RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ESYT1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025366

Ensembl transcript IDs: ENSMUST00000026427.8, ENSMUST00000220429.2

Found 214 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGCTGTaGAGGCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGA +
Preference number: 1 (lower is better)
Translates to: AQKAKGHRLSPGAAL*RLITLGQEARREDG
Trigger: TCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR TCA 90 bp CAACGGGAGCCTCAGAGGGACTGTCACCATGTGTTAGGCGATGCCTaGCCTCTAGGACCGGGGAGGCAGGGTGAGTGGGTCCCCCTAAGG +
Preference number: 1 (lower is better)
Translates to: QREPQRDCHHVLGDA*PLGPGRQGEWVPLR
Trigger: CCTTAGGGGGACCCACTCACCCTGCCTCCCCGGTCCTAGAGGTCAGGCATCGCCTAACACATGGTGACAGTCCCTCTGAGGCTCCCGTTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 90 bp CCATGTGTTAGGCGATGCCTGACCTCTAGGACCGGGGAGGCAGGGTaGGTGGGTCCCCCTAAGGCCTCAGGTTCGTCATTGAGCGAGGAG +
Preference number: 1 (lower is better)
Translates to: PCVRRCLTSRTGEAG*VGPPKASGSSLSEE
Trigger: CTCCTCGCTCAATGACGAACCTGAGGCCTTAGGGGGACCCACTCACCCTGCCTCCCCGGTCCTAGAGGTCAGGCATCGCCTAACACATGG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR GCA 90 bp GGCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTaGCAGGCTGTCAGCCCTCAGCTCCTAGGAACCGCCCTTATCTCT +
Preference number: 1 (lower is better)
Translates to: GSSHWGKRRGEKTEQ*QAVSPQLLGTALIS
Trigger: AGAGATAAGGGCGGTTCCTAGGAGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR CCA 90 bp ATCAGCTTTTGTTCGTCGCTGTGGTACCACACTGTCAGCTTCACCTaGCCCAGGGGCCCAACGGGAGCCTCAGAGGGACTGTCACCATGT +
Preference number: 1 (lower is better)
Translates to: ISFCSSLWYHTVSFT*PRGPTGASEGLSPC
Trigger: ACATGGTGACAGTCCCTCTGAGGCTCCCGTTGGGCCCCTGGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACGAACAAAAGCTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 90 bp GGTCTTCCTCTTGGTGCTTCGGTTCTTGTCTGGGAGCAGCAACACTaGCACATAGGGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGC +
Preference number: 1 (lower is better)
Translates to: GLPLGASVLVWEQQH*HIGVWEITSILSKG
Trigger: GCCCTTCGACAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAGTGTTGCTGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 90 bp CCCAGCTGCTGCTCATCTTGTACAGGCAGTCGGAGAGACTCAGTCTaGCCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGA +
Preference number: 1 (lower is better)
Translates to: PSCCSSCTGSRRDSV*PSHPSVYSPLWLGR
Trigger: TCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGCAGCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR TCA 90 bp GGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGCCCGGCAGCTGTaGATAATGCTGATCAGCTTTTGTTCGTCGCTGTGGTACCACACT +
Preference number: 1 (lower is better)
Translates to: GSGRSRPFCRRARQL*IMLISFCSSLWYHT
Trigger: AGTGTGGTACCACAGCGACGAACAAAAGCTGATCAGCATTATTCACAGCTGCCGGGCCCTTCGACAAAATGGACGTGATCTCCCAGACCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR CCA 90 bp ACTCAGTCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTaGGAAGATGACCATGCAGGCATAGAAAACCTAACACACCATTCA +
Preference number: 1 (lower is better)
Translates to: TQSDLHTPLFILPYG*EDDHAGIENLTHHS
Trigger: TGAATGGTGTGTTAGGTTTTCTATGCCTGCATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGACTGAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR-3UTR TCA 90 bp TTCGTCGCTGTGGTACCACACTGTCAGCTTCACCTGGCCCAGGGGCCCAACGGGACCGGGGAGGCAGGGTaGGTGGGTCCCCCTAAGGCC +
Preference number: 2 (lower is better)
Translates to: FVAVVPHCQLHLAQGPNGTGEAG*VGPPKA
Trigger: GGCCTTAGGGGGACCCACTCACCCTGCCTCCCCGGT...CCCGTTGGGCCCCTGGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACGAA
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR TCA 90 bp GAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTCCTAGGCCAGGCACAGGTGCGTaGGGCCCTGAGGAGTGGGAA +
Preference number: 2 (lower is better)
Translates to: EARREDGAVPGCQPSAPRPGTGA*GPEEWE
Trigger: TTCCCACTCCTCAGGGCCTCACGCACCTGTGCCTGG...CCTAGGAGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR GCA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGGAGAAGACGGAGCAGTaGCAGGCTGTCAGCCCTCAG +
Preference number: 2 (lower is better)
Translates to: QRPIYGPRRQKGTGSALEEKTEQ*QAVSPQ
Trigger: CTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTC...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR-3UTR GCA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATGTGCCAGCATGGCATaGAAGTTCATGAAGCACTGT +
Preference number: 2 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSCASMA*KFMKHC
Trigger: ACAGTGCTTCATGAACTTGCATGCCATGCTGGCACA...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR-3UTR GCA 90 bp ACACTGACACATAGGGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGCCCGGCGAGAAGACGGAGCAGTaGCAGGCTGTCAGCCCTCAG +
Preference number: 2 (lower is better)
Translates to: TLTHRGLGDHVHFVEGPGEKTEQ*QAVSPQ
Trigger: CTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTC...GCCGGGCCCTTCGACAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR CCA 90 bp GGGTCTTCCTCTTGGTGCTTCGGTTCTTGTCTGGGAGCAGCAACACTGACACATCCTGGAGCCGCGCTGTaGAGGCTCATCACACTGGGG +
Preference number: 2 (lower is better)
Translates to: GSSSWCFGSCLGAATLTHPGAAL*RLITLG
Trigger: CCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGG...ATGTGTCAGTGTTGCTGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR TCA 90 bp AGACTCAGTCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGCCAGGCACAGGTGCGTaGGGCCCTGAGGAGTGGGAA +
Preference number: 2 (lower is better)
Translates to: RLSLTFTPLCLFSLMAGKPGTGA*GPEEWE
Trigger: TTCCCACTCCTCAGGGCCTCACGCACCTGTGCCTGG...CTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGACTGAGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR-3UTR CCA 90 bp ACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGTCCAAAAGCTGTATTTaGCATGAGCGAATGCCACTG +
Preference number: 2 (lower is better)
Translates to: THIRAQKAKGHRLSPGAASKSCI*HERMPL
Trigger: CAGTGGCATTCGCTCATGCCAAATACAGCTTTTGGA...CGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR-3UTR CCA 90 bp TCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCTCCAAAAGCTGTATTTaGCATGAGCGAATGCCACTG +
Preference number: 2 (lower is better)
Translates to: SHWGKRRGEKTEQCQAVSSKSCI*HERMPL
Trigger: CAGTGGCATTCGCTCATGCCAAATACAGCTTTTGGA...GCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR-3UTR TCA 90 bp GTCAGCCCTCAGCTCCTAGGAACCGCCCTTATCTCTGTCATCCATCAGGTCATATCCACTCCCGAGTGCTaGGATACCAGGATCCCAAGC +
Preference number: 2 (lower is better)
Translates to: VSPQLLGTALISVIHQVISTPEC*DTRIPS
Trigger: GCTTGGGATCCTGGTATCTCAGCACTCGGGAGTGGA...TATGACCTGATGGATGACAGAGATAAGGGCGGTTCCTAGGAGCTGAGGGCTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR CAA 90 bp ATTTTGTCGAAGGGCCCGGCAGCTGTGAATAATGCTGATCAGCTTTaGTTCGTCGCTGTGGTACCACACTGTCAGCTTCACCTGGCCCAG +
Preference number: 2 (lower is better)
Translates to: ILSKGPAAVNNADQL*FVAVVPHCQLHLAQ
Trigger: CTGGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACGAACAAAAGCTGATCAGCATTATTCACAGCTGCCGGGCCCTTCGACAAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR CCA 90 bp ATAAAGGCCGTGCAGAAAGGAGTAACATGTGATCCTCTTTGGTCAAGCAAAGACCCTGGAGCCGCGCTGTaGAGGCTCATCACACTGGGG +
Preference number: 2 (lower is better)
Translates to: IKAVQKGVTCDPLWSSKDPGAAL*RLITLG
Trigger: CCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGG...GTCTTTGCTTGACCAAAGAGGATCACATGTTACTCCTTTCTGCACGGCCTTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR-3UTR TCA 90 bp CCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGCACGCTCTCGTGACATaGAGGAGGAGTTTGACTTCA +
Preference number: 2 (lower is better)
Translates to: PLWSSKDPYTGPEGKRAQHALVT*RRSLTS
Trigger: TGAAGTCAAACTCCTCCTTCATGTCACGAGAGCGTG...CTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR GCA 72 bp CACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTaGCAGGCTGTCAGCCCTCAGCTCCTAGGAACCGCC +
Preference number: 3 (lower is better)
Translates to: HWGKRRGEKTEQ*QAVSPQLLGTA
Trigger: GGCGGTTCCTAGGAGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR CCA 72 bp TCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTaGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGC +
Preference number: 3 (lower is better)
Translates to: SALEPRCGGSSH*GKRRGEKTEQC
Trigger: GCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR CCA 72 bp GCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGCTGTaGAGGCTCATCACACTGGGGCAAGAGGCGAGGCGA +
Preference number: 3 (lower is better)
Translates to: AKGHRLSPGAAL*RLITLGQEARR
Trigger: TCGCCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
3UTR GCA 72 bp GCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTaGTCATCTTGTACAGGCAGTCGGAGAGACTCAGTC +
Preference number: 3 (lower is better)
Translates to: AGGEELDTGPSC*SSCTGSRRDSV
Trigger: GACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR TCA 72 bp AGGCGATGCCTGACCTCTAGGACCGGGGAGGCAGGGTaGGTGGGTCCCCCTAAGGCCTCAGGTTCGTCATTG +
Preference number: 3 (lower is better)
Translates to: RRCLTSRTGEAG*VGPPKASGSSL
Trigger: CAATGACGAACCTGAGGCCTTAGGGGGACCCACTCACCCTGCCTCCCCGGTCCTAGAGGTCAGGCATCGCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR GCA 72 bp AAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTaGTGCTCATCTTGTACAGGCAGTCGGAGAGACTCA +
Preference number: 3 (lower is better)
Translates to: KAGGEELDTGPS*CSSCTGSRRDS
Trigger: TGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR CCA 72 bp TGTTCGTCGCTGTGGTACCACACTGTCAGCTTCACCTaGCCCAGGGGCCCAACGGGAGCCTCAGAGGGACTG +
Preference number: 3 (lower is better)
Translates to: CSSLWYHTVSFT*PRGPTGASEGL
Trigger: CAGTCCCTCTGAGGCTCCCGTTGGGCCCCTGGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACGAACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 72 bp CCTCAGAGGGACTGTCACCATGTGTTAGGCGATGCCTaGCCTCTAGGACCGGGGAGGCAGGGTGAGTGGGTC +
Preference number: 3 (lower is better)
Translates to: PQRDCHHVLGDA*PLGPGRQGEWV
Trigger: GACCCACTCACCCTGCCTCCCCGGTCCTAGAGGTCAGGCATCGCCTAACACATGGTGACAGTCCCTCTGAGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR CCA 72 bp CTGTCATCCATCAGGTCATACCACTGGGCTGCACCCTaGGAAAGGTCTATCTCTGCTAGATCCAGCTGCACC +
Preference number: 3 (lower is better)
Translates to: LSSIRSYHWAAP*ERSISARSSCT
Trigger: GGTGCAGCTGGATCTAGCAGAGATAGACCTTTCCCAGGGTGCAGCCCAGTGGTATGACCTGATGGATGACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 72 bp GCTGCACCTTCCCCAGAAGCTCACGCTCTCGTGACATaGAGGAGGAGTTTGACTTCACAGAGACATCGAGCT +
Preference number: 3 (lower is better)
Translates to: AAPSPEAHALVT*RRSLTSQRHRA
Trigger: AGCTCGATGTCTCTGTGAAGTCAAACTCCTCCTTCATGTCACGAGAGCGTGAGCTTCTGGGGAAGGTGCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 72 bp CTTGGTGCTTCGGTTCTTGTCTGGGAGCAGCAACACTaGCACATAGGGGTCTGGGAGATCACGTCCATTTTG +
Preference number: 3 (lower is better)
Translates to: LGASVLVWEQQH*HIGVWEITSIL
Trigger: CAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAGTGTTGCTGCTCCCAGACAAGAACCGAAGCACCAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR CAA 90 bp GGGTCTTCCTCTTGGTGCTTCGGTTCTTGTCTGGGAGCAGCAACACTGACACATAATGCTGATCAGCTTTaGTTCGTCGCTGTGGTACCA +
Preference number: 3 (lower is better)
Translates to: GSSSWCFGSCLGAATLTHNADQL*FVAVVP
Trigger: TGGTACCACAGCGACGAACAAAAGCTGATCAGCATT...ATGTGTCAGTGTTGCTGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR-3UTR CAA 90 bp ATCCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACCACTCAAACCGCTCATaGAACTCAGGATTGAGGGTC +
Preference number: 3 (lower is better)
Translates to: ILFGQAKTHIRAQKAKGHHSNRS*NSGLRV
Trigger: GACCCTCAATCCTGAGTTCAATGAGCGGTTTGAGTG...GTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 72 bp AGATCACGTCCATTTTGTCGAAGGGCCCGGCAGCTGTaGATAATGCTGATCAGCTTTTGTTCGTCGCTGTGG +
Preference number: 3 (lower is better)
Translates to: RSRPFCRRARQL*IMLISFCSSLW
Trigger: CCACAGCGACGAACAAAAGCTGATCAGCATTATTCACAGCTGCCGGGCCCTTCGACAAAATGGACGTGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR TCA 72 bp TGCTCATCTTGTACAGGCAGTCGGAGAGACTCAGTCTaGCCTTCACACCCCTCTGTTTATTCTCCCTTATGG +
Preference number: 3 (lower is better)
Translates to: CSSCTGSRRDSV*PSHPSVYSPLW
Trigger: CCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR GCA 72 bp GGTAGAGATCAGCGTGGCCCCTGTGCCAGCATGGCATaGAAGTTCATGAAGCACTGTTTTCTGTATATTTTT +
Preference number: 3 (lower is better)
Translates to: GRDQRGPCASMA*KFMKHCFLYIF
Trigger: AAAAATATACAGAAAACAGTGCTTCATGAACTTGCATGCCATGCTGGCACAGGGGCCACGCTGATCTCTACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR CCA 72 bp GACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTaGGAAGATGACCATGCAGGCATAGAAAACCTAACA +
Preference number: 3 (lower is better)
Translates to: DLHTPLFILPYG*EDDHAGIENLT
Trigger: TGTTAGGTTTTCTATGCCTGCATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCACGCTCCAGGCGCAAGTaGAGGCGCCCGGATGGGACA +
Preference number: 4 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSRSRRK*RRPDGT
Trigger: TGTCCCATCCGGGCGCCTGCACTTGCGCCTGGAGCG...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp CTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCCCGCGTGGAGTCCGTaGCAGGGGGCTGCCCTGACG +
Preference number: 4 (lower is better)
Translates to: LITLGQEARREDGAVPGCPAWSP*QGAALT
Trigger: CGTCAGGGCAGCCCCCTGCCACGGACTCCACGCGGG...ACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp GAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTTGGTGCAGGCGCCCGGATaGGACATCCTCCAGGGTCAG +
Preference number: 4 (lower is better)
Translates to: EQGGRGGAGHGAQLLLILVQAPG*DILQGQ
Trigger: CTGACCCTGGAGGATGTCCCATCCGGGCGCCTGCAC...CAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp GAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTTGCCTTCACCCCGAACCTaGAGCTCCAGGCTCTCAGCG +
Preference number: 4 (lower is better)
Translates to: EQGGRGGAGHGAQLLLILPSPRT*SSRLSA
Trigger: CGCTGAGAGCCTGGAGCTGCAGGTTCGGGGTGAAGG...CAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGTGATAGGGCCGAGGTaGGGCATCCACACTGCTGCC +
Preference number: 4 (lower is better)
Translates to: AQPWSRAVEAHHTGARGEVIGPR*GIHTAA
Trigger: GGCAGCAGTGTGGATGCCCCACCTCGGCCCTATCAC...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGGCTCTGGCCGAGAAGTaGTGCCCCGATTCCACTGCA +
Preference number: 4 (lower is better)
Translates to: LSPGAALWRLITLGQEARALAEK*CPDSTA
Trigger: TGCAGTGGAATCGGGGCATCACTTCTCGGCCAGAGC...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCACGGTCCCAGTCCTaGGCACCAGGCACAGTGGGG +
Preference number: 4 (lower is better)
Translates to: AHHTGARGEARRRSSARLSRSQS*APGTVG
Trigger: CCCCACTGTGCCTGGTGCCCAGGACTGGGACCGTGA...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCAAGGAAGGGCCACACCTaGGCCACGATCTTGTTCAGC +
Preference number: 4 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSRKGHT*ATILFS
Trigger: GCTGAACAAGATCGTGGCTCAGGTGTGGCCCTTCCT...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp TCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCGGGCTGCCAGCAGGTaGATCCGGATAATGCCCCTG +
Preference number: 4 (lower is better)
Translates to: SHWGKRRGEKTEQCQAVSRAASR*IRIMPL
Trigger: CAGGGGCATTATCCGGATTCACCTGCTGGCAGCCCG...GCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGGGGCATCCACACTGCTaGCTGTCTCTAGGCTCTCAC +
Preference number: 4 (lower is better)
Translates to: LSPGAALWRLITLGQEARGHPHC*LSLGSH
Trigger: GTGAGAGCCTAGAGACAGGCAGCAGTGTGGATGCCC...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp GAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTTGGTGGGGCATCCACACTaGTGCCTGTCTCTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: EQGGRGGAGHGAQLLLILVGHPH*CLSLGS
Trigger: AGAGCCTAGAGACAGGCAGCAGTGTGGATGCCCCAC...CAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGCGTAGGGGTCTGATTTaGCCTTCACCAGGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: LSPGAALWRLITLGQEARRRGLI*PSPGLP
Trigger: TGGGAGGCCTGGTGAAGGGCAAATCAGACCCCTACG...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGGCCTTTTCCACATCTaGGAAGCTGACCCAGGCAGG +
Preference number: 4 (lower is better)
Translates to: AQPWSRAVEAHHTGARGEGLFHI*EADPGR
Trigger: CCTGCCTGGGTCAGCTTCCCAGATGTGGAAAAGGCC...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp ACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGGAGGATGGCAGCCGATaGGGGCTCTGGCCGAGAAGT +
Preference number: 4 (lower is better)
Translates to: THIRAQKAKGHRLSPGAAEDGSR*GLWPRS
Trigger: ACTTCTCGGCCAGAGCCCCCATCGGCTGCCATCCTC...CGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp TCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCGTGATAGGGCCGAGGTaGGGCATCCACACTGCTGCC +
Preference number: 4 (lower is better)
Translates to: SHWGKRRGEKTEQCQAVSVIGPR*GIHTAA
Trigger: GGCAGCAGTGTGGATGCCCCACCTCGGCCCTATCAC...GCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp ATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTCCACTCCCGAGTGCTaGGATACCAGGATCCCAAGC +
Preference number: 4 (lower is better)
Translates to: IEQGGRGGAGHGAQLLLISTPEC*DTRIPS
Trigger: GCTTGGGATCCTGGTATCTCAGCACTCGGGAGTGGA...GATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp GAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTCCTAGGGTGGGGCATCCACACTaGTGCCTGTCTCTAGGCTCT +
Preference number: 4 (lower is better)
Translates to: EARREDGAVPGCQPSAPRVGHPH*CLSLGS
Trigger: AGAGCCTAGAGACAGGCAGCAGTGTGGATGCCCCAC...CCTAGGAGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGTGTACATCAAGCTCCTaGCTTCGAGGGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: AQPWSRAVEAHHTGARGECTSSS*LRGSCR
Trigger: CCTGCAGGACCCTCGAAGCCAGGAGCTTGATGTACA...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCACACTGGGCTGCACCCTaGGAAAGGTCTATCTCTGCT +
Preference number: 4 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSHWAAP*ERSISA
Trigger: AGCAGAGATAGACCTTTCCCAGGGTGCAGCCCAGTG...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTGGCTGCTGCCAGCTCTaGACTCTTCTGAGTCTGGAT +
Preference number: 4 (lower is better)
Translates to: GQEARREDGAVPGCQPSAGCCQL*TLLSLD
Trigger: ATCCAGACTCAGAAGAGTTCAGAGCTGGCAGCAGCC...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GCTGCTCATCTTGTACAGGCAGTCGGAGAGACTCAGTCTGACCTTCACACCCCTACCGGGGAGGCAGGGTaGGTGGGTCCCCCTAAGGCC +
Preference number: 4 (lower is better)
Translates to: AAHLVQAVGETQSDLHTPTGEAG*VGPPKA
Trigger: GGCCTTAGGGGGACCCACTCACCCTGCCTCCCCGGT...AGGGGTGTGAAGGTCAGACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp CTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCAGCTGCCTCGCTaGCCTCAGGCTCCGTTCTTT +
Preference number: 4 (lower is better)
Translates to: LITLGQEARREDGAVPGCQQLPR*PQAPFF
Trigger: AAAGAACGGAGCCTGAGGGCAGCGAGGCAGCTGCTG...ACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp GAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTTGAAGACACCATGGAGCTaGATGCCCTTGACTCCAGCT +
Preference number: 4 (lower is better)
Translates to: EQGGRGGAGHGAQLLLILKTPWS*MPLTPA
Trigger: AGCTGGAGTCAAGGGCATGCAGCTCCATGGTGTCTT...CAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTAGGGTCCTCTTCTTCTaGGGGGTCTTCCTCTTGGTG +
Preference number: 4 (lower is better)
Translates to: GQEARREDGAVPGCQPSARVLFF*GVFLLV
Trigger: CACCAAGAGGAAGACCCCGCAGAAGAAGAGGACCCT...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGCATGGTGTCAGAGAGTaGGCTAAGTCCTGGGATATC +
Preference number: 4 (lower is better)
Translates to: AQPWSRAVEAHHTGARGEHGVRE*AKSWDI
Trigger: GATATCCCAGGACTTAGCTCACTCTCTGACACCATG...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTCATTCTAGTCTCAAGTaGACTTGGCCTTGCCCGCCT +
Preference number: 4 (lower is better)
Translates to: GQEARREDGAVPGCQPSAHSSLK*TWPCPP
Trigger: AGGCGGGCAAGGCCAAGTTCACTTGAGACTAGAATG...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTTTGACGTAGGGGTCTaGTTTGCCCTTCACCAGGCC +
Preference number: 4 (lower is better)
Translates to: AHHTGARGEARRRSSARLFDVGV*FALHQA
Trigger: GGCCTGGTGAAGGGCAAATCAGACCCCTACGTCAAA...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGTCGTCATCCAGCAGCTaGCTCGCTGCCCTCAGGCTC +
Preference number: 4 (lower is better)
Translates to: QRPIYGPRRQKGTGSALESSSSS*LAALRL
Trigger: GAGCCTGAGGGCAGCGAGGCAGCTGCTGGATGACGA...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp ACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGTGGCCTTGCCCGCCTTaGAGAGGGTACCAATTATCC +
Preference number: 4 (lower is better)
Translates to: THIRAQKAKGHRLSPGAAWPCPP*RGYQLS
Trigger: GGATAATTGGTACCCTCTGCAAGGCGGGCAAGGCCA...CGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTGGCTTCGAGGGTCCTaGAGGAAAAACCGGAAAGCC +
Preference number: 4 (lower is better)
Translates to: AHHTGARGEARRRSSARLWLRGS*RKNRKA
Trigger: GGCTTTCCGGTTTTTCCTGCAGGACCCTCGAAGCCA...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp TCCTCTTCTTCTGCGGGGTCTTCCTCTTGGTGCTTCGGTTCTTGTCTGGGAGCACGCTCCAGGCGCAAGTaGAGGCGCCCGGATGGGACA +
Preference number: 4 (lower is better)
Translates to: SSSSAGSSSWCFGSCLGARSRRK*RRPDGT
Trigger: TGTCCCATCCGGGCGCCTGCACTTGCGCCTGGAGCG...TGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCCCGCAGAAGAAGAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp ATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTCTGCTAGATCCAGCTaGACCTTCCCCAGAAGCTCA +
Preference number: 4 (lower is better)
Translates to: IEQGGRGGAGHGAQLLLISARSS*TFPRSS
Trigger: TGAGCTTCTGGGGAAGGTGCAGCTGGATCTAGCAGA...GATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGTCACATACTTGTCCTTaGAACTCAGACCTCGGGCTG +
Preference number: 4 (lower is better)
Translates to: LSPGAALWRLITLGQEARSHTCP*NSDLGL
Trigger: CAGCCCGAGGTCTGAGTTCCAAGGACAAGTATGTGA...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp TCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCTGTACATCAAGCTCCTaGCTTCGAGGGTCCTGCAGG +
Preference number: 4 (lower is better)
Translates to: SHWGKRRGEKTEQCQAVSCTSSS*LRGSCR
Trigger: CCTGCAGGACCCTCGAAGCCAGGAGCTTGATGTACA...GCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGATCAGGTCATACCACTaGGCTGCACCCTGGGAAAGG +
Preference number: 4 (lower is better)
Translates to: AHHTGARGEARRRSSARLIRSYH*AAPWER
Trigger: CCTTTCCCAGGGTGCAGCCCAGTGGTATGACCTGAT...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCACATCTGGGAAGCTaGCCCAGGCAGGTAGTTCCC +
Preference number: 4 (lower is better)
Translates to: QRPIYGPRRQKGTGSALEPHLGS*PRQVVP
Trigger: GGGAACTACCTGCCTGGGTCAGCTTCCCAGATGTGG...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp AAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCTTGGGCCTGAGCTGCTaGGCTGGAACCACTGGTCCA +
Preference number: 4 (lower is better)
Translates to: KDPYTGPEGKRAQAQPWSLGLSC*AGTTGP
Trigger: TGGACCAGTGGTTCCAGCTCAGCAGCTCAGGCCCAA...GCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTCTGCCACCTTTAGTTTaGCGTAGGGGTCTGATTTGC +
Preference number: 4 (lower is better)
Translates to: GQEARREDGAVPGCQPSALPPLV*RRGLIC
Trigger: GCAAATCAGACCCCTACGTCAAACTAAAGGTGGCAG...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTCATTCCAGCGGGGATTaGGATCTTCCCGAACAACAT +
Preference number: 4 (lower is better)
Translates to: GQEARREDGAVPGCQPSAHSSGD*DLPEQH
Trigger: ATGTTGTTCGGGAAGATCTCAATCCCCGCTGGAATG...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCAACACTGACACATAGGGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGCCCTCACGGTCCCAGTCCTaGGCACCAGGCACAGTGGGG +
Preference number: 4 (lower is better)
Translates to: ATLTHRGLGDHVHFVEGPSRSQS*APGTVG
Trigger: CCCCACTGTGCCTGGTGCCCAGGACTGGGACCGTGA...GGGCCCTTCGACAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAGTGTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGCCAAGAAACGGTCTTTaGCAATTAGGTCCTGCGCTT +
Preference number: 4 (lower is better)
Translates to: AQPWSRAVEAHHTGARGEPRNGL*QLGPAL
Trigger: AAGCGCAGGACCTAATTGCCAAAGACCGTTTCTTGG...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGACAGTCTTGGTTTTATaGGAAGTCTCTCCCACGGTG +
Preference number: 4 (lower is better)
Translates to: LSPGAALWRLITLGQEARTVLVL*EVSPTV
Trigger: CACCGTGGGAGAGACTTCCCATAAAACCAAGACTGT...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp ACACTGACACATAGGGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGCCCGGCGCTCTGGCCGAGAAGTaGTGCCCCGATTCCACTGCA +
Preference number: 4 (lower is better)
Translates to: TLTHRGLGDHVHFVEGPGALAEK*CPDSTA
Trigger: TGCAGTGGAATCGGGGCATCACTTCTCGGCCAGAGC...GCCGGGCCCTTCGACAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAGTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp TTCGTCGCTGTGGTACCACACTGTCAGCTTCACCTGGCCCAGGGGCCCAACGGGATCAGGCTGTTCACCTaGAGCACCTCCTCTAACTCA +
Preference number: 4 (lower is better)
Translates to: FVAVVPHCQLHLAQGPNGIRLFT*STSSNS
Trigger: TGAGTTAGAGGAGGTGCTGCAGGTGAACAGCCTGAT...CCCGTTGGGCCCCTGGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGTCTTCCCGAACAACATaGGTCCGGAAACTTTTTCCT +
Preference number: 4 (lower is better)
Translates to: AQPWSRAVEAHHTGARGESSRTT*VRKLFP
Trigger: AGGAAAAAGTTTCCGGACCCATGTTGTTCGGGAAGA...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGTGCAGGCGCCCGGATaGGACATCCTCCAGGGTCAG +
Preference number: 4 (lower is better)
Translates to: PLWSSKDPYTGPEGKRAQVQAPG*DILQGQ
Trigger: CTGACCCTGGAGGATGTCCCATCCGGGCGCCTGCAC...CTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp AAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCTGGCCTTGCCCGCCTTaGAGAGGGTACCAATTATCC +
Preference number: 4 (lower is better)
Translates to: KDPYTGPEGKRAQAQPWSWPCPP*RGYQLS
Trigger: GGATAATTGGTACCCTCTGCAAGGCGGGCAAGGCCA...GCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp GTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCGTAGGGGTCTGATTTaGCCTTCACCAGGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: VKQRPIYGPRRQKGTGSARRGLI*PSPGLP
Trigger: TGGGAGGCCTGGTGAAGGGCAAATCAGACCCCTACG...GGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp CTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTATCAGGCTGTTCACCTaGAGCACCTCCTCTAACTCA +
Preference number: 4 (lower is better)
Translates to: LITLGQEARREDGAVPGCIRLFT*STSSNS
Trigger: TGAGTTAGAGGAGGTGCTGCAGGTGAACAGCCTGAT...ACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp TGCACCTTCCCCAGAAGCTCACGCTCTCGTGACATGAAGGAGGAGTTTGACTTCCCTTCACCCCGAACCTaGAGCTCCAGGCTCTCAGCG +
Preference number: 4 (lower is better)
Translates to: CTFPRSSRSRDMKEEFDFPSPRT*SSRLSA
Trigger: CGCTGAGAGCCTGGAGCTGCAGGTTCGGGGTGAAGG...GAAGTCAAACTCCTCCTTCATGTCACGAGAGCGTGAGCTTCTGGGGAAGGTGCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CAGCCCTCAGCTCCTAGGAACCGCCCTTATCTCTGTCATCCATCAGGTCATACCTGGTCCAGGCAGAGCTaGTCCTCCTGGAGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: QPSAPRNRPYLCHPSGHTWSRQS*SSWRSS
Trigger: TGAGCTCCTCCAGGAGGACCAGCTCTGCCTGGACCA...GGTATGACCTGATGGATGACAGAGATAAGGGCGGTTCCTAGGAGCTGAGGGCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTTTTGTTCGTCGCTGTaGTACCACACTGTCAGCTTC +
Preference number: 4 (lower is better)
Translates to: AHHTGARGEARRRSSARLFCSSL*YHTVSF
Trigger: GAAGCTGACAGTGTGGTACCACAGCGACGAACAAAA...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp AAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCATTCTAGTCTCAAGTaGACTTGGCCTTGCCCGCCT +
Preference number: 4 (lower is better)
Translates to: KDPYTGPEGKRAQAQPWSHSSLK*TWPCPP
Trigger: AGGCGGGCAAGGCCAAGTTCACTTGAGACTAGAATG...GCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GTCAGCCCTCAGCTCCTAGGAACCGCCCTTATCTCTGTCATCCATCAGGTCATATTGGGCCTGAGCTGCTaGGCTGGAACCACTGGTCCA +
Preference number: 4 (lower is better)
Translates to: VSPQLLGTALISVIHQVILGLSC*AGTTGP
Trigger: TGGACCAGTGGTTCCAGCTCAGCAGCTCAGGCCCAA...TATGACCTGATGGATGACAGAGATAAGGGCGGTTCCTAGGAGCTGAGGGCTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp AGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCAGTGGCCAGGCACGGGCATCCACACTGCTaGCTGTCTCTAGGCTCTCAC +
Preference number: 4 (lower is better)
Translates to: SCIWHERMPLLMLPVARHGHPHC*LSLGSH
Trigger: GTGAGAGCCTAGAGACAGGCAGCAGTGTGGATGCCC...GTGCCTGGCCACTGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCAGACTCACTTTATACCTaGCCAAAAAGTCATCCTTGT +
Preference number: 4 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSDSLYT*PKSHPC
Trigger: ACAAGGATGACTTTTTGGGCAGGTATAAAGTGAGTC...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp AGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCAGTGGCCAGGCACGCCCTGACCACTGAGTaGAAACCAGTGGTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: SCIWHERMPLLMLPVARHALTTE*KPVVQA
Trigger: TGCCTGGACCACTGGTTTGCACTCAGTGGTCAGGGC...GTGCCTGGCCACTGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp TCCTCTTCTTCTGCGGGGTCTTCCTCTTGGTGCTTCGGTTCTTGTCTGGGAGCAGCCCTGACCACTGAGTaGAAACCAGTGGTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: SSSSAGSSSWCFGSCLGAALTTE*KPVVQA
Trigger: TGCCTGGACCACTGGTTTGCACTCAGTGGTCAGGGC...TGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCCCGCAGAAGAAGAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGAGCTTCTCCATATACTaGCCTAGGAAGGGCCACACC +
Preference number: 4 (lower is better)
Translates to: QRPIYGPRRQKGTGSALESFSIY*PRKGHT
Trigger: GGTGTGGCCCTTCCTAGGCCAGTATATGGAGAAGCT...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp GAGGGACTGTCACCATGTGTTAGGCGATGCCTGACCTCTAGGACCGGGGAGGCACTGATAGTTGCACCATaGGGTTGGGTTCCTTGTTGC +
Preference number: 4 (lower is better)
Translates to: EGLSPCVRRCLTSRTGEALIVAP*GWVPCC
Trigger: GCAACAAGGAACCCAACCCCATGGTGCAACTATCAG...TGCCTCCCCGGTCCTAGAGGTCAGGCATCGCCTAACACATGGTGACAGTCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp GCTGCCAGTGGCCAGGCACAGGTGCGTGAGGCCCTGAGGAGTGGGAAGAAGGAATCAATCTCAAGCTCTTaGCCAGGGATTGATGTGACA +
Preference number: 4 (lower is better)
Translates to: AASGQAQVREALRSGKKESISSS*PGIDVT
Trigger: TGTCACATCAATCCCTGGCCAAGAGCTTGAGATTGA...TTCCTTCTTCCCACTCCTCAGGGCCTCACGCACCTGTGCCTGGCCACTGGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp CACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATGCAGGCATAAGCTGGGCCACATCTTaGAGGTCGGGCACAAGGGGC +
Preference number: 4 (lower is better)
Translates to: HTPLFILPYGWEDDHAGISWATS*RSGTRG
Trigger: GCCCCTTGTGCCCGACCTTCAAGATGTGGCCCAGCT...TATGCCTGCATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp GCTGCTCATCTTGTACAGGCAGTCGGAGAGACTCAGTCTGACCTTCACACCCCTACCACTGGTCCAGGGTaGGTTCAGAGGCAGTCAACA +
Preference number: 4 (lower is better)
Translates to: AAHLVQAVGETQSDLHTPTTGPG*VQRQST
Trigger: TGTTGACTGCCTCTGAACTCACCCTGGACCAGTGGT...AGGGGTGTGAAGGTCAGACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp AGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCAGTGGCCAGGCACACCACTGGTCCAGGGTaGGTTCAGAGGCAGTCAACA +
Preference number: 4 (lower is better)
Translates to: SCIWHERMPLLMLPVARHTTGPG*VQRQST
Trigger: TGTTGACTGCCTCTGAACTCACCCTGGACCAGTGGT...GTGCCTGGCCACTGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp AGGAGTGGGAAGAAGGAAGAGGTAACAGGCAGATCAGGAAATAGCCAGCTCAGGTGGTCCAGGCAGAGCTaGTCCTCCTGGAGGAGCTCA +
Preference number: 4 (lower is better)
Translates to: RSGKKEEVTGRSGNSQLRWSRQS*SSWRSS
Trigger: TGAGCTCCTCCAGGAGGACCAGCTCTGCCTGGACCA...CCTGAGCTGGCTATTTCCTGATCTGCCTGTTACCTCTTCCTTCTTCCCACTCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp AGATCCAGCTGCACCTTCCCCAGAAGCTCACGCTCTCGTGACATGAAGGAGGAGACAGGGGCCGAAGATTaGGAGACAGTCTGTTGGAGA +
Preference number: 4 (lower is better)
Translates to: RSSCTFPRSSRSRDMKEETGAED*ETVCWR
Trigger: TCTCCAACAGACTGTCTCCCAATCTTCGGCCCCTGT...CTCCTCCTTCATGTCACGAGAGCGTGAGCTTCTGGGGAAGGTGCAGCTGGATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
3UTR CAA 72 bp CACAGCCACCATAGCACATATATTTTCAAGAGTGGATaGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGG +
Preference number: 4 (lower is better)
Translates to: HSHHSTYIFKSG*SKAGGEELDTG
Trigger: CCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCCACTCTTGAAAATATATGTGCTATGGTGGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
3UTR CAA 72 bp GGATTGAGGGTCCTCTTCTTCTGCGGGGTCTTCCTCTaGGTGCTTCGGTTCTTGTCTGGGAGCAGCAACACT +
Preference number: 4 (lower is better)
Translates to: GLRVLFFCGVFL*VLRFLSGSSNT
Trigger: AGTGTTGCTGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCCCGCAGAAGAAGAGGACCCTCAATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp CCTCAGCTCCTAGGAACCGCCCTTATCTCTGTCATCCATCAGGTCATACCACTGTTTGACGTAGGGGTCTaGTTTGCCCTTCACCAGGCC +
Preference number: 4 (lower is better)
Translates to: PQLLGTALISVIHQVIPLFDVGV*FALHQA
Trigger: GGCCTGGTGAAGGGCAAATCAGACCCCTACGTCAAA...CAGTGGTATGACCTGATGGATGACAGAGATAAGGGCGGTTCCTAGGAGCTGAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp AGGAGTGGGAAGAAGGAAGAGGTAACAGGCAGATCAGGAAATAGCCAGCTCAGGATCAGCACCTGGCCCTaGCCACTGAGTGCAAACCAG +
Preference number: 4 (lower is better)
Translates to: RSGKKEEVTGRSGNSQLRISTWP*PLSANQ
Trigger: CTGGTTTGCACTCAGTGGTCAGGGCCAGGTGCTGAT...CCTGAGCTGGCTATTTCCTGATCTGCCTGTTACCTCTTCCTTCTTCCCACTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp AGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCAGTGGCCAGGCACGGGTCTTCCTCTTGGTaGTTCGGTTCTTGTCTGGGA +
Preference number: 4 (lower is better)
Translates to: SCIWHERMPLLMLPVARHGSSSW*FGSCLG
Trigger: TCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCC...GTGCCTGGCCACTGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp GTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCCTACCTTGGTTTTATaGGAAGTCTCTCCCACGGTG +
Preference number: 4 (lower is better)
Translates to: VKQRPIYGPRRQKGTGSAPTLVL*EVSPTV
Trigger: CACCGTGGGAGAGACTTCCCATAAAACCAAGGTAGG...GGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp CCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGGAGCTGCATGCCCTTaGCTCCAGCTTTGCAGAAAT +
Preference number: 4 (lower is better)
Translates to: PLWSSKDPYTGPEGKRAQGAACP*LQLCRN
Trigger: ATTTCTGCAAAGCTGGAGTCAAGGGCATGCAGCTCC...CTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp GCTGCTCATCTTGTACAGGCAGTCGGAGAGACTCAGTCTGACCTTCACACCCCTCAGCAATGGAGTCCATaGTCATGGTGTCAGAGAGTG +
Preference number: 4 (lower is better)
Translates to: AAHLVQAVGETQSDLHTPQQWSP*SWCQRV
Trigger: CACTCTCTGACACCATGATCATGGACTCCATTGCTG...AGGGGTGTGAAGGTCAGACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp CCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGTATGTCTCTCCCCAGTaGGGGTTGAGCTCCTCATCT +
Preference number: 4 (lower is better)
Translates to: PLWSSKDPYTGPEGKRAQYVSPQ*GLSSSS
Trigger: AGATGAGGAGCTCAACCCTCACTGGGGAGAGACATA...CTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp GCAACACTGACACATAGGGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGCCCCTGCCACCTTTAGTTTaGCGTAGGGGTCTGATTTGC +
Preference number: 4 (lower is better)
Translates to: ATLTHRGLGDHVHFVEGPLPPLV*RRGLIC
Trigger: GCAAATCAGACCCCTACGTCAAACTAAAGGTGGCAG...GGGCCCTTCGACAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAGTGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp ATCCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACTGGCTTCGAGGGTCCTaGAGGAAAAACCGGAAAGCC +
Preference number: 4 (lower is better)
Translates to: ILFGQAKTHIRAQKAKGHWLRGS*RKNRKA
Trigger: GGCTTTCCGGTTTTTCCTGCAGGACCCTCGAAGCCA...GTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGTCAATCTCAAGCTCTTaGCCAGGGATTGATGTGACA +
Preference number: 4 (lower is better)
Translates to: QRPIYGPRRQKGTGSALESISSS*PGIDVT
Trigger: TGTCACATCAATCCCTGGCCAAGAGCTTGAGATTGA...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp AGGAGTGGGAAGAAGGAAGAGGTAACAGGCAGATCAGGAAATAGCCAGCTCAGGGCGGGGTCTTCCTCTTaGTGCTTCGGTTCTTGTCTG +
Preference number: 4 (lower is better)
Translates to: RSGKKEEVTGRSGNSQLRAGSSS*CFGSCL
Trigger: CAGACAAGAACCGAAGCACCAAGAGGAAGACCCCGC...CCTGAGCTGGCTATTTCCTGATCTGCCTGTTACCTCTTCCTTCTTCCCACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR TCA 90 bp AGGAGTGGGAAGAAGGAAGAGGTAACAGGCAGATCAGGAAATAGCCAGCTCAGGTCCCGGGTCACATCCTaGACTGATAGTTGCACCATG +
Preference number: 4 (lower is better)
Translates to: RSGKKEEVTGRSGNSQLRSRVTS*TDSCTM
Trigger: CATGGTGCAACTATCAGTTCAGGATGTGACCCGGGA...CCTGAGCTGGCTATTTCCTGATCTGCCTGTTACCTCTTCCTTCTTCCCACTCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR GCA 90 bp TCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATACCAGGATCCCAAGCTaGGCTCTCATCAGCACCTGG +
Preference number: 4 (lower is better)
Translates to: SDLHTPLFILPYGWEDDHTRIPS*ALISTW
Trigger: CCAGGTGCTGATGAGAGCGCAGCTTGGGATCCTGGT...ATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp ATCCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACGTTTCATGTAGAGCCTaGAGTTTGGGCCTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: ILFGQAKTHIRAQKAKGHVSCRA*SLGLSC
Trigger: GCAGCTCAGGCCCAAACTCCAGGCTCTACATGAAAC...GTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp TCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATTCATCCCTGTCCAGTTaGTGTCAAGCGTCGGGCGTT +
Preference number: 4 (lower is better)
Translates to: SDLHTPLFILPYGWEDDHSSLSS*CQASGV
Trigger: AACGCCCGACGCTTGACATCAACTGGACAGGGATGA...ATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp ATCCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACCTGATAGTTGCACCATaGGGTTGGGTTCCTTGTTGC +
Preference number: 4 (lower is better)
Translates to: ILFGQAKTHIRAQKAKGHLIVAP*GWVPCC
Trigger: GCAACAAGGAACCCAACCCCATGGTGCAACTATCAG...GTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp TCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATTCCCGGGTCACATCCTaGACTGATAGTTGCACCATG +
Preference number: 4 (lower is better)
Translates to: SDLHTPLFILPYGWEDDHSRVTS*TDSCTM
Trigger: CATGGTGCAACTATCAGTTCAGGATGTGACCCGGGA...ATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp GAGCTTTCCAAAAGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCAGTTTCATGTAGAGCCTaGAGTTTGGGCCTGAGCTGC +
Preference number: 4 (lower is better)
Translates to: ELSKSCIWHERMPLLMLPVSCRA*SLGLSC
Trigger: GCAGCTCAGGCCCAAACTCCAGGCTCTACATGAAAC...TGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCTTTTGGAAAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp GAGCTTTCCAAAAGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCACATTCCAGCGGGGATTaGGATCTTCCCGAACAACAT +
Preference number: 4 (lower is better)
Translates to: ELSKSCIWHERMPLLMLPHSSGD*DLPEQH
Trigger: ATGTTGTTCGGGAAGATCTCAATCCCCGCTGGAATG...TGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCTTTTGGAAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR TCA 90 bp ATAAAGGCCGTGCAGAAAGGAGTAACATGTGATCCTCTTTGGTCAAGCAAAGACGGCTGCTGCCAGCTCTaGACTCTTCTGAGTCTGGAT +
Preference number: 4 (lower is better)
Translates to: IKAVQKGVTCDPLWSSKDGCCQL*TLLSLD
Trigger: ATCCAGACTCAGAAGAGTTCAGAGCTGGCAGCAGCC...GTCTTTGCTTGACCAAAGAGGATCACATGTTACTCCTTTCTGCACGGCCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATGCAGGCATACCAAGAAACGGTCTTTaGCAATTAGGTCCTGCGCTT +
Preference number: 4 (lower is better)
Translates to: HTPLFILPYGWEDDHAGIPRNGL*QLGPAL
Trigger: AAGCGCAGGACCTAATTGCCAAAGACCGTTTCTTGG...TATGCCTGCATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CCA 90 bp CACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATGCAGGCATAACAGGGGCCGAAGATTaGGAGACAGTCTTGGTTTTA +
Preference number: 4 (lower is better)
Translates to: HTPLFILPYGWEDDHAGITGAED*ETVLVL
Trigger: TAAAACCAAGACTGTCTCCCAATCTTCGGCCCCTGT...TATGCCTGCATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR GCA 90 bp TGCACCTTCCCCAGAAGCTCACGCTCTCGTGACATGAAGGAGGAGTTTGACTTCGACTCACTTTATACCTaGCCAAAAAGTCATCCTTGT +
Preference number: 4 (lower is better)
Translates to: CTFPRSSRSRDMKEEFDFDSLYT*PKSHPC
Trigger: ACAAGGATGACTTTTTGGGCAGGTATAAAGTGAGTC...GAAGTCAAACTCCTCCTTCATGTCACGAGAGCGTGAGCTTCTGGGGAAGGTGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CCA 90 bp CACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATGCAGGCATATCTTCCCGAACAACATaGGTCCGGAAACTTTTTCCT +
Preference number: 4 (lower is better)
Translates to: HTPLFILPYGWEDDHAGISSRTT*VRKLFP
Trigger: AGGAAAAAGTTTCCGGACCCATGTTGTTCGGGAAGA...TATGCCTGCATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS GCA 90 bp CGTCTCTGCGGTGATCCGCTCCTCGTCATCCAGCAGCTGCCTCGCTaGCCTCAGGCTCCGTTCTTTCCCATCGCGGACCCGGCGCCAGCC +
Preference number: 5 (lower is better)
Translates to: RLCGDPLLVIQQLPR*PQAPFFPIADPAPA
Trigger: GGCTGGCGCCGGGTCCGCGATGGGAAAGAACGGAGCCTGAGGGCAGCGAGGCAGCTGCTGGATGACGAGGAGCGGATCACCGCAGAGACG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS GCA 90 bp GGCGAGGCCGAAAAGCACGAAACCTACGCTAAGACCCGCTGCCCCTaGCAGGTACACCGGCACCAGCACCAACAAGCGGCGCCCGAAGGA +
Preference number: 5 (lower is better)
Translates to: GEAEKHETYAKTRCP*QVHRHQHQQAAPEG
Trigger: TCCTTCGGGCGCCGCTTGTTGGTGCTGGTGCCGGTGTACCTGGCAGGGGCAGCGGGTCTTAGCGTAGGTTTCGTGCTTTTCGGCCTCGCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS GCA 90 bp GTACAGGGCGAGGCCGAAAAGCACGAAACCTACGCTAAGACCCGCTaGCCCTGCCAGGTACACCGGCACCAGCACCAACAAGCGGCGCCC +
Preference number: 5 (lower is better)
Translates to: VQGEAEKHETYAKTR*PCQVHRHQHQQAAP
Trigger: GGGCGCCGCTTGTTGGTGCTGGTGCCGGTGTACCTGGCAGGGGCAGCGGGTCTTAGCGTAGGTTTCGTGCTTTTCGGCCTCGCCCTGTAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS GCA 90 bp AACTCAGCAGCAGTCGGTCTAGGGGTCAGACGCTCCAGGCGCAAGTaGAGGCGCCCGGATGGGACATCCTCCAGGGTCAGCCACTCATCA +
Preference number: 5 (lower is better)
Translates to: NSAAVGLGVRRSRRK*RRPDGTSSRVSHSS
Trigger: TGATGAGTGGCTGACCCTGGAGGATGTCCCATCCGGGCGCCTGCACTTGCGCCTGGAGCGTCTGACCCCTAGACCGACTGCTGCTGAGTT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTCCTAGGCAAGTGAACTTGGCCTaGCCCGCCTTGCAGAGGGTA +
Preference number: 5 (lower is better)
Translates to: EARREDGAVPGCQPSAPRQVNLA*PALQRV
Trigger: TACCCTCTGCAAGGCGGGCAAGGCCAAGTTCACTTG...CCTAGGAGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTGAGATCACGTCCATTTaGTCGAAGGGCCCGGCAGCT +
Preference number: 5 (lower is better)
Translates to: GQEARREDGAVPGCQPSAEITSI*SKGPAA
Trigger: AGCTGCCGGGCCCTTCGACAAAATGGACGTGATCTC...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CCA 90 bp CGGTCTAGGGGTCAGACGCTCCAGGCGCAAGTGCAGGCGCCCGGATaGGACATCCTCCAGGGTCAGCCACTCATCAAGAAAGCCACTGTT +
Preference number: 5 (lower is better)
Translates to: RSRGQTLQAQVQAPG*DILQGQPLIKKATV
Trigger: AACAGTGGCTTTCTTGATGAGTGGCTGACCCTGGAGGATGTCCCATCCGGGCGCCTGCACTTGCGCCTGGAGCGTCTGACCCCTAGACCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTTGGGGATATCTAGCAGGTaGGTCATCCCTGTCCAGTTG +
Preference number: 5 (lower is better)
Translates to: EQGGRGGAGHGAQLLLILGISSR*VIPVQL
Trigger: CAACTGGACAGGGATGACCAACCTGCTAGATATCCC...CAAGATGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp GCTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGCCCAAGAAACGGTCTTaGGCAATTAGGTCCTGCGCT +
Preference number: 5 (lower is better)
Translates to: AQPWSRAVEAHHTGARGEPKKRS*AIRSCA
Trigger: AGCGCAGGACCTAATTGCCAAAGACCGTTTCTTGGG...CTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp CGTCGCTGTGGTACCACACTGTCAGCTTCACCTGGCCCAGGGGCCCAACGGGAGGGCCGGTACAGGATCTaGCAGTCTTCTACCTCCTGT +
Preference number: 5 (lower is better)
Translates to: RRCGTTLSASPGPGAQREGRYRI*QSSTSC
Trigger: ACAGGAGGTAGAAGACTGCAAGATCCTGTACCGGCC...CTCCCGTTGGGCCCCTGGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp AAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCAGCTGGGCCACATCTaGAAGGTCGGGCACAAGGGG +
Preference number: 5 (lower is better)
Translates to: KDPYTGPEGKRAQAQPWSQLGHI*KVGHKG
Trigger: CCCCTTGTGCCCGACCTTCAAGATGTGGCCCAGCTG...GCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTGCGGGGTCTTCCTCTaGGTGCTTCGGTTCTTGTCT +
Preference number: 5 (lower is better)
Translates to: AHHTGARGEARRRSSARLCGVFL*VLRFLS
Trigger: AGACAAGAACCGAAGCACCAAGAGGAAGACCCCGCA...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCACACTCAAACCGCTCATaGAACTCAGGATTGAGGGTC +
Preference number: 5 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSHSNRS*NSGLRV
Trigger: GACCCTCAATCCTGAGTTCAATGAGCGGTTTGAGTG...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTTTCACATACTTGTCCTaGGAACTCAGACCTCGGGCT +
Preference number: 5 (lower is better)
Translates to: GQEARREDGAVPGCQPSAFTYLS*ELRPRA
Trigger: AGCCCGAGGTCTGAGTTCCAAGGACAAGTATGTGAA...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGAGGCCTTTCACATACTaGTCCTTGGAACTCAGACCT +
Preference number: 5 (lower is better)
Translates to: LSPGAALWRLITLGQEARRPFTY*SLELRP
Trigger: AGGTCTGAGTTCCAAGGACAAGTATGTGAAAGGCCT...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp ACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGGGGTTGGGTTCCTTGTaGCCTTTCTTCAGAGGAAGG +
Preference number: 5 (lower is better)
Translates to: THIRAQKAKGHRLSPGAAGLGSL*PFFRGR
Trigger: CCTTCCTCTGAAGAAAGGCAACAAGGAACCCAACCC...CGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GCTCATCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGAGTTGCACCATGGGGTaGGGTTCCTTGTTGCCTTTC +
Preference number: 5 (lower is better)
Translates to: AHHTGARGEARRRSSARLSCTMG*GSLLPF
Trigger: GAAAGGCAACAAGGAACCCAACCCCATGGTGCAACT...CAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGATGAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 90 bp AGTAGACAACGAGGATGGCAGCCGATGGGGGCTCTGGCCGAGAAGTaGTGCCCCGATTCCACTGCAGGACCTGATCCAGCTTCTCTGCAT +
Preference number: 5 (lower is better)
Translates to: SRQRGWQPMGALAEK*CPDSTAGPDPASLH
Trigger: ATGCAGAGAAGCTGGATCAGGTCCTGCAGTGGAATCGGGGCATCACTTCTCGGCCAGAGCCCCCATCGGCTGCCATCCTCGTTGTCTACT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp TATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCCGCGCTGTGATGGGGTTGGGTTCCTaGTTGCCTTTCTTCAGAGGA +
Preference number: 5 (lower is better)
Translates to: YTGPEGKRAQAQPWSRAVMGLGS*LPFFRG
Trigger: TCCTCTGAAGAAAGGCAACAAGGAACCCAACCCCAT...CACAGCGCGGCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCCCTCAGCTTCATTGAACTCAGGATaGAGGGTCCTCTTCTTCTGC +
Preference number: 5 (lower is better)
Translates to: GQEARREDGAVPGCQPSASLNSG*RVLFFC
Trigger: GCAGAAGAAGAGGACCCTCAATCCTGAGTTCAATGA...AGCTGAGGGCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp AAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGCGACAGGGGCCGAAGATaGGGAGACAGTCTGTTGGAG +
Preference number: 5 (lower is better)
Translates to: KDPYTGPEGKRAQAQPWSDRGRR*GDSLLE
Trigger: CTCCAACAGACTGTCTCCCAATCTTCGGCCCCTGTC...GCTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS TCA 90 bp GGGGGCTCTGGCCGAGAAGTGATGCCCCGATTCCACTGCAGGACCTaGTCCAGCTTCTCTGCATCTGGCAGGAGTGATAGCCATTCTAGT +
Preference number: 5 (lower is better)
Translates to: GGSGREVMPRFHCRT*SSFSASGRSDSHSS
Trigger: ACTAGAATGGCTATCACTCCTGCCAGATGCAGAGAAGCTGGATCAGGTCCTGCAGTGGAATCGGGGCATCACTTCTCGGCCAGAGCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS GCA 90 bp GAGTCGTCCTTCACCTGTACATCAAGCTCCTGGCTTCGAGGGTCCTaGAGGAAAAACCGGAAAGCCTCTTCCCACACCGGGCTGTTGGTG +
Preference number: 5 (lower is better)
Translates to: ESSFTCTSSSWLRGS*RKNRKASSHTGLLV
Trigger: CACCAACAGCCCGGTGTGGGAAGAGGCTTTCCGGTTTTTCCTGCAGGACCCTCGAAGCCAGGAGCTTGATGTACAGGTGAAGGACGACTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GGATTGAGCAAGGCGGGAGGGGAGGAGCTGGACACGGGGCCCAGCTGCTGCTCATCTTTATCTGGATCTTaGTCAAATACCTCCACCTCG +
Preference number: 5 (lower is better)
Translates to: GLSKAGGEELDTGPSCCSSLSGS*SNTSTS
Trigger: CGAGGTGGAGGTATTTGACAAAGATCCAGATAAAGA...TGAGCAGCAGCTGGGCCCCGTGTCCAGCTCCTCCCCTCCCGCCTTGCTCAATCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp CTCAGCCCTGGAGCCGCGCTGTGGAGGCTCATCACACTGGGGCAAGAGGCGAGGCCCAAAAAGTCATCCTaGTCCAAGTCCTTATCAAAG +
Preference number: 5 (lower is better)
Translates to: LSPGAALWRLITLGQEARPKKSS*SKSLSK
Trigger: CTTTGATAAGGACTTGGACAAGGATGACTTTTTGGG...CCTCGCCTCTTGCCCCAGTGTGATGAGCCTCCACAGCGCGGCTCCAGGGCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CCA 90 bp AAAGTCAGGGCTCGGGAGTCGTCCTTCACCTGTACATCAAGCTCCTaGCTTCGAGGGTCCTGCAGGAAAAACCGGAAAGCCTCTTCCCAC +
Preference number: 5 (lower is better)
Translates to: KVRARESSFTCTSSS*LRGSCRKNRKASSH
Trigger: GTGGGAAGAGGCTTTCCGGTTTTTCCTGCAGGACCCTCGAAGCCAGGAGCTTGATGTACAGGTGAAGGACGACTCCCGAGCCCTGACTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGTGGAGCTGCATGCCCTaGACTCCAGCTTTGCAGAAA +
Preference number: 5 (lower is better)
Translates to: QRPIYGPRRQKGTGSALEWSCMP*TPALQK
Trigger: TTTCTGCAAAGCTGGAGTCAAGGGCATGCAGCTCCA...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp CTGACACATAGGGGTCTGGGAGATCACGTCCATTTTGTCGAAGGGCCCGGCAGCGGGTTGGGTTCCTTGTaGCCTTTCTTCAGAGGAAGG +
Preference number: 5 (lower is better)
Translates to: LTHRGLGDHVHFVEGPGSGLGSL*PFFRGR
Trigger: CCTTCCTCTGAAGAAAGGCAACAAGGAACCCAACCC...GCTGCCGGGCCCTTCGACAAAATGGACGTGATCTCCCAGACCCCTATGTGTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGAGTTGCACCATGGGGTaGGGTTCCTTGTTGCCTTTC +
Preference number: 5 (lower is better)
Translates to: QRPIYGPRRQKGTGSALESCTMG*GSLLPF
Trigger: GAAAGGCAACAAGGAACCCAACCCCATGGTGCAACT...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp TCACACTGGGGCAAGAGGCGAGGCGAGAAGACGGAGCAGTGCCAGGCTGTCAGCGATTGGGAGACAGTCTaGGTTTTATGGGAAGTCTCT +
Preference number: 5 (lower is better)
Translates to: SHWGKRRGEKTEQCQAVSDWETV*VLWEVS
Trigger: AGAGACTTCCCATAAAACCAAGACTGTCTCCCAATC...GCTGACAGCCTGGCACTGCTCCGTCTTCTCGCCTCGCCTCTTGCCCCAGTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS TCA 90 bp GGCCGAAGATTGGGAGACAGTCTGTTGGAGACGGAGGGGTTAGGATaGCTGGCCGGTACAGGATCTTGCAGTCTTCTACCTCCTGTCCTT +
Preference number: 5 (lower is better)
Translates to: GRRLGDSLLETEGLG*LAGTGSCSLLPPVL
Trigger: AAGGACAGGAGGTAGAAGACTGCAAGATCCTGTACCGGCCAGTCATCCTAACCCCTCCGTCTCCAACAGACTGTCTCCCAATCTTCGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS GCA 90 bp AGAACGTCTGGGTGCCCACACGGACGAGCGCGTAGGGATCCGATTTaGCCTCAATCAGGCCTTTCACATACTTGTCCTTGGAACTCAGAC +
Preference number: 5 (lower is better)
Translates to: RTSGCPHGRARRDPI*PQSGLSHTCPWNSD
Trigger: GTCTGAGTTCCAAGGACAAGTATGTGAAAGGCCTGATTGAGGGCAAATCGGATCCCTACGCGCTCGTCCGTGTGGGCACCCAGACGTTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp CAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCCTGGAGTCAAGAAAGCCACTGTaGAGCACTGTGGTGAGACTC +
Preference number: 5 (lower is better)
Translates to: QRPIYGPRRQKGTGSALESRKPL*STVVRL
Trigger: GAGTCTCACCACAGTGCTCAACAGTGGCTTTCTTGA...CTCCAGGGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 90 bp TGTCCTGGAACCTCGTGGACTATCACCTCATATGTCTCTCCCCAGTaGGGGTTGAGCTCCTCATCTATGACACGGCTGCAGAACGTCTGG +
Preference number: 5 (lower is better)
Translates to: CPGTSWTITSYVSPQ*GLSSSSMTRLQNVW
Trigger: CCAGACGTTCTGCAGCCGTGTCATAGATGAGGAGCTCAACCCTCACTGGGGAGAGACATATGAGGTGATAGTCCACGAGGTTCCAGGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CCA 90 bp AAAGAACATGGACACAGCCCCCACGATAGGAAGGTCCCCTGTGAGTaGCTCAAGAATCACTCGCAAGACACCATGGAGCTGCATGCCCTT +
Preference number: 5 (lower is better)
Translates to: KEHGHSPHDRKVPCE*LKNHSQDTMELHAL
Trigger: AAGGGCATGCAGCTCCATGGTGTCTTGCGAGTGATTCTTGAGCCACTCACAGGGGACCTTCCTATCGTGGGGGCTGTGTCCATGTTCTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp AGGAGTGGGAAGAAGGAAGAGGTAACAGGCAGATCAGGAAATAGCCAGCTCAGGGTCATCCCTGTCCAGTaGATGTCAAGCGTCGGGCGT +
Preference number: 5 (lower is better)
Translates to: RSGKKEEVTGRSGNSQLRVIPVQ*MSSVGR
Trigger: ACGCCCGACGCTTGACATCAACTGGACAGGGATGAC...CCTGAGCTGGCTATTTCCTGATCTGCCTGTTACCTCTTCCTTCTTCCCACTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp CCCTCAGCTCCTAGGAACCGCCCTTATCTCTGTCATCCATCAGGTCATACCACTTTGGCCTTGCCCGCCTaGCAGAGGGTACCAATTATC +
Preference number: 5 (lower is better)
Translates to: PSAPRNRPYLCHPSGHTTLALPA*QRVPII
Trigger: GATAATTGGTACCCTCTGCAAGGCGGGCAAGGCCAA...AGTGGTATGACCTGATGGATGACAGAGATAAGGGCGGTTCCTAGGAGCTGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp AGACTCAGTCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGCAAGTGAACTTGGCCTaGCCCGCCTTGCAGAGGGTA +
Preference number: 5 (lower is better)
Translates to: RLSLTFTPLCLFSLMAGKQVNLA*PALQRV
Trigger: TACCCTCTGCAAGGCGGGCAAGGCCAAGTTCACTTG...CTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGACTGAGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp CCCTCAGCTCCTAGGAACCGCCCTTATCTCTGTCATCCATCAGGTCATACCACTCCCAAGAAACGGTCTTaGGCAATTAGGTCCTGCGCT +
Preference number: 5 (lower is better)
Translates to: PSAPRNRPYLCHPSGHTTPKKRS*AIRSCA
Trigger: AGCGCAGGACCTAATTGCCAAAGACCGTTTCTTGGG...AGTGGTATGACCTGATGGATGACAGAGATAAGGGCGGTTCCTAGGAGCTGAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACAGGCTCAGCCAATGCTGATCAGCTTTaGTTCGTCGCTGTGGTACCA +
Preference number: 5 (lower is better)
Translates to: VKQRPIYGPRRQKGTGSANADQL*FVAVVP
Trigger: TGGTACCACAGCGACGAACAAAAGCTGATCAGCATT...GGCTGAGCCTGTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp AGGAGTGGGAAGAAGGAAGAGGTAACAGGCAGATCAGGAAATAGCCAGCTCAGGTTGGGAGACAGTCTGTaGGAGACGGAGGGGTTAGGA +
Preference number: 5 (lower is better)
Translates to: RSGKKEEVTGRSGNSQLRLGDSL*ETEGLG
Trigger: TCCTAACCCCTCCGTCTCCAACAGACTGTCTCCCAA...CCTGAGCTGGCTATTTCCTGATCTGCCTGTTACCTCTTCCTTCTTCCCACTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS TCA 90 bp AGCTTCTCTGCATCTGGCAGGAGTGATAGCCATTCTAGTCTCAAGTaGACTTGGCCTTGCCCGCCTTGCAGAGGGTACCAATTATCCAGG +
Preference number: 5 (lower is better)
Translates to: SFSASGRSDSHSSLK*TWPCPPCRGYQLSR
Trigger: CCTGGATAATTGGTACCCTCTGCAAGGCGGGCAAGGCCAAGTTCACTTGAGACTAGAATGGCTATCACTCCTGCCAGATGCAGAGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 90 bp CCCGAACAACATGGGTCCGGAAACTTTTTCCTGCCACCTTTAGTTTaGCGTAGGGGTCTGATTTGCCCTTCACCAGGCCTCCCAAGAAAC +
Preference number: 5 (lower is better)
Translates to: PEQHGSGNFFLPPLV*RRGLICPSPGLPRN
Trigger: GTTTCTTGGGAGGCCTGGTGAAGGGCAAATCAGACCCCTACGTCAAACTAAAGGTGGCAGGAAAAAGTTTCCGGACCCATGTTGTTCGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GGGTCTTCCTCTTGGTGCTTCGGTTCTTGTCTGGGAGCAGCAACACTGACACATTCAAGAAAGCCACTGTaGAGCACTGTGGTGAGACTC +
Preference number: 5 (lower is better)
Translates to: GSSSWCFGSCLGAATLTHSRKPL*STVVRL
Trigger: GAGTCTCACCACAGTGCTCAACAGTGGCTTTCTTGA...ATGTGTCAGTGTTGCTGCTCCCAGACAAGAACCGAAGCACCAAGAGGAAGACCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp CTGATCAGCTTTTGTTCGTCGCTGTGGTACCACACTGTCAGCTTCACCTGGCCCGCATCTCCTCCTACCTaGGTTTTATGGGAAGTCTCT +
Preference number: 5 (lower is better)
Translates to: LISFCSSLWYHTVSFTWPASPPT*VLWEVS
Trigger: AGAGACTTCCCATAAAACCAAGGTAGGAGGAGATGC...GGGCCAGGTGAAGCTGACAGTGTGGTACCACAGCGACGAACAAAAGCTGATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp GCTGCTCATCTTGTACAGGCAGTCGGAGAGACTCAGTCTGACCTTCACACCCCTCCCTTGACTCCAGCTTaGCAGAAATATTTCTTCACC +
Preference number: 5 (lower is better)
Translates to: AAHLVQAVGETQSDLHTPPLTPA*QKYFFT
Trigger: GGTGAAGAAATATTTCTGCAAAGCTGGAGTCAAGGG...AGGGGTGTGAAGGTCAGACTGAGTCTCTCCGACTGCCTGTACAAGATGAGCAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CCA 90 bp AGGGGTCTGATTTGCCCTTCACCAGGCCTCCCAAGAAACGGTCTTTaGCAATTAGGTCCTGCGCTTCTAATACATGGATCCGAAGAACAT +
Preference number: 5 (lower is better)
Translates to: RGLICPSPGLPRNGL*QLGPALLIHGSEEH
Trigger: ATGTTCTTCGGATCCATGTATTAGAAGCGCAGGACCTAATTGCCAAAGACCGTTTCTTGGGAGGCCTGGTGAAGGGCAAATCAGACCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp AGAAGCTCACGCTCTCGTGACATGAAGGAGGAGTTTGACTTCACAGAGACATCGATGGGGTTGGGTTCCTaGTTGCCTTTCTTCAGAGGA +
Preference number: 5 (lower is better)
Translates to: RSSRSRDMKEEFDFTETSMGLGS*LPFFRG
Trigger: TCCTCTGAAGAAAGGCAACAAGGAACCCAACCCCAT...CGATGTCTCTGTGAAGTCAAACTCCTCCTTCATGTCACGAGAGCGTGAGCTTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS CCA 90 bp TTTATCTGGATCTTTGTCAAATACCTCCACCTCGATCTCCTGTCCTaGAACCTCGTGGACTATCACCTCATATGTCTCTCCCCAGTGAGG +
Preference number: 5 (lower is better)
Translates to: FIWIFVKYLHLDLLS*NLVDYHLICLSPVR
Trigger: CCTCACTGGGGAGAGACATATGAGGTGATAGTCCACGAGGTTCCAGGACAGGAGATCGAGGTGGAGGTATTTGACAAAGATCCAGATAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp ATAAAGGCCGTGCAGAAAGGAGTAACATGTGATCCTCTTTGGTCAAGCAAAGACTTGGCCTTGCCCGCCTaGCAGAGGGTACCAATTATC +
Preference number: 5 (lower is better)
Translates to: IKAVQKGVTCDPLWSSKDLALPA*QRVPII
Trigger: GATAATTGGTACCCTCTGCAAGGCGGGCAAGGCCAA...GTCTTTGCTTGACCAAAGAGGATCACATGTTACTCCTTTCTGCACGGCCTTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp TCTGACCTTCACACCCCTCTGTTTATTCTCCCTTATGGCTGGGAAGATGACCATTCATTCCAGCGGGGATaGAGATCTTCCCGAACAACA +
Preference number: 5 (lower is better)
Translates to: SDLHTPLFILPYGWEDDHSFQRG*RSSRTT
Trigger: TGTTGTTCGGGAAGATCTCAATCCCCGCTGGAATGA...ATGGTCATCTTCCCAGCCATAAGGGAGAATAAACAGAGGGGTGTGAAGGTCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS-3UTR CAA 90 bp GAGCTTTCCAAAAGCTGTATTTGGCATGAGCGAATGCCACTGCTAATGCTGCCATCATTCCAGCGGGGATaGAGATCTTCCCGAACAACA +
Preference number: 5 (lower is better)
Translates to: ELSKSCIWHERMPLLMLPSFQRG*RSSRTT
Trigger: TGTTGTTCGGGAAGATCTCAATCCCCGCTGGAATGA...TGGCAGCATTAGCAGTGGCATTCGCTCATGCCAAATACAGCTTTTGGAAAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CCA 90 bp CCCAAGAAACGGTCTTTGGCAATTAGGTCCTGCGCTTCTAATACATaGATCCGAAGAACATTCTCAGTCCCAAAGTGGCTGTTAGGGGTT +
Preference number: 5 (lower is better)
Translates to: PKKRSLAIRSCASNT*IRRTFSVPKWLLGV
Trigger: AACCCCTAACAGCCACTTTGGGACTGAGAATGTTCTTCGGATCCATGTATTAGAAGCGCAGGACCTAATTGCCAAAGACCGTTTCTTGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS-3UTR CAA 90 bp ATCCTCTTTGGTCAAGCAAAGACCCATATACGGGCCCAGAAGGCAAAAGGGCACCCCAAAAAGTCATCCTaGTCCAAGTCCTTATCAAAG +
Preference number: 5 (lower is better)
Translates to: ILFGQAKTHIRAQKAKGHPKKSS*SKSLSK
Trigger: CTTTGATAAGGACTTGGACAAGGATGACTTTTTGGG...GTGCCCTTTTGCCTTCTGGGCCCGTATATGGGTCTTTGCTTGACCAAAGAGGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS GCA 72 bp GCAGTCGGTCTAGGGGTCAGACGCTCCAGGCGCAAGTaGAGGCGCCCGGATGGGACATCCTCCAGGGTCAGC +
Preference number: 6 (lower is better)
Translates to: AVGLGVRRSRRK*RRPDGTSSRVS
Trigger: GCTGACCCTGGAGGATGTCCCATCCGGGCGCCTGCACTTGCGCCTGGAGCGTCTGACCCCTAGACCGACTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 72 bp CGAGGATGGCAGCCGATGGGGGCTCTGGCCGAGAAGTaGTGCCCCGATTCCACTGCAGGACCTGATCCAGCT +
Preference number: 6 (lower is better)
Translates to: RGWQPMGALAEK*CPDSTAGPDPA
Trigger: AGCTGGATCAGGTCCTGCAGTGGAATCGGGGCATCACTTCTCGGCCAGAGCCCCCATCGGCTGCCATCCTCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS GCA 72 bp GGGAGGCTTGGTACCTTTTCGGAGCGGCAGATCTTCTaGCCGCTCCAGGAAGACGGACAGCAGGGCTGCTGC +
Preference number: 6 (lower is better)
Translates to: GRLGTFSERQIF*PLQEDGQQGCC
Trigger: GCAGCAGCCCTGCTGTCCGTCTTCCTGGAGCGGGCAGAAGATCTGCCGCTCCGAAAAGGTACCAAGCCTCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS GCA 72 bp TTGTGTGATAGGGCCGAGGTGGGGCATCCACACTGCTaGCTGTCTCTAGGCTCTCACGGTCCCAGTCCTGGG +
Preference number: 6 (lower is better)
Translates to: LCDRAEVGHPHC*LSLGSHGPSPG
Trigger: CCCAGGACTGGGACCGTGAGAGCCTAGAGACAGGCAGCAGTGTGGATGCCCCACCTCGGCCCTATCACACAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS GCA 72 bp GGGTTGTGTGATAGGGCCGAGGTGGGGCATCCACACTaGTGCCTGTCTCTAGGCTCTCACGGTCCCAGTCCT +
Preference number: 6 (lower is better)
Translates to: GLCDRAEVGHPH*CLSLGSHGPSP
Trigger: AGGACTGGGACCGTGAGAGCCTAGAGACAGGCAGCAGTGTGGATGCCCCACCTCGGCCCTATCACACAACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CCA 72 bp GGTCAGACGCTCCAGGCGCAAGTGCAGGCGCCCGGATaGGACATCCTCCAGGGTCAGCCACTCATCAAGAAA +
Preference number: 6 (lower is better)
Translates to: GQTLQAQVQAPG*DILQGQPLIKK
Trigger: TTTCTTGATGAGTGGCTGACCCTGGAGGATGTCCCATCCGGGCGCCTGCACTTGCGCCTGGAGCGTCTGACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 72 bp AGGATCCCAAGCTGCGCTCTCATCAGCACCTGGCCCTaGCCACTGAGTGCAAACCAGTGGTCCAGGCAGAGC +
Preference number: 6 (lower is better)
Translates to: RIPSCALISTWP*PLSANQWSRQS
Trigger: GCTCTGCCTGGACCACTGGTTTGCACTCAGTGGTCAGGGCCAGGTGCTGATGAGAGCGCAGCTTGGGATCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS GCA 72 bp GAGGCCGAAAAGCACGAAACCTACGCTAAGACCCGCTaGCCCTGCCAGGTACACCGGCACCAGCACCAACAA +
Preference number: 6 (lower is better)
Translates to: EAEKHETYAKTR*PCQVHRHQHQQ
Trigger: TTGTTGGTGCTGGTGCCGGTGTACCTGGCAGGGGCAGCGGGTCTTAGCGTAGGTTTCGTGCTTTTCGGCCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CCA 72 bp CAAGTAGACAACGAGGATGGCAGCCGATGGGGGCTCTaGCCGAGAAGTGATGCCCCGATTCCACTGCAGGAC +
Preference number: 6 (lower is better)
Translates to: QVDNEDGSRWGL*PRSDAPIPLQD
Trigger: GTCCTGCAGTGGAATCGGGGCATCACTTCTCGGCCAGAGCCCCCATCGGCTGCCATCCTCGTTGTCTACTTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS GCA 72 bp GGGTGCCCACACGGACGAGCGCGTAGGGATCCGATTTaGCCTCAATCAGGCCTTTCACATACTTGTCCTTGG +
Preference number: 6 (lower is better)
Translates to: GCPHGRARRDPI*PQSGLSHTCPW
Trigger: CCAAGGACAAGTATGTGAAAGGCCTGATTGAGGGCAAATCGGATCCCTACGCGCTCGTCCGTGTGGGCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CCA 72 bp GGACACAGCCCCCACGATAGGAAGGTCCCCTGTGAGTaGCTCAAGAATCACTCGCAAGACACCATGGAGCTG +
Preference number: 6 (lower is better)
Translates to: GHSPHDRKVPCE*LKNHSQDTMEL
Trigger: CAGCTCCATGGTGTCTTGCGAGTGATTCTTGAGCCACTCACAGGGGACCTTCCTATCGTGGGGGCTGTGTCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS GCA 72 bp TTCACCTGTACATCAAGCTCCTGGCTTCGAGGGTCCTaGAGGAAAAACCGGAAAGCCTCTTCCCACACCGGG +
Preference number: 6 (lower is better)
Translates to: FTCTSSSWLRGS*RKNRKASSHTG
Trigger: CCCGGTGTGGGAAGAGGCTTTCCGGTTTTTCCTGCAGGACCCTCGAAGCCAGGAGCTTGATGTACAGGTGAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CCA 72 bp GGCTCTCACGGTCCCAGTCCTGGGCACCAGGCACAGTaGGGAAGCGGATTTCCGAGTAATCTAAGTATAAGA +
Preference number: 6 (lower is better)
Translates to: GSHGPSPGHQAQ*GSGFPSNLSIR
Trigger: TCTTATACTTAGATTACTCGGAAATCCGCTTCCCCACTGTGCCTGGTGCCCAGGACTGGGACCGTGAGAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CAA 72 bp GGATCCGATTTGCCCTCAATCAGGCCTTTCACATACTaGTCCTTGGAACTCAGACCTCGGGCTGCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: GSDLPSIRPFTY*SLELRPRAASR
Trigger: CCTGCTGGCAGCCCGAGGTCTGAGTTCCAAGGACAAGTATGTGAAAGGCCTGATTGAGGGCAAATCGGATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS TCA 72 bp AGCTTCTCCATATACTGGCCTAGGAAGGGCCACACCTaGGCCACGATCTTGTTCAGCCATTCGGCCTTTTCC +
Preference number: 6 (lower is better)
Translates to: SFSIYWPRKGHT*ATILFSHSAFS
Trigger: GGAAAAGGCCGAATGGCTGAACAAGATCGTGGCTCAGGTGTGGCCCTTCCTAGGCCAGTATATGGAGAAGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS TCA 72 bp ACCTCGTGGACTATCACCTCATATGTCTCTCCCCAGTaGGGGTTGAGCTCCTCATCTATGACACGGCTGCAG +
Preference number: 6 (lower is better)
Translates to: TSWTITSYVSPQ*GLSSSSMTRLQ
Trigger: CTGCAGCCGTGTCATAGATGAGGAGCTCAACCCTCACTGGGGAGAGACATATGAGGTGATAGTCCACGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS TCA 72 bp GCATCTGGCAGGAGTGATAGCCATTCTAGTCTCAAGTaGACTTGGCCTTGCCCGCCTTGCAGAGGGTACCAA +
Preference number: 6 (lower is better)
Translates to: ASGRSDSHSSLK*TWPCPPCRGYQ
Trigger: TTGGTACCCTCTGCAAGGCGGGCAAGGCCAAGTTCACTTGAGACTAGAATGGCTATCACTCCTGCCAGATGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 72 bp CATGGGTCCGGAAACTTTTTCCTGCCACCTTTAGTTTaGCGTAGGGGTCTGATTTGCCCTTCACCAGGCCTC +
Preference number: 6 (lower is better)
Translates to: HGSGNFFLPPLV*RRGLICPSPGL
Trigger: GAGGCCTGGTGAAGGGCAAATCAGACCCCTACGTCAAACTAAAGGTGGCAGGAAAAAGTTTCCGGACCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CCA 72 bp CCTGTGAGTGGCTCAAGAATCACTCGCAAGACACCATaGAGCTGCATGCCCTTGACTCCAGCTTTGCAGAAA +
Preference number: 6 (lower is better)
Translates to: PVSGSRITRKTP*SCMPLTPALQK
Trigger: TTTCTGCAAAGCTGGAGTCAAGGGCATGCAGCTCCATGGTGTCTTGCGAGTGATTCTTGAGCCACTCACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CAA 72 bp TCCTCCAGGGTCAGCCACTCATCAAGAAAGCCACTGTaGAGCACTGTGGTGAGACTCACTTTATACCTGCCC +
Preference number: 6 (lower is better)
Translates to: SSRVSHSSRKPL*STVVRLTLYLP
Trigger: GGGCAGGTATAAAGTGAGTCTCACCACAGTGCTCAACAGTGGCTTTCTTGATGAGTGGCTGACCCTGGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CAA 72 bp TCCTCCCAGACAGGGGCCGAAGATTGGGAGACAGTCTaGGTTTTATGGGAAGTCTCTCCCACGGTGATAGTA +
Preference number: 6 (lower is better)
Translates to: SSQTGAEDWETV*VLWEVSPTVIV
Trigger: TACTATCACCGTGGGAGAGACTTCCCATAAAACCAAGACTGTCTCCCAATCTTCGGCCCCTGTCTGGGAGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CAA 90 bp GAGCTAAGTCCTGGGATATCTAGCAGGTTGGTCATCCCTGTCCAGTaGATGTCAAGCGTCGGGCGTTTGATAAAGAACATGGACACAGCC +
Preference number: 6 (lower is better)
Translates to: ELSPGISSRLVIPVQ*MSSVGRLIKNMDTA
Trigger: GGCTGTGTCCATGTTCTTTATCAAACGCCCGACGCTTGACATCAACTGGACAGGGATGACCAACCTGCTAGATATCCCAGGACTTAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CAA 72 bp CCTCCTGTCCTTAGTAGCGGAGCATCTCCTCCTACCTaGGTTTTATGGGAAGTCTCTCCCACGGTGATAGTA +
Preference number: 6 (lower is better)
Translates to: PPVLSSGASPPT*VLWEVSPTVIV
Trigger: TACTATCACCGTGGGAGAGACTTCCCATAAAACCAAGGTAGGAGGAGATGCTCCGCTACTAAGGACAGGAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220429.2
CDS CAA 90 bp ATCATGGTGTCAGAGAGTGAGCTAAGTCCTGGGATATCTAGCAGGTaGGTCATCCCTGTCCAGTTGATGTCAAGCGTCGGGCGTTTGATA +
Preference number: 6 (lower is better)
Translates to: IMVSESELSPGISSR*VIPVQLMSSVGRLI
Trigger: TATCAAACGCCCGACGCTTGACATCAACTGGACAGGGATGACCAACCTGCTAGATATCCCAGGACTTAGCTCACTCTCTGACACCATGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8
CDS CCA 72 bp CGGTCTTTGGCAATTAGGTCCTGCGCTTCTAATACATaGATCCGAAGAACATTCTCAGTCCCAAAGTGGCTG +
Preference number: 6 (lower is better)
Translates to: RSLAIRSCASNT*IRRTFSVPKWL
Trigger: CAGCCACTTTGGGACTGAGAATGTTCTTCGGATCCATGTATTAGAAGCGCAGGACCTAATTGCCAAAGACCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS CAA 72 bp GTGACAATCACCTCAAAAACCTCATTCCAGCGGGGATaGAGATCTTCCCGAACAACATGGGTCCGGAAACTT +
Preference number: 6 (lower is better)
Translates to: VTITSKTSFQRG*RSSRTTWVRKL
Trigger: AAGTTTCCGGACCCATGTTGTTCGGGAAGATCTCAATCCCCGCTGGAATGAGGTTTTTGAGGTGATTGTCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 72 bp AGCGGATTTCCGAGTAATCTAAGTATAAGATCCGCATaGCCAGTTTCATGTAGAGCCTGGAGTTTGGGCCTG +
Preference number: 6 (lower is better)
Translates to: SGFPSNLSIRSA*PVSCRAWSLGL
Trigger: CAGGCCCAAACTCCAGGCTCTACATGAAACTGGTCATGCGGATCTTATACTTAGATTACTCGGAAATCCGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 72 bp ATCAAAGACCTCAATCTCAAGCTCTTGGCCAGGGATTaGTGTGACAATCACCTCAAAAACCTCATTCCAGCG +
Preference number: 6 (lower is better)
Translates to: IKDLNLKLLARD*CDNHLKNLIPA
Trigger: CGCTGGAATGAGGTTTTTGAGGTGATTGTCACATCAATCCCTGGCCAAGAGCTTGAGATTGAGGTCTTTGAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000026427.8
ENSMUST00000220429.2
CDS TCA 72 bp TCACCTCCACGTCAATCTGTACATCACCTACATAGCTaGCATTCAAGTCCAACAGAATCTGATCTTTCCTCT +
Preference number: 6 (lower is better)
Translates to: SPPRQSVHHLHS*HSSPTESDLSS
Trigger: AGAGGAAAGATCAGATTCTGTTGGACTTGAATGTCAGCTATGTAGGTGATGTACAGATTGACGTGGAGGTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000026427.8