Pregenerated sensors for EVA1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035104Ensembl transcript IDs: ENSMUST00000042974.15, ENSMUST00000149023.2, ENSMUST00000150976.8
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCCTGAAAGCATTGGGCTGGTGTGCCCAGGTGGCTGTCAAGACCTaGAAGAGTAGATGCCACTGCCTGGGTTGTCTATTTCTCCAGAGG | + |
|
Preference number: 1 (lower is better) Translates to: GLKALGWCAQVAVKT*KSRCHCLGCLFLQR Trigger: CCTCTGGAGAAATAGACAACCCAGGCAGTGGCATCTACTCTTTCAGGTCTTGACAGCCACCTGGGCACACCAGCCCAATGCTTTCAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR-3UTR GCA 90 bp | CCCATCGCTGTCACATGGTTGGAGAGGAATTCCTCAGCACCTTTCCAAGGCCTGCTCATCCCGGCGATCTaGAGAGGTTCTGGGGTGCAC | + |
|
Preference number: 2 (lower is better) Translates to: PIAVTWLERNSSAPFQGLLIPAI*RGSGVH Trigger: GTGCACCCCAGAACCTCTGCAGATCGCCGGGATGAG...CAGGCCTTGGAAAGGTGCTGAGGAATTCCTCTCCAACCATGTGACAGCGATGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR-3UTR CCA 90 bp | ATTTTCTGGGTTACGGTCACCCTGATGCCCCAGCTCTCCAGCTATGAGATTTTTCCTGGGGAAACAGGCTaGCTGGCGCTATGCACTCTC | + |
|
Preference number: 2 (lower is better) Translates to: IFWVTVTLMPQLSSYEIFPGETG*LALCTL Trigger: GAGAGTGCATAGCGCCAGCCAGCCTGTTTCCCCAGG...AAAAATCTCATAGCTGGAGAGCTGGGGCATCAGGGTGACCGTAACCCAGAAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR CAA 90 bp | AGCGCTTCGGAAGGACTTTCAGCTTGTCCCATCGCTGTCACATGGTaGGAGAGGAATTCCTCAGCACCTTTCCAAGGCCTGAAAGCATTG | + |
|
Preference number: 2 (lower is better) Translates to: SASEGLSACPIAVTW*ERNSSAPFQGLKAL Trigger: CAATGCTTTCAGGCCTTGGAAAGGTGCTGAGGAATTCCTCTCCAACCATGTGACAGCGATGGGACAAGCTGAAAGTCCTTCCGAAGCGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR GCA 72 bp | CAGAGCTGGTTTCAGCTCTTGCACATCGTCCTTGCCTaGAGAACCCACTCTCATCCCGGCGATCTGCAGAGG | + |
|
Preference number: 3 (lower is better) Translates to: QSWFQLLHIVLA*RTHSHPGDLQR Trigger: CCTCTGCAGATCGCCGGGATGAGAGTGGGTTCTGCAGGCAAGGACGATGTGCAAGAGCTGAAACCAGCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR TCA 72 bp | GGTTGGAGAGGAATTCCTCAGCACCTTTCCAAGGCCTaGAAGCATTGGGCTGGTGTGCCCAGGTGGCTGTCA | + |
|
Preference number: 3 (lower is better) Translates to: GWRGIPQHLSKA*KHWAGVPRWLS Trigger: TGACAGCCACCTGGGCACACCAGCCCAATGCTTTCAGGCCTTGGAAAGGTGCTGAGGAATTCCTCTCCAACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR TCA 72 bp | GCATTGGGCTGGTGTGCCCAGGTGGCTGTCAAGACCTaGAAGAGTAGATGCCACTGCCTGGGTTGTCTATTT | + |
|
Preference number: 3 (lower is better) Translates to: ALGWCAQVAVKT*KSRCHCLGCLF Trigger: AAATAGACAACCCAGGCAGTGGCATCTACTCTTTCAGGTCTTGACAGCCACCTGGGCACACCAGCCCAATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR CCA 72 bp | AAGCAAATCCCCATTCTCCTGGGGAAACAGGCTGGCTaGCGCTATGCACTCTCCAGCCACATTAACAGAGCT | + |
|
Preference number: 3 (lower is better) Translates to: KQIPILLGKQAG*RYALSSHINRA Trigger: AGCTCTGTTAATGTGGCTGGAGAGTGCATAGCGCCAGCCAGCCTGTTTCCCCAGGAGAATGGGGATTTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR-3UTR CAA 90 bp | AAGGACTTTCAGCTTGTCCCATCGCTGTCACATGGTTGGAGAGGAATTCCTCAGTCTTGCACATCGTCCTaGCCTGCAGAACCCACTCTC | + |
|
Preference number: 3 (lower is better) Translates to: KDFQLVPSLSHGWRGIPQSCTSS*PAEPTL Trigger: GAGAGTGGGTTCTGCAGGCAAGGACGATGTGCAAGA...CTGAGGAATTCCTCTCCAACCATGTGACAGCGATGGGACAAGCTGAAAGTCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | TTGCACATCGTCCTTGCCTGCAGAACCCACTCTCATCCCGGCGATCTGCAGAGGCTCCTCCAAGCGCTGTaGGCGCTCCAGCTCCTCTGC | + |
|
Preference number: 4 (lower is better) Translates to: LHIVLACRTHSHPGDLQRLLQAL*ALQLLC Trigger: GCAGAGGAGCTGGAGCGCGCACAGCGCTTGGAGGAG...CCTCTGCAGATCGCCGGGATGAGAGTGGGTTCTGCAGGCAAGGACGATGTGCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | CCCATCGCTGTCACATGGTTGGAGAGGAATTCCTCAGCACCTTTCCAAGGCCTGGGTTCAGGCTCCTGGTaGCCGGCACCTCAGGCTGCC | + |
|
Preference number: 4 (lower is better) Translates to: PIAVTWLERNSSAPFQGLGSGSW*PAPQAA Trigger: GGCAGCCTGAGGTGCCGGGCACCAGGAGCCTGAACC...CAGGCCTTGGAAAGGTGCTGAGGAATTCCTCTCCAACCATGTGACAGCGATGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | AAAGCAAATCCCCATTCTCCTGGGGAAACAGGCTGGCTGGCGCTATGCACTCTCCGAAGCGGCGGTGTCTaGGCACCGAGAGGTCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: KANPHSPGETGWLALCTLRSGGV*APRGQR Trigger: CCTCTGACCTCTCGGTGCGCAGACACCGCCGCTTCG...GAGAGTGCATAGCGCCAGCCAGCCTGTTTCCCCAGGAGAATGGGGATTTGCTTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR CCA 90 bp | CTGGTTTCAGCTCTTGCACATCGTCCTTGCCTGCAGAACCCACTCTCATCCCGGATCGGTTCAGGCTCCTaGTGCCCGGCACCTCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LVSALAHRPCLQNPLSSRIGSGS*CPAPQA Trigger: AGCCTGAGGTGCCGGGCACCAGGAGCCTGAACCGAT...CCGGGATGAGAGTGGGTTCTGCAGGCAAGGACGATGTGCAAGAGCTGAAACCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR CCA 90 bp | AAAGCAAATCCCCATTCTCCTGGGGAAACAGGCTGGCTGGCGCTATGCACTCTCCGCCGGCAGTCCGTGTaGCAGGAGATCCTCATCACC | + |
|
Preference number: 4 (lower is better) Translates to: KANPHSPGETGWLALCTLRRQSV*QEILIT Trigger: GGTGATGAGGATCTCCTGCCACACGGACTGCCGGCG...GAGAGTGCATAGCGCCAGCCAGCCTGTTTCCCCAGGAGAATGGGGATTTGCTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | GAAGGACTTTCAGCTTGTCCCATCGCTGTCACATGGTTGGAGAGGAATTCCTCACCCGGCACCTCAGGCTaGCCGTTCATCCAGATCTCC | + |
|
Preference number: 4 (lower is better) Translates to: EGLSACPIAVTWLERNSSPGTSG*PFIQIS Trigger: GGAGATCTGGATGAACGGGCAGCCTGAGGTGCCGGG...TGAGGAATTCCTCTCCAACCATGTGACAGCGATGGGACAAGCTGAAAGTCCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR TCA 90 bp | ATTTTCTGGGTTACGGTCACCCTGATGCCCCAGCTCTCCAGCTATGAGATTTTTCTGCCAGGATGCTGCTaGGCAGAGCCATTCCCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: IFWVTVTLMPQLSSYEIFLPGCC*AEPFPR Trigger: CCTTGGGAATGGCTCTGCTCAGCAGCATCCTGGCAG...AAAAATCTCATAGCTGGAGAGCTGGGGCATCAGGGTGACCGTAACCCAGAAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | CACATGGTTGGAGAGGAATTCCTCAGCACCTTTCCAAGGCCTGAAAGCATTGGGGCGCTCCAGCTCCTCTaGAGAGGTGAACACGTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: HMVGEEFLSTFPRPESIGALQLL*RGEHVL Trigger: AAGAACGTGTTCACCTCTGCAGAGGAGCTGGAGCGC...CCCAATGCTTTCAGGCCTTGGAAAGGTGCTGAGGAATTCCTCTCCAACCATGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| 3UTR CAA 72 bp | GAAGGACTTTCAGCTTGTCCCATCGCTGTCACATGGTaGGAGAGGAATTCCTCAGCACCTTTCCAAGGCCTG | + |
|
Preference number: 4 (lower is better) Translates to: EGLSACPIAVTW*ERNSSAPFQGL Trigger: CAGGCCTTGGAAAGGTGCTGAGGAATTCCTCTCCAACCATGTGACAGCGATGGGACAAGCTGAAAGTCCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | AAAGCAAATCCCCATTCTCCTGGGGAAACAGGCTGGCTGGCGCTATGCACTCTCTCAGGAACAGGCCAATaGACACTCCAGAGACAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: KANPHSPGETGWLALCTLSGTGQ*TLQRQS Trigger: ACTTTGTCTCTGGAGTGTGCATTGGCCTGTTCCTGA...GAGAGTGCATAGCGCCAGCCAGCCTGTTTCCCCAGGAGAATGGGGATTTGCTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR GCA 90 bp | CTCTTCACGGAGTCCTTTAGAAAATTACATTTTCTGGGTTACGGTCACCCTGATCATCCTCGCTGTCGCTaGTGTCGCTGCACTCGCGGT | + |
|
Preference number: 4 (lower is better) Translates to: LFTESFRKLHFLGYGHPDHPRCR*CRCTRG Trigger: ACCGCGAGTGCAGCGACAGCAGCGACAGCGAGGATG...ATCAGGGTGACCGTAACCCAGAAAATGTAATTTTCTAAAGGACTCCGTGAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS-3UTR CCA 90 bp | CTCTTCACGGAGTCCTTTAGAAAATTACATTTTCTGGGTTACGGTCACCCTGATTTCCCAAGGGCTCCGTaGCCACTGGTTCCGTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LFTESFRKLHFLGYGHPDFPRAP*PLVPCW Trigger: CCAGCACGGAACCAGTGGCCACGGAGCCCTTGGGAA...ATCAGGGTGACCGTAACCCAGAAAATGTAATTTTCTAAAGGACTCCGTGAAGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000042974.15 |
||
| CDS CCA 90 bp | CGGTCCTGCAAGCACCTCCTCCGGGGACCTCGCCGGCAGTCCGTGTaGCAGGAGATCCTCATCACCAAGGCGGCCAAGGTCAGGAACAGG | + |
|
Preference number: 5 (lower is better) Translates to: RSCKHLLRGPRRQSV*QEILITKAAKVRNR Trigger: CCTGTTCCTGACCTTGGCCGCCTTGGTGATGAGGATCTCCTGCCACACGGACTGCCGGCGAGGTCCCCGGAGGAGGTGCTTGCAGGACCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 |
||
| CDS GCA 90 bp | AGGAGATCCTCATCACCAAGGCGGCCAAGGTCAGGAACAGGCCAATaGACACTCCAGAGACAAAGTACAGAGCGGCTCGCTCAGGGTTTT | + |
|
Preference number: 5 (lower is better) Translates to: RRSSSPRRPRSGTGQ*TLQRQSTERLAQGF Trigger: AAAACCCTGAGCGAGCCGCTCTGTACTTTGTCTCTGGAGTGTGCATTGGCCTGTTCCTGACCTTGGCCGCCTTGGTGATGAGGATCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 ENSMUST00000150976.8 |
||
| CDS TCA 90 bp | GCACACTCCAGAGACAAAGTACAGAGCGGCTCGCTCAGGGTTTTCTaGGATATAAGACCAGGCTGCCAGGATGCTGCTGAGCAGAGCCAT | + |
|
Preference number: 5 (lower is better) Translates to: AHSRDKVQSGSLRVF*DIRPGCQDAAEQSH Trigger: ATGGCTCTGCTCAGCAGCATCCTGGCAGCCTGGTCTTATATCTCAGAAAACCCTGAGCGAGCCGCTCTGTACTTTGTCTCTGGAGTGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 ENSMUST00000150976.8 |
||
| CDS CCA 72 bp | AAGCACCTCCTCCGGGGACCTCGCCGGCAGTCCGTGTaGCAGGAGATCCTCATCACCAAGGCGGCCAAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: KHLLRGPRRQSV*QEILITKAAKV Trigger: GACCTTGGCCGCCTTGGTGATGAGGATCTCCTGCCACACGGACTGCCGGCGAGGTCCCCGGAGGAGGTGCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 |
||
| CDS GCA 72 bp | CGTTCTTATTCAAAGTCCTCTCGAAGCGGCGGTGTCTaGGCACCGAGAGGTCAGAGGCTGTGTCCTCGCTAC | + |
|
Preference number: 6 (lower is better) Translates to: RSYSKSSRSGGV*APRGQRLCPRY Trigger: GTAGCGAGGACACAGCCTCTGACCTCTCGGTGCGCAGACACCGCCGCTTCGAGAGGACTTTGAATAAGAACG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 |
||
| CDS TCA 72 bp | TTTCTGAGATATAAGACCAGGCTGCCAGGATGCTGCTaGGCAGAGCCATTCCCAAGGGCTCCGTGGCCACTG | + |
|
Preference number: 6 (lower is better) Translates to: FLRYKTRLPGCC*AEPFPRAPWPL Trigger: CAGTGGCCACGGAGCCCTTGGGAATGGCTCTGCTCAGCAGCATCCTGGCAGCCTGGTCTTATATCTCAGAAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 ENSMUST00000150976.8 |
||
| CDS TCA 72 bp | AGAGACAAAGTACAGAGCGGCTCGCTCAGGGTTTTCTaGGATATAAGACCAGGCTGCCAGGATGCTGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: RDKVQSGSLRVF*DIRPGCQDAAE Trigger: CTCAGCAGCATCCTGGCAGCCTGGTCTTATATCTCAGAAAACCCTGAGCGAGCCGCTCTGTACTTTGTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000042974.15 ENSMUST00000149023.2 ENSMUST00000150976.8 |
||