RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EXOC1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036435

Ensembl transcript IDs: ENSMUST00000049469.13, ENSMUST00000087133.11, ENSMUST00000113493.8, ENSMUST00000134521.2

Found 301 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTCCAAGTTCCATGATTTGTGAGCAACTGGCACATAGTGAGTGCTaGGGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACAC +
Preference number: 1 (lower is better)
Translates to: FPSSMICEQLAHSEC*GTPTVPLRTAARKH
Trigger: GTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCCTCAGCACTCACTATGTGCCAGTTGCTCACAAATCATGGAACTTGGAAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR CCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAGTCCTGCCTGGTCCCTaGAAAGTGCTGAAGGCTTTT +
Preference number: 2 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAVLPGP*KVLKAF
Trigger: AAAAGCCTTCAGCACTTTCCAGGGACCAGGCAGGAC...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR CCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGCAAAATGTCCTGCCTaGTCCCTGGAAAGTGCTGAA +
Preference number: 2 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPAKCPA*SLESAE
Trigger: TTCAGCACTTTCCAGGGACCAGGCAGGACATTTTGC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR TCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGTCCCTGGAAAGTGCTaGAGGCTTTTCATGATGAGA +
Preference number: 2 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPVPGKC*RLFMMR
Trigger: TCTCATCATGAAAAGCCTTCAGCACTTTCCAGGGAC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR GCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCATCTTTCCGTAGTGTTTaGTGGACTGAGAATGCATGC +
Preference number: 2 (lower is better)
Translates to: GTPTVPLRTAARKHKKLASFRSV*WTENAC
Trigger: GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGA...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR GCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTCTTTCCGTAGTGTTTaGTGGACTGAGAATGCATGC +
Preference number: 2 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLSFRSV*WTENAC
Trigger: GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGA...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR TCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGTCCCTGGAAAGTGCTaGAGGCTTTTCATGATGAGA +
Preference number: 2 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKVPGKC*RLFMMR
Trigger: TCTCATCATGAAAAGCCTTCAGCACTTTCCAGGGAC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR TCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAGCTTTCCAAGTTCCATaGTTTGTGAGCAACTGGCAC +
Preference number: 2 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTAFQVP*FVSNWH
Trigger: GTGCCAGTTGCTCACAAATCATGGAACTTGGAAAGC...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR CCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCACTTAAGTGCATCACCTaGATGTCAAATAAAACCGAG +
Preference number: 2 (lower is better)
Translates to: GTPTVPLRTAARKHKKLALKCIT*MSNKTE
Trigger: CTCGGTTTTATTTGACATCCAGGTGATGCACTTAAG...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR CCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAATTCCGTAGTGTTTGCTaGACTGAGAATGCATGCTCA +
Preference number: 2 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKFRSVC*TENACS
Trigger: TGAGCATGCATTCTCAGTCCAGCAAACACTACGGAA...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR CAA 90 bp AGACGTTTAGTAACAGAAACGCTTGAATCTGGCTCCTCAGAGCACTaGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCT +
Preference number: 2 (lower is better)
Translates to: RRLVTETLESGSSEH*LTLSVVFAGLRMHA
Trigger: AGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCCAGATTCAAGCGTTTCTGTTACTAAACGTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR CCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACACTTAAGTGCATCACCTaGATGTCAAATAAAACCGAG +
Preference number: 2 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTLKCIT*MSNKTE
Trigger: CTCGGTTTTATTTGACATCCAGGTGATGCACTTAAG...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR TCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGCTTTCCAAGTTCCATaGTTTGTGAGCAACTGGCAC +
Preference number: 2 (lower is better)
Translates to: YTESHNPYNPGWWLITTSAFQVP*FVSNWH
Trigger: GTGCCAGTTGCTCACAAATCATGGAACTTGGAAAGC...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR-3UTR GCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGACAAAACAATTCTGTaGAATGCTTTCCAAGTTCCA +
Preference number: 2 (lower is better)
Translates to: YTESHNPYNPGWWLITTSDKTIL*NAFQVP
Trigger: TGGAACTTGGAAAGCATTGCACAGAATTGTTTTGTC...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR TCA 72 bp TCCATGATTTGTGAGCAACTGGCACATAGTGAGTGCTaGGGAACTCCCACTGTTCCACTGAGGACAGCCGCT +
Preference number: 3 (lower is better)
Translates to: SMICEQLAHSEC*GTPTVPLRTAA
Trigger: AGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCCTCAGCACTCACTATGTGCCAGTTGCTCACAAATCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR TCA 72 bp CAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTaGTTACCACATCAGATCCCCTGCCCATCCATATGC +
Preference number: 3 (lower is better)
Translates to: QSHIILTIQAGG*LPHQIPCPSIC
Trigger: GCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR GCA 72 bp CTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTaGTGGACTGAGAATGCATGCTCACTTCTTTCTCCT +
Preference number: 3 (lower is better)
Translates to: LLRALAHSFRSV*WTENACSLLSP
Trigger: AGGAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
3UTR CCA 72 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTaGACTGAGAATGCATGCTCACTTCTTTCTCCTCTT +
Preference number: 3 (lower is better)
Translates to: LRALAHSFRSVC*TENACSLLSPL
Trigger: AAGAGGAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGGGCGTCAGCAGCGTTaGTGCAGGCCTCGATGCCTC +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPGRQQR*CRPRCL
Trigger: GAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGCAACGTTCATGCACTaGAGCAGGGCGTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPATFMH*SRASAA
Trigger: CGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAGGGCGTCAGCAGCGTTaGTGCAGGCCTCGATGCCTC +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTGRQQR*CRPRCL
Trigger: GAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCC...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGCACGGGGCGTTCAGTaGTCACTGTGGCACACAGAA +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLARGVQ*SLWHTE
Trigger: TTCTGTGTGCCACAGTGACCACTGAACGCCCCGTGC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGCACGGGGCGTTCAGTaGTCACTGTGGCACACAGAA +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPARGVQ*SLWHTE
Trigger: TTCTGTGTGCCACAGTGACCACTGAACGCCCCGTGC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCACCTCCCGCTACACTCTaGTTCTCTCCGCTTGGAACA +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPPPATL*FSPLGT
Trigger: TGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGG...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGAGGCCATGATTGACTaGATGTTGGCCCCATCGAGC +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLEAMID*MLAPSS
Trigger: GCTCGATGGGGCCAACATTCAGTCAATCATGGCCTC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAGAAAGTTCTCCATCATaGCCACATCCCTGGGCGTCT +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAESSPS*PHPWAS
Trigger: AGACGCCCAGGGATGTGGTCATGATGGAGAACTTTC...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCAAGCGCTGCTGCTGCTaGTTGACGGCCAGGAGCATG +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACKRCCC*LTARSM
Trigger: CATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTT...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATCTCAGCCGTGCTGCTaGCCACCCACTTATAGACCT +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPSQPCC*PPTYRP
Trigger: AGGTCTATAAGTGGGTGGCCAGCAGCACGGCTGAGA...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGCCACTCCATCAGCTTaGCATAGCGGAGCAAGTCTC +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLATPSA*HSGASL
Trigger: GAGACTTGCTCCGCTATGCCAAGCTGATGGAGTGGC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGGAGGCCATGATTGACTaGATGTTGGCCCCATCGAGC +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMEAMID*MLAPSS
Trigger: GCTCGATGGGGCCAACATTCAGTCAATCATGGCCTC...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGAGTGCCACACCACCTaGAGTAAGTTCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPECHTT*SKFSSS
Trigger: TGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCATCATCTTGCATGGAGTaGCACACCACCTGCAGTAAG +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLASSCME*HTTCSK
Trigger: CTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGA...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGTCTCAGCCGTGCTGCTaGCCACCCACTTATAGACCT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMSQPCC*PPTYRP
Trigger: AGGTCTATAAGTGGGTGGCCAGCAGCACGGCTGAGA...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCATCCCTGGGCGTCTTCTaGCTCTCATTTGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLASLGVF*LSFATF
Trigger: GAAAGTAGCAAATGAGAGCCAGAAGACGCCCAGGGA...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACATCCTCCCGAATGCCCTaGGCTACTCGAGCTTCAACG +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTSSRMP*ATRAST
Trigger: CGTTGAAGCTCGAGTAGCCCAGGGCATTCGGGAGGA...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCCCTCCCGCTACACTCTaGTTCTCTCCGCTTGGAACA +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACPPATL*FSPLGT
Trigger: TGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGG...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAGAACAAAAACATTGTTaGGATGGCTGGCCAGTCTCC +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAEQKHC*DGWPVS
Trigger: GGAGACTGGCCAGCCATCTCAACAATGTTTTTGTTC...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGTGCTGAGCAAGAGTTaGACTCTGATCATGACCCTG +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLVLSKS*TLIMTL
Trigger: CAGGGTCATGATCAGAGTTCAACTCTTGCTCAGCAC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGTGCTGAGCAAGAGTTaGACTCTGATCATGACCCTG +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPVLSKS*TLIMTL
Trigger: CAGGGTCATGATCAGAGTTCAACTCTTGCTCAGCAC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAGCCTCATCCAGCAACTaGATCAGGGTGTTCACTTGT +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPASSSN*IRVFTC
Trigger: ACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGC...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCGCAACGTTCATGCACTaGAGCAGGGCGTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLATFMH*SRASAA
Trigger: CGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGC...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGGCAACGTTCATGCACTaGAGCAGGGCGTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLATFMH*SRASAA
Trigger: CGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGC...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCAAGCGCTGCTGCTGCTaGTTGACGGCCAGGAGCATG +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLKRCCC*LTARSM
Trigger: CATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGAAGCGCTGCTGCTGCTaGTTGACGGCCAGGAGCATG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLKRCCC*LTARSM
Trigger: CATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTT...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCAAACAGGGAGCAGGGTaGCAGAACTGTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACKQGAG*QNCAAV
Trigger: TACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTT...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTCATCTTGCATGGAGTaGCACACCACCTGCAGTAAG +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLSSCME*HTTCSK
Trigger: CTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGA...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCACGTATAAACTCATCTTaGATGGAGTGCCACACCACC +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLARINSS*MECHTT
Trigger: GGTGGTGTGGCACTCCATGCAAGATGAGTTTATACG...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAGCCACTCCATCAGCTTaGCATAGCGGAGCAAGTCTC +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTATPSA*HSGASL
Trigger: GAGACTTGCTCCGCTATGCCAAGCTGATGGAGTGGC...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTTCCTCCCGAATGCCCTaGGCTACTCGAGCTTCAACG +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLSSRMP*ATRAST
Trigger: CGTTGAAGCTCGAGTAGCCCAGGGCATTCGGGAGGA...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTCCTCCCGAATGCCCTaGGCTACTCGAGCTTCAACG +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFSSRMP*ATRAST
Trigger: CGTTGAAGCTCGAGTAGCCCAGGGCATTCGGGAGGA...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAGTTCATCATTTGGTGTaGAGATATCTCTCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAVHHLV*RYLSAA
Trigger: CGCTGCAGAGAGATATCTTCACACCAAATGATGAAC...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACATCCAAATGCAGGAGATaGAGGCGTTCTTCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTSKCRR*RRSSQP
Trigger: CGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGA...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCGACTGCCCGAGCTCTaGACACTGAGTTTATTCAGA +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMRLPEL*TLSLFR
Trigger: TCTGAATAAACTCAGTGTTCAGAGCTCGGGCAGTCG...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAGGCGTTCAGCATTTTTaGAAATTGATTCTGCGAGCC +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAGVQHF*KLILRA
Trigger: GGCTCGCAGAATCAATTTTCAAAAATGCTGAACGCC...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCGAAAGTTCTCCATCATaGCCACATCCCTGGGCGTCT +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACESSPS*PHPWAS
Trigger: AGACGCCCAGGGATGTGGTCATGATGGAGAACTTTC...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGATGGATCAGGTGGTTaGTCTCAGAGATCTGATCCA +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLDGSGG*SQRSDP
Trigger: TGGATCAGATCTCTGAGAGCAACCACCTGATCCATC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAATGGTGCAGGCCTCGATaGCTCGGGAAGAAACAAGAT +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKWCRPR*LGKKQD
Trigger: ATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCA...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTGGTGCAGGCCTCGATaGCTCGGGAAGAAACAAGAT +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACWCRPR*LGKKQD
Trigger: ATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCA...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGTATGAAGTCCTGTTCTaGCAGACACAGTGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMYEVLF*QTQWLQ
Trigger: CTGGAGCCACTGTGTCTGGCAGAACAGGACTTCATA...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCAAACAGGGAGCAGGGTaGCAGAACTGTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFKQGAG*QNCAAV
Trigger: TACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTT...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCACGTATAAACTCATCTTaGATGGAGTGCCACACCACC +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPRINSS*MECHTT
Trigger: GGTGGTGTGGCACTCCATGCAAGATGAGTTTATACG...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAAGTGGGACTGTGCGATaGTGGAGCAATAATCCAGAA +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPSGTVR*WSNNPE
Trigger: TTCTGGATTATTGCTCCAGCATCGCACAGTCCCACT...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGAGTTTCAGTTCAATCTaGTCCACCTCCGTTAGCGCC +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMSFSSI*STSVSA
Trigger: GGCGCTAACGGAGGTGGACCAGATTGAACTGAAACT...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAAACATTGTTGAGATaGCTGGCCAGTCTCCGGGCG +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTKTLLR*LASLRA
Trigger: CGCCCGGAGACTGGCCAGCCATCTCAACAATGTTTT...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCCTCCCGCTACACTCTaGTTCTCTCCGCTTGGAACA +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLPPATL*FSPLGT
Trigger: TGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGTTTCTCAGAGGCCATaGTTGACTGAATGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKVSQRP*LTECWP
Trigger: GGGCCAACATTCAGTCAATCATGGCCTCTGAGAAAC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAGTGCTGAGCAAGAGTTaGACTCTGATCATGACCCTG +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTVLSKS*TLIMTL
Trigger: CAGGGTCATGATCAGAGTTCAACTCTTGCTCAGCAC...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACACGACTGCCCGAGCTCTaGACACTGAGTTTATTCAGA +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTRLPEL*TLSLFR
Trigger: TCTGAATAAACTCAGTGTTCAGAGCTCGGGCAGTCG...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCCGTGGTGACTCATTTTaGCCAGCATGTACAGGGAGT +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACRGDSF*PACTGS
Trigger: ACTCCCTGTACATGCTGGTCAAAATGAGTCACCACG...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTGAAAGTTCTCCATCATaGCCACATCCCTGGGCGTCT +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLESSPS*PHPWAS
Trigger: AGACGCCCAGGGATGTGGTCATGATGGAGAACTTTC...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGTGCAGACATTCACGATaGTCAGCAGGCGTTCATCAT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMCRHSR*SAGVHH
Trigger: ATGATGAACGCCTGCTGAGCATCGTGAATGTCTGCA...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGCCTCATCCAGCAACTaGATCAGGGTGTTCACTTGT +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKASSSN*IRVFTC
Trigger: ACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTGGTGCAGGCCTCGATaGCTCGGGAAGAAACAAGAT +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFWCRPR*LGKKQD
Trigger: ATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCA...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCAAACAGGGAGCAGGGTaGCAGAACTGTGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLKQGAG*QNCAAV
Trigger: TACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGAGTGCCACACCACCTaGAGTAAGTTCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFECHTT*SKFSSS
Trigger: TGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGAGTGGGACTGTGCGATaGTGGAGCAATAATCCAGAA +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMSGTVR*WSNNPE
Trigger: TTCTGGATTATTGCTCCAGCATCGCACAGTCCCACT...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAAGTTTCAGTTCAATCTaGTCCACCTCCGTTAGCGCC +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKSFSSI*STSVSA
Trigger: GGCGCTAACGGAGGTGGACCAGATTGAACTGAAACT...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAATTCCCAGAGCTTCCATaGAGACTCTCTGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKFPELP*RLSVSC
Trigger: GCAGGAAACAGAGAGTCTCCATGGAAGCTCTGGGAA...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTCCAAATGCAGGAGATaGAGGCGTTCTTCTCAGCCG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLSKCRR*RRSSQP
Trigger: CGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGTTTCTCAGAGGCCATaGTTGACTGAATGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFVSQRP*LTECWP
Trigger: GGGCCAACATTCAGTCAATCATGGCCTCTGAGAAAC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCGAACAAAAACATTGTTaGGATGGCTGGCCAGTCTCC +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACEQKHC*DGWPVS
Trigger: GGAGACTGGCCAGCCATCTCAACAATGTTTTTGTTC...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGAACAAAAACATTGTTaGGATGGCTGGCCAGTCTCC +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKEQKHC*DGWPVS
Trigger: GGAGACTGGCCAGCCATCTCAACAATGTTTTTGTTC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGGGCGTTCAGCATTTTTaGAAATTGATTCTGCGAGCC +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMGVQHF*KLILRA
Trigger: GGCTCGCAGAATCAATTTTCAAAAATGCTGAACGCC...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGCTCAGCTTCAAGACATaGGATTTTCAGACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLLSFKT*DFQTRK
Trigger: CTTTCTCGTCTGAAAATCTCATGTCTTGAAGCTGAG...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGTCCTAAAGAGTAAATaGCGTAGGACTGAAGGTGAT +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLVLKSK*RRTEGD
Trigger: ATCACCTTCAGTCCTACGTCATTTACTCTTTAGGAC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGCCTCATCCAGCAACTaGATCAGGGTGTTCACTTGT +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFASSSN*IRVFTC
Trigger: ACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCGATGGATCAGGTGGTTaGTCTCAGAGATCTGATCCA +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACDGSGG*SQRSDP
Trigger: TGGATCAGATCTCTGAGAGCAACCACCTGATCCATC...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGATGGATCAGGTGGTTaGTCTCAGAGATCTGATCCA +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKDGSGG*SQRSDP
Trigger: TGGATCAGATCTCTGAGAGCAACCACCTGATCCATC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCGAGTGCCACACCACCTaGAGTAAGTTCTCCTCCTCA +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLECHTT*SKFSSS
Trigger: TGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTC...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGATCAACCCCTCGAAGTaGTTGTACTGGCGTATAAAC +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMINPSK*LYWRIN
Trigger: GTTTATACGCCAGTACAAGCACTTCGAGGGGTTGAT...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGCCTTTATATGACCTTTaGCCAAGTCCATGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLPLYDL*PSPCGS
Trigger: TGAACCACATGGACTTGGCCAAAGGTCATATAAAGG...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCAAAACATTGTTGAGATaGCTGGCCAGTCTCCGGGCG +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLKTLLR*LASLRA
Trigger: CGCCCGGAGACTGGCCAGCCATCTCAACAATGTTTT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAAGATCTTATCAAACTTaGTTCTGTCAGCCACATCGA +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLARSYQT*FCQPHR
Trigger: TCGATGTGGCTGACAGAACCAAGTTTGATAAGATCT...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTTCCCTGGGCGTCTTCTaGCTCTCATTTGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLSLGVF*LSFATF
Trigger: GAAAGTAGCAAATGAGAGCCAGAAGACGCCCAGGGA...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCCGTGTACTTCTGCTTaGCTTCTTTCTTCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMPCTSA*LLSSQL
Trigger: AAGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGG...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGCTGATTCTCTCCGCTTaGAACAGATTCTTCTGTAAC +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLLILSA*NRFFCN
Trigger: GTTACAGAAGAATCTGTTCCAAGCGGAGAGAATCAG...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113493.8
3UTR CAA 72 bp GTAACAGAAACGCTTGAATCTGGCTCCTCAGAGCACTaGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGA +
Preference number: 4 (lower is better)
Translates to: VTETLESGSSEH*LTLSVVFAGLR
Trigger: TCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCCAGATTCAAGCGTTTCTGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGTTCATCATTTGGTGTaGAGATATCTCTCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKVHHLV*RYLSAA
Trigger: CGCTGCAGAGAGATATCTTCACACCAAATGATGAAC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCGTTTCTCAGAGGCCATaGTTGACTGAATGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLVSQRP*LTECWP
Trigger: GGGCCAACATTCAGTCAATCATGGCCTCTGAGAAAC...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCGACTGCCCGAGCTCTaGACACTGAGTTTATTCAGA +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLRLPEL*TLSLFR
Trigger: TCTGAATAAACTCAGTGTTCAGAGCTCGGGCAGTCG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGGATGCAGACATGTTTTaGTGCTGCTGTAGTTTGAAA +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLDADMF*CCCSLK
Trigger: TTTCAAACTACAGCAGCATCAAAACATGTCTGCATC...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCATGCAACGGAATATTTTaGTCATCATTTGGCGAATCA +
Preference number: 4 (lower is better)
Translates to: GTPTVPLRTAARKHKKLACNGIF*SSFGES
Trigger: TGATTCGCCAAATGATGATCAAAATATTCCGTTGCA...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGCGTGGTGACTCATTTTaGCCAGCATGTACAGGGAGT +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLRGDSF*PACTGS
Trigger: ACTCCCTGTACATGCTGGTCAAAATGAGTCACCACG...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGGTCCTAAAGAGTAAATaGCGTAGGACTGAAGGTGAT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMVLKSK*RRTEGD
Trigger: ATCACCTTCAGTCCTACGTCATTTACTCTTTAGGAC...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACATCTCTGTTTCCTGCTTaGCAGCACTTTCTTTTCGAG +
Preference number: 4 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTSLFPA*QHFLFE
Trigger: CTCGAAAAGAAAGTGCTGTCAAGCAGGAAACAGAGA...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCTATGAAGTCCTGTTCTaGCAGACACAGTGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLYEVLF*QTQWLQ
Trigger: CTGGAGCCACTGTGTCTGGCAGAACAGGACTTCATA...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTCATCTTGCATGGAGTaGCACACCACCTGCAGTAAG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLSSCME*HTTCSK
Trigger: CTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCGTATAAACTCATCTTaGATGGAGTGCCACACCACC +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFRINSS*MECHTT
Trigger: GGTGGTGTGGCACTCCATGCAAGATGAGTTTATACG...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCATCAACCCCTCGAAGTaGTTGTACTGGCGTATAAAC +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACINPSK*LYWRIN
Trigger: GTTTATACGCCAGTACAAGCACTTCGAGGGGTTGAT...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTAGTGGGACTGTGCGATaGTGGAGCAATAATCCAGAA +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLSGTVR*WSNNPE
Trigger: TTCTGGATTATTGCTCCAGCATCGCACAGTCCCACT...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGTTCAGTGGTCACTGTaGCACACAGAAAACAGTTCT +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKVQWSL*HTENSS
Trigger: AGAACTGTTTTCTGTGTGCCACAGTGACCACTGAAC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCTCCCTGGGCGTCTTCTaGCTCTCATTTGCTACTTTC +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLSLGVF*LSFATF
Trigger: GAAAGTAGCAAATGAGAGCCAGAAGACGCCCAGGGA...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGCTTCACCTCCTTGCCTaGATACTCTTTAATGACTTT +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLLHLLA*ILFNDF
Trigger: AAAGTCATTAAAGAGTATCCAGGCAAGGAGGTGAAG...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTGGGACTGTGCGATGCTaGAGCAATAATCCAGAATGT +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLGTVRC*SNNPEC
Trigger: ACATTCTGGATTATTGCTCCAGCATCGCACAGTCCC...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGGGACTGTGCGATGCTaGAGCAATAATCCAGAATGT +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFGTVRC*SNNPEC
Trigger: ACATTCTGGATTATTGCTCCAGCATCGCACAGTCCC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTTCCCAGAGCTTCCATaGAGACTCTCTGTTTCCTGC +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLFPELP*RLSVSC
Trigger: GCAGGAAACAGAGAGTCTCCATGGAAGCTCTGGGAA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGGATGCAGACATGTTTTaGTGCTGCTGTAGTTTGAAA +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMDADMF*CCCSLK
Trigger: TTTCAAACTACAGCAGCATCAAAACATGTCTGCATC...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATGCAACGGAATATTTTaGTCATCATTTGGCGAATCA +
Preference number: 4 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPCNGIF*SSFGES
Trigger: TGATTCGCCAAATGATGATCAAAATATTCCGTTGCA...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCACGCCTTCAAAGAAATaGTTTAGCTTTTCAAGGGGC +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACTPSKK*FSFSRG
Trigger: GCCCCTTGAAAAGCTAAATCATTTCTTTGAAGGCGT...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTGCAGACATTCACGATaGTCAGCAGGCGTTCATCAT +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLCRHSR*SAGVHH
Trigger: ATGATGAACGCCTGCTGAGCATCGTGAATGTCTGCA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGCTTCTGGCTCTCATTTaGTACTTTCTCCACATTAAT +
Preference number: 4 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLLLALI*YFLHIN
Trigger: ATTAATGTGGAGAAAGTAGCAAATGAGAGCCAGAAG...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACAGGCGTTCATCATTTaGTGTGAAGATATCTCTCTG +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKQAFII*CEDISL
Trigger: CAGAGAGATATCTTCACACCAAATGATGAACGCCTG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTGTTCAGTGGTCACTGTaGCACACAGAAAACAGTTCT +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLVQWSL*HTENSS
Trigger: AGAACTGTTTTCTGTGTGCCACAGTGACCACTGAAC...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCTTGCATTTAACTCTTaGTACTCATCTACCGCTTCT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMLAFNS*YSSTAS
Trigger: AGAAGCGGTAGATGAGTACCAAGAGTTAAATGCAAG...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACCTTTATATGACCTTTaGCCAAGTCCATGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKPLYDL*PSPCGS
Trigger: TGAACCACATGGACTTGGCCAAAGGTCATATAAAGG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCGTGTACTTCTGCTTaGCTTCTTTCTTCTCAGCTT +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLPCTSA*LLSSQL
Trigger: AAGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGG...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCTTCACCTCCTTGCCTaGATACTCTTTAATGACTTT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMLHLLA*ILFNDF
Trigger: AAAGTCATTAAAGAGTATCCAGGCAAGGAGGTGAAG...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCGGCGTTCAGCATTTTTaGAAATTGATTCTGCGAGCC +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLGVQHF*KLILRA
Trigger: GGCTCGCAGAATCAATTTTCAAAAATGCTGAACGCC...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTCAGCTTCAAGACATaGGATTTTCAGACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLLSFKT*DFQTRK
Trigger: CTTTCTCGTCTGAAAATCTCATGTCTTGAAGCTGAG...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGTCCTAAAGAGTAAATaGCGTAGGACTGAAGGTGAT +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFVLKSK*RRTEGD
Trigger: ATCACCTTCAGTCCTACGTCATTTACTCTTTAGGAC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTCTCTGTTTCCTGCTTaGCAGCACTTTCTTTTCGAG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLSLFPA*QHFLFE
Trigger: CTCGAAAAGAAAGTGCTGTCAAGCAGGAAACAGAGA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCATATGAAGTCCTGTTCTaGCAGACACAGTGGCTCCAG +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSYEVLF*QTQWLQ
Trigger: CTGGAGCCACTGTGTCTGGCAGAACAGGACTTCATA...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCTTCTGGCTCTCATTTaGTACTTTCTCCACATTAAT +
Preference number: 4 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMLLALI*YFLHIN
Trigger: ATTAATGTGGAGAAAGTAGCAAATGAGAGCCAGAAG...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCATCAACCCCTCGAAGTaGTTGTACTGGCGTATAAAC +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLINPSK*LYWRIN
Trigger: GTTTATACGCCAGTACAAGCACTTCGAGGGGTTGAT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCTGATTCTCTCCGCTTaGAACAGATTCTTCCAAAAG +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFLILSA*NRFFQK
Trigger: CTTTTGGAAGAATCTGTTCCAAGCGGAGAGAATCAG...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
CDS-3UTR CCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAAGTTTCAGTTCAATCTaGTCCACCTCCGTTAGCGCC +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSSFSSI*STSVSA
Trigger: GGCGCTAACGGAGGTGGACCAGATTGAACTGAAACT...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCCTTTATATGACCTTTaGCCAAGTCCATGTGGTTCA +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFPLYDL*PSPCGS
Trigger: TGAACCACATGGACTTGGCCAAAGGTCATATAAAGG...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGAAATGGATGGTGATTaGGTAGAGTCAGTTCAACAG +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFEMDGD*VESVQQ
Trigger: CTGTTGAACTGACTCTACCCAATCACCATCCATTTC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTTCCCAGAGCTTCCATaGAGACCAAACTTCTTGCTT +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLFPELP*RPNFLL
Trigger: AAGCAAGAAGTTTGGTCTCCATGGAAGCTCTGGGAA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049469.13
CDS-3UTR CCA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCAGATCTTATCAAACTTaGTTCTGTCAGCCACATCGA +
Preference number: 4 (lower is better)
Translates to: LRALAHSFRSVCWTENACRSYQT*FCQPHR
Trigger: TCGATGTGGCTGACAGAACCAAGTTTGATAAGATCT...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGATTCAGACTAGAAGTTaGTCCAGTGAGTTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLIQTRS*SSEFPR
Trigger: TCTGGGAAACTCACTGGATCAACTTCTAGTCTGAAT...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGATGCAGACATGTTTTaGTGCTGCTGTAGTTTGAAA +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFDADMF*CCCSLK
Trigger: TTTCAAACTACAGCAGCATCAAAACATGTCTGCATC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAATGCAACGGAATATTTTaGTCATCATTTGGCGAATCA +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKCNGIF*SSFGES
Trigger: TGATTCGCCAAATGATGATCAAAATATTCCGTTGCA...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGCTCAGCTTCAAGACATaGGATTTTCAGACGAGAAAG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLLSFKT*DFQTRK
Trigger: CTTTCTCGTCTGAAAATCTCATGTCTTGAAGCTGAG...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCATGCAGACATTCACGATaGTCAGCAGGCGTTCATCAT +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSCRHSR*SAGVHH
Trigger: ATGATGAACGCCTGCTGAGCATCGTGAATGTCTGCA...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGCAGGCGTTCATCATTTaGTGTGAAGATATCTCTCTG +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLQAFII*CEDISL
Trigger: CAGAGAGATATCTTCACACCAAATGATGAACGCCTG...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCAGGCGTTCATCATTTaGTGTGAAGATATCTCTCTG +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLQAFII*CEDISL
Trigger: CAGAGAGATATCTTCACACCAAATGATGAACGCCTG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCGAAATGGATGGTGATTaGGTAGAGTCAGTTCAACAG +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLEMDGD*VESVQQ
Trigger: CTGTTGAACTGACTCTACCCAATCACCATCCATTTC...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTCACCTCCTTGCCTaGATACTCTTTAATGACTTT +
Preference number: 4 (lower is better)
Translates to: ALAHSFRSVCWTENACSLLHLLA*ILFNDF
Trigger: AAAGTCATTAAAGAGTATCCAGGCAAGGAGGTGAAG...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGGGACTGTGCGATGCTaGAGCAATAATCCAGAATGT +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSGTVRC*SNNPEC
Trigger: ACATTCTGGATTATTGCTCCAGCATCGCACAGTCCC...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGTTCATCATTTGGTGTaGAGATATCTCTCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSVHHLV*RYLSAA
Trigger: CGCTGCAGAGAGATATCTTCACACCAAATGATGAAC...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCAGTTCTTCTTCTTCTTaGCAGCTTTGCAGACATTCA +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLSSSSS*QLCRHS
Trigger: TGAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACAGACGAGAAAGTGTTaGAAAAATATGGTGAAAGTT +
Preference number: 4 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKQTRKC*KNMVKV
Trigger: AACTTTCACCATATTTTTGCAACACTTTCTCGTCTG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCAGTTCTTCCAAAAGCTaGGAGCTAACATTAACAAAG +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFSSSKS*ELTLTK
Trigger: CTTTGTTAATGTTAGCTCGCAGCTTTTGGAAGAACT...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGCTTGCATTTAACTCTTaGTACTCATCTACCGCTTCT +
Preference number: 4 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLLAFNS*YSSTAS
Trigger: AGAAGCGGTAGATGAGTACCAAGAGTTAAATGCAAG...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCTTGCATTTAACTCTTaGTACTCATCTACCGCTTCT +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLLAFNS*YSSTAS
Trigger: AGAAGCGGTAGATGAGTACCAAGAGTTAAATGCAAG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAATTCAGACTAGAAGTTaGTCCAGTGAGTTTCCCAGA +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSIQTRS*SSEFPR
Trigger: TCTGGGAAACTCACTGGATCAACTTCTAGTCTGAAT...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR TCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAACGCCTTCAAAGAAATaGTTTAGCTTTTCAAGGGGC +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSTPSKK*FSFSRG
Trigger: GCCCCTTGAAAAGCTAAATCATTTCTTTGAAGGCGT...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCTTCTGGCTCTCATTTaGTACTTTCTCCACATTAAT +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLLLALI*YFLHIN
Trigger: ATTAATGTGGAGAAAGTAGCAAATGAGAGCCAGAAG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCAGACGAGAAAGTGTTaGAAAAATATGGTGAAAGTT +
Preference number: 4 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFQTRKC*KNMVKV
Trigger: AACTTTCACCATATTTTTGCAACACTTTCTCGTCTG...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCACTGATTCTCTCCGCTTaGAACAGATTCTTCCAAAAG +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSLILSA*NRFFQK
Trigger: CTTTTGGAAGAATCTGTTCCAAGCGGAGAGAATCAG...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
CDS-3UTR CCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGAAATGGATGGTGATTaGGTAGAGTCAGTTCAACAG +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSEMDGD*VESVQQ
Trigger: CTGTTGAACTGACTCTACCCAATCACCATCCATTTC...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAAGTTCTTCTTCTTCTTaGCAGCTTTGCAGACATTCA +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSSSSSS*QLCRHS
Trigger: TGAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACT...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCAGACGAGAAAGTGTTaGAAAAATATGGTGAAAGTT +
Preference number: 4 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLQTRKC*KNMVKV
Trigger: AACTTTCACCATATTTTTGCAACACTTTCTCGTCTG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR GCA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATTCTTCCAAAAGCTaGGAGCTAACATTAACAAAG +
Preference number: 4 (lower is better)
Translates to: YTESHNPYNPGWWLITTSDSSKS*ELTLTK
Trigger: CTTTGTTAATGTTAGCTCGCAGCTTTTGGAAGAATC...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
CDS GCA 90 bp GCCAGGAGCATGTCATGGCCTGGGCGAAGAGCAACGTTCATGCACTaGAGCAGGGCGTCAGCAGCGTTGGTGCAGGCCTCGATGCCTCGG +
Preference number: 5 (lower is better)
Translates to: ARSMSWPGRRATFMH*SRASAALVQASMPR
Trigger: CCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCCCAGGCCATGACATGCTCCTGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp AGTCTCCGGGCGAAATGTTCCCTCAGGTCACTGAAGCGCTGCTGCTaGTGCTTGACGGCCAGGAGCATGTCATGGCCTGGGCGAAGAGCA +
Preference number: 5 (lower is better)
Translates to: SLRAKCSLRSLKRCC*CLTARSMSWPGRRA
Trigger: TGCTCTTCGCCCAGGCCATGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTTCAGTGACCTGAGGGAACATTTCGCCCGGAGACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 90 bp GGCGAAGAGCAACGTTCATGCACTGCAGCAGGGCGTCAGCAGCGTTaGTGCAGGCCTCGATGCCTCGGGAAGAAACAAGATCTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: GEEQRSCTAAGRQQR*CRPRCLGKKQDLLP
Trigger: AGGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGAGGGCGTCAGCAGCGTaGGTGCAGGCCTCGATGCCT +
Preference number: 5 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMRASAA*VQASMP
Trigger: AGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCT...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp GAAGAGCAACGTTCATGCACTGCAGCAGGGCGTCAGCAGCGTTGGTaGAGGCCTCGATGCCTCGGGAAGAAACAAGATCTCCTTCCTGAA +
Preference number: 5 (lower is better)
Translates to: EEQRSCTAAGRQQRW*RPRCLGKKQDLLPE
Trigger: TTCAGGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp TCATGCACTGCAGCAGGGCGTCAGCAGCGTTGGTGCAGGCCTCGATaGCTCGGGAAGAAACAAGATCTCCTTCCTGAAGGGCCTTTATAT +
Preference number: 5 (lower is better)
Translates to: SCTAAGRQQRWCRPR*LGKKQDLLPEGPLY
Trigger: ATATAAAGGCCCTTCAGGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACACGCTGCTGCTGCTGCTaGACGGCCAGGAGCATGTCA +
Preference number: 5 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTRCCCC*TARSMS
Trigger: TGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCG...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp CAGCAACTGCATCAGGGTGTTCACTTGTTTCTCAGAGGCCATGATTaGCTGAATGTTGGCCCCATCGAGCACCTGCAGCTCCCGGGACAA +
Preference number: 5 (lower is better)
Translates to: QQLHQGVHLFLRGHD*LNVGPIEHLQLPGQ
Trigger: TTGTCCCGGGAGCTGCAGGTGCTCGATGGGGCCAACATTCAGTCAATCATGGCCTCTGAGAAACAAGTGAACACCCTGATGCAGTTGCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGAGGGCGTCAGCAGCGTaGGTGCAGGCCTCGATGCCT +
Preference number: 5 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLRASAA*VQASMP
Trigger: AGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCT...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCAGGGCGTCAGCAGCGTaGGTGCAGGCCTCGATGCCT +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLRASAA*VQASMP
Trigger: AGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGCTGCTGCTGCTGCTaGACGGCCAGGAGCATGTCA +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLRCCCC*TARSMS
Trigger: TGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCG...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp TTTTCTTGCGCAGGTAGCGCTGGTTCAGCTTCCAAATGCAGGAGATaGAGGCGTTCTTCTCAGCCGTGCTGCTGGCCACCCACTTATAGA +
Preference number: 5 (lower is better)
Translates to: FSCAGSAGSASKCRR*RRSSQPCCWPPTYR
Trigger: TCTATAAGTGGGTGGCCAGCAGCACGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGAAGCTGAACCAGCGCTACCTGCGCAAGAAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCATCGGATTTCTTGACTTaGACCACCTTCACCTGCACG +
Preference number: 5 (lower is better)
Translates to: GTPTVPLRTAARKHKKLASDFLT*TTFTCT
Trigger: CGTGCAGGTGAAGGTGGTCAAAGTCAAGAAATCCGA...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAAATTTGGTGTATGCTTaGTCCAGATCGCCACGGCGT +
Preference number: 5 (lower is better)
Translates to: GTPTVPLRTAARKHKKLANLVYA*SRSPRR
Trigger: ACGCCGTGGCGATCTGGACAAAGCATACACCAAATT...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp CCCTCGAAGTGCTTGTACTGGCGTATAAACTCATCTTGCATGGAGTaGCACACCACCTGCAGTAAGTTCTCCTCCTCACACAGGTGCTTG +
Preference number: 5 (lower is better)
Translates to: PSKCLYWRINSSCME*HTTCSKFSSSHRCL
Trigger: CAAGCACCTGTGTGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATACGCCAGTACAAGCACTTCGAGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATCGGATTTCTTGACTTaGACCACCTTCACCTGCACG +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPSDFLT*TTFTCT
Trigger: CGTGCAGGTGAAGGTGGTCAAAGTCAAGAAATCCGA...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGTCTTTGATGGCATCTTaGGCGTCGACCACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMSLMAS*ASTTAR
Trigger: CCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGA...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCAAGTGCTGAGCAAGAGTaGAACTCTGATCATGACCCT +
Preference number: 5 (lower is better)
Translates to: GTPTVPLRTAARKHKKLASAEQE*NSDHDP
Trigger: AGGGTCATGATCAGAGTTCAACTCTTGCTCAGCACT...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAAATTTGGTGTATGCTTaGTCCAGATCGCCACGGCGT +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPNLVYA*SRSPRR
Trigger: ACGCCGTGGCGATCTGGACAAAGCATACACCAAATT...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCATCCGTGTACTTCTGCTaGGCTTCTTTCTTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: GTPTVPLRTAARKHKKLASVYFC*ASFFSA
Trigger: AGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGGA...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCACCCTTCTTCACCTCCTaGCCTGGATACTCTTTAATG +
Preference number: 5 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAPFFTS*PGYSLM
Trigger: CATTAAAGAGTATCCAGGCAAGGAGGTGAAGAAGGG...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp ATGTCCAGTAGGGAGGACGACTGGGACCTGCGACTGCCCGAGCTCTaGACACTGAGTTTATTCAGACTAGAAGTTGATCCAGTGAGTTTC +
Preference number: 5 (lower is better)
Translates to: MSSREDDWDLRLPEL*TLSLFRLEVDPVSF
Trigger: GAAACTCACTGGATCAACTTCTAGTCTGAATAAACTCAGTGTTCAGAGCTCGGGCAGTCGCAGGTCCCAGTCGTCCTCCCTACTGGACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp GCTATCAACCCCTCGAAGTGCTTGTACTGGCGTATAAACTCATCTTaGATGGAGTGCCACACCACCTGCAGTAAGTTCTCCTCCTCACAC +
Preference number: 5 (lower is better)
Translates to: AINPSKCLYWRINSS*MECHTTCSKFSSSH
Trigger: GTGTGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATACGCCAGTACAAGCACTTCGAGGGGTTGATAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTCTTCTTGCCAGCTTaGCAGACATTCACGATGCTC +
Preference number: 5 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLFFLPA*QTFTML
Trigger: GAGCATCGTGAATGTCTGCAAAGCTGGCAAGAAGAA...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAAATTCCGGGTTTTCTTaGATGGCATCTTTGGCGTCG +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPNSGFS*MASLAS
Trigger: CGACGCCAAAGATGCCATCAAAGAAAACCCGGAATT...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCACTGCTCTTTCACACTTaGGAGCATCTCCTCGTAACT +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPLLFHT*EHLLVT
Trigger: AGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAG...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCACGCTGCTGCTGCTGCTaGACGGCCAGGAGCATGTCA +
Preference number: 5 (lower is better)
Translates to: YTESHNPYNPGWWLITTSRCCCC*TARSMS
Trigger: TGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCG...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGCCCTTCTTCACCTCCTaGCCTGGATACTCTTTAATG +
Preference number: 5 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLPFFTS*PGYSLM
Trigger: CATTAAAGAGTATCCAGGCAAGGAGGTGAAGAAGGG...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp TCTTGGTACTCATCTACCGCTTCTTCATCCCCTCCCGCTACACTCTaGTTCTCTCCGCTTGGAACAGATTCTTCCAAAAGCTGCGAGCTA +
Preference number: 5 (lower is better)
Translates to: SWYSSTASSSPPATL*FSPLGTDSSKSCEL
Trigger: TAGCTCGCAGCTTTTGGAAGAATCTGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGGGGATGAAGAAGCGGTAGATGAGTACCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
CDS GCA 90 bp ATCATATCTTTTTCAGAGGAAACAGGGAGCAGGGTGCCAGAACTGTaGTGCCGTAATAACGAGCCTCCATCCAGGTCTTCTGCTTCAGTC +
Preference number: 5 (lower is better)
Translates to: IISFSEETGSRVPEL*CRNNEPPSRSSASV
Trigger: GACTGAAGCAGAAGACCTGGATGGAGGCTCGTTATTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATATGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGTTCTTCTTGCCAGCTTaGCAGACATTCACGATGCTC +
Preference number: 5 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMFFLPA*QTFTML
Trigger: GAGCATCGTGAATGTCTGCAAAGCTGGCAAGAAGAA...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACACCCTTGTCGGATTTCTaGACTTTGACCACCTTCACC +
Preference number: 5 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTPLSDF*TLTTFT
Trigger: GGTGAAGGTGGTCAAAGTCAAGAAATCCGACAAGGG...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCTGCTCTTTCACACTTaGGAGCATCTCCTCGTAACT +
Preference number: 5 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMLLFHT*EHLLVT
Trigger: AGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAG...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGCTCCTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGAGTGCTGAGCAAGAGTaGAACTCTGATCATGACCCT +
Preference number: 5 (lower is better)
Translates to: GSSEHLLTLSVVFAGLRMSAEQE*NSDHDP
Trigger: AGGGTCATGATCAGAGTTCAACTCTTGCTCAGCACT...CATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAGGAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATGGAGACCAAACTTCTaGCTTTCTTTAGAGGTGCCA +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPWRPNF*LSLEVP
Trigger: TGGCACCTCTAAAGAAAGCAAGAAGTTTGGTCTCCA...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000049469.13
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCACGGCGTTCAGCATTTTaGAAAATTGATTCTGCGAGC +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPRRSAF*KIDSAS
Trigger: GCTCGCAGAATCAATTTTCAAAAATGCTGAACGCCG...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAAGCGTATAAACTCATCTaGCATGGAGTGCCACACCAC +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKAYKLI*HGVPHH
Trigger: GTGGTGTGGCACTCCATGCAAGATGAGTTTATACGC...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp CGAGGAACTCTATCTCGGACAGGAGCTTCACATTATTCGTGTTGCTaGGATGGATCAGGTGGTTGCTCTCAGAGATCTGATCCATCTGCT +
Preference number: 5 (lower is better)
Translates to: RGTLSRTGASHYSCC*DGSGGCSQRSDPSA
Trigger: AGCAGATGGATCAGATCTCTGAGAGCAACCACCTGATCCATCTCAGCAACACGAATAATGTGAAGCTCCTGTCCGAGATAGAGTTCCTCG
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp TCTGATCCATCTGCTCTTTCACACTTTGGAGCATCTCCTCGTAACTaGTCAGTTTCAGTTCAATCTGGTCCACCTCCGTTAGCGCCTCAT +
Preference number: 5 (lower is better)
Translates to: SDPSALSHFGASPRN*SVSVQSGPPPLAPH
Trigger: ATGAGGCGCTAACGGAGGTGGACCAGATTGAACTGAAACTGAGCAGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAGATGGATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp ATATCTTTTTCAGAGGAAACAGGGAGCAGGGTGCCAGAACTGTGCTaGCGTAATAACGAGCCTCCATCCAGGTCTTCTGCTTCAGTCATT +
Preference number: 5 (lower is better)
Translates to: ISFSEETGSRVPELC*RNNEPPSRSSASVI
Trigger: AATGACTGAAGCAGAAGACCTGGATGGAGGCTCGTTATTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp TCATTTGGCGAATCATATCTTTTTCAGAGGAAACAGGGAGCAGGGTaGCAGAACTGTGCTGCCGTAATAACGAGCCTCCATCCAGGTCTT +
Preference number: 5 (lower is better)
Translates to: SFGESYLFQRKQGAG*QNCAAVITSLHPGL
Trigger: AAGACCTGGATGGAGGCTCGTTATTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 90 bp TTGTACTGGCGTATAAACTCATCTTGCATGGAGTGCCACACCACCTaGAGTAAGTTCTCCTCCTCACACAGGTGCTTGTCTACCTTCTTG +
Preference number: 5 (lower is better)
Translates to: LYWRINSSCMECHTT*SKFSSSHRCLSTFL
Trigger: CAAGAAGGTAGACAAGCACCTGTGTGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATACGCCAGTACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 90 bp GCCAGCTTTGCAGACATTCACGATGCTCAGCAGGCGTTCATCATTTaGTGTGAAGATATCTCTCTGCAGCGCATGCTTGATTGCTGTCAT +
Preference number: 5 (lower is better)
Translates to: ASFADIHDAQQAFII*CEDISLQRMLDCCH
Trigger: ATGACAGCAATCAAGCATGCGCTGCAGAGAGATATCTTCACACCAAATGATGAACGCCTGCTGAGCATCGTGAATGTCTGCAAAGCTGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 90 bp GGGAAGAAACAAGATCTCCTTCCTGAAGGGCCTTTATATGACCTTTaGCCAAGTCCATGTGGTTCACGAGGAACTCTATCTCGGACAGGA +
Preference number: 5 (lower is better)
Translates to: GKKQDLLPEGPLYDL*PSPCGSRGTLSRTG
Trigger: TCCTGTCCGAGATAGAGTTCCTCGTGAACCACATGGACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTGTTTCTTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCCTTGTCGGATTTCTaGACTTTGACCACCTTCACC +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLPLSDF*TLTTFT
Trigger: GGTGAAGGTGGTCAAAGTCAAGAAATCCGACAAGGG...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp AGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTGTCCTGCTCTTCTCTaGCATTTAACTCTTGGTACT +
Preference number: 5 (lower is better)
Translates to: RLVADYHIRSPAHPYAHLCPALL*HLTLGT
Trigger: AGTACCAAGAGTTAAATGCAAGAGAAGAGCAGGACA...CAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAGTGCTGAGCAAGAGTaGAACTCTGATCATGACCCT +
Preference number: 5 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTSAEQE*NSDHDP
Trigger: AGGGTCATGATCAGAGTTCAACTCTTGCTCAGCACT...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GGAACTCCCACTGTTCCACTGAGGACAGCCGCTCGAAAACACAAGAAGCTGGCACCTAATGCAATTAGGTaGTTCAGTTCTGGTTCAATG +
Preference number: 5 (lower is better)
Translates to: GTPTVPLRTAARKHKKLAPNAIR*FSSGSM
Trigger: CATTGAACCAGAACTGAACAACCTAATTGCATTAGG...TGCCAGCTTCTTGTGTTTTCGAGCGGCTGTCCTCAGTGGAACAGTGGGAGTTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTAATTTGGTGTATGCTTaGTCCAGATCGCCACGGCGT +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLNLVYA*SRSPRR
Trigger: ACGCCGTGGCGATCTGGACAAAGCATACACCAAATT...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCCCCTTCTTCACCTCCTaGCCTGGATACTCTTTAATG +
Preference number: 5 (lower is better)
Translates to: LRALAHSFRSVCWTENACPFFTS*PGYSLM
Trigger: CATTAAAGAGTATCCAGGCAAGGAGGTGAAGAAGGG...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCGCGTATAAACTCATCTaGCATGGAGTGCCACACCAC +
Preference number: 5 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFAYKLI*HGVPHH
Trigger: GTGGTGTGGCACTCCATGCAAGATGAGTTTATACGC...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp CTTAGAAAAGATGCTGGGTCCACGTTCTGTGCGGTCCACACGTGGTaGCTCATTTTGACCAGCATGTACAGGGAGTTAAAGCTATCTACT +
Preference number: 5 (lower is better)
Translates to: LRKDAGSTFCAVHTW*LILTSMYRELKLST
Trigger: AGTAGATAGCTTTAACTCCCTGTACATGCTGGTCAAAATGAGTCACCACGTGTGGACCGCACAGAACGTGGACCCAGCATCTTTTCTAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
ENSMUST00000134521.2
CDS TCA 90 bp TCTTGGTACTCATCTACCGCTTCTTCATCCCCTCCCGCTACACTCTaGTTCTCTCCGCTTGGAACAGATTCTTCTGTAACTTTAGGCAGT +
Preference number: 5 (lower is better)
Translates to: SWYSSTASSSPPATL*FSPLGTDSSVTLGS
Trigger: ACTGCCTAAAGTTACAGAAGAATCTGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGGGGATGAAGAAGCGGTAGATGAGTACCAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113493.8
CDS CCA 90 bp TACCGCTTCTTCATCCCCTCCCGCTACACTCTGATTCTCTCCGCTTaGAACAGATTCTTCTGTAACTTTAGGCAGTTCTTCCAAAAGCTG +
Preference number: 5 (lower is better)
Translates to: YRFFIPSRYTLILSA*NRFFCNFRQFFQKL
Trigger: CAGCTTTTGGAAGAACTGCCTAAAGTTACAGAAGAATCTGTTCCAAGCGGAGAGAATCAGAGTGTAGCGGGAGGGGATGAAGAAGCGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACAGTTCTTCTTCTTCTaGCCAGCTTTGCAGACATTC +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKQFFFF*PALQTF
Trigger: GAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACTG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCTCGGATTTCTTGACTTaGACCACCTTCACCTGCACG +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLSDFLT*TTFTCT
Trigger: CGTGCAGGTGAAGGTGGTCAAAGTCAAGAAATCCGA...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTAATTCCGGGTTTTCTTaGATGGCATCTTTGGCGTCG +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLNSGFS*MASLAS
Trigger: CGACGCCAAAGATGCCATCAAAGAAAACCCGGAATT...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCACTGATCATGACCCTGTaGAACAAAAACATTGTTGAG +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPLIMTL*NKNIVE
Trigger: CTCAACAATGTTTTTGTTCAACAGGGTCATGATCAG...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACGGCGTTCAGCATTTTaGAAAATTGATTCTGCGAGC +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKRRSAF*KIDSAS
Trigger: GCTCGCAGAATCAATTTTCAAAAATGCTGAACGCCG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTTCCGTGTACTTCTGCTaGGCTTCTTTCTTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLSVYFC*ASFFSA
Trigger: AGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGGA...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCAACCCCTCGAAGTGCTaGTACTGGCGTATAAACTCA +
Preference number: 5 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFNPSKC*YWRINS
Trigger: TGAGTTTATACGCCAGTACAAGCACTTCGAGGGGTT...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACTCTCTGTTTCCTGCTaGACAGCACTTTCTTTTCGA +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKLSVSC*TALSFR
Trigger: TCGAAAAGAAAGTGCTGTCAAGCAGGAAACAGAGAG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 90 bp TCAGCTTGGCATAGCGGAGCAAGTCTCTATGAAATGGATGGTGATTaGGTAGAGTCAGTTCAACAGAGTGCTGAGCAAGAGTTGAACTCT +
Preference number: 5 (lower is better)
Translates to: SAWHSGASLYEMDGD*VESVQQSAEQELNS
Trigger: AGAGTTCAACTCTTGCTCAGCACTCTGTTGAACTGACTCTACCCAATCACCATCCATTTCATAGAGACTTGCTCCGCTATGCCAAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCTTCTTCTTGCCAGCTTaGCAGACATTCACGATGCTC +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLFFLPA*QTFTML
Trigger: GAGCATCGTGAATGTCTGCAAAGCTGGCAAGAAGAA...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCATCTTTGATGGCATCTTaGGCGTCGACCACAGCAAGG +
Preference number: 5 (lower is better)
Translates to: YTESHNPYNPGWWLITTSSLMAS*ASTTAR
Trigger: CCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGA...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAATCTGATTCTCTCCGCTaGGAACAGATTCTTCCAAAA +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKSDSLR*EQILPK
Trigger: TTTTGGAAGAATCTGTTCCAAGCGGAGAGAATCAGA...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
CDS-3UTR CAA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCTGATTCTCTCCGCTaGGAACAGATTCTTCCAAAA +
Preference number: 5 (lower is better)
Translates to: LRALAHSFRSVCWTENACSDSLR*EQILPK
Trigger: TTTTGGAAGAATCTGTTCCAAGCGGAGAGAATCAGA...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
CDS-3UTR CAA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTGTCCTGCTCTTCTCTaGCATTTAACTCTTGGTACT +
Preference number: 5 (lower is better)
Translates to: LRALAHSFRSVCWTENACCPALL*HLTLGT
Trigger: AGTACCAAGAGTTAAATGCAAGAGAAGAGCAGGACA...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGCTGCTCTTTCACACTTaGGAGCATCTCCTCGTAACT +
Preference number: 5 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLLLFHT*EHLLVT
Trigger: AGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAG...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TCCTTACAATCCAGGCTGGTGGCTGATTACCACATCAGATCCCCTGCCCATCCAATGCAACGGAATATTTaGATCATCATTTGGCGAATC +
Preference number: 5 (lower is better)
Translates to: SLQSRLVADYHIRSPAHPMQRNI*IIIWRI
Trigger: GATTCGCCAAATGATGATCAAAATATTCCGTTGCAT...TGGATGGGCAGGGGATCTGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGTCCGTGTACTTCTGCTaGGCTTCTTTCTTCTCAGCT +
Preference number: 5 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLSVYFC*ASFFSA
Trigger: AGCTGAGAAGAAAGAAGCCAAGCAGAAGTACACGGA...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GATAAATGCTTAAGTGCATCACCTGGATGTCAAATAAAACCGAGCCGCAGGCTGAACCCCTCGAAGTGCTaGTACTGGCGTATAAACTCA +
Preference number: 5 (lower is better)
Translates to: DKCLSASPGCQIKPSRRLNPSKC*YWRINS
Trigger: TGAGTTTATACGCCAGTACAAGCACTTCGAGGGGTT...CAGCCTGCGGCTCGGTTTTATTTGACATCCAGGTGATGCACTTAAGCATTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCAACCCCTCGAAGTGCTaGTACTGGCGTATAAACTCA +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLNPSKC*YWRINS
Trigger: TGAGTTTATACGCCAGTACAAGCACTTCGAGGGGTT...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTCTCTGTTTCCTGCTaGACAGCACTTTCTTTTCGA +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLLSVSC*TALSFR
Trigger: TCGAAAAGAAAGTGCTGTCAAGCAGGAAACAGAGAG...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 90 bp CCTCGTATTTTCCATAGTCTGTACTCTTTAGCCACTCCATCAGCTTaGCATAGCGGAGCAAGTCTCTATGAAATGGATGGTGATTGGGTA +
Preference number: 5 (lower is better)
Translates to: PRIFHSLYSLATPSA*HSGASLYEMDGDWV
Trigger: TACCCAATCACCATCCATTTCATAGAGACTTGCTCCGCTATGCCAAGCTGATGGAGTGGCTAAAGAGTACAGACTATGGAAAATACGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCAGTTCTTCTTCTTCTaGCCAGCTTTGCAGACATTC +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLQFFFF*PALQTF
Trigger: GAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACTG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCACCCTTGTCGGATTTCTaGACTTTGACCACCTTCACC +
Preference number: 5 (lower is better)
Translates to: YTESHNPYNPGWWLITTSPLSDF*TLTTFT
Trigger: GGTGAAGGTGGTCAAAGTCAAGAAATCCGACAAGGG...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TACCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACACTGATCATGACCCTGTaGAACAAAAACATTGTTGAG +
Preference number: 5 (lower is better)
Translates to: YHIRSPAHPYAHLLDKGTLIMTL*NKNIVE
Trigger: CTCAACAATGTTTTTGTTCAACAGGGTCATGATCAG...TGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACTTCTGCTTCAGTCATaGATGCAGACATGTTTTGAT +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKLLLQS*MQTCFD
Trigger: ATCAAAACATGTCTGCATCAATGACTGAAGCAGAAG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CCACATCAGATCCCCTGCCCATCCATATGCACACTTGTTAGACAAGGGGACAAACCTAATGCAATTAGGTaGTTCAGTTCTGGTTCAATG +
Preference number: 5 (lower is better)
Translates to: PHQIPCPSICTLVRQGDKPNAIR*FSSGSM
Trigger: CATTGAACCAGAACTGAACAACCTAATTGCATTAGG...TTTGTCCCCTTGTCTAACAAGTGTGCATATGGATGGGCAGGGGATCTGATGTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCCTTCTGCTTCAGTCATaGATGCAGACATGTTTTGAT +
Preference number: 5 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFLLLQS*MQTCFD
Trigger: ATCAAAACATGTCTGCATCAATGACTGAAGCAGAAG...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCAGAGCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTGGTTACTAATGCATTaGTCAAAGTTCCTCTTCACA +
Preference number: 5 (lower is better)
Translates to: LRALAHSFRSVCWTENACWLLMH*SKFLFT
Trigger: TGTGAAGAGGAACTTTGACAAATGCATTAGTAACCA...GCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGCTCTGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCATGCAACGGAATATTTaGATCATCATTTGGCGAATC +
Preference number: 5 (lower is better)
Translates to: HLLTLSVVFAGLRMHAHFMQRNI*IIIWRI
Trigger: GATTCGCCAAATGATGATCAAAATATTCCGTTGCAT...GAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCCCTAATGCAATTAGGTaGTTCAGTTCTGGTTCAATG +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLPNAIR*FSSGSM
Trigger: CATTGAACCAGAACTGAACAACCTAATTGCATTAGG...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp GCACTTGCTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTTGGTTACTAATGCATTaGTCAAAGTTCCTCTTCACA +
Preference number: 5 (lower is better)
Translates to: ALAHSFRSVCWTENACSLWLLMH*SKFLFT
Trigger: TGTGAAGAGGAACTTTGACAAATGCATTAGTAACCA...AAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAGCAAGTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCACGGCGTTCAGCATTTTaGAAAATTGATTCTGCGAGC +
Preference number: 5 (lower is better)
Translates to: YTESHNPYNPGWWLITTSRRSAF*KIDSAS
Trigger: GCTCGCAGAATCAATTTTCAAAAATGCTGAACGCCG...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCATGTCCTGCTCTTCTCTaGCATTTAACTCTTGGTACT +
Preference number: 5 (lower is better)
Translates to: YTESHNPYNPGWWLITTSCPALL*HLTLGT
Trigger: AGTACCAAGAGTTAAATGCAAGAGAAGAGCAGGACA...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp CTCACTCTTTCCGTAGTGTTTGCTGGACTGAGAATGCATGCTCACTTCTTTCTCTGGTTACTAATGCATTaGTCAAAGTTCCTCTTCACA +
Preference number: 5 (lower is better)
Translates to: LTLSVVFAGLRMHAHFFLWLLMH*SKFLFT
Trigger: TGTGAAGAGGAACTTTGACAAATGCATTAGTAACCA...GAGAAAGAAGTGAGCATGCATTCTCAGTCCAGCAAACACTACGGAAAGAGTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 90 bp TTGTTCAGTTCTGGTTCAATGCAACGGAATATTTTGATCATCATTTaGCGAATCATATCTTTTTCAGAGGAAACAGGGAGCAGGGTGCCA +
Preference number: 5 (lower is better)
Translates to: LFSSGSMQRNILIII*RIISFSEETGSRVP
Trigger: TGGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS-3UTR CAA 90 bp TATACAGAGTCACATAATCCTTACAATCCAGGCTGGTGGCTGATTACCACATCACTTCTGCTTCAGTCATaGATGCAGACATGTTTTGAT +
Preference number: 5 (lower is better)
Translates to: YTESHNPYNPGWWLITTSLLLQS*MQTCFD
Trigger: ATCAAAACATGTCTGCATCAATGACTGAAGCAGAAG...TGATGTGGTAATCAGCCACCAGCCTGGATTGTAAGGATTATGTGACTCTGTATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 90 bp ATGCAATTAGGTTGTTCAGTTCTGGTTCAATGCAACGGAATATTTTaGTCATCATTTGGCGAATCATATCTTTTTCAGAGGAAACAGGGA +
Preference number: 5 (lower is better)
Translates to: MQLGCSVLVQCNGIF*SSFGESYLFQRKQG
Trigger: TCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTGCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp ATGTCATGGCCTGGGCGAAGAGCAACGTTCATGCACTaGAGCAGGGCGTCAGCAGCGTTGGTGCAGGCCTCG +
Preference number: 6 (lower is better)
Translates to: MSWPGRRATFMH*SRASAALVQAS
Trigger: CGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCCCAGGCCATGACAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp GGAGCATGTCATGGCCTGGGCGAAGAGCAACGTTCATaGACTGCAGCAGGGCGTCAGCAGCGTTGGTGCAGG +
Preference number: 6 (lower is better)
Translates to: GACHGLGEEQRS*TAAGRQQRWCR
Trigger: CCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCCCAGGCCATGACATGCTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp GCAGCAGGGCGTCAGCAGCGTTGGTGCAGGCCTCGATaGCTCGGGAAGAAACAAGATCTCCTTCCTGAAGGG +
Preference number: 6 (lower is better)
Translates to: AAGRQQRWCRPR*LGKKQDLLPEG
Trigger: CCCTTCAGGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp CGGGCGAAATGTTCCCTCAGGTCACTGAAGCGCTGCTaGTGCTGCTTGACGGCCAGGAGCATGTCATGGCCT +
Preference number: 6 (lower is better)
Translates to: RAKCSLRSLKRC*CCLTARSMSWP
Trigger: AGGCCATGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTTCAGTGACCTGAGGGAACATTTCGCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp CTCCGGGCGAAATGTTCCCTCAGGTCACTGAAGCGCTaGTGCTGCTGCTTGACGGCCAGGAGCATGTCATGG +
Preference number: 6 (lower is better)
Translates to: LRAKCSLRSLKR*CCCLTARSMSW
Trigger: CCATGACATGCTCCTGGCCGTCAAGCAGCAGCAGCAGCGCTTCAGTGACCTGAGGGAACATTTCGCCCGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp GGGCGAAGAGCAACGTTCATGCACTGCAGCAGGGCGTCAGCAGCGTaGGTGCAGGCCTCGATGCCTCGGGAAGAAACAAGATCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: GRRATFMHCSRASAA*VQASMPREETRSPS
Trigger: GGAAGGAGATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGCTCTTCGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 72 bp GCAGGTAGCGCTGGTTCAGCTTCCAAATGCAGGAGATaGAGGCGTTCTTCTCAGCCGTGCTGCTGGCCACCC +
Preference number: 6 (lower is better)
Translates to: AGSAGSASKCRR*RRSSQPCCWPP
Trigger: GGGTGGCCAGCAGCACGGCTGAGAAGAACGCCTTCATCTCCTGCATTTGGAAGCTGAACCAGCGCTACCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp CGTTCATGCACTGCAGCAGGGCGTCAGCAGCGTTGGTaGAGGCCTCGATGCCTCGGGAAGAAACAAGATCTC +
Preference number: 6 (lower is better)
Translates to: RSCTAAGRQQRW*RPRCLGKKQDL
Trigger: GAGATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp GCAACGTTCATGCACTGCAGCAGGGCGTCAGCAGCGTaGGTGCAGGCCTCGATGCCTCGGGAAGAAACAAGA +
Preference number: 6 (lower is better)
Translates to: ATFMHCSRASAA*VQASMPREETR
Trigger: TCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 72 bp CAACGTTCATGCACTGCAGCAGGGCGTCAGCAGCGTTaGTGCAGGCCTCGATGCCTCGGGAAGAAACAAGAT +
Preference number: 6 (lower is better)
Translates to: QRSCTAAGRQQR*CRPRCLGKKQD
Trigger: ATCTTGTTTCTTCCCGAGGCATCGAGGCCTGCACCAACGCTGCTGACGCCCTGCTGCAGTGCATGAACGTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 72 bp AGGGTGTTCACTTGTTTCTCAGAGGCCATGATTGACTaGATGTTGGCCCCATCGAGCACCTGCAGCTCCCGG +
Preference number: 6 (lower is better)
Translates to: RVFTCFSEAMID*MLAPSSTCSSR
Trigger: CCGGGAGCTGCAGGTGCTCGATGGGGCCAACATTCAGTCAATCATGGCCTCTGAGAAACAAGTGAACACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp ATCTGGTCCACCTCCGTTAGCGCCTCATCCAGCAACTaGATCAGGGTGTTCACTTGTTTCTCAGAGGCCATG +
Preference number: 6 (lower is better)
Translates to: IWSTSVSASSSN*IRVFTCFSEAM
Trigger: CATGGCCTCTGAGAAACAAGTGAACACCCTGATGCAGTTGCTGGATGAGGCGCTAACGGAGGTGGACCAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 72 bp AGGGAGGACGACTGGGACCTGCGACTGCCCGAGCTCTaGACACTGAGTTTATTCAGACTAGAAGTTGATCCA +
Preference number: 6 (lower is better)
Translates to: REDDWDLRLPEL*TLSLFRLEVDP
Trigger: TGGATCAACTTCTAGTCTGAATAAACTCAGTGTTCAGAGCTCGGGCAGTCGCAGGTCCCAGTCGTCCTCCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 72 bp GATGCTGGGTCCACGTTCTGTGCGGTCCACACGTGGTaGCTCATTTTGACCAGCATGTACAGGGAGTTAAAG +
Preference number: 6 (lower is better)
Translates to: DAGSTFCAVHTW*LILTSMYRELK
Trigger: CTTTAACTCCCTGTACATGCTGGTCAAAATGAGTCACCACGTGTGGACCGCACAGAACGTGGACCCAGCATC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
ENSMUST00000134521.2
CDS TCA 72 bp ACTGCATCAGGGTGTTCACTTGTTTCTCAGAGGCCATaGTTGACTGAATGTTGGCCCCATCGAGCACCTGCA +
Preference number: 6 (lower is better)
Translates to: TASGCSLVSQRP*LTECWPHRAPA
Trigger: TGCAGGTGCTCGATGGGGCCAACATTCAGTCAATCATGGCCTCTGAGAAACAAGTGAACACCCTGATGCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp TGCAAATCAAATTCCGGGTTTTCTTTGATGGCATCTTaGGCGTCGACCACAGCAAGGTCTCGCAGGGCCCAA +
Preference number: 6 (lower is better)
Translates to: CKSNSGFSLMAS*ASTTARSRRAQ
Trigger: TTGGGCCCTGCGAGACCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGAAAACCCGGAATTTGATTTGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp CTTCACCTCCTTGCCTGGATACTCTTTAATGACTTTGCGAAGCTCTaGCTTGTTGAACGCAAGCTGGTAGCTCACCTCCTCCTCCCGAAT +
Preference number: 6 (lower is better)
Translates to: LHLLAWILFNDFAKL*LVERKLVAHLLLPN
Trigger: ATTCGGGAGGAGGAGGTGAGCTACCAGCTTGCGTTCAACAAGCAAGAGCTTCGCAAAGTCATTAAAGAGTATCCAGGCAAGGAGGTGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp TGCTTGTACTGGCGTATAAACTCATCTTGCATGGAGTaGCACACCACCTGCAGTAAGTTCTCCTCCTCACAC +
Preference number: 6 (lower is better)
Translates to: CLYWRINSSCME*HTTCSKFSSSH
Trigger: GTGTGAGGAGGAGAACTTACTGCAGGTGGTGTGGCACTCCATGCAAGATGAGTTTATACGCCAGTACAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp TTCTCAAAATGCAAATCAAATTCCGGGTTTTCTTTGATGGCATCTTaGGCGTCGACCACAGCAAGGTCTCGCAGGGCCCAAGCAATCTGC +
Preference number: 6 (lower is better)
Translates to: FSKCKSNSGFSLMAS*ASTTARSRRAQAIC
Trigger: GCAGATTGCTTGGGCCCTGCGAGACCTTGCTGTGGTCGACGCCAAAGATGCCATCAAAGAAAACCCGGAATTTGATTTGCATTTTGAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp CGCACTCGCAGCCTTCCATCATTATCTCGATGTCCTGCTCTTCTCTaGCATTTAACTCTTGGTACTCATCTACCGCTTCTTCATCCCCTC +
Preference number: 6 (lower is better)
Translates to: RTRSLPSLSRCPALL*HLTLGTHLPLLHPL
Trigger: GAGGGGATGAAGAAGCGGTAGATGAGTACCAAGAGTTAAATGCAAGAGAAGAGCAGGACATCGAGATAATGATGGAAGGCTGCGAGTGCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 72 bp AACTCTGATCATGACCCTGTTGAACAAAAACATTGTTaGGATGGCTGGCCAGTCTCCGGGCGAAATGTTCCC +
Preference number: 6 (lower is better)
Translates to: NSDHDPVEQKHC*DGWPVSGRNVP
Trigger: GGGAACATTTCGCCCGGAGACTGGCCAGCCATCTCAACAATGTTTTTGTTCAACAGGGTCATGATCAGAGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp TCACTGTGGCACACAGAAAACAGTTCTTCTTCTTCTTaGCAGCTTTGCAGACATTCACGATGCTCAGCAGGC +
Preference number: 6 (lower is better)
Translates to: SLWHTENSSSSS*QLCRHSRCSAG
Trigger: GCCTGCTGAGCATCGTGAATGTCTGCAAAGCTGGCAAGAAGAAGAAGAACTGTTTTCTGTGTGCCACAGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp GAATCATATCTTTTTCAGAGGAAACAGGGAGCAGGGTaGCAGAACTGTGCTGCCGTAATAACGAGCCTCCAT +
Preference number: 6 (lower is better)
Translates to: ESYLFQRKQGAG*QNCAAVITSLH
Trigger: ATGGAGGCTCGTTATTACGGCAGCACAGTTCTGGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATATGATTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 72 bp GCAGACATTCACGATGCTCAGCAGGCGTTCATCATTTaGTGTGAAGATATCTCTCTGCAGCGCATGCTTGAT +
Preference number: 6 (lower is better)
Translates to: ADIHDAQQAFII*CEDISLQRMLD
Trigger: ATCAAGCATGCGCTGCAGAGAGATATCTTCACACCAAATGATGAACGCCTGCTGAGCATCGTGAATGTCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp CTTGCCTGGATACTCTTTAATGACTTTGCGAAGCTCTaGCTTGTTGAACGCAAGCTGGTAGCTCACCTCCTC +
Preference number: 6 (lower is better)
Translates to: LAWILFNDFAKL*LVERKLVAHLL
Trigger: GAGGAGGTGAGCTACCAGCTTGCGTTCAACAAGCAAGAGCTTCGCAAAGTCATTAAAGAGTATCCAGGCAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS TCA 72 bp CTATCTCGGACAGGAGCTTCACATTATTCGTGTTGCTaGGATGGATCAGGTGGTTGCTCTCAGAGATCTGAT +
Preference number: 6 (lower is better)
Translates to: LSRTGASHYSCC*DGSGGCSQRSD
Trigger: ATCAGATCTCTGAGAGCAACCACCTGATCCATCTCAGCAACACGAATAATGTGAAGCTCCTGTCCGAGATAG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS GCA 72 bp TCTGCTCTTTCACACTTTGGAGCATCTCCTCGTAACTaGTCAGTTTCAGTTCAATCTGGTCCACCTCCGTTA +
Preference number: 6 (lower is better)
Translates to: SALSHFGASPRN*SVSVQSGPPPL
Trigger: TAACGGAGGTGGACCAGATTGAACTGAAACTGAGCAGTTACGAGGAGATGCTCCAAAGTGTGAAAGAGCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 72 bp CAAGATCTCCTTCCTGAAGGGCCTTTATATGACCTTTaGCCAAGTCCATGTGGTTCACGAGGAACTCTATCT +
Preference number: 6 (lower is better)
Translates to: QDLLPEGPLYDL*PSPCGSRGTLS
Trigger: AGATAGAGTTCCTCGTGAACCACATGGACTTGGCCAAAGGTCATATAAAGGCCCTTCAGGAAGGAGATCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp AACTCTATCTCGGACAGGAGCTTCACATTATTCGTGTaGCTGAGATGGATCAGGTGGTTGCTCTCAGAGATC +
Preference number: 6 (lower is better)
Translates to: NSISDRSFTLFV*LRWIRWLLSEI
Trigger: GATCTCTGAGAGCAACCACCTGATCCATCTCAGCAACACGAATAATGTGAAGCTCCTGTCCGAGATAGAGTT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 72 bp TTCCATAGTCTGTACTCTTTAGCCACTCCATCAGCTTaGCATAGCGGAGCAAGTCTCTATGAAATGGATGGT +
Preference number: 6 (lower is better)
Translates to: FHSLYSLATPSA*HSGASLYEMDG
Trigger: ACCATCCATTTCATAGAGACTTGCTCCGCTATGCCAAGCTGATGGAGTGGCTAAAGAGTACAGACTATGGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 72 bp CTAGAAGTTGATCCAGTGAGTTTCCCAGAGCTTCCATaGAGACCAAACTTCTTGCTTTCTTTAGAGGTGCCA +
Preference number: 6 (lower is better)
Translates to: LEVDPVSFPELP*RPNFLLSLEVP
Trigger: TGGCACCTCTAAAGAAAGCAAGAAGTTTGGTCTCCATGGAAGCTCTGGGAAACTCACTGGATCAACTTCTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000049469.13
CDS TCA 72 bp AAAGTGTTGCAAAAATATGGTGAAAGTTCTCCATCATaGCCACATCCCTGGGCGTCTTCTGGCTCTCATTTG +
Preference number: 6 (lower is better)
Translates to: KVLQKYGESSPS*PHPWASSGSHL
Trigger: CAAATGAGAGCCAGAAGACGCCCAGGGATGTGGTCATGATGGAGAACTTTCACCATATTTTTGCAACACTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp TGGGTAGAGTCAGTTCAACAGAGTGCTGAGCAAGAGTaGAACTCTGATCATGACCCTGTTGAACAAAAACAT +
Preference number: 6 (lower is better)
Translates to: WVESVQQSAEQE*NSDHDPVEQKH
Trigger: ATGTTTTTGTTCAACAGGGTCATGATCAGAGTTCAACTCTTGCTCAGCACTCTGTTGAACTGACTCTACCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp GTTGTTCAGTTCTGGTTCAATGCAACGGAATATTTTGATCATCATTaGGCGAATCATATCTTTTTCAGAGGAAACAGGGAGCAGGGTGCC +
Preference number: 6 (lower is better)
Translates to: VVQFWFNATEYFDHH*ANHIFFRGNREQGA
Trigger: GGCACCCTGCTCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp AATTTGGTGTATGCTTTGTCCAGATCGCCACGGCGTTCAGCATTTTaGAAAATTGATTCTGCGAGCCCAGCAAATTCTTCAAATTCAGCA +
Preference number: 6 (lower is better)
Translates to: NLVYALSRSPRRSAF*KIDSASPANSSNSA
Trigger: TGCTGAATTTGAAGAATTTGCTGGGCTCGCAGAATCAATTTTCAAAAATGCTGAACGCCGTGGCGATCTGGACAAAGCATACACCAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
ENSMUST00000134521.2
CDS GCA 72 bp GATTCTTCTGTAACTTTAGGCAGTTCTTCCAAAAGCTaGGAGCTAACATTAACAAAGTCGATTTTCTTGCGC +
Preference number: 6 (lower is better)
Translates to: DSSVTLGSSSKS*ELTLTKSIFLR
Trigger: GCGCAAGAAAATCGACTTTGTTAATGTTAGCTCGCAGCTTTTGGAAGAACTGCCTAAAGTTACAGAAGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113493.8
CDS CAA 72 bp TTGACCAGCATGTACAGGGAGTTAAAGCTATCTACTTaGTCTCCTAATGCAATTAGGTTGTTCAGTTCTGGT +
Preference number: 6 (lower is better)
Translates to: LTSMYRELKLST*SPNAIRLFSSG
Trigger: ACCAGAACTGAACAACCTAATTGCATTAGGAGACAAAGTAGATAGCTTTAACTCCCTGTACATGCTGGTCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp TTAATGAACACTCCTCTGATTAATTTGGTGTATGCTTaGTCCAGATCGCCACGGCGTTCAGCATTTTTGAAA +
Preference number: 6 (lower is better)
Translates to: LMNTPLINLVYA*SRSPRRSAFLK
Trigger: TTTCAAAAATGCTGAACGCCGTGGCGATCTGGACAAAGCATACACCAAATTAATCAGAGGAGTGTTCATTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
ENSMUST00000134521.2
CDS CAA 90 bp TTCTCCACATTAATGAACACTCCTCTGATTAATTTGGTGTATGCTTaGTCCAGATCGCCACGGCGTTCAGCATTTTTGAAAATTGATTCT +
Preference number: 6 (lower is better)
Translates to: FSTLMNTPLINLVYA*SRSPRRSAFLKIDS
Trigger: AGAATCAATTTTCAAAAATGCTGAACGCCGTGGCGATCTGGACAAAGCATACACCAAATTAATCAGAGGAGTGTTCATTAATGTGGAGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CCA 72 bp TCTGGTTCAATGCAACGGAATATTTTGATCATCATTTaGCGAATCATATCTTTTTCAGAGGAAACAGGGAGC +
Preference number: 6 (lower is better)
Translates to: SGSMQRNILIII*RIISFSEETGS
Trigger: GCTCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp TTCTGGTTCAATGCAACGGAATATTTTGATCATCATTaGGCGAATCATATCTTTTTCAGAGGAAACAGGGAG +
Preference number: 6 (lower is better)
Translates to: FWFNATEYFDHH*ANHIFFRGNRE
Trigger: CTCCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp AATGCAATTAGGTTGTTCAGTTCTGGTTCAATGCAACGGAATATTTaGATCATCATTTGGCGAATCATATCTTTTTCAGAGGAAACAGGG +
Preference number: 6 (lower is better)
Translates to: NAIRLFSSGSMQRNI*IIIWRIISFSEETG
Trigger: CCCTGTTTCCTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTGCATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 90 bp TACAGGGAGTTAAAGCTATCTACTTTGTCTCCTAATGCAATTAGGTaGTTCAGTTCTGGTTCAATGCAACGGAATATTTTGATCATCATT +
Preference number: 6 (lower is better)
Translates to: YRELKLSTLSPNAIR*FSSGSMQRNILIII
Trigger: AATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTGCATTAGGAGACAAAGTAGATAGCTTTAACTCCCTGTA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp AGGTTGTTCAGTTCTGGTTCAATGCAACGGAATATTTaGATCATCATTTGGCGAATCATATCTTTTTCAGAG +
Preference number: 6 (lower is better)
Translates to: RLFSSGSMQRNI*IIIWRIISFSE
Trigger: CTCTGAAAAAGATATGATTCGCCAAATGATGATCAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8
CDS CAA 72 bp TTAAAGCTATCTACTTTGTCTCCTAATGCAATTAGGTaGTTCAGTTCTGGTTCAATGCAACGGAATATTTTG +
Preference number: 6 (lower is better)
Translates to: LKLSTLSPNAIR*FSSGSMQRNIL
Trigger: CAAAATATTCCGTTGCATTGAACCAGAACTGAACAACCTAATTGCATTAGGAGACAAAGTAGATAGCTTTAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000049469.13
ENSMUST00000087133.11
ENSMUST00000113493.8