Pregenerated sensors for EVA1B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050212Ensembl transcript IDs: ENSMUST00000052876.3, ENSMUST00000106150.3, ENSMUST00000106152.3
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | GGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATaGAGAGTGCTTAGCAGGCGGCGATGTGACGCCCAA | + |
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Preference number: 3 (lower is better) Translates to: GAGILFPPTPAL*RVLSRRRCDAQ Trigger: TTGGGCGTCACATCGCCGCCTGCTAAGCACTCTTCATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| 3UTR-3UTR CAA 90 bp | TATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTAGGCAGAGGCAGTTTTTaGAAGGCCCTGAGGCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: YYREKVGAGILFPPTPALGRGSF*KALRQS Trigger: GGACTGCCTCAGGGCCTTCAAAAAACTGCCTCTGCC...TAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| 3UTR-3UTR CAA 90 bp | ATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGGCAGAGGCAGTTTTTaGAAGGCCCTGAGGCAGTCC | + |
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Preference number: 3 (lower is better) Translates to: IIGRRWELAFFSHPHLPYGRGSF*KALRQS Trigger: GGACTGCCTCAGGGCCTTCAAAAAACTGCCTCTGCC...ATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | TTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGCTTCCGGCTCTAGGGTaGTGCTCCGGGGGTCCCGGC | + |
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Preference number: 4 (lower is better) Translates to: LSGEGGSWHSFPTHTCPMLPALG*CSGGPG Trigger: GCCGGGACCCCCGGAGCAGCACCCTAGAGCCGGAAG...CATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | GGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGAAGAGTCTTCCGGCTCTAGGGTaGTGCTCCGGGGGTCCCGGC | + |
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Preference number: 4 (lower is better) Translates to: GEGGSWHSFPTHTCPMKSLPALG*CSGGPG Trigger: GCCGGGACCCCCGGAGCAGCACCCTAGAGCCGGAAG...ACTCTTCATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | CATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTTCCGGCTCTAGGGTaGTGCTCCGGGGGTCCCGGC | + |
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Preference number: 4 (lower is better) Translates to: HYYREKVGAGILFPPTPALPALG*CSGGPG Trigger: GCCGGGACCCCCGGAGCAGCACCCTAGAGCCGGAAG...GGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | TTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGGCCCGTCGGGCTCTGTaGACAGCTCCTGGCCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LSGEGGSWHSFPTHTCPMARRAL*TAPGPA Trigger: TGCAGGGCCAGGAGCTGTCCACAGAGCCCGACGGGC...CATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | GGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGAAGAGTGGTCTGGCTGCCCAGTaGGCCAGATCTCCCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: GEGGSWHSFPTHTCPMKSGLAAQ*ARSPAG Trigger: TCCTGCGGGAGATCTGGCGCACTGGGCAGCCAGACC...ACTCTTCATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | TTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGGGTCTGGCTGCCCAGTaGGCCAGATCTCCCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: LSGEGGSWHSFPTHTCPMGLAAQ*ARSPAG Trigger: TCCTGCGGGAGATCTGGCGCACTGGGCAGCCAGACC...CATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | TTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGCCCAGCAGGTCTGGCTaGCCAGTGCGCCAGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: LSGEGGSWHSFPTHTCPMPSRSG*PVRQIS Trigger: GGAGATCTGGCGCACTGGGCAGCCAGACCTGCTGGG...CATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | CATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCGACAGCTCCTGGCCCTaGAGCGTGTCATCGGGACCC | + |
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Preference number: 4 (lower is better) Translates to: HYYREKVGAGILFPPTPADSSWP*SVSSGP Trigger: GGGTCCCGATGACACGCTGCAGGGCCAGGAGCTGTC...GGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | ATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCGACAGCTCCTGGCCCTaGAGCGTGTCATCGGGACCC | + |
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Preference number: 4 (lower is better) Translates to: IIIGRRWELAFFSHPHLPDSSWP*SVSSGP Trigger: GGGTCCCGATGACACGCTGCAGGGCCAGGAGCTGTC...GGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | ATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGGTCTGGCTGCCCAGTaGGCCAGATCTCCCGCAGGA | + |
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Preference number: 4 (lower is better) Translates to: IIGRRWELAFFSHPHLPYGLAAQ*ARSPAG Trigger: TCCTGCGGGAGATCTGGCGCACTGGGCAGCCAGACC...ATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR GCA 90 bp | CATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCCCAGCAGGTCTGGCTaGCCAGTGCGCCAGATCTCC | + |
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Preference number: 4 (lower is better) Translates to: HYYREKVGAGILFPPTPAPSRSG*PVRQIS Trigger: GGAGATCTGGCGCACTGGGCAGCCAGACCTGCTGGG...GGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | TTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGTCTGTGGACAGCTCCTaGCCCTGCAGCGTGTCATCG | + |
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Preference number: 4 (lower is better) Translates to: LSGEGGSWHSFPTHTCPMSVDSS*PCSVSS Trigger: CGATGACACGCTGCAGGGCCAGGAGCTGTCCACAGA...CATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGAAGAGTTCTGTGGACAGCTCCTaGCCCTGCAGCGTGTCATCG | + |
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Preference number: 4 (lower is better) Translates to: GEGGSWHSFPTHTCPMKSSVDSS*PCSVSS Trigger: CGATGACACGCTGCAGGGCCAGGAGCTGTCCACAGA...ACTCTTCATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | TATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTAACTGCCCAGCAGGTCTaGCTGCCCAGTGCGCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: YYREKVGAGILFPPTPALTAQQV*LPSAPD Trigger: ATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGT...TAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | CATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCACTGCCCAGCAGGTCTaGCTGCCCAGTGCGCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: HYYREKVGAGILFPPTPATAQQV*LPSAPD Trigger: ATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGT...GGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR TCA 90 bp | ATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATCTGCCAGGCTGTTGCTaGGTAGCTCCATGTCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: IIGRRWELAFFSHPHLPYLPGCC*VAPCPF Trigger: GAAGGGACATGGAGCTACTCAGCAACAGCCTGGCAG...ATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR TCA 90 bp | TATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTACTGCCAGGCTGTTGCTaGGTAGCTCCATGTCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: YYREKVGAGILFPPTPALLPGCC*VAPCPF Trigger: GAAGGGACATGGAGCTACTCAGCAACAGCCTGGCAG...TAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR TCA 90 bp | CATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTGCCAGGCTGTTGCTaGGTAGCTCCATGTCCCTTC | + |
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Preference number: 4 (lower is better) Translates to: HYYREKVGAGILFPPTPALPGCC*VAPCPF Trigger: GAAGGGACATGGAGCTACTCAGCAACAGCCTGGCAG...GGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGAAGAGTGACCCAGCCTCGTCATaGTGTCCTCATCTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: GEGGSWHSFPTHTCPMKSDPASS*CPHLPH Trigger: ATGAGGAAGATGAGGACACCATGACGAGGCTGGGTC...ACTCTTCATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | CATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCGACCCAGCCTCGTCATaGTGTCCTCATCTTCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: HYYREKVGAGILFPPTPADPASS*CPHLPH Trigger: ATGAGGAAGATGAGGACACCATGACGAGGCTGGGTC...GGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CCA 90 bp | CTTTCATTGGTCATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACACTGCCCAGCAGGTCTaGCTGCCCAGTGCGCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: LSLVIIIGRRWELAFFSHTAQQV*LPSAPD Trigger: ATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGT...GTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAATGACCAATGAAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| 3UTR CAA 72 bp | ATAGCACCAAAGAGATTTGGGGGCAGAGGCAGTTTTTaGAAGGCCCTGAGGCAGTCCCATATCCAGTACTCT | + |
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Preference number: 4 (lower is better) Translates to: IAPKRFGGRGSF*KALRQSHIQYS Trigger: AGAGTACTGGATATGGGACTGCCTCAGGGCCTTCAAAAAACTGCCTCTGCCCCCAAATCTCTTTGGTGCTAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS GCA 90 bp | GCATTCGTCCCAGCGTGGCCGTGGCTCCGGGCCCGAGCGTGCCACTaGCCAGCAGGTCTGGCTGCCCAGTGCGCCAGATCTCCCGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: AFVPAWPWLRARACH*PAGLAAQCARSPAG Trigger: TCCTGCGGGAGATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGTGGCACGCTCGGGCCCGGAGCCACGGCCACGCTGGGACGAATGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS CCA 90 bp | CGTGGCCGTGGCTCCGGGCCCGAGCGTGCCACTGCCCAGCAGGTCTaGCTGCCCAGTGCGCCAGATCTCCCGCAGGATTCGTTCACGCTC | + |
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Preference number: 5 (lower is better) Translates to: RGRGSGPERATAQQV*LPSAPDLPQDSFTL Trigger: GAGCGTGAACGAATCCTGCGGGAGATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGTGGCACGCTCGGGCCCGGAGCCACGGCCACG 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS GCA 90 bp | TTGACACTAAGGGGCCCGTCGGGCTCTGTGGACAGCTCCTGGCCCTaGAGCGTGTCATCGGGACCCAGCCTCGTCATGGTGTCCTCATCT | + |
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Preference number: 5 (lower is better) Translates to: LTLRGPSGSVDSSWP*SVSSGPSLVMVSSS Trigger: AGATGAGGACACCATGACGAGGCTGGGTCCCGATGACACGCTGCAGGGCCAGGAGCTGTCCACAGAGCCCGACGGGCCCCTTAGTGTCAA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS CCA 90 bp | AAGACATTGACACTAAGGGGCCCGTCGGGCTCTGTGGACAGCTCCTaGCCCTGCAGCGTGTCATCGGGACCCAGCCTCGTCATGGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: KTLTLRGPSGSVDSS*PCSVSSGPSLVMVS Trigger: GGACACCATGACGAGGCTGGGTCCCGATGACACGCTGCAGGGCCAGGAGCTGTCCACAGAGCCCGACGGGCCCCTTAGTGTCAATGTCTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CAA 90 bp | TTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGGCTGACGTGAAGACATaGACACTAAGGGGCCCGTCG | + |
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Preference number: 5 (lower is better) Translates to: LSGEGGSWHSFPTHTCPMADVKT*TLRGPS Trigger: CGACGGGCCCCTTAGTGTCAATGTCTTCACGTCAGC...CATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CAA 90 bp | ATTATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCGCTGACGTGAAGACATaGACACTAAGGGGCCCGTCG | + |
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Preference number: 5 (lower is better) Translates to: IIIGRRWELAFFSHPHLPADVKT*TLRGPS Trigger: CGACGGGCCCCTTAGTGTCAATGTCTTCACGTCAGC...GGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAATAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS-3UTR CAA 90 bp | ATTATCGGGAGAAGGTGGGAGCTGGCATTCTTTTCCCACCCACACCTGCCCTATGCTGACGTGAAGACATaGACACTAAGGGGCCCGTCG | + |
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Preference number: 5 (lower is better) Translates to: IIGRRWELAFFSHPHLPYADVKT*TLRGPS Trigger: CGACGGGCCCCTTAGTGTCAATGTCTTCACGTCAGC...ATAGGGCAGGTGTGGGTGGGAAAAGAATGCCAGCTCCCACCTTCTCCCGATAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS GCA 72 bp | CCAGCGTGGCCGTGGCTCCGGGCCCGAGCGTGCCACTaGCCAGCAGGTCTGGCTGCCCAGTGCGCCAGATCT | + |
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Preference number: 6 (lower is better) Translates to: PAWPWLRARACH*PAGLAAQCARS Trigger: AGATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGTGGCACGCTCGGGCCCGGAGCCACGGCCACGCTGG 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS CCA 72 bp | GGCTCCGGGCCCGAGCGTGCCACTGCCCAGCAGGTCTaGCTGCCCAGTGCGCCAGATCTCCCGCAGGATTCG | + |
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Preference number: 6 (lower is better) Translates to: GSGPERATAQQV*LPSAPDLPQDS Trigger: CGAATCCTGCGGGAGATCTGGCGCACTGGGCAGCCAGACCTGCTGGGCAGTGGCACGCTCGGGCCCGGAGCC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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| CDS CAA 72 bp | TGTGCCCGCTCTAGCTCCTCTGCTGACGTGAAGACATaGACACTAAGGGGCCCGTCGGGCTCTGTGGACAGC | + |
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Preference number: 6 (lower is better) Translates to: CARSSSSADVKT*TLRGPSGSVDS Trigger: GCTGTCCACAGAGCCCGACGGGCCCCTTAGTGTCAATGTCTTCACGTCAGCAGAGGAGCTAGAGCGGGCACA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000052876.3 ENSMUST00000106150.3 ENSMUST00000106152.3 |
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