: 4 (lower is better)
Translates to: AGCGPIAQPHGS*VGSRVPPMPPL
Trigger: CAGCGGAGGCATTGGTGGCACCCTGCTGCCCACCAAGCTACCGTGTGGTTGAGCTATGGGCCCACACCCTGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 72 bp GAGGGCAGAGACGTGATCCTCGCTCACGTCGGGAAATaGCTGCCTCAAGCCTGCCACCTCGAGGCCAAGCAG +
Preference number: 4 (lower is better)
Translates to: EGRDVILAHVGK*LPQACHLEAKQ
Trigger: CTGCTTGGCCTCGAGGTGGCAGGCTTGAGGCAGCAATTTCCCGACGTGAGCGAGGATCACGTCTCTGCCCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
3UTR CAA 72 bp GCGCTCTCTTCCAGGCCCAAACCAAGGAAAAGCTCTTaGAGCTGGGCAGCATCCTGCCGAAGTCGCTCAGCC +
Preference number: 4 (lower is better)
Translates to: ALSSRPKPRKSS*SWAASCRSRSA
Trigger: GGCTGAGCGACTTCGGCAGGATGCTGCCCAGCTCAAAGAGCTTTTCCTTGGTTTGGGCCTGGAAGAGAGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
CDS TCA 90 bp GCCTGGTCAGCTGCTCTGGCCGGTAGAAGATGCCTGAAGCCCACTTaGGTGCTGCACCCCGAGCCAGCTGTTCGGCCCTCTCCTGCTCTG +
Preference number: 5 (lower is better)
Translates to: AWSAALAGRRCLKPT*VLHPEPAVRPSPAL
Trigger: CAGAGCAGGAGAGGGCCGAACAGCTGGCTCGGGGTGCAGCACTCAAGTGGGCTTCAGGCATCTTCTACCGGCCAGAGCAGCTGACCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS TCA 90 bp GTACTGGCCCAGCCTGGTCAGCTGCTCTGGCCGGTAGAAGATGCCTaGAGCCCACTTGAGTGCTGCACCCCGAGCCAGCTGTTCGGCCCT +
Preference number: 5 (lower is better)
Translates to: VLAQPGQLLWPVEDA*SPLECCTPSQLFGP
Trigger: AGGGCCGAACAGCTGGCTCGGGGTGCAGCACTCAAGTGGGCTTCAGGCATCTTCTACCGGCCAGAGCAGCTGACCAGGCTGGGCCAGTAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS TCA 90 bp AGGGGTTCCAGGGTTTGTGAGGTCCGAGACAAACCCTTTAGTAAGTaGTGGGCCTGGCTCAAAGCTTCACGAGTTCCCTGCACAGCCTCG +
Preference number: 5 (lower is better)
Translates to: RGSRVCEVRDKPFSK*WAWLKASRVPCTAS
Trigger: CGAGGCTGTGCAGGGAACTCGTGAAGCTTTGAGCCAGGCCCATCACTTACTAAAGGGTTTGTCTCGGACCTCACAAACCCTGGAACCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS TCA 90 bp CTGCCACACACCAGTCTGCACACCTTCCAGGTAGGACTGCACCACTaGCTTAATTCTTGCTTCCAGGGAATAGTTACGCTGTATTTCACG +
Preference number: 5 (lower is better)
Translates to: LPHTSLHTFQVGLHH*LNSCFQGIVTLYFT
Trigger: CGTGAAATACAGCGTAACTATTCCCTGGAAGCAAGAATTAAGTCAGTGGTGCAGTCCTACCTGGAAGGTGTGCAGACTGGTGTGTGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS GCA 72 bp AGTGCTGCACCCCGAGCCAGCTGTTCGGCCCTCTCCTaGTCTGGCCACTCAGGCCTTGGGCAGGAAGATCCA +
Preference number: 6 (lower is better)
Translates to: SAAPRASCSALS*SGHSGLGQEDP
Trigger: TGGATCTTCCTGCCCAAGGCCTGAGTGGCCAGAGCAGGAGAGGGCCGAACAGCTGGCTCGGGGTGCAGCACT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS TCA 72 bp GCTGCTCTGGCCGGTAGAAGATGCCTGAAGCCCACTTaGGTGCTGCACCCCGAGCCAGCTGTTCGGCCCTCT +
Preference number: 6 (lower is better)
Translates to: AALAGRRCLKPT*VLHPEPAVRPS
Trigger: AGAGGGCCGAACAGCTGGCTCGGGGTGCAGCACTCAAGTGGGCTTCAGGCATCTTCTACCGGCCAGAGCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS TCA 72 bp CAGCCTGGTCAGCTGCTCTGGCCGGTAGAAGATGCCTaGAGCCCACTTGAGTGCTGCACCCCGAGCCAGCTG +
Preference number: 6 (lower is better)
Translates to: QPGQLLWPVEDA*SPLECCTPSQL
Trigger: CAGCTGGCTCGGGGTGCAGCACTCAAGTGGGCTTCAGGCATCTTCTACCGGCCAGAGCAGCTGACCAGGCTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS CCA 72 bp TACGCTGTATTTCACGGCTTCGGTACTGGCCCAGCCTaGTCAGCTGCTCTGGCCGGTAGAAGATGCCTGAAG +
Preference number: 6 (lower is better)
Translates to: YAVFHGFGTGPA*SAALAGRRCLK
Trigger: CTTCAGGCATCTTCTACCGGCCAGAGCAGCTGACCAGGCTGGGCCAGTACCGAAGCCGTGAAATACAGCGTA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4
CDS TCA 72 bp ACCAGTCTGCACACCTTCCAGGTAGGACTGCACCACTaGCAGGACGAAGTGTGGGCTGTATCTTGCTGTCCA +
Preference number: 6 (lower is better)
Translates to: TSLHTFQVGLHH*QDEVWAVSCCP
Trigger: TGGACAGCAAGATACAGCCCACACTTCGTCCTGTCAGTGGTGCAGTCCTACCTGGAAGGTGTGCAGACTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000212777.2
CDS TCA 72 bp ACCAGTCTGCACACCTTCCAGGTAGGACTGCACCACTaGCTTAATTCTTGCTTCCAGGGAATAGTTACGCTG +
Preference number: 6 (lower is better)
Translates to: TSLHTFQVGLHH*LNSCFQGIVTL
Trigger: CAGCGTAACTATTCCCTGGAAGCAAGAATTAAGTCAGTGGTGCAGTCCTACCTGGAAGGTGTGCAGACTGGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000057855.4