RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ETFBL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000107482

Ensembl transcript IDs: ENSMUST00000203633.3, ENSMUST00000204680.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGGGGTaGTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCCC +
Preference number: 1 (lower is better)
Translates to: ESGIPAEASEPGGWG*WLEETFETKSREEP
Trigger: GGGCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR CCA 90 bp TCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGGGGTGCTaGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCCCATG +
Preference number: 1 (lower is better)
Translates to: SGIPAEASEPGGWGC*LEETFETKSREEPM
Trigger: CATGGGCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR CCA 90 bp CGGTTGGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTaGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAG +
Preference number: 1 (lower is better)
Translates to: RLESGIPAEASEPGG*GCWLEETFETKSRE
Trigger: CTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR CCA 90 bp ATAATCCAGGCACATGGCTTGAATTCAGCCCCTGAGGAAACCGGTTaGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGG +
Preference number: 1 (lower is better)
Translates to: IIQAHGLNSAPEETG*NQGFQQRLLNLAAG
Trigger: CCCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTTTCCTCAGGGGCTGAATTCAAGCCATGTGCCTGGATTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR TCA 90 bp ACATTGGTCCTGAATAATCCAGGCACATGGCTTGAATTCAGCCCCTaGGGAAACCGGTTGGAATCAGGGATTCCAGCAGAGGCTTCTGAA +
Preference number: 1 (lower is better)
Translates to: TLVLNNPGTWLEFSP*GNRLESGIPAEASE
Trigger: TTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTTTCCTCAGGGGCTGAATTCAAGCCATGTGCCTGGATTATTCAGGACCAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR-3UTR CCA 90 bp CCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCCCAAAGCTGGCTaGAGGGCAAGGAGCTCAGCT +
Preference number: 2 (lower is better)
Translates to: PGGWGCWLEETFETKSREEPKAG*RARSSA
Trigger: AGCTGAGCTCCTTGCCCTCCAGCCAGCTTTGGGCTC...CTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
3UTR-3UTR CCA 90 bp AACCGGTTGGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGGGGGGAGGAGGCAGAGGGTaGCTGAGAGCCCAAAGCTGG +
Preference number: 2 (lower is better)
Translates to: NRLESGIPAEASEPGGWGGGGRG*LRAQSW
Trigger: CCAGCTTTGGGCTCTCAGCCACCCTCTGCCTCCTCC...CCCCCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTT
62% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR CAA 90 bp AGGCTTCTGAACCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTaGAAACAAAGTCCCGAGAGGAGCCCATGGAGTGTGAGGAGGAGG +
Preference number: 2 (lower is better)
Translates to: RLLNLAAGGAGWRRR*KQSPERSPWSVRRR
Trigger: CCTCCTCCTCACACTCCATGGGCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTTCAGAAGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR-3UTR CCA 90 bp GGAAACCGGTTGGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGGAGCCCAAAGCTGGCTaGAGGGCAAGGAGCTCAGCT +
Preference number: 2 (lower is better)
Translates to: GNRLESGIPAEASEPGGWEPKAG*RARSSA
Trigger: AGCTGAGCTCCTTGCCCTCCAGCCAGCTTTGGGCTC...CCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR-3UTR TCA 90 bp GAAACCGGTTGGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGGCAAGGAGCTCAGCTCTaGAGGCCAGGAGTAGGAAGG +
Preference number: 2 (lower is better)
Translates to: ETGWNQGFQQRLLNLAAGQGAQL*RPGVGR
Trigger: CCTTCCTACTCCTGGCCTTCAGAGCTGAGCTCCTTG...CCCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR-3UTR GCA 90 bp CATGGCTTGAATTCAGCCCCTGAGGAAACCGGTTGGAATCAGGGATTCCAGCAGCCTGGCGGCTGGGGGTaGTGGCTGGAGGAGACGTTT +
Preference number: 2 (lower is better)
Translates to: HGLNSAPEETGWNQGFQQPGGWG*WLEETF
Trigger: AAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGG...CTGCTGGAATCCCTGATTCCAACCGGTTTCCTCAGGGGCTGAATTCAAGCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR CCA 72 bp CAGAGGCTTCTGAACCTGGCGGCTGGGGGTGCTGGCTaGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGC +
Preference number: 3 (lower is better)
Translates to: QRLLNLAAGGAG*RRRLKQSPERS
Trigger: GCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTTCAGAAGCCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
3UTR CCA 72 bp GCACATGGCTTGAATTCAGCCCCTGAGGAAACCGGTTaGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTG +
Preference number: 3 (lower is better)
Translates to: AHGLNSAPEETG*NQGFQQRLLNL
Trigger: CAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTTTCCTCAGGGGCTGAATTCAAGCCATGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
CDS-3UTR TCA 90 bp AAAGCTGGCTGGAGGGCAAGGAGCTCAGCTCTGAAGGCCAGGAGTAGGAAGGGCGGTCTCCTGGCACTGTaGGGGGCCACAGCTGACGGC +
Preference number: 4 (lower is better)
Translates to: KAGWRARSSALKARSRKGGLLAL*GATADG
Trigger: GCCGTCAGCTGTGGCCCCTCACAGTGCCAGGAGACC...GCCCTTCCTACTCCTGGCCTTCAGAGCTGAGCTCCTTGCCCTCCAGCCAGCTTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR GCA 90 bp GCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCAGGACCCGGGCCACCTaGAGGGGGCCTAAGCTTTCT +
Preference number: 4 (lower is better)
Translates to: AAGGAGWRRRLKQSPERSRTRAT*RGPKLS
Trigger: AGAAAGCTTAGGCCCCCTGCAGGTGGCCCGGGTCCT...GCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR GCA 90 bp CCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGAGGACCCGGGCCACCTaGAGGGGGCCTAAGCTTTCT +
Preference number: 4 (lower is better)
Translates to: PGGWGCWLEETFETKSRERTRAT*RGPKLS
Trigger: AGAAAGCTTAGGCCCCCTGCAGGTGGCCCGGGTCCT...CTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR TCA 90 bp TGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCCCATGGAGTGTGGTCTCCTGGCACTGTaGGGGGCCACAGCTGACGGC +
Preference number: 4 (lower is better)
Translates to: CWLEETFETKSREEPMECGLLAL*GATADG
Trigger: GCCGTCAGCTGTGGCCCCTCACAGTGCCAGGAGACC...ACACTCCATGGGCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR TCA 90 bp AACCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGCCCTCCAGTGTCACCTaGGAGGCGAATGTACCCTGC +
Preference number: 4 (lower is better)
Translates to: NLAAGGAGWRRRLKQSPEPSSVT*EANVPC
Trigger: GCAGGGTACATTCGCCTCTCAGGTGACACTGGAGGG...CTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203633.3
CDS-3UTR GCA 90 bp GCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCGAGGCGAATGTACCCTaGGGCCAGTCCAGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: AAGGAGWRRRLKQSPERSEANVP*GQSRSP
Trigger: TGGACTTCTGGACTGGCCGCAGGGTACATTCGCCTC...GCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203633.3
3UTR CAA 72 bp AACCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTaGAAACAAAGTCCCGAGAGGAGCCCATGGAGTGTG +
Preference number: 4 (lower is better)
Translates to: NLAAGGAGWRRR*KQSPERSPWSV
Trigger: CACACTCCATGGGCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR TCA 90 bp AACCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGGCTTCACACCATCAGTaGCCACTCCAGACTTGTCCG +
Preference number: 4 (lower is better)
Translates to: NLAAGGAGWRRRLKQSPEASHHQ*PLQTCP
Trigger: CGGACAAGTCTGGAGTGGTCACTGATGGTGTGAAGC...CTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGGTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR GCA 90 bp GGAAACCGGTTGGAATCAGGGATTCCAGCAGAGGCTTCTGAACCTGGCGGCTGGGGTTGCTTAGCTTCCTaGGGCCAGTCCAGAAGTCCA +
Preference number: 4 (lower is better)
Translates to: GNRLESGIPAEASEPGGWGCLAS*GQSRSP
Trigger: TGGACTTCTGGACTGGCCGCAGGAAGCTAAGCAACC...CCAGCCGCCAGGTTCAGAAGCCTCTGCTGGAATCCCTGATTCCAACCGGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
CDS-3UTR TCA 90 bp TTTGAAACAAAGTCCCGAGAGGAGCCCATGGAGTGTGAGGAGGAGGCAGAGGGTGCTTCACACCATCAGTaGCCACTCCAGACTTGTCCG +
Preference number: 4 (lower is better)
Translates to: FETKSREEPMECEEEAEGASHHQ*PLQTCP
Trigger: CGGACAAGTCTGGAGTGGTCACTGATGGTGTGAAGC...ACCCTCTGCCTCCTCCTCACACTCCATGGGCTCCTCTCGGGACTTTGTTTCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR CCA 90 bp GCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCCAAGTCCAGCAGGAATaGTTGCTTAGCTTCCATGAT +
Preference number: 4 (lower is better)
Translates to: AAGGAGWRRRLKQSPERSQVQQE*LLSFHD
Trigger: ATCATGGAAGCTAAGCAACCATTCCTGCTGGACTTG...GCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000203633.3
CDS-3UTR TCA 90 bp TGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCCCATGGAGTGTAGTCCAGCTGTCATCTaGCCTGTCTGGTTACAGTCA +
Preference number: 4 (lower is better)
Translates to: CWLEETFETKSREEPMECSPAVI*PVWLQS
Trigger: TGACTGTAACCAGACAGGTCAGATGACAGCTGGACT...ACACTCCATGGGCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR CCA 90 bp ATAATCCAGGCACATGGCTTGAATTCAGCCCCTGAGGAAACCGGTTGGAATCAGCAAGTCCAGCAGGAATaGTTGCTTAGCTTCCTGCGG +
Preference number: 4 (lower is better)
Translates to: IIQAHGLNSAPEETGWNQQVQQE*LLSFLR
Trigger: CCGCAGGAAGCTAAGCAACCATTCCTGCTGGACTTG...CTGATTCCAACCGGTTTCCTCAGGGGCTGAATTCAAGCCATGTGCCTGGATTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
CDS GCA 90 bp GGGGGCCTAAGCTTTCTGCCTGTGCCCCTGGTATCTCCACGTGGATaGCTCTGTCTGCACCCATGGCCAGAGCAGTTCGGATGGTCTCCT +
Preference number: 5 (lower is better)
Translates to: GGLSFLPVPLVSPRG*LCLHPWPEQFGWSP
Trigger: AGGAGACCATCCGAACTGCTCTGGCCATGGGTGCAGACAGAGGCATCCACGTGGAGATACCAGGGGCACAGGCAGAAAGCTTAGGCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR CAA 90 bp CCTGGCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGACAGAGATCCACAGCTaGCATTGTCCCAGGTCTGAC +
Preference number: 5 (lower is better)
Translates to: PGGWGCWLEETFETKSRETEIHS*HCPRSD
Trigger: GTCAGACCTGGGACAATGCAAGCTGTGGATCTCTGT...CTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR CAA 90 bp GCGGCTGGGGGTGCTGGCTGGAGGAGACGTTTGAAACAAAGTCCCGAGAGGAGCACAGAGATCCACAGCTaGCATTGTCCCAGGTCTGAC +
Preference number: 5 (lower is better)
Translates to: AAGGAGWRRRLKQSPERSTEIHS*HCPRSD
Trigger: GTCAGACCTGGGACAATGCAAGCTGTGGATCTCTGT...GCTCCTCTCGGGACTTTGTTTCAAACGTCTCCTCCAGCCAGCACCCCCAGCCGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS TCA 90 bp TCAATTTCCCGTTCCACTTTTACCTTGTCCCCCTCCAGTGTCACCTaGGAGGCGAATGTACCCTGCGGCCAGTCCAGAAGTCCAGCTGTC +
Preference number: 5 (lower is better)
Translates to: SISRSTFTLSPSSVT*EANVPCGQSRSPAV
Trigger: GACAGCTGGACTTCTGGACTGGCCGCAGGGTACATTCGCCTCTCAGGTGACACTGGAGGGGGACAAGGTAAAAGTGGAACGGGAAATTGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000203633.3
CDS GCA 90 bp CGCACAGCCTCTTCCACTGCAATCTCACAGAAGGGGTTCATGGAGTaGTTCACACCATCAGTGACCACTCCAGACTTGTCCGGCTTTACC +
Preference number: 5 (lower is better)
Translates to: RTASSTAISQKGFME*FTPSVTTPDLSGFT
Trigger: GGTAAAGCCGGACAAGTCTGGAGTGGTCACTGATGGTGTGAAGCACTCCATGAACCCCTTCTGTGAGATTGCAGTGGAAGAGGCTGTGCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR CAA 90 bp ATAATCCAGGCACATGGCTTGAATTCAGCCCCTGAGGAAACCGGTTGGAATCAGGTCCAGCAGGAATGGTaGCTTAGCTTCCTGCGGCCA +
Preference number: 5 (lower is better)
Translates to: IIQAHGLNSAPEETGWNQVQQEW*LSFLRP
Trigger: TGGCCGCAGGAAGCTAAGCAACCATTCCTGCTGGAC...CTGATTCCAACCGGTTTCCTCAGGGGCTGAATTCAAGCCATGTGCCTGGATTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
CDS TCA 90 bp CTGCAATCTCACAGAAGGGGTTCATGGAGTGCTTCACACCATCAGTaGCCACTCCAGACTTGTCCGGCTTTACCCGAATCTTCACAGCGA +
Preference number: 5 (lower is better)
Translates to: LQSHRRGSWSASHHQ*PLQTCPALPESSQR
Trigger: TCGCTGTGAAGATTCGGGTAAAGCCGGACAAGTCTGGAGTGGTCACTGATGGTGTGAAGCACTCCATGAACCCCTTCTGTGAGATTGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS-3UTR CAA 90 bp TTTGAAACAAAGTCCCGAGAGGAGCCCATGGAGTGTGAGGAGGAGGCAGAGGGTGTCCAGCAGGAATGGTaGCTTAGCTTCCATGATGTT +
Preference number: 5 (lower is better)
Translates to: FETKSREEPMECEEEAEGVQQEW*LSFHDV
Trigger: AACATCATGGAAGCTAAGCAACCATTCCTGCTGGAC...ACCCTCTGCCTCCTCCTCACACTCCATGGGCTCCTCTCGGGACTTTGTTTCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203633.3
CDS GCA 72 bp CATTGTCCCAGGTCTGACAAGTCCAGCAGGAATGGTTaGTTAGCTTCCTGCGGCCAGTCCAGAAGTCCAGCT +
Preference number: 6 (lower is better)
Translates to: HCPRSDKSSRNG*LASCGQSRSPA
Trigger: AGCTGGACTTCTGGACTGGCCGCAGGAAGCTAAGCAACCATTCCTGCTGGACTTGTCAGACCTGGGACAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
CDS CAA 90 bp AAGGGGTTCATGGAGTGCTTCACACCATCAGTGACCACTCCAGACTaGTCCGGCTTTACCCGAATCTTCACAGCGAAGTCGATGACCCTC +
Preference number: 6 (lower is better)
Translates to: KGFMECFTPSVTTPD*SGFTRIFTAKSMTL
Trigger: GAGGGTCATCGACTTCGCTGTGAAGATTCGGGTAAAGCCGGACAAGTCTGGAGTGGTCACTGATGGTGTGAAGCACTCCATGAACCCCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS TCA 72 bp CTACACAGAGATCCACAGCTTGCATTGTCCCAGGTCTaGCAAGTCCAGCAGGAATGGTTGCTTAGCTTCCTG +
Preference number: 6 (lower is better)
Translates to: LHRDPQLALSQV*QVQQEWLLSFL
Trigger: CAGGAAGCTAAGCAACCATTCCTGCTGGACTTGTCAGACCTGGGACAATGCAAGCTGTGGATCTCTGTGTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000204680.2
CDS GCA 72 bp TCTTCCACTGCAATCTCACAGAAGGGGTTCATGGAGTaGTTCACACCATCAGTGACCACTCCAGACTTGTCC +
Preference number: 6 (lower is better)
Translates to: SSTAISQKGFME*FTPSVTTPDLS
Trigger: GGACAAGTCTGGAGTGGTCACTGATGGTGTGAAGCACTCCATGAACCCCTTCTGTGAGATTGCAGTGGAAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000203633.3
ENSMUST00000204680.2
CDS TCA 72 bp CTACACAGAGATCCACAGCTTGCATTGTCCCAGGTCTaGCAAGTCCAGCAGGAATGGTTGCTTAGCTTCCAT +
Preference number: 6 (lower is better)
Translates to: LHRDPQLALSQV*QVQQEWLLSFH
Trigger: ATGGAAGCTAAGCAACCATTCCTGCTGGACTTGTCAGACCTGGGACAATGCAAGCTGTGGATCTCTGTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000203633.3