Pregenerated sensors for ETFA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032314Ensembl transcript IDs: ENSMUST00000034866.9
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | GGTGCTAGGGAATCATTTGCATGCTCAGCTATTACCAAGGTACTCTaGAAACGGAGCAATGAGGCCGCCCGCCGGAGCTGCCCAGGCGCC | + |
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Preference number: 5 (lower is better) Translates to: GARESFACSAITKVL*KRSNEAARRSCPGA Trigger: GGCGCCTGGGCAGCTCCGGCGGGCGGCCTCATTGCTCCGTTTTCAGAGTACCTTGGTAATAGCTGAGCATGCAAATGATTCCCTAGCACC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 90 bp | GTTCTGGAGCTACTATTTTTCCTGTCTGACCAACTTGCATGTCATTaGGAACAAAGCCAGCATCAACAGCAGCTCGGGAAGCACCAACTG | + |
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Preference number: 5 (lower is better) Translates to: VLELLFFLSDQLACH*EQSQHQQQLGKHQL Trigger: CAGTTGGTGCTTCCCGAGCTGCTGTTGATGCTGGCTTTGTTCCCAATGACATGCAAGTTGGTCAGACAGGAAAAATAGTAGCTCCAGAAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS TCA 90 bp | AATGGTGTGAGTTCCTCTGGAAGAAGGCCTTTGTATGCATCATGCTaGGCCACCAGAACCTTTGCTACGCCAGCTACTTTACATAGATCC | + |
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Preference number: 5 (lower is better) Translates to: NGVSSSGRRPLYASC*ATRTFATPATLHRS Trigger: GGATCTATGTAAAGTAGCTGGCGTAGCAAAGGTTCTGGTGGCTCAGCATGATGCATACAAAGGCCTTCTTCCAGAGGAACTCACACCATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 90 bp | ACTTTGGCACCAGTTAGTTCTGGTCGGTCACTTTTTGTCAATTTCTaGTCAAGCCACTCTGATATTCCCACTGATGAAGAACTTGGTGCC | + |
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Preference number: 5 (lower is better) Translates to: TLAPVSSGRSLFVNF*SSHSDIPTDEELGA Trigger: GGCACCAAGTTCTTCATCAGTGGGAATATCAGAGTGGCTTGACCAGAAATTGACAAAAAGTGACCGACCAGAACTAACTGGTGCCAAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 90 bp | ATCTGCAACTATTCCATAATCTGCCACCTGGAAAATTGGAGCTTCTaGATCTTTGTTAATAGCCACGATTGTCTTGCTGTCCTTCATCCC | + |
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Preference number: 5 (lower is better) Translates to: ICNYSIICHLENWSF*IFVNSHDCLAVLHP Trigger: GGGATGAAGGACAGCAAGACAATCGTGGCTATTAACAAAGATCCAGAAGCTCCAATTTTCCAGGTGGCAGATTATGGAATAGTTGCAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS TCA 90 bp | ACACAACGCATTTCCTGCATAGATAGTTCTCACAAATGTGTCAGGTaGCTTGATCTCAATGATGTCAGAAACTGGAGCAACATTAAGTTT | + |
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Preference number: 5 (lower is better) Translates to: TQRISCIDSSHKCVR*LDLNDVRNWSNIKF Trigger: AAACTTAATGTTGCTCCAGTTTCTGACATCATTGAGATCAAGTCACCTGACACATTTGTGAGAACTATCTATGCAGGAAATGCGTTGTGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS TCA 72 bp | GAATCATTTGCATGCTCAGCTATTACCAAGGTACTCTaGAAACGGAGCAATGAGGCCGCCCGCCGGAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: ESFACSAITKVL*KRSNEAARRSC Trigger: GCAGCTCCGGCGGGCGGCCTCATTGCTCCGTTTTCAGAGTACCTTGGTAATAGCTGAGCATGCAAATGATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 72 bp | CCACTCTTCAAACCCCGACCACCAGATACCACCACTTaGGCACCAGTTAGTTCTGGTCGGTCACTTTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: PLFKPRPPDTTT*APVSSGRSLFV Trigger: GACAAAAAGTGACCGACCAGAACTAACTGGTGCCAAAGTGGTGGTATCTGGTGGTCGGGGTTTGAAGAGTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 72 bp | CACTCTTCAAACCCCGACCACCAGATACCACCACTTTaGCACCAGTTAGTTCTGGTCGGTCACTTTTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: HSSNPDHQIPPL*HQLVLVGHFLS Trigger: TGACAAAAAGTGACCGACCAGAACTAACTGGTGCCAAAGTGGTGGTATCTGGTGGTCGGGGTTTGAAGAGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 90 bp | CTGGAAGAAGGCCTTTGTATGCATCATGCTGAGCCACCAGAACCTTaGCTACGCCAGCTACTTTACATAGATCCTGTACCACCTTGTCAC | + |
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Preference number: 6 (lower is better) Translates to: LEEGLCMHHAEPPEP*LRQLLYIDPVPPCH Trigger: GTGACAAGGTGGTACAGGATCTATGTAAAGTAGCTGGCGTAGCAAAGGTTCTGGTGGCTCAGCATGATGCATACAAAGGCCTTCTTCCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS TCA 72 bp | AGTTCCTCTGGAAGAAGGCCTTTGTATGCATCATGCTaGGCCACCAGAACCTTTGCTACGCCAGCTACTTTA | + |
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Preference number: 6 (lower is better) Translates to: SSSGRRPLYASC*ATRTFATPATL Trigger: TAAAGTAGCTGGCGTAGCAAAGGTTCTGGTGGCTCAGCATGATGCATACAAAGGCCTTCTTCCAGAGGAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 72 bp | CTACTATTTTTCCTGTCTGACCAACTTGCATGTCATTaGGAACAAAGCCAGCATCAACAGCAGCTCGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: LLFFLSDQLACH*EQSQHQQQLGK Trigger: CTTCCCGAGCTGCTGTTGATGCTGGCTTTGTTCCCAATGACATGCAAGTTGGTCAGACAGGAAAAATAGTAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 90 bp | GGTGACTTGATCTCAATGATGTCAGAAACTGGAGCAACATTAAGTTaGGCAGCTACTCTGGGCAGAAGGTTCTTTCCAAAAGCAGACGCT | + |
|
Preference number: 6 (lower is better) Translates to: GDLISMMSETGATLS*AATLGRRFFPKADA Trigger: AGCGTCTGCTTTTGGAAAGAACCTTCTGCCCAGAGTAGCTGCCAAACTTAATGTTGCTCCAGTTTCTGACATCATTGAGATCAAGTCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 90 bp | CAGATACCACCACTTTGGCACCAGTTAGTTCTGGTCGGTCACTTTTaGTCAATTTCTGGTCAAGCCACTCTGATATTCCCACTGATGAAG | + |
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Preference number: 6 (lower is better) Translates to: QIPPLWHQLVLVGHF*SISGQATLIFPLMK Trigger: CTTCATCAGTGGGAATATCAGAGTGGCTTGACCAGAAATTGACAAAAAGTGACCGACCAGAACTAACTGGTGCCAAAGTGGTGGTATCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 72 bp | CTACTTTACATAGATCCTGTACCACCTTGTCACACTTaGTTCCAGCTACTAAGCAGGACACTTCACCTCCAA | + |
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Preference number: 6 (lower is better) Translates to: LLYIDPVPPCHT*FQLLSRTLHLQ Trigger: TTGGAGGTGAAGTGTCCTGCTTAGTAGCTGGAACCAAGTGTGACAAGGTGGTACAGGATCTATGTAAAGTAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 72 bp | CCACTTTGGCACCAGTTAGTTCTGGTCGGTCACTTTTaGTCAATTTCTGGTCAAGCCACTCTGATATTCCCA | + |
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Preference number: 6 (lower is better) Translates to: PLWHQLVLVGHF*SISGQATLIFP Trigger: TGGGAATATCAGAGTGGCTTGACCAGAAATTGACAAAAAGTGACCGACCAGAACTAACTGGTGCCAAAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 90 bp | AGCAATATAAAGTTCTGGAGCTACTATTTTTCCTGTCTGACCAACTaGCATGTCATTGGGAACAAAGCCAGCATCAACAGCAGCTCGGGA | + |
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Preference number: 6 (lower is better) Translates to: SNIKFWSYYFSCLTN*HVIGNKASINSSSG Trigger: TCCCGAGCTGCTGTTGATGCTGGCTTTGTTCCCAATGACATGCAAGTTGGTCAGACAGGAAAAATAGTAGCTCCAGAACTTTATATTGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 72 bp | AAGTTCTGGAGCTACTATTTTTCCTGTCTGACCAACTaGCATGTCATTGGGAACAAAGCCAGCATCAACAGC | + |
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Preference number: 6 (lower is better) Translates to: KFWSYYFSCLTN*HVIGNKASINS Trigger: GCTGTTGATGCTGGCTTTGTTCCCAATGACATGCAAGTTGGTCAGACAGGAAAAATAGTAGCTCCAGAACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 72 bp | TGTGTAACTGAACTGCTTCTGAGTTTCCAAAATCAATaGTGTGAGTTCCTCTGGAAGAAGGCCTTTGTATGC | + |
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Preference number: 6 (lower is better) Translates to: CVTELLLSFQNQ*CEFLWKKAFVC Trigger: GCATACAAAGGCCTTCTTCCAGAGGAACTCACACCATTGATTTTGGAAACTCAGAAGCAGTTCAGTTACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 72 bp | CCAGTTAGTTCTGGTCGGTCACTTTTTGTCAATTTCTaGTCAAGCCACTCTGATATTCCCACTGATGAAGAA | + |
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Preference number: 6 (lower is better) Translates to: PVSSGRSLFVNF*SSHSDIPTDEE Trigger: TTCTTCATCAGTGGGAATATCAGAGTGGCTTGACCAGAAATTGACAAAAAGTGACCGACCAGAACTAACTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CCA 72 bp | TATTCCATAATCTGCCACCTGGAAAATTGGAGCTTCTaGATCTTTGTTAATAGCCACGATTGTCTTGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: YSIICHLENWSF*IFVNSHDCLAV Trigger: GACAGCAAGACAATCGTGGCTATTAACAAAGATCCAGAAGCTCCAATTTTCCAGGTGGCAGATTATGGAATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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| CDS CAA 72 bp | ATCTCAATGATGTCAGAAACTGGAGCAACATTAAGTTaGGCAGCTACTCTGGGCAGAAGGTTCTTTCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: ISMMSETGATLS*AATLGRRFFPK Trigger: TTTTGGAAAGAACCTTCTGCCCAGAGTAGCTGCCAAACTTAATGTTGCTCCAGTTTCTGACATCATTGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034866.9 |
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