RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ESRRG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026610

Ensembl transcript IDs: ENSMUST00000027906.13, ENSMUST00000110938.2, ENSMUST00000110939.8, ENSMUST00000127489.8

Found 268 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTCGTGGATaGGACCACTCGGTGTCACGGCAGGTATCATCTAATCCTTGGTGT +
Preference number: 1 (lower is better)
Translates to: GANSTDRDPMCSARG*DHSVSRQVSSNPWC
Trigger: ACACCAAGGATTAGATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 90 bp ATGGCTGTAACTGATCTAGATGAGAAAGCAAGGAGAAGCAGCCAATaGCGCCACTTAGGTTGTCTGATCGAAGGCTGCCCGGTAGAATCT +
Preference number: 1 (lower is better)
Translates to: MAVTDLDEKARRSSQ*RHLGCLIEGCPVES
Trigger: AGATTCTACCGGGCAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTCTCATCTAGATCAGTTACAGCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 90 bp TGTACCTCCTTCCTTAAATGTGCCTCTGTCTCACCTGATCACTTGTaGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTG +
Preference number: 1 (lower is better)
Translates to: CTSFLKCASVSPDHL*ALASEAQILLCDSV
Trigger: CACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACATTTAAGGAAGGAGGTACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 90 bp AACACTGGTCCATTGGTAAAGCGTTCTACGGAGGTTACTGGTTTCTaGTTATTCGGCGACTGTAGGTTTCGGGAGGGGACATTTGATTTC +
Preference number: 1 (lower is better)
Translates to: NTGPLVKRSTEVTGF*LFGDCRFREGTFDF
Trigger: GAAATCAAATGTCCCCTCCCGAAACCTACAGTCGCCGAATAACCAGAAACCAGTAACCTCCGTAGAACGCTTTACCAATGGACCAGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 90 bp TTGGTCAGGCGTCTGCTGTCTTTGATGGTTGGTTGGTTTGAATTCTaGCACTTAGCCTTTATTGCCTCTGAAATGGTATTGGCTCACAGC +
Preference number: 1 (lower is better)
Translates to: LVRRLLSLMVGWFEF*HLAFIASEMVLAHS
Trigger: GCTGTGAGCCAATACCATTTCAGAGGCAATAAAGGCTAAGTGCCAGAATTCAAACCAACCAACCATCAAAGACAGCAGACGCCTGACCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp TGTCTGATCGAAGGCTGCCCGGTAGAATCTAATACTGCACTAAGTTaGTCCGTTTGCGTTGCAATGTACTTTAGGTACGGTTCTCTCTTT +
Preference number: 1 (lower is better)
Translates to: CLIEGCPVESNTALS*SVCVAMYFRYGSLF
Trigger: AAAGAGAGAACCGTACCTAAAGTACATTGCAACGCAAACGGATCAACTTAGTGCAGTATTAGATTCTACCGGGCAGCCTTCGATCAGACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 90 bp TTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATaGTTCATGACAAGTTCACTGGCATCCATAGTATGGATCTCTGTC +
Preference number: 1 (lower is better)
Translates to: LGTVLSLIPYSLGMS*FMTSSLASIVWISV
Trigger: GACAGAGATCCATACTATGGATGCCAGTGAACTTGTCATGAACCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp TGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTaGAACGGTGGGTACATACATTGTCTATATTCCATTTGTGTATAT +
Preference number: 1 (lower is better)
Translates to: CGLWLLKLRFFSATQ*NGGYIHCLYSICVY
Trigger: ATATACACAAATGGAATATAGACAATGTATGTACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp AGAGATGCAAGAGGTAAAAGAAATGTTCCATACAATCAGAGGTATTaGCTATGTACGCAGAGTGGGAGGAGATGTGAGAAAGCGAAGAGA +
Preference number: 1 (lower is better)
Translates to: RDARGKRNVPYNQRY*LCTQSGRRCEKAKR
Trigger: TCTCTTCGCTTTCTCACATCTCCTCCCACTCTGCGTACATAGTCAATACCTCTGATTGTATGGAACATTTCTTTTACCTCTTGCATCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp CACACCACAAGAATCCAAACACCACGAGAACAAGACGACAGTTTCTaGATGCAACATAAAGTTCAGAAAAGCGCAGCAAACATGGAACAT +
Preference number: 1 (lower is better)
Translates to: HTTRIQTPREQDDSF*MQHKVQKSAANMEH
Trigger: ATGTTCCATGTTTGCTGCGCTTTTCTGAACTTTATGTTGCATTCAGAAACTGTCGTCTTGTTCTCGTGGTGTTTGGATTCTTGTGGTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 90 bp TGTAAGAAACTGATGTTTGGGACCAGACTGGCACACAACATAAATTaGATCCGTGGTAATATGCACCTTCCCTTCAACTATTGCTTGAGT +
Preference number: 1 (lower is better)
Translates to: CKKLMFGTRLAHNIN*IRGNMHLPFNYCLS
Trigger: ACTCAAGCAATAGTTGAAGGGAAGGTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACATCAGTTTCTTACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp GAGGGGACATTTGATTTCTTCATTAGATTACACCTGGTTACAGTCTaGAACCTGACTGACCTTCGTGCTGTGACCATACTTGTTGAAAAA +
Preference number: 1 (lower is better)
Translates to: EGTFDFFIRLHLVTV*NLTDLRAVTILVEK
Trigger: TTTTTCAACAAGTATGGTCACAGCACGAAGGTCAGTCAGGTTTCAGACTGTAACCAGGTGTAATCTAATGAAGAAATCAAATGTCCCCTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 90 bp CCACAAGAATCCAAACACCACGAGAACAAGACGACAGTTTCTGAATaGAACATAAAGTTCAGAAAAGCGCAGCAAACATGGAACATTGAA +
Preference number: 1 (lower is better)
Translates to: PQESKHHENKTTVSE*NIKFRKAQQTWNIE
Trigger: TTCAATGTTCCATGTTTGCTGCGCTTTTCTGAACTTTATGTTGCATTCAGAAACTGTCGTCTTGTTCTCGTGGTGTTTGGATTCTTGTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 90 bp AAACTTTGCTCGAGCAAGGTACAAATGGTATTTACCCTAAACCTGTaGGTTTCCTTTAGATCCACACTTGAAGCTGTTGTTGTTTTCACC +
Preference number: 1 (lower is better)
Translates to: KLCSSKVQMVFTLNL*VSFRSTLEAVVVFT
Trigger: GGTGAAAACAACAACAGCTTCAAGTGTGGATCTAAAGGAAACGCACAGGTTTAGGGTAAATACCATTTGTACCTTGCTCGAGCAAAGTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp ACCAAAAAGGTTTGCAACAACACAGAGCGAGTTAATAACAACATCTaGGAGATGATCAGGTGGAAGCCTTATATACAGCATTTAAAAATT +
Preference number: 1 (lower is better)
Translates to: TKKVCNNTERVNNNI*EMIRWKPYIQHLKI
Trigger: AATTTTTAAATGCTGTATATAAGGCTTCCACCTGATCATCTCTCAGATGTTGTTATTAACTCGCTCTGTGTTGTTGCAAACCTTTTTGGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 90 bp CTAATGATGATTTACCTAGAGTCACACTACAGTCACTTTCTCTACTaGGAACCACAATCTACGATATATTCCCATATAGCTAATGATAGA +
Preference number: 1 (lower is better)
Translates to: LMMIYLESHYSHFLY*EPQSTIYSHIANDR
Trigger: TCTATCATTAGCTATATGGGAATATATCGTAGATTGTGGTTCTCAGTAGAGAAAGTGACTGTAGTGTGACTCTAGGTAAATCATCATTAG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 90 bp ACAGTTTCTGAATGCAACATAAAGTTCAGAAAAGCGCAGCAAACATaGAACATTGAAGCTGAACTATTCTTTTGTTTGTTAGGAGTACAA +
Preference number: 1 (lower is better)
Translates to: TVSECNIKFRKAQQT*NIEAELFFCLLGVQ
Trigger: TTGTACTCCTAACAAACAAAAGAATAGTTCAGCTTCAATGTTCCATGTTTGCTGCGCTTTTCTGAACTTTATGTTGCATTCAGAAACTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATCTTCCCTTTTCAACGTaGAGGATGGGAGGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHLPFST*RMGGPR
Trigger: CCTGGGCCCTCCCATCCTGCACGTTGAAAAGGGAAG...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGCTTCCCTTTTCAACGTaGAGGATGGGAGGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLLPFST*RMGGPR
Trigger: CCTGGGCCCTCCCATCCTGCACGTTGAAAAGGGAAG...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCCCTTTTCAACGTaGAGGATGGGAGGGCCCAGG +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQILPFST*RMGGPR
Trigger: CCTGGGCCCTCCCATCCTGCACGTTGAAAAGGGAAG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGTGGCCAGAGGATCGTaGGATAAAGTAGAGGAAACC +
Preference number: 2 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHVARGS*DKVEET
Trigger: GGTTTCCTCTACTTTATCCCACGATCCTCTGGCCAC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGGCTGCATCGTACTGTaGCTGCTAAAATATCAGTGC +
Preference number: 2 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHGCIVL*LLKYQC
Trigger: GCACTGATATTTTAGCAGCCACAGTACGATGCAGCC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGAGGAATGCAGGGATGTaGCCAGAGGATCGTGGGATA +
Preference number: 2 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLRNAGM*PEDRGI
Trigger: TATCCCACGATCCTCTGGCCACATCCCTGCATTCCT...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 90 bp GGCTCACAGCTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTaGTTCCTAACCACGAGGGCAGCTAGAAACCGTATGGCGACTGTC +
Preference number: 2 (lower is better)
Translates to: GSQLLLRQSLYTGSI*FLTTRAARNRMATV
Trigger: GACAGTCGCCATACGGTTTCTAGCTGCCCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAGCTGTGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGGGGAGGAGGGAAAATaGACTATTAGTGAAAGAAGC +
Preference number: 2 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHGEEGK*TISERS
Trigger: GCTTCTTTCACTAATAGTTCATTTTCCCTCCTCCCC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAAGGAATGCAGGGATGTaGCCAGAGGATCGTGGGATA +
Preference number: 2 (lower is better)
Translates to: ALASEAQILLCDSVKRWVRNAGM*PEDRGI
Trigger: TATCCCACGATCCTCTGGCCACATCCCTGCATTCCT...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTTGGATCTCTGTCCTTTaGCAGGGCTGGCTTCCATCT +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQIWISVL*QGWLPS
Trigger: AGATGGAAGCCAGCCCTGCCAAAGGACAGAGATCCA...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGGGATGTCATGGTTCATaGCAAGTTCACTGGCATCCA +
Preference number: 2 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLGCHGS*QVHWHP
Trigger: TGGATGCCAGTGAACTTGTCATGAACCATGACATCC...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTACACCTGGTTACAGTCTaGAACCTGACTGACCTTCGT +
Preference number: 2 (lower is better)
Translates to: ALASEAQILLCDSVKRWVHLVTV*NLTDLR
Trigger: ACGAAGGTCAGTCAGGTTTCAGACTGTAACCAGGTG...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTGTGGCCAGAGGATCGTaGGATAAAGTAGAGGAAACC +
Preference number: 2 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAVARGS*DKVEET
Trigger: GGTTTCCTCTACTTTATCCCACGATCCTCTGGCCAC...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGGAAAGCGAAGAGAGGTaGGAGCAAGGCAAGAGGAGA +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRESEER*EQGKRR
Trigger: TCTCCTCTTGCCTTGCTCTCACCTCTCTTCGCTTTC...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGTACGGTTCTCTCTTTaGTTCCTTACTCACTGGGGA +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQIVRFSL*FLTHWG
Trigger: TCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTAC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTGTACGGTTCTCTCTTTaGTTCCTTACTCACTGGGGA +
Preference number: 2 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAVRFSL*FLTHWG
Trigger: TCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTAC...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAGCTCACAGCTCCTTCTaGGACAGAGTTTGTATACAG +
Preference number: 2 (lower is better)
Translates to: ALASEAQILLCDSVKRWVAHSSF*DRVCIQ
Trigger: CTGTATACAAACTCTGTCTCAGAAGGAGCTGTGAGC...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGCTCACAGCTCCTTCTaGGACAGAGTTTGTATACAG +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQIAHSSF*DRVCIQ
Trigger: CTGTATACAAACTCTGTCTCAGAAGGAGCTGTGAGC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGGCTGCATCGTACTGTaGCTGCTAAAATATCAGTGC +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQIGCIVL*LLKYQC
Trigger: GCACTGATATTTTAGCAGCCACAGTACGATGCAGCC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGAGGAATGCAGGGATGTaGCCAGAGGATCGTGGGATA +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRRNAGM*PEDRGI
Trigger: TATCCCACGATCCTCTGGCCACATCCCTGCATTCCT...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGCTGGCATCCATAGTATaGATCTCTGTCCTTTGGCAG +
Preference number: 2 (lower is better)
Translates to: SHLITCGLWLLKLRFFSALASIV*ISVLWQ
Trigger: CTGCCAAAGGACAGAGATCCATACTATGGATGCCAG...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCCTCTGAAATGGTATTaGCTCACAGCTCCTTCTGAG +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQIPLKWY*LTAPSE
Trigger: CTCAGAAGGAGCTGTGAGCCAATACCATTTCAGAGG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 90 bp CATTGTACCTCCTTCCTTAAATGTGCCTCTGTCTCACCTGATCACTaGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCA +
Preference number: 2 (lower is better)
Translates to: HCTSFLKCASVSPDH*WALASEAQILLCDS
Trigger: TGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACATTTAAGGAAGGAGGTACAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGGGATGTCATGGTTCATaGCAAGTTCACTGGCATCCA +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRGCHGS*QVHWHP
Trigger: TGGATGCCAGTGAACTTGTCATGAACCATGACATCC...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTGCATCCGTGGTAATATaGACCTTCCCTTCAACTATT +
Preference number: 2 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAASVVI*TFPSTI
Trigger: AATAGTTGAAGGGAAGGTGCATATTACCACGGATGC...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAGGATCCCATGTGCAGTaGTCGTGGATGGGACCACTC +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQGSHVQ*SWMGPL
Trigger: GAGTGGTCCCATCCACGAGCACTGCACATGGGATCC...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGGGCTGCATCGTACTGTaGCTGCTAAAATATCAGTGC +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRGCIVL*LLKYQC
Trigger: GCACTGATATTTTAGCAGCCACAGTACGATGCAGCC...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTTATTGCCTCTGAAATaGTATTGGCTCACAGCTCCT +
Preference number: 2 (lower is better)
Translates to: SHLITCGLWLLKLRFFSALLPLK*YWLTAP
Trigger: AGGAGCTGTGAGCCAATACCATTTCAGAGGCAATAA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 90 bp AAGACTGTCCACAGAATACAGAGAGCAGCTACTAACACTGGTCCATaGGTAAAGCGTTCTACGGAGGTTACTGGTTTCTGGTTATTCGGC +
Preference number: 2 (lower is better)
Translates to: KTVHRIQRAATNTGP*VKRSTEVTGFWLFG
Trigger: GCCGAATAACCAGAAACCAGTAACCTCCGTAGAACGCTTTACCAATGGACCAGTGTTAGTAGCTGCTCTCTGTATTCTGTGGACAGTCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTGTGACCATACTTGTTaGAAAAGCACATCTATTGGC +
Preference number: 2 (lower is better)
Translates to: SHLITCGLWLLKLRFFSACDHTC*KSTSIG
Trigger: GCCAATAGATGTGCTTTTTCAACAAGTATGGTCACA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGCAAGACGACAGTTTCTaGATGCAACATAAAGTTCAG +
Preference number: 2 (lower is better)
Translates to: SHLITCGLWLLKLRFFSAQDDSF*MQHKVQ
Trigger: CTGAACTTTATGTTGCATTCAGAAACTGTCGTCTTG...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTACTGTAGTCTCCTaGGGAAGTATACATCCAATA +
Preference number: 2 (lower is better)
Translates to: SHLITCGLWLLKLRFFSATTVVS*GSIHPI
Trigger: TATTGGATGTATACTTCCTCAGGAGACTACAGTAGT...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTAGTCACTTTCTCTACTaGGAACCACAATCTACGATA +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQISHFLY*EPQSTI
Trigger: TATCGTAGATTGTGGTTCTCAGTAGAGAAAGTGACT...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGCACACAACATAAATTaGATCCGTGGTAATATGCAC +
Preference number: 2 (lower is better)
Translates to: CASVSPDHLWALASEAQIAHNIN*IRGNMH
Trigger: GTGCATATTACCACGGATGCAATTTATGTTGTGTGC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAGAAAGCGAAGAGAGGTaGGAGCAAGGCAAGAGGAGA +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQESEER*EQGKRR
Trigger: TCTCCTCTTGCCTTGCTCTCACCTCTCTTCGCTTTC...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGAATCCTTGGTGTCAGTaGACATTTAGGCAAACTGGA +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRNPWCQ*TFRQTG
Trigger: TCCAGTTTGCCTAAATGTTCACTGACACCAAGGATT...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATATTCCTAGCACAGGGCTaGGACACCCTCAGTCCAAGG +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIFLAQG*DTLSPR
Trigger: CCTTGGACTGAGGGTGTCTCAGCCCTGTGCTAGGAA...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR GCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGGCATCCGTGGTAATATaGACCTTCCCTTCAACTATT +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRASVVI*TFPSTI
Trigger: AATAGTTGAAGGGAAGGTGCATATTACCACGGATGC...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAATGGATCTCTGTCCTTTaGCAGGGCTGGCTTCCATCT +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQWISVL*QGWLPS
Trigger: AGATGGAAGCCAGCCCTGCCAAAGGACAGAGATCCA...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACCTGGCATCCATAGTATaGATCTCTGTCCTTTGGCAG +
Preference number: 2 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHLASIV*ISVLWQ
Trigger: CTGCCAAAGGACAGAGATCCATACTATGGATGCCAG...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGGTGAATCGACTCCTATaGATCAGGACTTTAGAATTT +
Preference number: 2 (lower is better)
Translates to: SHLITCGLWLLKLRFFSAVNRLL*IRTLEF
Trigger: AAATTCTAAAGTCCTGATCCATAGGAGTCGATTCAC...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 90 bp TCAGTCCAAGGTATTTTGCTTAACGCACACAAAGTAGCAATAGTTTaGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAACACAGAGCG +
Preference number: 2 (lower is better)
Translates to: SVQGILLNAHKVAIV*EASPHQKGLQQHRA
Trigger: CGCTCTGTGTTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTGTGCGTTAAGCAAAATACCTTGGACTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAGCTCATGTAAGAAACTaGTGTTTGGGACCAGACTGG +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQAHVRN*CLGPDW
Trigger: CCAGTCTGGTCCCAAACATCAGTTTCTTACATGAGC...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGCTTCCCTTCAACTATTaGTTGAGTAAGTTAAATCCC +
Preference number: 2 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRLPFNY*LSKLNP
Trigger: GGGATTTAACTTACTCAAGCAATAGTTGAAGGGAAG...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAACTGGCATCCATAGTATaGATCTCTGTCCTTTGGCAG +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQLASIV*ISVLWQ
Trigger: CTGCCAAAGGACAGAGATCCATACTATGGATGCCAG...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGGAAAGCGAAGAGAGGTaGGAGCAAGGCAAGAGGAGA +
Preference number: 2 (lower is better)
Translates to: TKELRNQMAVTDLDEKARESEER*EQGKRR
Trigger: TCTCCTCTTGCCTTGCTCTCACCTCTCTTCGCTTTC...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAGATGGTTGGTTGGTTTaGATTCTGGCACTTAGCCTT +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQDGWLV*ILALSL
Trigger: AAGGCTAAGTGCCAGAATTCAAACCAACCAACCATC...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGTGGATCTCTGTCCTTTaGCAGGGCTGGCTTCCATCT +
Preference number: 2 (lower is better)
Translates to: TKELRNQMAVTDLDEKARWISVL*QGWLPS
Trigger: AGATGGAAGCCAGCCCTGCCAAAGGACAGAGATCCA...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGTACGGTTCTCTCTTTaGTTCCTTACTCACTGGGGA +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIVRFSL*FLTHWG
Trigger: TCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTAC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAAATCCTTGGTGTCAGTaGACATTTAGGCAAACTGGA +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQNPWCQ*TFRQTG
Trigger: TCCAGTTTGCCTAAATGTTCACTGACACCAAGGATT...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAACAACATCTGAGAGATaGTCAGGTGGAAGCCTTATA +
Preference number: 2 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQTTSER*SGGSLI
Trigger: TATAAGGCTTCCACCTGATCATCTCTCAGATGTTGT...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR GCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACCTTCCCTTCAACTATTaGTTGAGTAAGTTAAATCCC +
Preference number: 2 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHLPFNY*LSKLNP
Trigger: GGGATTTAACTTACTCAAGCAATAGTTGAAGGGAAG...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGGGGAGGAGGGAAAATaGACTATTAGTGAAAGAAGC +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIGEEGK*TISERS
Trigger: GCTTCTTTCACTAATAGTTCATTTTCCCTCCTCCCC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAAGCCTTTATTGCCTCTaGAATGGTATTGGCTCACAG +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNISLYCL*NGIGSQ
Trigger: CTGTGAGCCAATACCATTTCAGAGGCAATAAAGGCT...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAACAACATCTGAGAGATaGTCAGGTGGAAGCCTTATA +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNITTSER*SGGSLI
Trigger: TATAAGGCTTCCACCTGATCATCTCTCAGATGTTGT...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAATTGCTTTACAGATGTaGTGCCCACCTACAGCTATA +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIIALQM*CPPTAI
Trigger: TATAGCTGTAGGTGGGCATCACATCTGTAAAGCAAT...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATATGTGACCATACTTGTTaGAAAAGCACATCTATTGGC +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNICDHTC*KSTSIG
Trigger: GCCAATAGATGTGCTTTTTCAACAAGTATGGTCACA...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAAGTCACTTTCTCTACTaGGAACCACAATCTACGATA +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNISHFLY*EPQSTI
Trigger: TATCGTAGATTGTGGTTCTCAGTAGAGAAAGTGACT...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR-3UTR GCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGCACACAACATAAATTaGATCCGTGGTAATATGCAC +
Preference number: 2 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIAHNIN*IRGNMH
Trigger: GTGCATATTACCACGGATGCAATTTATGTTGTGTGC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR CAA 90 bp ATAAATTGCATCCGTGGTAATATGCACCTTCCCTTCAACTATTGCTaGAGTAAGTTAAATCCCCATATTAATAAATGGCTGAAAAGTGGT +
Preference number: 2 (lower is better)
Translates to: INCIRGNMHLPFNYC*SKLNPHINKWLKSG
Trigger: ACCACTTTTCAGCCATTTATTAATATGGGGATTTAACTTACTCAAGCAATAGTTGAAGGGAAGGTGCATATTACCACGGATGCAATTTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 90 bp ACTTATCACAGCTATCAATTTCAAGTTATTGACCATCCGAATGAATaGCTAATGATGATTTACCTAGAGTCACACTACAGTCACTTTCTC +
Preference number: 2 (lower is better)
Translates to: TYHSYQFQVIDHPNE*LMMIYLESHYSHFL
Trigger: GAGAAAGTGACTGTAGTGTGACTCTAGGTAAATCATCATTAGCAATTCATTCGGATGGTCAATAACTTGAAATTGATAGCTGTGATAAGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp TCTACAGATAGGGATCCCATGTGCAGTGCTCGTGGATaGGACCACTCGGTGTCACGGCAGGTATCATCTAAT +
Preference number: 3 (lower is better)
Translates to: STDRDPMCSARG*DHSVSRQVSSN
Trigger: ATTAGATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGATCCCTATCTGTAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGATGCCGCCACTTAGGTaGTCTGATCGAAGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRMPPLR*SDRRLP
Trigger: GGGCAGCCTTCGATCAGACAACCTAAGTGGCGGCAT...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTGGTACGGTTCTCTCTTaGATTCCTTACTCACTGGGG +
Preference number: 3 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAGTVLS*IPYSLG
Trigger: CCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACC...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGGTACGGTTCTCTCTTaGATTCCTTACTCACTGGGG +
Preference number: 3 (lower is better)
Translates to: CASVSPDHLWALASEAQIGTVLS*IPYSLG
Trigger: CCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATTTCATTAGTGTTCAATaGTTCAAAGCCAGCACGAGG +
Preference number: 3 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHFISVQ*FKASTR
Trigger: CCTCGTGCTGGCTTTGAACAATTGAACACTAATGAA...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp CCATTGGTAAAGCGTTCTACGGAGGTTACTGGTTTCTaGTTATTCGGCGACTGTAGGTTTCGGGAGGGGACA +
Preference number: 3 (lower is better)
Translates to: PLVKRSTEVTGF*LFGDCRFREGT
Trigger: TGTCCCCTCCCGAAACCTACAGTCGCCGAATAACCAGAAACCAGTAACCTCCGTAGAACGCTTTACCAATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp AATGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTaGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAG +
Preference number: 3 (lower is better)
Translates to: NVPLSHLITCGL*LLKLRFFSATQ
Trigger: CTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACATGCCGCCACTTAGGTaGTCTGATCGAAGGCTGCCC +
Preference number: 3 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHMPPLR*SDRRLP
Trigger: GGGCAGCCTTCGATCAGACAACCTAAGTGGCGGCAT...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTACTAACACTGGTCCATaGGTAAAGCGTTCTACGGAG +
Preference number: 3 (lower is better)
Translates to: CASVSPDHLWALASEAQITNTGP*VKRSTE
Trigger: CTCCGTAGAACGCTTTACCAATGGACCAGTGTTAGT...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTGAGACAGAGTTaGTATACAGGCAGCATCTTG +
Preference number: 3 (lower is better)
Translates to: CASVSPDHLWALASEAQILLRQS*YTGSIL
Trigger: CAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 72 bp GAAACCTATCAGGAAGATGTAGCGGAATCCGCAGGCTaGATCGTACTGTGGCTGCTAAAATATCAGTGCAGT +
Preference number: 3 (lower is better)
Translates to: ETYQEDVAESAG*IVLWLLKYQCS
Trigger: ACTGCACTGATATTTTAGCAGCCACAGTACGATGCAGCCTGCGGATTCCGCTACATCTTCCTGATAGGTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 72 bp TTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTaGGACTCAGTGAAACGGTGGGTACATACATTGTCT +
Preference number: 3 (lower is better)
Translates to: LWALASEAQILL*DSVKRWVHTLS
Trigger: AGACAATGTATGTACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp TTCCTTAAATGTGCCTCTGTCTCACCTGATCACTTGTaGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGC +
Preference number: 3 (lower is better)
Translates to: FLKCASVSPDHL*ALASEAQILLC
Trigger: GCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACATTTAAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTTTCATTAGTGTTCAATaGTTCAAAGCCAGCACGAGG +
Preference number: 3 (lower is better)
Translates to: CASVSPDHLWALASEAQIFISVQ*FKASTR
Trigger: CCTCGTGCTGGCTTTGAACAATTGAACACTAATGAA...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAAAAGTAGCAATAGTTTaGGAAGCAAGTCCGCACCAA +
Preference number: 3 (lower is better)
Translates to: ALASEAQILLCDSVKRWVKVAIV*EASPHQ
Trigger: TTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTT...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTCTTCGACATCATTCTaGGGTTTATCTTCCCTTTTC +
Preference number: 3 (lower is better)
Translates to: SHLITCGLWLLKLRFFSASSTSF*GLSSLF
Trigger: GAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTTCCTTCAGGGTTCATTaGTCCTTCATTAGTGTTCAA +
Preference number: 3 (lower is better)
Translates to: CASVSPDHLWALASEAQISFRVH*SFISVQ
Trigger: TTGAACACTAATGAAGGACAAATGAACCCTGAAGGA...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTTCGGGAGGGGACATTaGATTTCTTCATTAGATTAC +
Preference number: 3 (lower is better)
Translates to: SHLITCGLWLLKLRFFSAFGRGH*ISSLDY
Trigger: GTAATCTAATGAAGAAATCAAATGTCCCCTCCCGAA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTCAGTCCAAGGTATTTaGCTTAACGCACACAAAGTA +
Preference number: 3 (lower is better)
Translates to: SHLITCGLWLLKLRFFSASVQGI*LNAHKV
Trigger: TACTTTGTGTGCGTTAAGCAAAATACCTTGGACTGA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGATACAATCAGAGGTATaGACTATGTACGCAGAGTGG +
Preference number: 3 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRIQSEV*TMYAEW
Trigger: CCACTCTGCGTACATAGTCAATACCTCTGATTGTAT...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 72 bp GAAGGCTGCCCGGTAGAATCTAATACTGCACTAAGTTaGTCCGTTTGCGTTGCAATGTACTTTAGGTACGGT +
Preference number: 3 (lower is better)
Translates to: EGCPVESNTALS*SVCVAMYFRYG
Trigger: ACCGTACCTAAAGTACATTGCAACGCAAACGGATCAACTTAGTGCAGTATTAGATTCTACCGGGCAGCCTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 72 bp GTGTCACGGCAGGTATCATCTAATCCTTGGTGTCAGTaGACATTTAGGCAAACTGGAGCTCATGTAAGAAAC +
Preference number: 3 (lower is better)
Translates to: VSRQVSSNPWCQ*TFRQTGAHVRN
Trigger: GTTTCTTACATGAGCTCCAGTTTGCCTAAATGTTCACTGACACCAAGGATTAGATGATACCTGCCGTGACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 72 bp CTGATGTTTGGGACCAGACTGGCACACAACATAAATTaGATCCGTGGTAATATGCACCTTCCCTTCAACTAT +
Preference number: 3 (lower is better)
Translates to: LMFGTRLAHNIN*IRGNMHLPFNY
Trigger: ATAGTTGAAGGGAAGGTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACATCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp GTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATaGTTCATGACAAGTTCACTGGCATCCATAGTATGG +
Preference number: 3 (lower is better)
Translates to: VLSLIPYSLGMS*FMTSSLASIVW
Trigger: CCATACTATGGATGCCAGTGAACTTGTCATGAACCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTATCTTCGACATCATTCTaGGGTTTATCTTCCCTTTTC +
Preference number: 3 (lower is better)
Translates to: DVARGSWDKVEETYQEDVSSTSF*GLSSLF
Trigger: GAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGA...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAAGGCGTCTGCTGTCTTaGATGGTTGGTTGGTTTGAA +
Preference number: 3 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQRRLLS*MVGWFE
Trigger: TTCAAACCAACCAACCATCAAAGACAGCAGACGCCT...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 72 bp TGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTaGAACGGTGGGTACATACATTGTCTATATTCCATT +
Preference number: 3 (lower is better)
Translates to: WLLKLRFFSATQ*NGGYIHCLYSI
Trigger: AATGGAATATAGACAATGTATGTACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp CGTCTGCTGTCTTTGATGGTTGGTTGGTTTGAATTCTaGCACTTAGCCTTTATTGCCTCTGAAATGGTATTG +
Preference number: 3 (lower is better)
Translates to: RLLSLMVGWFEF*HLAFIASEMVL
Trigger: CAATACCATTTCAGAGGCAATAAAGGCTAAGTGCCAGAATTCAAACCAACCAACCATCAAAGACAGCAGACG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGTCTTCGACATCATTCTaGGGTTTATCTTCCCTTTTC +
Preference number: 3 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWSSTSF*GLSSLF
Trigger: GAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGA...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 72 bp AATTGCATGGCTAAAACATACACCTTGGTATCTTCCTaGCAGCTGGCATTAACTAAACGGTCTTGCTGGAAA +
Preference number: 3 (lower is better)
Translates to: NCMAKTYTLVSS*QLALTKRSCWK
Trigger: TTTCCAGCAAGACCGTTTAGTTAATGCCAGCTGTCAGGAAGATACCAAGGTGTATGTTTTAGCCATGCAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR GCA 72 bp TCGAGCAAGGTACAAATGGTATTTACCCTAAACCTGTaGGTTTCCTTTAGATCCACACTTGAAGCTGTTGTT +
Preference number: 3 (lower is better)
Translates to: SSKVQMVFTLNL*VSFRSTLEAVV
Trigger: AACAACAGCTTCAAGTGTGGATCTAAAGGAAACGCACAGGTTTAGGGTAAATACCATTTGTACCTTGCTCGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAATACAATCAGAGGTATaGACTATGTACGCAGAGTGG +
Preference number: 3 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQIQSEV*TMYAEW
Trigger: CCACTCTGCGTACATAGTCAATACCTCTGATTGTAT...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 72 bp AGAGGTAAAAGAAATGTTCCATACAATCAGAGGTATTaGCTATGTACGCAGAGTGGGAGGAGATGTGAGAAA +
Preference number: 3 (lower is better)
Translates to: RGKRNVPYNQRY*LCTQSGRRCEK
Trigger: TTTCTCACATCTCCTCCCACTCTGCGTACATAGTCAATACCTCTGATTGTATGGAACATTTCTTTTACCTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR TCA 72 bp GTTTGCAACAACACAGAGCGAGTTAATAACAACATCTaGGAGATGATCAGGTGGAAGCCTTATATACAGCAT +
Preference number: 3 (lower is better)
Translates to: VCNNTERVNNNI*EMIRWKPYIQH
Trigger: ATGCTGTATATAAGGCTTCCACCTGATCATCTCTCAGATGTTGTTATTAACTCGCTCTGTGTTGTTGCAAAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CCA 72 bp GAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTaGGTACATACATTGTCTATATTCCATTTGTGTATA +
Preference number: 3 (lower is better)
Translates to: EAQILLCDSVKR*VHTLSIFHLCI
Trigger: TATACACAAATGGAATATAGACAATGTATGTACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR-3UTR CAA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATATTCGGGAGGGGACATTaGATTTCTTCATTAGATTAC +
Preference number: 3 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIFGRGH*ISSLDY
Trigger: GTAATCTAATGAAGAAATCAAATGTCCCCTCCCGAA...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR TCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGCAGGGCTGTGGTGGTTaGCGCTGTCCGTCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLQGCGG*RCPSGR
Trigger: CCTCCCTGACGGACAGCGTCAACCACCACAGCCCTG...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCAGGGCTGTGGTGGTTaGCGCTGTCCGTCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIQGCGG*RCPSGR
Trigger: CCTCCCTGACGGACAGCGTCAACCACCACAGCCCTG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGCGTCATCAGCATCTTaGCTGCACGGCGAGGGTCTT +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHASSAS*LHGEGL
Trigger: AAGACCCTCGCCGTGCAGGCAAGATGCTGATGACGC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATTGGAGGAGGCTCATCTaGTCTGCCAGGGACAGTGTG +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHWRRLI*SARDSV
Trigger: CACACTGTCCCTGGCAGACCAGATGAGCCTCCTCCA...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGGCTGGACTGCCTTGGTaGAGGTCTGCCTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLAGLPW*RSASAA
Trigger: CGCTGCTGAGGCAGACCTCCACCAAGGCAGTCCAGC...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATAGTGCTGGACTGCCTTaGTGGAGGTCTGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHSAGLP*WRSASA
Trigger: TGCTGAGGCAGACCTCCACCAAGGCAGTCCAGCACT...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGTAGAAGTGCTGGACTaGCTTGGTGGAGGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHVEVLD*LGGGLP
Trigger: AGGCAGACCTCCACCAAGGCAGTCCAGCACTTCTAC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGACCCACCAGGGCTGTaGTGGTTGACGCTGTCCGTC +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIDPPGL*WLTLSV
Trigger: GACGGACAGCGTCAACCACCACAGCCCTGGTGGGTC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGAGTCCAGTCCGTTCTaGTGGCCATTCATGGTTGAA +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHESSPF*WPFMVE
Trigger: TTCAACCATGAATGGCCATCAGAACGGACTGGACTC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAGCGTCATCAGCATCTTaGCTGCACGGCGAGGGTCTT +
Preference number: 4 (lower is better)
Translates to: ALASEAQILLCDSVKRWVASSAS*LHGEGL
Trigger: AAGACCCTCGCCGTGCAGGCAAGATGCTGATGACGC...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGGTAGAAGTGCTGGACTaGCTTGGTGGAGGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLVEVLD*LGGGLP
Trigger: AGGCAGACCTCCACCAAGGCAGTCCAGCACTTCTAC...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTAGAGGGGTAGAGAGGTaGCGAGTCCAGTCCGTTCTG +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIRGVER*RVQSVL
Trigger: CAGAACGGACTGGACTCGCCACCTCTCTACCCCTCT...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAGAGGCTCATCTGGTCTaGCAGGGACAGTGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: ALASEAQILLCDSVKRWVEAHLV*QGQCGE
Trigger: TTCTCCACACTGTCCCTGGCAGACCAGATGAGCCTC...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCATCAGCATCTTGCCTaGACGGCGAGGGTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIHQHLA*TARVFH
Trigger: ATGGAAGACCCTCGCCGTGCAGGCAAGATGCTGATG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTACATCAGCATCTTGCCTaGACGGCGAGGGTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: ALASEAQILLCDSVKRWVHQHLA*TARVFH
Trigger: ATGGAAGACCCTCGCCGTGCAGGCAAGATGCTGATG...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAGTAGAAGTGCTGGACTaGCTTGGTGGAGGTCTGCCT +
Preference number: 4 (lower is better)
Translates to: ALASEAQILLCDSVKRWVVEVLD*LGGGLP
Trigger: AGGCAGACCTCCACCAAGGCAGTCCAGCACTTCTAC...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAGTCCGTCAGGGAGGCTaGGCTGGAGGGTTCCGTCTT +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVVRQGG*AGGFRL
Trigger: AAGACGGAACCCTCCAGCCCAGCCTCCCTGACGGAC...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTACCACCAGGGCTGTGGTaGTTGACGCTGTCCGTCAGG +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVPPGLW*LTLSVR
Trigger: CCTGACGGACAGCGTCAACCACCACAGCCCTGGTGG...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAGACCCACCAGGGCTGTaGTGGTTGACGCTGTCCGTC +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVDPPGL*WLTLSV
Trigger: GACGGACAGCGTCAACCACCACAGCCCTGGTGGGTC...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATCTGAGGGTTCAGGTATaGGCTGTTCTCAGCATCTAT +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHLRVQV*AVLSIY
Trigger: ATAGATGCTGAGAACAGCCCATACCTGAACCCTCAG...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATTGTTATATGGCTTTTTaGCTGGCTGCACCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHCYMAF*LAAPAE
Trigger: CTCAGCTGGTGCAGCCAGCCAAAAAGCCATATAACA...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGCAGAATCTCCATCCATaGACTCTGGAGGAGGCTCAT +
Preference number: 4 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLQNLHP*TLEEAH
Trigger: ATGAGCCTCCTCCAGAGTGCATGGATGGAGATTCTG...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGAGAGGGGTAGAGAGGTaGCGAGTCCAGTCCGTTCTG +
Preference number: 4 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRRGVER*RVQSVL
Trigger: CAGAACGGACTGGACTCGCCACCTCTCTACCCCTCT...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGGGGATCCTCTACGATaGTGCTGGAGCAGTCATCAT +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIGDPLR*CWSSHH
Trigger: ATGATGACTGCTCCAGCACCATCGTAGAGGATCCCC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTGGGGATCCTCTACGATaGTGCTGGAGCAGTCATCAT +
Preference number: 4 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAGDPLR*CWSSHH
Trigger: ATGATGACTGCTCCAGCACCATCGTAGAGGATCCCC...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGGCTGGACTGCCTTGGTaGAGGTCTGCCTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWAGLPW*RSASAA
Trigger: CGCTGCTGAGGCAGACCTCCACCAAGGCAGTCCAGC...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTGCGTCTGCGCTTTGTaGTCTCACATTCATTCGTGG +
Preference number: 4 (lower is better)
Translates to: SHLITCGLWLLKLRFFSACVCAL*SHIHSW
Trigger: CCACGAATGAATGTGAGATCACAAAGCGCAGACGCA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTATGCGTCTGCGCTTTGTaGTCTCACATTCATTCGTGG +
Preference number: 4 (lower is better)
Translates to: ALASEAQILLCDSVKRWVCVCAL*SHIHSW
Trigger: CCACGAATGAATGTGAGATCACAAAGCGCAGACGCA...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATCCTTCTCTAGCTTCATaGTCTTGTACTTCTTCACCA +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHPSLAS*SCTSSP
Trigger: TGGTGAAGAAGTACAAGAGCATGAAGCTAGAGAAGG...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGTCTTGGGCATGGAGTTaGGCATATATTCACACTTGG +
Preference number: 4 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLSWAWS*AYIHTW
Trigger: CCAAGTGTGAATATATGCTCAACTCCATGCCCAAGA...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGCTTTGCCTTCGAGTTTaGTGTTGTAGAAGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLLCLRV*CCRSAG
Trigger: TCCAGCACTTCTACAACATCAAACTCGAAGGCAAAG...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATTACTTCTTCACCAGCTaGAGGATAGCATTATTTAGG +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHYFFTS*RIALFR
Trigger: CCTAAATAATGCTATCCTGCAGCTGGTGAAGAAGTA...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATATTAGCAAGAGCTATTaGTTTGAGGGTGACGAATTC +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHISKSY*FEGDEF
Trigger: GAATTCGTCACCCTCAAAGCAATAGCTCTTGCTAAT...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAACCACCAGGGCTGTGGTaGTTGACGCTGTCCGTCAGG +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQPPGLW*LTLSVR
Trigger: CCTGACGGACAGCGTCAACCACCACAGCCCTGGTGG...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCCTCTACGATGGTGCTaGAGCAGTCATCATACAGTT +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIPLRWC*SSHHTV
Trigger: AACTGTATGATGACTGCTCCAGCACCATCGTAGAGG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTGAGGGTTCAGGTATaGGCTGTTCTCAGCATCTAT +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQILRVQV*AVLSIY
Trigger: ATAGATGCTGAGAACAGCCCATACCTGAACCCTCAG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGCTGAGGGTTCAGGTATaGGCTGTTCTCAGCATCTAT +
Preference number: 4 (lower is better)
Translates to: SHLITCGLWLLKLRFFSALRVQV*AVLSIY
Trigger: ATAGATGCTGAGAACAGCCCATACCTGAACCCTCAG...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGCAGTGTGGAGAAGCCTaGAATATGTTTTGCCCATCC +
Preference number: 4 (lower is better)
Translates to: SHLITCGLWLLKLRFFSAQCGEA*NMFCPS
Trigger: GGATGGGCAAAACATATTCCAGGCTTCTCCACACTG...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCAGTGTGGAGAAGCCTaGAATATGTTTTGCCCATCC +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIQCGEA*NMFCPS
Trigger: GGATGGGCAAAACATATTCCAGGCTTCTCCACACTG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAGCTGGACTGCCTTGGTaGAGGTCTGCCTCAGCAGCG +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQAGLPW*RSASAA
Trigger: CGCTGCTGAGGCAGACCTCCACCAAGGCAGTCCAGC...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGAGTGCTGGACTGCCTTaGTGGAGGTCTGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWSAGLP*WRSASA
Trigger: TGCTGAGGCAGACCTCCACCAAGGCAGTCCAGCACT...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATACAGGGCTGTGGTGGTTaGCGCTGTCCGTCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIQGCGG*RCPSGR
Trigger: CCTCCCTGACGGACAGCGTCAACCACCACAGCCCTG...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR TCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTTCTTGGGCATGGAGTTaGGCATATATTCACACTTGG +
Preference number: 4 (lower is better)
Translates to: AGRCTGANSTDRDPMCSASWAWS*AYIHTW
Trigger: CCAAGTGTGAATATATGCTCAACTCCATGCCCAAGA...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTCTTTGCCTTCGAGTTTaGTGTTGTAGAAGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: AGRCTGANSTDRDPMCSALCLRV*CCRSAG
Trigger: TCCAGCACTTCTACAACATCAAACTCGAAGGCAAAG...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATTCAGCCACCAACAAATaGGAGACAATCTTGTTATAT +
Preference number: 4 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHSATNK*ETILLY
Trigger: ATATAACAAGATTGTCTCGCATTTGTTGGTGGCTGA...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGGAGGCTCATCTGGTCTaGCAGGGACAGTGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWEAHLV*QGQCGE
Trigger: TTCTCCACACTGTCCCTGGCAGACCAGATGAGCCTC...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTTCTGATGGCCATTCATaGTTGAACTGTAACTCCCAC +
Preference number: 4 (lower is better)
Translates to: AGRCTGANSTDRDPMCSASDGHS*LNCNSH
Trigger: GTGGGAGTTACAGTTCAACCATGAATGGCCATCAGA...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTaGTTCCTAACCACGAGGGCAGCTAGAAACCGTATG +
Preference number: 4 (lower is better)
Translates to: LLLRQSLYTGSI*FLTTRAARNRM
Trigger: CATACGGTTTCTAGCTGCCCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp TCCTTCCTTAAATGTGCCTCTGTCTCACCTGATCACTaGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTC +
Preference number: 4 (lower is better)
Translates to: SFLKCASVSPDH*WALASEAQILL
Trigger: GAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACATTTAAGGAAGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGCCTGGAATATGTTTTaGCCATCCAATGATAACCAC +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIAWNMF*PSNDNH
Trigger: GTGGTTATCATTGGATGGGCAAAACATATTCCAGGC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTGCCTGGAATATGTTTTaGCCATCCAATGATAACCAC +
Preference number: 4 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAAWNMF*PSNDNH
Trigger: GTGGTTATCATTGGATGGGCAAAACATATTCCAGGC...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTACAGAATCTCCATCCATaGACTCTGGAGGAGGCTCAT +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVQNLHP*TLEEAH
Trigger: ATGAGCCTCCTCCAGAGTGCATGGATGGAGATTCTG...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGACATCAGCATCTTGCCTaGACGGCGAGGGTCTTCCAT +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGHQHLA*TARVFH
Trigger: ATGGAAGACCCTCGCCGTGCAGGCAAGATGCTGATG...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGTCCGTCAGGGAGGCTaGGCTGGAGGGTTCCGTCTT +
Preference number: 4 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIVRQGG*AGGFRL
Trigger: AAGACGGAACCCTCCAGCCCAGCCTCCCTGACGGAC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR CCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGTGTTATATGGCTTTTTaGCTGGCTGCACCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRCYMAF*LAAPAE
Trigger: CTCAGCTGGTGCAGCCAGCCAAAAAGCCATATAACA...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAATGGAGGAGGCTCATCTaGTCTGCCAGGGACAGTGTG +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQWRRLI*SARDSV
Trigger: CACACTGTCCCTGGCAGACCAGATGAGCCTCCTCCA...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAAAGTGCTGGACTGCCTTaGTGGAGGTCTGCCTCAGCA +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQSAGLP*WRSASA
Trigger: TGCTGAGGCAGACCTCCACCAAGGCAGTCCAGCACT...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGGAGTCCAGTCCGTTCTaGTGGCCATTCATGGTTGAA +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWESSPF*WPFMVE
Trigger: TTCAACCATGAATGGCCATCAGAACGGACTGGACTC...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGTGCGTCTGCGCTTTGTaGTCTCACATTCATTCGTGG +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWCVCAL*SHIHSW
Trigger: CCACGAATGAATGTGAGATCACAAAGCGCAGACGCA...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTCTTTGTTTGACATTCTaGAGAGAAGCTCTTCTTCGT +
Preference number: 4 (lower is better)
Translates to: AGRCTGANSTDRDPMCSALCLTF*REALLR
Trigger: ACGAAGAAGAGCTTCTCTGCAGAATGTCAAACAAAG...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027906.13
CDS-3UTR GCA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTAATTAGCAAGAGCTATTaGTTTGAGGGTGACGAATTC +
Preference number: 4 (lower is better)
Translates to: ALASEAQILLCDSVKRWVISKSY*FEGDEF
Trigger: GAATTCGTCACCCTCAAAGCAATAGCTCTTGCTAAT...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGGTCCGTCAGGGAGGCTaGGCTGGAGGGTTCCGTCTT +
Preference number: 4 (lower is better)
Translates to: TKELRNQMAVTDLDEKARVRQGG*AGGFRL
Trigger: AAGACGGAACCCTCCAGCCCAGCCTCCCTGACGGAC...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTATATTCACACTTGGTCTaGGGATCCTCTACGATGGTG +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVYSHLV*GSSTMV
Trigger: CACCATCGTAGAGGATCCCCAGACCAAGTGTGAATA...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp AATGGTATTGGCTCACAGCTCCTTCTGAGACAGAGTTaGTATACAGGCAGCATCTTGTTCCTAACCACGAGG +
Preference number: 4 (lower is better)
Translates to: NGIGSQLLLRQS*YTGSILFLTTR
Trigger: CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAGCTGTGAGCCAATACCATT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp CACAGAATACAGAGAGCAGCTACTAACACTGGTCCATaGGTAAAGCGTTCTACGGAGGTTACTGGTTTCTGG +
Preference number: 4 (lower is better)
Translates to: HRIQRAATNTGP*VKRSTEVTGFW
Trigger: CCAGAAACCAGTAACCTCCGTAGAACGCTTTACCAATGGACCAGTGTTAGTAGCTGCTCTCTGTATTCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGAGAGTCCAGTCCGTTCTaGTGGCCATTCATGGTTGAA +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGESSPF*WPFMVE
Trigger: TTCAACCATGAATGGCCATCAGAACGGACTGGACTC...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGGATCCTCTACGATGGTaGTGGAGCAGTCATCATACA +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWDPLRW*WSSHHT
Trigger: TGTATGATGACTGCTCCAGCACCATCGTAGAGGATC...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACGATCCTCTACGATGGTaGTGGAGCAGTCATCATACA +
Preference number: 4 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHDPLRW*WSSHHT
Trigger: TGTATGATGACTGCTCCAGCACCATCGTAGAGGATC...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGTCTCAGCATCTATTCTaGGCTTGTACTTCTGCCGAC +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWSQHLF*ACTSAD
Trigger: GTCGGCAGAAGTACAAGCGCAGAATAGATGCTGAGA...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGACAGAATCTCCATCCATaGACTCTGGAGGAGGCTCAT +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGQNLHP*TLEEAH
Trigger: ATGAGCCTCCTCCAGAGTGCATGGATGGAGATTCTG...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGCGTCATCAGCATCTTaGCTGCACGGCGAGGGTCTT +
Preference number: 4 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIASSAS*LHGEGL
Trigger: AAGACCCTCGCCGTGCAGGCAAGATGCTGATGACGC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR CCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACTGTTATATGGCTTTTTaGCTGGCTGCACCAGCTGAG +
Preference number: 4 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHCYMAF*LAAPAE
Trigger: CTCAGCTGGTGCAGCCAGCCAAAAAGCCATATAACA...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATATGGAGGAGGCTCATCTaGTCTGCCAGGGACAGTGTG +
Preference number: 4 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIWRRLI*SARDSV
Trigger: CACACTGTCCCTGGCAGACCAGATGAGCCTCCTCCA...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR TCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGGTGTCGATCTTTGTTTaGCATTCTGCAGAGAAGCTC +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWVSIFV*HSAEKL
Trigger: GAGCTTCTCTGCAGAATGTCAAACAAAGATCGACAC...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027906.13
CDS-3UTR TCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACCTTTGCCTTCGAGTTTaGTGTTGTAGAAGTGCTGGA +
Preference number: 4 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHLCLRV*CCRSAG
Trigger: TCCAGCACTTCTACAACATCAAACTCGAAGGCAAAG...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGAGATCCTCTACGATGGTaGTGGAGCAGTCATCATACA +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGDPLRW*WSSHHT
Trigger: TGTATGATGACTGCTCCAGCACCATCGTAGAGGATC...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCATTATATAATCGTCTaGATAGACAAGTTCATCCTC +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQIHYIIV*IDKFIL
Trigger: GAGGATGAACTTGTCTATGCAGACGATTATATAATG...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTACCTTCTCTAGCTTCATaGTCTTGTACTTCTTCACCA +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVPSLAS*SCTSSP
Trigger: TGGTGAAGAAGTACAAGAGCATGAAGCTAGAGAAGG...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGTCCACATCTTCTATATaGATGGAATCTGAATTAGCA +
Preference number: 4 (lower is better)
Translates to: SHLITCGLWLLKLRFFSASTSSI*MESELA
Trigger: TGCTAATTCAGATTCCATGCATATAGAAGATGTGGA...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTTCCACATCTTCTATATaGATGGAATCTGAATTAGCA +
Preference number: 4 (lower is better)
Translates to: CASVSPDHLWALASEAQISTSSI*MESELA
Trigger: TGCTAATTCAGATTCCATGCATATAGAAGATGTGGA...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACTCTGATGGCCATTCATaGTTGAACTGTAACTCCCAC +
Preference number: 4 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHSDGHS*LNCNSH
Trigger: GTGGGAGTTACAGTTCAACCATGAATGGCCATCAGA...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGACCTCTACGATGGTGCTaGAGCAGTCATCATACAGTT +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGPLRWC*SSHHTV
Trigger: AACTGTATGATGACTGCTCCAGCACCATCGTAGAGG...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp TCCTTCAGGGTTCATTTGTCCTTCATTAGTGTTCAATaGTTCAAAGCCAGCACGAGGTTGCGGTATCCTTAC +
Preference number: 4 (lower is better)
Translates to: SFRVHLSFISVQ*FKASTRLRYPY
Trigger: GTAAGGATACCGCAACCTCGTGCTGGCTTTGAACAATTGAACACTAATGAAGGACAAATGAACCCTGAAGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp GGTTATTCGGCGACTGTAGGTTTCGGGAGGGGACATTaGATTTCTTCATTAGATTACACCTGGTTACAGTCT +
Preference number: 4 (lower is better)
Translates to: GYSATVGFGRGH*ISSLDYTWLQS
Trigger: AGACTGTAACCAGGTGTAATCTAATGAAGAAATCAAATGTCCCCTCCCGAAACCTACAGTCGCCGAATAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGGAGGCTCATCTGGTCTaGCAGGGACAGTGTGGAGAA +
Preference number: 4 (lower is better)
Translates to: TKELRNQMAVTDLDEKAREAHLV*QGQCGE
Trigger: TTCTCCACACTGTCCCTGGCAGACCAGATGAGCCTC...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp TTTGCGTTGCAATGTACTTTAGGTACGGTTCTCTCTTaGATTCCTTACTCACTGGGGATGTCATGGTTCATG +
Preference number: 4 (lower is better)
Translates to: FALQCTLGTVLS*IPYSLGMSWFM
Trigger: CATGAACCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACATTGCAACGCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp TTCATTAGTGTTCAATTGTTCAAAGCCAGCACGAGGTaGCGGTATCCTTACCCCTCTCTAGTATTGCATGAA +
Preference number: 4 (lower is better)
Translates to: FISVQLFKASTR*RYPYPSLVLHE
Trigger: TTCATGCAATACTAGAGAGGGGTAAGGATACCGCAACCTCGTGCTGGCTTTGAACAATTGAACACTAATGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAATCTTGGGCATGGAGTTaGGCATATATTCACACTTGG +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQSWAWS*AYIHTW
Trigger: CCAAGTGTGAATATATGCTCAACTCCATGCCCAAGA...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTATCAGCCACCAACAAATaGGAGACAATCTTGTTATAT +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVSATNK*ETILLY
Trigger: ATATAACAAGATTGTCTCGCATTTGTTGGTGGCTGA...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGCATTATATAATCGTCTaGATAGACAAGTTCATCCTC +
Preference number: 4 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRHYIIV*IDKFIL
Trigger: GAGGATGAACTTGTCTATGCAGACGATTATATAATG...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACTACTTCTTCACCAGCTaGAGGATAGCATTATTTAGG +
Preference number: 4 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHYFFTS*RIALFR
Trigger: CCTAAATAATGCTATCCTGCAGCTGGTGAAGAAGTA...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGATGGCCATTCATGGTTaGACTGTAACTCCCACTGGC +
Preference number: 4 (lower is better)
Translates to: TKELRNQMAVTDLDEKARMAIHG*TVTPTG
Trigger: GCCAGTGGGAGTTACAGTTCAACCATGAATGGCCAT...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGTACTCTATGTTACCTTaGATCGTCCTCTTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWYSMLP*IVLLKN
Trigger: ATTCTTCAAGAGGACGATTCAAGGTAACATAGAGTA...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAACCTTCTCTAGCTTCATaGTCTTGTACTTCTTCACCA +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQPSLAS*SCTSSP
Trigger: TGGTGAAGAAGTACAAGAGCATGAAGCTAGAGAAGG...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTATCCACATCTTCTATATaGATGGAATCTGAATTAGCA +
Preference number: 4 (lower is better)
Translates to: DVARGSWDKVEETYQEDVSTSSI*MESELA
Trigger: TGCTAATTCAGATTCCATGCATATAGAAGATGTGGA...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGATCAGCCACCAACAAATaGGAGACAATCTTGTTATAT +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGSATNK*ETILLY
Trigger: ATATAACAAGATTGTCTCGCATTTGTTGGTGGCTGA...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGTATTCACACTTGGTCTaGGGATCCTCTACGATGGTG +
Preference number: 4 (lower is better)
Translates to: TKELRNQMAVTDLDEKARYSHLV*GSSTMV
Trigger: CACCATCGTAGAGGATCCCCAGACCAAGTGTGAATA...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
3UTR CAA 72 bp GGTATTTTGCTTAACGCACACAAAGTAGCAATAGTTTaGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAA +
Preference number: 4 (lower is better)
Translates to: GILLNAHKVAIV*EASPHQKGLQQ
Trigger: TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTGTGCGTTAAGCAAAATACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp CACAAAGTAGCAATAGTTTTGGAAGCAAGTCCGCACCAAAAAGGTTTGCAACAATACTCTATGTTACCTTaGATCGTCCTCTTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: HKVAIVLEASPHQKGLQQYSMLP*IVLLKN
Trigger: ATTCTTCAAGAGGACGATTCAAGGTAACATAGAGTA...TTGTTGCAAACCTTTTTGGTGCGGACTTGCTTCCAAAACTATTGCTACTTTGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGCCTGGAATATGTTTTaGCCATCCAATGATAACCAC +
Preference number: 4 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIAWNMF*PSNDNH
Trigger: GTGGTTATCATTGGATGGGCAAAACATATTCCAGGC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR GCA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGACATTATATAATCGTCTaGATAGACAAGTTCATCCTC +
Preference number: 4 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGHYIIV*IDKFIL
Trigger: GAGGATGAACTTGTCTATGCAGACGATTATATAATG...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR GCA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAATTAGCAAGAGCTATTaGTTTGAGGGTGACGAATTC +
Preference number: 4 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIISKSY*FEGDEF
Trigger: GAATTCGTCACCCTCAAAGCAATAGCTCTTGCTAAT...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
3UTR CAA 72 bp ATCCGTGGTAATATGCACCTTCCCTTCAACTATTGCTaGAGTAAGTTAAATCCCCATATTAATAAATGGCTG +
Preference number: 4 (lower is better)
Translates to: IRGNMHLPFNYC*SKLNPHINKWL
Trigger: CAGCCATTTATTAATATGGGGATTTAACTTACTCAAGCAATAGTTGAAGGGAAGGTGCATATTACCACGGAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR TCA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGTACTCTATGTTACCTTaGATCGTCCTCTTGAAGAAT +
Preference number: 4 (lower is better)
Translates to: TKELRNQMAVTDLDEKARYSMLP*IVLLKN
Trigger: ATTCTTCAAGAGGACGATTCAAGGTAACATAGAGTA...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CCA 90 bp AGGGGTAGAGAGGTGGCGAGTCCAGTCCGTTCTGATGGCCATTCATaGTTGAACTGTAACTCCCACTGGCGTCGGAAGACCCACCAGGGC +
Preference number: 5 (lower is better)
Translates to: RGREVASPVRSDGHS*LNCNSHWRRKTHQG
Trigger: GCCCTGGTGGGTCTTCCGACGCCAGTGGGAGTTACAGTTCAACCATGAATGGCCATCAGAACGGACTGGACTCGCCACCTCTCTACCCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS TCA 90 bp GTAGAGAGGTGGCGAGTCCAGTCCGTTCTGATGGCCATTCATGGTTaGACTGTAACTCCCACTGGCGTCGGAAGACCCACCAGGGCTGTG +
Preference number: 5 (lower is better)
Translates to: VERWRVQSVLMAIHG*TVTPTGVGRPTRAV
Trigger: CACAGCCCTGGTGGGTCTTCCGACGCCAGTGGGAGTTACAGTTCAACCATGAATGGCCATCAGAACGGACTGGACTCGCCACCTCTCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGCCAGGGCTGTGGTGGTaGACGCTGTCCGTCAGGGAG +
Preference number: 5 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRPGLWW*TLSVRE
Trigger: CTCCCTGACGGACAGCGTCAACCACCACAGCCCTGG...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGAGTGTGGTGAGGGCTTaGATGTCACTGTCGGGGACA +
Preference number: 5 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLSVVRA*MSLSGT
Trigger: TGTCCCCGACAGTGACATCAAAGCCCTCACCACACT...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATAGCATATATTCACACTaGGTCTGGGGATCCTCTACG +
Preference number: 5 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHSIYSH*VWGSST
Trigger: CGTAGAGGATCCCCAGACCAAGTGTGAATATATGCT...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGAGTGTGGTGAGGGCTTaGATGTCACTGTCGGGGACA +
Preference number: 5 (lower is better)
Translates to: SHLITCGLWLLKLRFFSASVVRA*MSLSGT
Trigger: TGTCCCCGACAGTGACATCAAAGCCCTCACCACACT...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATTCTAGCTTCATGCTCTaGTACTTCTTCACCAGCTGC +
Preference number: 5 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHSSFML*YFFTSC
Trigger: GCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTAGA...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS TCA 90 bp AGGCGATGTCGCCACACACTAAGCACAGTCTCTTGGGCATGGAGTTaGGCATATATTCACACTTGGTCTGGGGATCCTCTACGATGGTGC +
Preference number: 5 (lower is better)
Translates to: RRCRHTLSTVSWAWS*AYIHTWSGDPLRWC
Trigger: GCACCATCGTAGAGGATCCCCAGACCAAGTGTGAATATATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGTGTGTGGCGACATCGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGACCAGGGCTGTGGTGGTaGACGCTGTCCGTCAGGGAG +
Preference number: 5 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGPGLWW*TLSVRE
Trigger: CTCCCTGACGGACAGCGTCAACCACCACAGCCCTGG...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp TGTGCCTCTGTCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTGCATCTATTCTGCGCTaGTACTTCTGCCGACCTCCA +
Preference number: 5 (lower is better)
Translates to: CASVSPDHLWALASEAQIASILR*YFCRPP
Trigger: TGGAGGTCGGCAGAAGTACAAGCGCAGAATAGATGC...AATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGACAGAGGCACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGCTGGAGGGTTCCGTCTaGATGAAGGACGAACAGCTG +
Preference number: 5 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRLEGSV*MKDEQL
Trigger: CAGCTGTTCGTCCTTCATCAAGACGGAACCCTCCAG...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GAAAGCAAGGAGAAGCAGCCAATGCCGCCACTTAGGTTGTCTGATCGAAGGCTGGCAAGAGCTATTGCTTaGAGGGTGACGAATTCTTCC +
Preference number: 5 (lower is better)
Translates to: ESKEKQPMPPLRLSDRRLARAIA*RVTNSS
Trigger: GGAAGAATTCGTCACCCTCAAAGCAATAGCTCTTGC...CAGCCTTCGATCAGACAACCTAAGTGGCGGCATTGGCTGCTTCTCCTTGCTTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGAGCGTCATCAGCATCTaGCCTGCACGGCGAGGGTCT +
Preference number: 5 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWSVISI*PARRGS
Trigger: AGACCCTCGCCGTGCAGGCAAGATGCTGATGACGCT...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS TCA 90 bp TGCGAGACAATCTTGTTATATGGCTTTTTGGCTGGCTGCACCAGCTaGGGGTTCAGGTATGGGCTGTTCTCAGCATCTATTCTGCGCTTG +
Preference number: 5 (lower is better)
Translates to: CETILLYGFLAGCTS*GFRYGLFSASILRL
Trigger: CAAGCGCAGAATAGATGCTGAGAACAGCCCATACCTGAACCCTCAGCTGGTGCAGCCAGCCAAAAAGCCATATAACAAGATTGTCTCGCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp TCTCACCTGATCACTTGTGGGCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTAAGCACAGTCTCTaGGGCATGGAGTTGAGCATA +
Preference number: 5 (lower is better)
Translates to: SHLITCGLWLLKLRFFSATKHSL*GMELSI
Trigger: TATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGT...CGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGCCCACAAGTGATCAGGTGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATCCCATGTGCAGTGCTCGTGGATGGGACCACTCGGTGTCACGGCAGGTATCATGTACTCTATGTTACCTaGAATCGTCCTCTTGAAGAA +
Preference number: 5 (lower is better)
Translates to: IPCAVLVDGTTRCHGRYHVLYVT*NRPLEE
Trigger: TTCTTCAAGAGGACGATTCAAGGTAACATAGAGTAC...ATGATACCTGCCGTGACACCGAGTGGTCCCATCCACGAGCACTGCACATGGGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAAGTGTGGTGAGGGCTTaGATGTCACTGTCGGGGACA +
Preference number: 5 (lower is better)
Translates to: DVARGSWDKVEETYQEDVSVVRA*MSLSGT
Trigger: TGTCCCCGACAGTGACATCAAAGCCCTCACCACACT...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTATCTAGCTTCATGCTCTaGTACTTCTTCACCAGCTGC +
Preference number: 5 (lower is better)
Translates to: ALASEAQILLCDSVKRWVSSFML*YFFTSC
Trigger: GCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTAGA...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGAAGCGTCATCAGCATCTaGCCTGCACGGCGAGGGTCT +
Preference number: 5 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGSVISI*PARRGS
Trigger: AGACCCTCGCCGTGCAGGCAAGATGCTGATGACGCT...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GCTCTGGCTTCTGAAGCTCAGATTCTTCTCTGCGACTCAGTGAAACGGTGGGTACTCTTGGGCATGGAGTaGAGCATATATTCACACTTG +
Preference number: 5 (lower is better)
Translates to: ALASEAQILLCDSVKRWVLLGME*SIYSHL
Trigger: CAAGTGTGAATATATGCTCAACTCCATGCCCAAGAG...TACCCACCGTTTCACTGAGTCGCAGAGAAGAATCTGAGCTTCAGAAGCCAGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTCTCTTGGGCATGGAGTaGAGCATATATTCACACTTG +
Preference number: 5 (lower is better)
Translates to: AGRCTGANSTDRDPMCSALLGME*SIYSHL
Trigger: CAAGTGTGAATATATGCTCAACTCCATGCCCAAGAG...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAGCATCTATTCTGCGCTaGTACTTCTGCCGACCTCCA +
Preference number: 5 (lower is better)
Translates to: DVARGSWDKVEETYQEDVASILR*YFCRPP
Trigger: TGGAGGTCGGCAGAAGTACAAGCGCAGAATAGATGC...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACGCATCTATTCTGCGCTaGTACTTCTGCCGACCTCCA +
Preference number: 5 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHASILR*YFCRPP
Trigger: TGGAGGTCGGCAGAAGTACAAGCGCAGAATAGATGC...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAAGCATATATTCACACTaGGTCTGGGGATCCTCTACG +
Preference number: 5 (lower is better)
Translates to: DVARGSWDKVEETYQEDVSIYSH*VWGSST
Trigger: CGTAGAGGATCCCCAGACCAAGTGTGAATATATGCT...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAACTAAGCACAGTCTCTaGGGCATGGAGTTGAGCATA +
Preference number: 5 (lower is better)
Translates to: DVARGSWDKVEETYQEDVTKHSL*GMELSI
Trigger: TATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGT...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GATGTGGCCAGAGGATCGTGGGATAAAGTAGAGGAAACCTATCAGGAAGATGTAGCAAGAGCTATTGCTTaGAGGGTGACGAATTCTTCC +
Preference number: 5 (lower is better)
Translates to: DVARGSWDKVEETYQEDVARAIA*RVTNSS
Trigger: GGAAGAATTCGTCACCCTCAAAGCAATAGCTCTTGC...TACATCTTCCTGATAGGTTTCCTCTACTTTATCCCACGATCCTCTGGCCACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp GCAGGGAGGTGTACTGGTGCTAATTCTACAGATAGGGATCCCATGTGCAGTGCTAAATGCGAGACAATCTaGTTATATGGCTTTTTGGCT +
Preference number: 5 (lower is better)
Translates to: AGRCTGANSTDRDPMCSAKCETI*LYGFLA
Trigger: AGCCAAAAAGCCATATAACAAGATTGTCTCGCATTT...AGCACTGCACATGGGATCCCTATCTGTAGAATTAGCACCAGTACACCTCCCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ACAAAAGAATTAAGGAATCAAATGGCTGTAACTGATCTAGATGAGAAAGCAAGGAGCGTCATCAGCATCTaGCCTGCACGGCGAGGGTCT +
Preference number: 5 (lower is better)
Translates to: TKELRNQMAVTDLDEKARSVISI*PARRGS
Trigger: AGACCCTCGCCGTGCAGGCAAGATGCTGATGACGCT...CCTTGCTTTCTCATCTAGATCAGTTACAGCCATTTGATTCCTTAATTCTTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATACTGGAGGGTTCCGTCTaGATGAAGGACGAACAGCTG +
Preference number: 5 (lower is better)
Translates to: TQMDICWSTQYGTHHKNILEGSV*MKDEQL
Trigger: CAGCTGTTCGTCCTTCATCAAGACGGAACCCTCCAG...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS-3UTR CAA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGAACTAAGCACAGTCTCTaGGGCATGGAGTTGAGCATA +
Preference number: 5 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGTKHSL*GMELSI
Trigger: TATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGT...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGGTACTCTATGTTACCTaGAATCGTCCTCTTGAAGAA +
Preference number: 5 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRVLYVT*NRPLEE
Trigger: TTCTTCAAGAGGACGATTCAAGGTAACATAGAGTAC...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGATCTAGCTTCATGCTCTaGTACTTCTTCACCAGCTGC +
Preference number: 5 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGSSFML*YFFTSC
Trigger: GCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTAGA...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp TGTACTTTAGGTACGGTTCTCTCTTTGATTCCTTACTCACTGGGGATGTCATGGTGTGTCGATCTTTGTTaGACATTCTGCAGAGAAGCT +
Preference number: 5 (lower is better)
Translates to: CTLGTVLSLIPYSLGMSWCVDLC*TFCREA
Trigger: AGCTTCTCTGCAGAATGTCAAACAAAGATCGACACA...CCATGACATCCCCAGTGAGTAAGGAATCAAAGAGAGAACCGTACCTAAAGTACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027906.13
CDS-3UTR CAA 90 bp ATTCTTCGACATCATTCTTGGGTTTATCTTCCCTTTTCAACGTGCAGGATGGGACTCTTGGGCATGGAGTaGAGCATATATTCACACTTG +
Preference number: 5 (lower is better)
Translates to: ILRHHSWVYLPFSTCRMGLLGME*SIYSHL
Trigger: CAAGTGTGAATATATGCTCAACTCCATGCCCAAGAG...TCCCATCCTGCACGTTGAAAAGGGAAGATAAACCCAAGAATGATGTCGAAGAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp CTCCTTCTGAGACAGAGTTTGTATACAGGCAGCATCTTGTTCCTAACCACGAGGAAATGCGAGACAATCTaGTTATATGGCTTTTTGGCT +
Preference number: 5 (lower is better)
Translates to: LLLRQSLYTGSILFLTTRKCETI*LYGFLA
Trigger: AGCCAAAAAGCCATATAACAAGATTGTCTCGCATTT...CCTCGTGGTTAGGAACAAGATGCTGCCTGTATACAAACTCTGTCTCAGAAGGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ATGTTTGGGACCAGACTGGCACACAACATAAATTGCATCCGTGGTAATATGCACGTACTCTATGTTACCTaGAATCGTCCTCTTGAAGAA +
Preference number: 5 (lower is better)
Translates to: MFGTRLAHNINCIRGNMHVLYVT*NRPLEE
Trigger: TTCTTCAAGAGGACGATTCAAGGTAACATAGAGTAC...GTGCATATTACCACGGATGCAATTTATGTTGTGTGCCAGTCTGGTCCCAAACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS-3UTR CAA 90 bp ACACAAATGGACATTTGCTGGAGCACACAGTATGGTACACATCACAAAAATATAGCAAGAGCTATTGCTTaGAGGGTGACGAATTCTTCC +
Preference number: 5 (lower is better)
Translates to: TQMDICWSTQYGTHHKNIARAIA*RVTNSS
Trigger: GGAAGAATTCGTCACCCTCAAAGCAATAGCTCTTGC...TATATTTTTGTGATGTGTACCATACTGTGTGCTCCAGCAAATGTCCATTTGTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
CDS GCA 72 bp TGGAGCAGTCATCATACAGTTTCCGGACAGGCCCGCTaGCTCCCAGGATCGGAGCAGAGGGGTAGAGAGGTG +
Preference number: 6 (lower is better)
Translates to: WSSHHTVSGQAR*LPGSEQRGREV
Trigger: CACCTCTCTACCCCTCTGCTCCGATCCTGGGAGGCAGCGGGCCTGTCCGGAAACTGTATGATGACTGCTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CAA 90 bp GGTAGAGAGGTGGCGAGTCCAGTCCGTTCTGATGGCCATTCATGGTaGAACTGTAACTCCCACTGGCGTCGGAAGACCCACCAGGGCTGT +
Preference number: 6 (lower is better)
Translates to: GREVASPVRSDGHSW*NCNSHWRRKTHQGC
Trigger: ACAGCCCTGGTGGGTCTTCCGACGCCAGTGGGAGTTACAGTTCAACCATGAATGGCCATCAGAACGGACTGGACTCGCCACCTCTCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS TCA 72 bp TGGCGAGTCCAGTCCGTTCTGATGGCCATTCATGGTTaGACTGTAACTCCCACTGGCGTCGGAAGACCCACC +
Preference number: 6 (lower is better)
Translates to: WRVQSVLMAIHG*TVTPTGVGRPT
Trigger: GGTGGGTCTTCCGACGCCAGTGGGAGTTACAGTTCAACCATGAATGGCCATCAGAACGGACTGGACTCGCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CCA 72 bp GAGGTGGCGAGTCCAGTCCGTTCTGATGGCCATTCATaGTTGAACTGTAACTCCCACTGGCGTCGGAAGACC +
Preference number: 6 (lower is better)
Translates to: EVASPVRSDGHS*LNCNSHWRRKT
Trigger: GGTCTTCCGACGCCAGTGGGAGTTACAGTTCAACCATGAATGGCCATCAGAACGGACTGGACTCGCCACCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CAA 72 bp CTGTCCGTCAGGGAGGCTGGGCTGGAGGGTTCCGTCTaGATGAAGGACGAACAGCTGGAATCAATGTGTCGA +
Preference number: 6 (lower is better)
Translates to: LSVREAGLEGSV*MKDEQLESMCR
Trigger: TCGACACATTGATTCCAGCTGTTCGTCCTTCATCAAGACGGAACCCTCCAGCCCAGCCTCCCTGACGGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
ENSMUST00000127489.8
CDS GCA 72 bp TTTGCCTTCGAGTTTGATGTTGTAGAAGTGCTGGACTaGCTTGGTGGAGGTCTGCCTCAGCAGCGGCAGCGT +
Preference number: 6 (lower is better)
Translates to: FAFEFDVVEVLD*LGGGLPQQRQR
Trigger: ACGCTGCCGCTGCTGAGGCAGACCTCCACCAAGGCAGTCCAGCACTTCTACAACATCAAACTCGAAGGCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CAA 90 bp GAGGCGATGTCGCCACACACTAAGCACAGTCTCTTGGGCATGGAGTaGAGCATATATTCACACTTGGTCTGGGGATCCTCTACGATGGTG +
Preference number: 6 (lower is better)
Translates to: EAMSPHTKHSLLGME*SIYSHLVWGSSTMV
Trigger: CACCATCGTAGAGGATCCCCAGACCAAGTGTGAATATATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGTGTGTGGCGACATCGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS GCA 72 bp TATATTCACACTTGGTCTGGGGATCCTCTACGATGGTaGTGGAGCAGTCATCATACAGTTTCCGGACAGGCC +
Preference number: 6 (lower is better)
Translates to: YIHTWSGDPLRW*WSSHHTVSGQA
Trigger: GGCCTGTCCGGAAACTGTATGATGACTGCTCCAGCACCATCGTAGAGGATCCCCAGACCAAGTGTGAATATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CAA 72 bp CCAGAGGCGATGTCGCCACACACTAAGCACAGTCTCTaGGGCATGGAGTTGAGCATATATTCACACTTGGTC +
Preference number: 6 (lower is better)
Translates to: PEAMSPHTKHSL*GMELSIYSHLV
Trigger: GACCAAGTGTGAATATATGCTCAACTCCATGCCCAAGAGACTGTGCTTAGTGTGTGGCGACATCGCCTCTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CCA 72 bp CAAATGCGAGACAATCTTGTTATATGGCTTTTTGGCTaGCTGCACCAGCTGAGGGTTCAGGTATGGGCTGTT +
Preference number: 6 (lower is better)
Translates to: QMRDNLVIWLFG*LHQLRVQVWAV
Trigger: AACAGCCCATACCTGAACCCTCAGCTGGTGCAGCCAGCCAAAAAGCCATATAACAAGATTGTCTCGCATTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS TCA 72 bp GGACGAACAGCTGGAATCAATGTGTCGATCTTTGTTTaGCATTCTGCAGAGAAGCTCTTCTTCGTAGTGCAG +
Preference number: 6 (lower is better)
Translates to: GRTAGINVSIFV*HSAEKLFFVVQ
Trigger: CTGCACTACGAAGAAGAGCTTCTCTGCAGAATGTCAAACAAAGATCGACACATTGATTCCAGCTGTTCGTCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027906.13
CDS GCA 72 bp TTCTCTAGCTTCATGCTCTTGTACTTCTTCACCAGCTaGAGGATAGCATTATTTAGGTCAAGAAGGCCTGCT +
Preference number: 6 (lower is better)
Translates to: FSSFMLLYFFTS*RIALFRSRRPA
Trigger: AGCAGGCCTTCTTGACCTAAATAATGCTATCCTGCAGCTGGTGAAGAAGTACAAGAGCATGAAGCTAGAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8
CDS CAA 72 bp ATATGCATGGAATCTGAATTAGCAAGAGCTATTGCTTaGAGGGTGACGAATTCTTCCTTCTCTAGCTTCATG +
Preference number: 6 (lower is better)
Translates to: ICMESELARAIA*RVTNSSFSSFM
Trigger: CATGAAGCTAGAGAAGGAAGAATTCGTCACCCTCAAAGCAATAGCTCTTGCTAATTCAGATTCCATGCATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000027906.13
ENSMUST00000110938.2
ENSMUST00000110939.8