Pregenerated sensors for ESX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023443Ensembl transcript IDs: ENSMUST00000074698.3, ENSMUST00000113066.9, ENSMUST00000155283.2
Found 19 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | GACACCCACAGGGGGACTCATGGCGACTGGAACCATGTTTCTGAATaGCTGTGCCCGCCGAAGTCGTCTCCACTTGGCCCTTCTGTTCTG | + |
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Preference number: 5 (lower is better) Translates to: DTHRGTHGDWNHVSE*LCPPKSSPLGPSVL Trigger: CAGAACAGAAGGGCCAAGTGGAGACGACTTCGGCGGGCACAGGCATTCAGAAACATGGTTCCAGTCGCCATGAGTCCCCCTGTGGGTGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 90 bp | AGGTGGCAGAGGAGGTGGCCTAAATGGTGGAGGCATTCTGAATCCTaGAGGGGGCCTGGGTGGAAGAGGCATCATTTGAGGATGCATGGG | + |
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Preference number: 5 (lower is better) Translates to: RWQRRWPKWWRHSES*RGPGWKRHHLRMHG Trigger: CCCATGCATCCTCAAATGATGCCTCTTCCACCCAGGCCCCCTCCAGGATTCAGAATGCCTCCACCATTTAGGCCACCTCCTCTGCCACCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 90 bp | ATATTCCCTTGCTGCATTGGGTATGTGCGCATCAGGTGGTACAGGTaGCCAGGGAAAAGGTGGCAGAGGAGGTGGCCTAAATGGTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: IFPCCIGYVRIRWYR*PGKRWQRRWPKWWR Trigger: CCTCCACCATTTAGGCCACCTCCTCTGCCACCTTTTCCCTGGCCACCTGTACCACCTGATGCGCACATACCCAATGCAGCAAGGGAATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 90 bp | GAAGGGGTTATATTCCCTTGCTGCATTGGGTATGTGCGCATCAGGTaGTACAGGTGGCCAGGGAAAAGGTGGCAGAGGAGGTGGCCTAAA | + |
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Preference number: 5 (lower is better) Translates to: EGVIFPCCIGYVRIR*YRWPGKRWQRRWPK Trigger: TTTAGGCCACCTCCTCTGCCACCTTTTCCCTGGCCACCTGTACCACCTGATGCGCACATACCCAATGCAGCAAGGGAATATAACCCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 90 bp | ATAATGATCATCAAGATAGACACCCACAGGGGGACTCATGGCGACTaGAACCATGTTTCTGAATGCCTGTGCCCGCCGAAGTCGTCTCCA | + |
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Preference number: 5 (lower is better) Translates to: IMIIKIDTHRGTHGD*NHVSECLCPPKSSP Trigger: TGGAGACGACTTCGGCGGGCACAGGCATTCAGAAACATGGTTCCAGTCGCCATGAGTCCCCCTGTGGGTGTCTATCTTGATGATCATTAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS TCA 90 bp | TTCAGATTCCGCGTTTTCCTGGTAGTCTGCTCCCTCCAAAAGCGTTaGGCTCAAGCTAGGCTGTGGATCCTGAAGTGTTTCCTCCTTCAC | + |
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Preference number: 5 (lower is better) Translates to: FRFRVFLVVCSLQKR*AQARLWILKCFLLH Trigger: GTGAAGGAGGAAACACTTCAGGATCCACAGCCTAGCTTGAGCTCAACGCTTTTGGAGGGAGCAGACTACCAGGAAAACGCGGAATCTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074698.3 |
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| CDS CAA 90 bp | CTCCTCGGGCTGCTGCGGGGCCTGCAGCGGGTTTGCGGGCAGGGGTaGCGGCGAAGACTGAGCAACAGGCTGCATCAGAGGACGCATCAG | + |
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Preference number: 6 (lower is better) Translates to: LLGLLRGLQRVCGQG*RRRLSNRLHQRTHQ Trigger: CTGATGCGTCCTCTGATGCAGCCTGTTGCTCAGTCTTCGCCGCAACCCCTGCCCGCAAACCCGCTGCAGGCCCCGCAGCAGCCCGAGGAG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 ENSMUST00000155283.2 |
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| CDS TCA 72 bp | GGAAAAAGGCCTCCAGCTCCTGCAGTTGGATCGGGGTaGAGCAGATGCGGTAGCGGCGAGGCTTCGGCTCCT | + |
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Preference number: 6 (lower is better) Translates to: GKRPPAPAVGSG*SRCGSGEASAP Trigger: AGGAGCCGAAGCCTCGCCGCTACCGCATCTGCTTCACCCCGATCCAACTGCAGGAGCTGGAGGCCTTTTTCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 72 bp | TGGCCAGGGAAAAGGTGGCAGAGGAGGTGGCCTAAATaGTGGAGGCATTCTGAATCCTGGAGGGGGCCTGGG | + |
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Preference number: 6 (lower is better) Translates to: WPGKRWQRRWPK*WRHSESWRGPG Trigger: CCCAGGCCCCCTCCAGGATTCAGAATGCCTCCACCATTTAGGCCACCTCCTCTGCCACCTTTTCCCTGGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CAA 72 bp | GCGGTGCTTCTGCAACCGGCGCTGCTGCTTCTCCTCTaGAGGGTTCGAATCCCTCGGGTTCCTGGTAGTTTG | + |
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Preference number: 6 (lower is better) Translates to: AVLLQPALLLLL*RVRIPRVPGSL Trigger: CAAACTACCAGGAACCCGAGGGATTCGAACCCTCAAGAGGAGAAGCAGCAGCGCCGGTTGCAGAAGCACCGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 ENSMUST00000155283.2 |
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| CDS CCA 72 bp | TGGTGGAGGCATTCTGAATCCTGGAGGGGGCCTGGGTaGAAGAGGCATCATTTGAGGATGCATGGGACGAGG | + |
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Preference number: 6 (lower is better) Translates to: WWRHSESWRGPG*KRHHLRMHGTR Trigger: CCTCGTCCCATGCATCCTCAAATGATGCCTCTTCCACCCAGGCCCCCTCCAGGATTCAGAATGCCTCCACCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CAA 72 bp | GAATCCTGGAGGGGGCCTGGGTGGAAGAGGCATCATTaGAGGATGCATGGGACGAGGCACCATTGGGTAGCA | + |
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Preference number: 6 (lower is better) Translates to: ESWRGPGWKRHH*RMHGTRHHWVA Trigger: TGCTACCCAATGGTGCCTCGTCCCATGCATCCTCAAATGATGCCTCTTCCACCCAGGCCCCCTCCAGGATTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 72 bp | TGGTACAGGTGGCCAGGGAAAAGGTGGCAGAGGAGGTaGCCTAAATGGTGGAGGCATTCTGAATCCTGGAGG | + |
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Preference number: 6 (lower is better) Translates to: WYRWPGKRWQRR*PKWWRHSESWR Trigger: CCTCCAGGATTCAGAATGCCTCCACCATTTAGGCCACCTCCTCTGCCACCTTTTCCCTGGCCACCTGTACCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS CCA 72 bp | ATCAAGATAGACACCCACAGGGGGACTCATGGCGACTaGAACCATGTTTCTGAATGCCTGTGCCCGCCGAAG | + |
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Preference number: 6 (lower is better) Translates to: IKIDTHRGTHGD*NHVSECLCPPK Trigger: CTTCGGCGGGCACAGGCATTCAGAAACATGGTTCCAGTCGCCATGAGTCCCCCTGTGGGTGTCTATCTTGAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS GCA 72 bp | GGGAAGGGGTTATATTCCCTTGCTGCATTGGGTATGTaGGCATCAGGTGGTACAGGTGGCCAGGGAAAAGGT | + |
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Preference number: 6 (lower is better) Translates to: GKGLYSLAALGM*ASGGTGGQGKG Trigger: ACCTTTTCCCTGGCCACCTGTACCACCTGATGCGCACATACCCAATGCAGCAAGGGAATATAACCCCTTCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS TCA 72 bp | CGCGTTTTCCTGGTAGTCTGCTCCCTCCAAAAGCGTTaGGCTCAAGCTAGGCTGTGGATCCTGAAGTGTTTC | + |
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Preference number: 6 (lower is better) Translates to: RVFLVVCSLQKR*AQARLWILKCF Trigger: GAAACACTTCAGGATCCACAGCCTAGCTTGAGCTCAACGCTTTTGGAGGGAGCAGACTACCAGGAAAACGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074698.3 |
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| CDS CAA 90 bp | CCACTTCTTCCTCCTTCGGGCTGGCTCCAAAGTCGGAGTAGAAAGTaGTTTCAGATTCCGCGTTTTCCTGGTAGTCTGCTCCCTCCAAAA | + |
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Preference number: 6 (lower is better) Translates to: PLLPPSGWLQSRSRK*FQIPRFPGSLLPPK Trigger: TTTTGGAGGGAGCAGACTACCAGGAAAACGCGGAATCTGAAACAACTTTCTACTCCGACTTTGGAGCCAGCCCGAAGGAGGAAGAAGTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074698.3 |
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| CDS CCA 72 bp | AGGCATCATTTGAGGATGCATGGGACGAGGCACCATTaGGTAGCACTTCCAAATAACCTCCACAATAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: RHHLRMHGTRHH*VALPNNLHNRD Trigger: ATCCCTATTGTGGAGGTTATTTGGAAGTGCTACCCAATGGTGCCTCGTCCCATGCATCCTCAAATGATGCCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074698.3 ENSMUST00000113066.9 |
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| CDS TCA 72 bp | GTTCCTGGTAGTTTGCTTCTTCCAGAAACATGGAGTTaGACAGAGAGTTCTCCATCTCCACTTCTTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: VPGSLLLPETWS*TESSPSPLLPP Trigger: AGGAGGAAGAAGTGGAGATGGAGAACTCTCTGTTCAACTCCATGTTTCTGGAAGAAGCAAACTACCAGGAAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074698.3 |
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