Pregenerated sensors for EWSR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000009079Ensembl transcript IDs: ENSMUST00000063232.7, ENSMUST00000073308.11, ENSMUST00000079949.13, ENSMUST00000093365.12, ENSMUST00000102930.10
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCAAAGAGTTCTCAGCCTCTGCCTGAGAGTGGGATCAAAGGCATATaGAACCTTGACTGCTTACTTCTTCTACTCTGCTTAAAACCTTTC | + |
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Preference number: 1 (lower is better) Translates to: SKSSQPLPESGIKGI*NLDCLLLLLCLKPF Trigger: GAAAGGTTTTAAGCAGAGTAGAAGAAGTAAGCAGTCAAGGTTGCATATGCCTTTGATCCCACTCTCAGGCAGAGGCTGAGAACTCTTTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR-3UTR GCA 90 bp | CCTGGGACTCACTCTGTAGACCATGCTGGCCTTGAACTCAAAGAGTTCTCAGCCGGGATCAAAGGCATATaGAACCTTGACTGCTTACTT | + |
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Preference number: 2 (lower is better) Translates to: PGTHSVDHAGLELKEFSAGIKGI*NLDCLL Trigger: AAGTAAGCAGTCAAGGTTGCATATGCCTTTGATCCC...GGCTGAGAACTCTTTGAGTTCAAGGCCAGCATGGTCTACAGAGTGAGTCCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR-3UTR CCA 90 bp | CCTGGGACTCACTCTGTAGACCATGCTGGCCTTGAACTCAAAGAGTTCTCAGCCCAAATTATAAGGACATaGATCTGCAAATGGCACCTG | + |
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Preference number: 2 (lower is better) Translates to: PGTHSVDHAGLELKEFSAQIIRT*ICKWHL Trigger: CAGGTGCCATTTGCAGATCCATGTCCTTATAATTTG...GGCTGAGAACTCTTTGAGTTCAAGGCCAGCATGGTCTACAGAGTGAGTCCCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR-3UTR GCA 90 bp | CCTGGGACTCACTCTGTAGACCATGCTGGCCTTGAACTCAAAGAGTTCTCAGCCAGACAAACATATACATaGAGGGTGGCAAATCTGTTT | + |
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Preference number: 2 (lower is better) Translates to: PGTHSVDHAGLELKEFSARQTYT*RVANLF Trigger: AAACAGATTTGCCACCCTGCATGTATATGTTTGTCT...GGCTGAGAACTCTTTGAGTTCAAGGCCAGCATGGTCTACAGAGTGAGTCCCAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR-3UTR GCA 90 bp | ACTCTGCTTAAAACCTTTCTTAGGACCATGTTAAATGGCTTAGGGATAGCAAAGATAAGGACATGGATCTaGAAATGGCACCTGAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: TLLKTFLRTMLNGLGIAKIRTWI*KWHLKQ Trigger: CTGCTTCAGGTGCCATTTGCAGATCCATGTCCTTAT...CTTTGCTATCCCTAAGCCATTTAACATGGTCCTAAGAAAGGTTTTAAGCAGAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR-3UTR GCA 90 bp | ACTCTGCTTAAAACCTTTCTTAGGACCATGTTAAATGGCTTAGGGATAGCAAAGAGCTCTCCCCACATATaGACTAGGTTAATAAACACC | + |
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Preference number: 2 (lower is better) Translates to: TLLKTFLRTMLNGLGIAKSSPHI*TRLINT Trigger: GGTGTTTATTAACCTAGTGCATATGTGGGGAGAGCT...CTTTGCTATCCCTAAGCCATTTAACATGGTCCTAAGAAAGGTTTTAAGCAGAGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR GCA 72 bp | CAAATCTACAGGTTTAGTTTCAGCTCTCCCCACATATaGACTAGGTTAATAAACACCTCCATCCCTACACAG | + |
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Preference number: 3 (lower is better) Translates to: QIYRFSFSSPHI*TRLINTSIPTQ Trigger: CTGTGTAGGGATGGAGGTGTTTATTAACCTAGTGCATATGTGGGGAGAGCTGAAACTAAACCTGTAGATTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR GCA 72 bp | CCTGAGAGTGGGATCAAAGGCATATGCAACCTTGACTaGTTACTTCTTCTACTCTGCTTAAAACCTTTCTTA | + |
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Preference number: 3 (lower is better) Translates to: PESGIKGICNLD*LLLLLCLKPFL Trigger: TAAGAAAGGTTTTAAGCAGAGTAGAAGAAGTAAGCAGTCAAGGTTGCATATGCCTTTGATCCCACTCTCAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| 3UTR GCA 72 bp | TTATACCTCCTCTGGTTCATTACCAAACAACAAGTATaGAGTTACCAAAGTTACAGAAGGATTCCATTTATA | + |
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Preference number: 3 (lower is better) Translates to: LYLLWFITKQQV*SYQSYRRIPFI Trigger: TATAAATGGAATCCTTCTGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAGGAGGTATAA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR CCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCCTGCCCTCACGAGGTaGCATGCCTCCCCGCATGCT | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFPALTR*HASPHA Trigger: AGCATGCGGGGAGGCATGCCACCTCGTGAGGGCAGG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCAGTAGGGCCGGTCTCTaGGTTCCTGACGGTGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFSRAGL*VPDGAR Trigger: GCGAGCACCGTCAGGAACGCAGAGACCGGCCCTACT...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCAGGACCTCCACGAAGTaGTGGTGGCATCCCCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFRTSTK*WWHPPA Trigger: GGCAGGGGGATGCCACCACCACTTCGTGGAGGTCCT...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCTGTGGTCTGGTAGGTaGGGTGGCTGTTGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFLWSGR*GGCWLL Trigger: CAGCAGCCAACAGCCACCGCACCTACCAGACCACAG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | CCTGGGACTCACTCTGTAGACCATGCTGGCCTTGAACTCAAAGAGTTCTCAGCCTGGTCCCTTCTACAGTaGGAGGCTGTCCGTAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PGTHSVDHAGLELKEFSAWSLLQ*EAVRKK Trigger: CTTCTTACGGACAGCCTCCCACTGTAGAAGGGACCA...GGCTGAGAACTCTTTGAGTTCAAGGCCAGCATGGTCTACAGAGTGAGTCCCAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| CDS-3UTR CCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGCTGCTGGCCATAGGTaGGGTAGGCAGGCTGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKAAGHR*GRQAGC Trigger: GCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGCCTGCCCTCACGAGGTaGCATGCCTCCCCGCATGCT | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKPALTR*HASPHA Trigger: AGCATGCGGGGAGGCATGCCACCTCGTGAGGGCAGG...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTGTGGTGGCATCCCCCTaGCCTCACGAGGTGGCATGC | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHAVVASP*PHEVAC Trigger: GCATGCCACCTCGTGAGGGCAGGGGGATGCCACCAC...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGAGTAGGGCCGGTCTCTaGGTTCCTGACGGTGCTCGC | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKSRAGL*VPDGAR Trigger: GCGAGCACCGTCAGGAACGCAGAGACCGGCCCTACT...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTGCTGCTGGCCATAGGTaGGGTAGGCAGGCTGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHAAAGHR*GRQAGC Trigger: GCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGC...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGAGGACCTCCACGAAGTaGTGGTGGCATCCCCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKRTSTK*WWHPPA Trigger: GGCAGGGGGATGCCACCACCACTTCGTGGAGGTCCT...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGCAGAGGGGTTTCCTCTaGAGCCTCGGGGCCCTCTTG | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKQRGFL*SLGALL Trigger: CAAGAGGGCCCCGAGGCTCCAGAGGAAACCCCTCTG...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCAGGCTGGGTGCCATATaGAGTCTGAGCTGCGTAAGA | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFRLGAI*SLSCVR Trigger: TCTTACGCAGCTCAGACTGCATATGGCACCCAGCCT...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCTCCAAGCGAAGTTCTaGTTTCCACAGCCCGGATTG | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFLQAKF*FPQPGL Trigger: CAATCCGGGCTGTGGAAACCAGAACTTCGCTTGGAG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR TCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGTGGTCCTGTCGGAATaGACTCTGCTGCCCGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKVVLSE*TLLPVA Trigger: AGCTACGGGCAGCAGAGTTCATTCCGACAGGACCAC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCATATGCAGTCTGAGCTaGGTAAGAGGCCTGCGTTGT | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFICSLS*VRGLRC Trigger: ACAACGCAGGCCTCTTACGCAGCTCAGACTGCATAT...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGTAGGCAGGCTGGGTaGCATATGCAGTCTGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKGRQAG*HMQSEL Trigger: CAGCTCAGACTGCATATGGCACCCAGCCTGCCTACC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCTGTGGTCTGGTAGGTaGGGTGGCTGTTGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHALWSGR*GGCWLL Trigger: CAGCAGCCAACAGCCACCGCACCTACCAGACCACAG...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCTTCATCGGGATCTCTaGTCATGCCTCCACGATCAA | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFLHRDL*SCLHDQ Trigger: TTGATCGTGGAGGCATGAGCAGAGATCCCGATGAAG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073308.11 |
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| CDS-3UTR CCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGTTCCACAGCCCGGATTaGGACACTGCCAGTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKFHSPD*DTASLQ Trigger: CTGGAGACTGGCAGTGTCCCAATCCGGGCTGTGGAA...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR TCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTGTGGTCCTGTCGGAATaGACTCTGCTGCCCGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHAVVLSE*TLLPVA Trigger: AGCTACGGGCAGCAGAGTTCATTCCGACAGGACCAC...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | CCTGGGACTCACTCTGTAGACCATGCTGGCCTTGAACTCAAAGAGTTCTCAGCCGGAAAGCAATTCCCATaGAAGAATGAGCAGGATAGT | + |
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Preference number: 4 (lower is better) Translates to: PGTHSVDHAGLELKEFSAGKQFP*KNEQDS Trigger: ACTATCCTGCTCATTCTTGCATGGGAATTGCTTTCC...GGCTGAGAACTCTTTGAGTTCAAGGCCAGCATGGTCTACAGAGTGAGTCCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| CDS-3UTR GCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCTTCCACGGCAGCCTTTaGAGTTGGTGGATCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFFHGSL*SWWIFI Trigger: TATGAAGATCCACCAACTGCAAAGGCTGCCGTGGAA...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGCATGCCTCCCCGCATaGTGTTCATTGGAGGCTTCT | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKACLPA*CSLEAS Trigger: AGAAGCCTCCAATGAACAGCATGCGGGGAGGCATGC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTTTCCACAGCCCGGATTaGGACACTGCCAGTCTCCAG | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHAFHSPD*DTASLQ Trigger: CTGGAGACTGGCAGTGTCCCAATCCGGGCTGTGGAA...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | CTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACAGAAGGATTCCCTGTGGTCTGGTAGGTaGGGTGGCTGTTGGCTGCTG | + |
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Preference number: 4 (lower is better) Translates to: LVHYQTTSMQLPKLQKDSLWSGR*GGCWLL Trigger: CAGCAGCCAACAGCCACCGCACCTACCAGACCACAG...GGAATCCTTCTGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR CCA 90 bp | ATTCTAGAGTATTATACCTCCTCTGGTTCATTACCAAACAACAAGTATGCAGTTGCTGCTGGCCATAGGTaGGGTAGGCAGGCTGGGTGC | + |
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Preference number: 4 (lower is better) Translates to: ILEYYTSSGSLPNNKYAVAAGHR*GRQAGC Trigger: GCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGC...AACTGCATACTTGTTGTTTGGTAATGAACCAGAGGAGGTATAATACTCTAGAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR CCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCTTGTTACCATCCTGTaGTCTGGTAGGTGCGGTGGC | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHALVTIL*SGRCGG Trigger: GCCACCGCACCTACCAGACCACAGGATGGTAACAAG...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCAGCCTTTGCAGTTGGTaGATCTTCATAGGACACTGT | + |
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Preference number: 4 (lower is better) Translates to: LEALLVLHNDTEHAHKGFSLCSW*IFIGHC Trigger: ACAGTGTCCTATGAAGATCCACCAACTGCAAAGGCT...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGCAGCCTTTGCAGTTaGTGGATCTTCATAGGACAC | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKGSLCS*WIFIGH Trigger: GTGTCCTATGAAGATCCACCAACTGCAAAGGCTGCC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCTCCAAGCGAAGTTCTaGTTTCCACAGCCCGGATTG | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHALQAKF*FPQPGL Trigger: CAATCCGGGCTGTGGAAACCAGAACTTCGCTTGGAG...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR TCA 90 bp | TTATACCTCCTCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACGTGGTCCTGTCGGAATaGACTCTGCTGCCCGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: LYLLWFITKQQVCSYQSYVVLSE*TLLPVA Trigger: AGCTACGGGCAGCAGAGTTCATTCCGACAGGACCAC...GTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAGGAGGTATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR GCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTATATGCAGTCTGAGCTaGGTAAGAGGCCTGCGTTGT | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHAICSLS*VRGLRC Trigger: ACAACGCAGGCCTCTTACGCAGCTCAGACTGCATAT...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGTTCCACGGCAGCCTTTaGAGTTGGTGGATCTTCATA | + |
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Preference number: 4 (lower is better) Translates to: LQLEALLVLHNDTEHAHKFHGSL*SWWIFI Trigger: TATGAAGATCCACCAACTGCAAAGGCTGCCGTGGAA...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR GCA 90 bp | TATTATACCTCCTCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTGGTAGGCAGGCTGGGTaGCATATGCAGTCTGAGCTG | + |
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Preference number: 4 (lower is better) Translates to: YYTSSGSLPNNKYAVTKVGRQAG*HMQSEL Trigger: CAGCTCAGACTGCATATGGCACCCAGCCTGCCTACC...AACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAGGAGGTATAATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR GCA 90 bp | TCCTCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACAGAAGGAATATGCAGTCTGAGCTaGGTAAGAGGCCTGCGTTGT | + |
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Preference number: 4 (lower is better) Translates to: SSGSLPNNKYAVTKVTEGICSLS*VRGLRC Trigger: ACAACGCAGGCCTCTTACGCAGCTCAGACTGCATAT...TCCTTCTGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAGGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR CCA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTAGCCTTTGCAGTTGGTaGATCTTCATAGGACACTGT | + |
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Preference number: 4 (lower is better) Translates to: TLLQLEALLVLHNDTEHASLCSW*IFIGHC Trigger: ACAGTGTCCTATGAAGATCCACCAACTGCAAAGGCT...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR TCA 90 bp | TCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACAGAAGGATTCCTGCCGGCTGAGTACTaGGTACGGGTACTTTTTAAG | + |
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Preference number: 4 (lower is better) Translates to: SGSLPNNKYAVTKVTEGFLPAEY*VRVLFK Trigger: CTTAAAAAGTACCCGTACTCAGTACTCAGCCGGCAG...GAATCCTTCTGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR TCA 90 bp | TATTATACCTCCTCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTCATTATGCTGCCGGCTaGGTACTGAGTACGGGTACT | + |
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Preference number: 4 (lower is better) Translates to: YYTSSGSLPNNKYAVTKVHYAAG*VLSTGT Trigger: AGTACCCGTACTCAGTACTCAGCCGGCAGCATAATG...AACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAGGAGGTATAATA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR GCA 90 bp | TCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACAGAAGGATTCTCCCACTTTTCATTATaGTGCCGGCTGAGTACTGAG | + |
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Preference number: 4 (lower is better) Translates to: SGSLPNNKYAVTKVTEGFSHFSL*CRLSTE Trigger: CTCAGTACTCAGCCGGCAGCATAATGAAAAGTGGGA...GAATCCTTCTGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR GCA 90 bp | CTCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACAGAAGGATTCACTTTTCATTATGCTaGCGGCTGAGTACTGAGTAC | + |
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Preference number: 4 (lower is better) Translates to: LWFITKQQVCSYQSYRRIHFSLC*RLSTEY Trigger: GTACTCAGTACTCAGCCGGCAGCATAATGAAAAGTG...AATCCTTCTGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS-3UTR TCA 90 bp | ACTCTGCTTAAAACCTTTCTTAGGACCATGTTAAATGGCTTAGGGATAGCAAAGCAGGGTTTAAACAAATaGAAACACCTAAGGGTTAAC | + |
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Preference number: 4 (lower is better) Translates to: TLLKTFLRTMLNGLGIAKQGLNK*KHLRVN Trigger: GTTAACCCTTAGGTGTTTTCATTTGTTTAAACCCTG...CTTTGCTATCCCTAAGCCATTTAACATGGTCCTAAGAAAGGTTTTAAGCAGAGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063232.7 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGAGCCTCGGGGCCCTCTaGGAGGGAAGCCCCCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: LQLEALLVLHNDTEHAHKSLGAL*EGSPLC Trigger: ACAGAGGGGGCTTCCCTCCAAGAGGGCCCCGAGGCT...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTAGCCTCGGGGCCCTCTaGGAGGGAAGCCCCCTCTGT | + |
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Preference number: 5 (lower is better) Translates to: TLLQLEALLVLHNDTEHASLGAL*EGSPLC Trigger: ACAGAGGGGGCTTCCCTCCAAGAGGGCCCCGAGGCT...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCCCGCATGCTGTTCATaGGAGGCTTCTTTCGGGCAA | + |
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Preference number: 5 (lower is better) Translates to: LEALLVLHNDTEHAHKGFPACCS*EASFGQ Trigger: TTGCCCGAAAGAAGCCTCCAATGAACAGCATGCGGG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCTAGTCTCAGCAGGCTaGTTACCATCCTGTGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: LEALLVLHNDTEHAHKGFLVSAG*LPSCGL Trigger: CAGACCACAGGATGGTAACAAGCCTGCTGAGACTAG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCCGGCAGCCTTTGCAGTaGGTGGATCTTCATAGGACA | + |
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Preference number: 5 (lower is better) Translates to: LEALLVLHNDTEHAHKGFRQPLQ*VDLHRT Trigger: TGTCCTATGAAGATCCACCAACTGCAAAGGCTGCCG...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCGCTCTGTTGGCTATATaGACTTGGAGCCTGGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: LEALLVLHNDTEHAHKGFALLAI*TWSLAV Trigger: TACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGC...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGTTTCCACAGCCCGGATaGGGACACTGCCAGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: LQLEALLVLHNDTEHAHKFPQPG*GHCQSP Trigger: TGGAGACTGGCAGTGTCCCAATCCGGGCTGTGGAAA...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGGTTCGGTTGTCCAGTTCTCTaGTTCATCTTGACAACCCCA | + |
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Preference number: 5 (lower is better) Translates to: LEALLVLHNDTEHAHKGFGCPVL*FILTTP Trigger: TGGGGTTGTCAAGATGAACAAGAGAACTGGACAACC...GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCTAGTCTCAGCAGGCTaGTTACCATCCTGTGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: TLLQLEALLVLHNDTEHALVSAG*LPSCGL Trigger: CAGACCACAGGATGGTAACAAGCCTGCTGAGACTAG...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGCTCTGTTGGCTATATaGACTTGGAGCCTGGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: LQLEALLVLHNDTEHAHKALLAI*TWSLAV Trigger: TACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | ACATTGTTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCGGCAGCCTTTGCAGTaGGTGGATCTTCATAGGACA | + |
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Preference number: 5 (lower is better) Translates to: TLLQLEALLVLHNDTEHARQPLQ*VDLHRT Trigger: TGTCCTATGAAGATCCACCAACTGCAAAGGCTGCCG...AGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGAGGCCCTCTTGGTTCTCCACAATGATACTGAGCATGCTCACAAGGGTTGTCCAGTTCTCTaGTTCATCTTGACAACCCCA | + |
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Preference number: 5 (lower is better) Translates to: LQLEALLVLHNDTEHAHKGCPVL*FILTTP Trigger: TGGGGTTGTCAAGATGAACAAGAGAACTGGACAACC...CTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 |
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| CDS-3UTR CAA 90 bp | TATACCTCCTCTGGTTCATTACCAAACAACAAGTATGCAGTTACCAAAGTTACACTAGTCTCAGCAGGCTaGTTACCATCCTGTGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: YTSSGSLPNNKYAVTKVTLVSAG*LPSCGL Trigger: CAGACCACAGGATGGTAACAAGCCTGCTGAGACTAG...TGTAACTTTGGTAACTGCATACTTGTTGTTTGGTAATGAACCAGAGGAGGTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000093365.12 |
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| CDS GCA 72 bp | TTGGCTGCTGGCCATAGGTGGGGTAGGCAGGCTGGGTaGCATATGCAGTCTGAGCTGCGTAAGAGGCCTGCG | + |
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Preference number: 6 (lower is better) Translates to: LAAGHRWGRQAG*HMQSELRKRPA Trigger: CGCAGGCCTCTTACGCAGCTCAGACTGCATATGGCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGCCAA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 ENSMUST00000093365.12 ENSMUST00000102930.10 |
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| CDS CCA 72 bp | GTTACCATCCTGTGGTCTGGTAGGTGCGGTGGCTGTTaGCTGCTGGCCATAGGTGGGGTAGGCAGGCTGGGT | + |
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Preference number: 6 (lower is better) Translates to: VTILWSGRCGGC*LLAIGGVGRLG Trigger: ACCCAGCCTGCCTACCCCACCTATGGCCAGCAGCCAACAGCCACCGCACCTACCAGACCACAGGATGGTAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000073308.11 ENSMUST00000079949.13 ENSMUST00000093365.12 ENSMUST00000102930.10 |
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