Pregenerated sensors for ESRRA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024955Ensembl transcript IDs: ENSMUST00000025906.12, ENSMUST00000172975.3, ENSMUST00000239322.2
Found 47 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGCGGATGGCATTGCCCTaGCCCTGCCAGCAGGCTATG | + |
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Preference number: 2 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVRMALP*PCQQAM Trigger: CATAGCCTGCTGGCAGGGCCAGGGCAATGCCATCCG...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| 3UTR-3UTR GCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGGGGGCTAACACCCTATaGTGGGCAGATCCTGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVGANTL*WADPAS Trigger: GCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCC...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| 3UTR-3UTR GCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGCCCAGACTCCAGCTTTaGCCCTTTGGGGCTAACACC | + |
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Preference number: 2 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVPRLQL*PFGANT Trigger: GGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGG...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| 3UTR-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGGCTAACACCCTATGCTaGGCAGATCCTGCCAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVANTLC*ADPASH Trigger: GTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGC...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| 3UTR GCA 72 bp | TGGCATTGCCCTGGCCCTGCCAGCAGGCTATGGCACTaGCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACA | + |
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Preference number: 3 (lower is better) Translates to: WHCPGPASRLWH*PDSSFAPLGLT Trigger: TGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCAGTGCCATAGCCTGCTGGCAGGGCCAGGGCAATGCCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| 3UTR-3UTR CAA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGTCCAGCTTTGCCCCTTaGGGGCTAACACCCTATGCT | + |
|
Preference number: 3 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVSSFAP*GLTPYA Trigger: AGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGA...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR TCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCGACGCACACCCTCCTTaGGCATGCCCACCCGCAGGC | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPDAHPP*ACPPAG Trigger: GCCTGCGGGTGGGCATGCTCAAGGAGGGTGTGCGTC...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000025906.12 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTGCAGCGGGCTGGAGCTaGACCAGAGGCCAGGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: PLGLTPYAGQILPATPPCAAGWS*TRGQGH Trigger: GTGACCCTGGCCTCTGGTCCAGCTCCAGCCCGCTGC...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCCTCCTCCTTGTGCCCTaGAAGGCAGCGGGCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPLLLVP*KAAGWS Trigger: GCTCCAGCCCGCTGCCTTCCAGGGCACAAGGAGGAG...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR TCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCGACGCACACCCTCCTTaGGCATGCCCACCCGCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIDAHPP*ACPPAG Trigger: GCCTGCGGGTGGGCATGCTCAAGGAGGGTGTGCGTC...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000025906.12 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCTCCTCCTCCTCCTTGTaGCCTGGAAGGCAGCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPSSSSL*PGRQRA Trigger: AGCCCGCTGCCTTCCAGGGCACAAGGAGGAGGAGGA...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCGGCCAGGACTTTGCCTaGTGTCTGGCGGAGGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPGQDFA*CLAEEW Trigger: CCACTCCTCCGCCAGACAGCAGGCAAAGTCCTGGCC...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCGGCTGGACATGGTGCTaGTCACCTTGGGCTCCGGCA | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPGWTWC*SPWAPA Trigger: TGCCGGAGCCCAAGGTGACCAGCACCATGTCCAGCC...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTGCACTAGCTTCCCACTaGCCTGCTCACCAGACCCTG | + |
|
Preference number: 4 (lower is better) Translates to: PLGLTPYAGQILPATPPCALASH*PAHQTL Trigger: CAGGGTCTGGTGAGCAGGGCAGTGGGAAGCTAGTGC...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCCACCAGAGCGTTCACTaGGGCTGTCTTCCTGGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPHQSVH*GCLPGS Trigger: GGACCCAGGAAGACAGCCCCAGTGAACGCTCTGGTG...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTTCCATCGGGGCTTGCTaGGTCAGGCATGGCGTACAG | + |
|
Preference number: 4 (lower is better) Translates to: PLGLTPYAGQILPATPPCSIGAC*VRHGVQ Trigger: CTGTACGCCATGCCTGACCCAGCAAGCCCCGATGGA...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCTGTCTGGCGGAGGAGTaGCAGCGTAAGCAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPCLAEE*QRKQQP Trigger: AGGCTGCTGCTTACGCTGCCACTCCTCCGCCAGACA...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCGGCCAGGACTTTGCCTaGTGTCTGGCGGAGGAGTGG | + |
|
Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIGQDFA*CLAEEW Trigger: CCACTCCTCCGCCAGACAGCAGGCAAAGTCCTGGCC...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCAATGGGCCAGGACTTTaGCTGCTGTCTGGCGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPNGPGL*LLSGGG Trigger: TCCTCCGCCAGACAGCAGGCAAAGTCCTGGCCCATT...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCCTGGCTGGACATGGTaGTGGTCACCTTGGGCTCCG | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIPGWTW*WSPWAP Trigger: CGGAGCCCAAGGTGACCAGCACCATGTCCAGCCAGG...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCGCACTAGCTTCCCACTaGCCTGCTCACCAGACCCTG | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIALASH*PAHQTL Trigger: CAGGGTCTGGTGAGCAGGGCAGTGGGAAGCTAGTGC...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTCAAAGGGTCCACCTCTaGCCGCCGTTTGTACTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: PLGLTPYAGQILPATPPCQRVHL*PPFVLL Trigger: CAGAAGTACAAACGGCGGCCAGAGGTGGACCCTTTG...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCACCAGAGCGTTCACTaGGGCTGTCTTCCTGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIHQSVH*GCLPGS Trigger: GGACCCAGGAAGACAGCCCCAGTGAACGCTCTGGTG...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCTGTCTGGCGGAGGAGTaGCAGCGTAAGCAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQICLAEE*QRKQQP Trigger: AGGCTGCTGCTTACGCTGCCACTCCTCCGCCAGACA...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCACTCGGCGGCGCCGCTaGCTGCTTGTAGGACACAAA | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQITRRRR*LLVGHK Trigger: TTTGTGTCCTACAAGCAGCCAGCGGCGCCGCCGAGT...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCAATGGGCCAGGACTTTaGCTGCTGTCTGGCGGAGGA | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQINGPGL*LLSGGG Trigger: TCCTCCGCCAGACAGCAGGCAAAGTCCTGGCCCATT...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACTGTCAGGACTGGCTaGCTCTGCCTTGATGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: LCPFGANTLCWADPASHPTVRTG*LCLDVE Trigger: CTCTACATCAAGGCAGAGCCAGCCAGTCCTGACAGT...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGGCAGCGGGCTGGAGCTaGACCAGAGGCCAGGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVAAGWS*TRGQGH Trigger: GTGACCCTGGCCTCTGGTCCAGCTCCAGCCCGCTGC...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTTCCAGACGCACACCCTaGATGGTCCTCTTGAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: PLGLTPYAGQILPATPPCSRRTP*MVLLKK Trigger: CTTCTTCAAGAGGACCATCCAGGGTGTGCGTCTGGA...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172975.3 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGTGGTGCTGGTCACCTTaGGCTCCGGCAGGGCTGGCG | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVWCWSP*APAGLA Trigger: CGCCAGCCCTGCCGGAGCCCAAGGTGACCAGCACCA...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCAAAGGACATCGCGGCTaGTTCCTACTCCGCTTCCTC | + |
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Preference number: 4 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIKGHRG*FLLRFL Trigger: GAGGAAGCGGAGTAGGAAGCAGCCGCGATGTCCTTT...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGTCCTCCTCCTCCTTGTaGCCTGGAAGGCAGCGGGCT | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVSSSSL*PGRQRA Trigger: AGCCCGCTGCCTTCCAGGGCACAAGGAGGAGGAGGA...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGGGCCAGGACTTTGCCTaGTGTCTGGCGGAGGAGTGG | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVGQDFA*CLAEEW Trigger: CCACTCCTCCGCCAGACAGCAGGCAAAGTCCTGGCC...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGCACCAGAGCGTTCACTaGGGCTGTCTTCCTGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVHQSVH*GCLPGS Trigger: GGACCCAGGAAGACAGCCCCAGTGAACGCTCTGGTG...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGTCCATCGGGGCTTGCTaGGTCAGGCATGGCGTACAG | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVSIGAC*VRHGVQ Trigger: CTGTACGCCATGCCTGACCCAGCAAGCCCCGATGGA...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGTGTCTGGCGGAGGAGTaGCAGCGTAAGCAGCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVCLAEE*QRKQQP Trigger: AGGCTGCTGCTTACGCTGCCACTCCTCCGCCAGACA...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGCAAAGGGTCCACCTCTaGCCGCCGTTTGTACTTCTG | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVQRVHL*PPFVLL Trigger: CAGAAGTACAAACGGCGGCCAGAGGTGGACCCTTTG...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGACTGTCAGGACTGGCTaGCTCTGCCTTGATGTAGAG | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVTVRTG*LCLDVE Trigger: CTCTACATCAAGGCAGAGCCAGCCAGTCCTGACAGT...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR GCA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGTCAGCATCTTCAATGTaGACAGAGTCAGAATTGGCA | + |
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Preference number: 4 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVSASSM*TESELA Trigger: TGCCAATTCTGACTCTGTGCACATTGAAGATGCTGA...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CAA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTACCTCTGGCCGCCGTTaGTACTTCTGCCGTCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: PLGLTPYAGQILPATPPCTSGRR*YFCRPP Trigger: CGGCGGACGGCAGAAGTACAAACGGCGGCCAGAGGT...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CAA 90 bp | CTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCGGTGTCCATCGGGGCTaGCTGGGTCAGGCATGGCGT | + |
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Preference number: 5 (lower is better) Translates to: LCPFGANTLCWADPASHPGVHRG*LGQAWR Trigger: ACGCCATGCCTGACCCAGCAAGCCCCGATGGACACC...GGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CAA 90 bp | CCTTTGGGGCTAACACCCTATGCTGGGCAGATCCTGCCAGCCACCCCACCCTGTGGTGTCCATCGGGGCTaGCTGGGTCAGGCATGGCGT | + |
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Preference number: 5 (lower is better) Translates to: PLGLTPYAGQILPATPPCGVHRG*LGQAWR Trigger: ACGCCATGCCTGACCCAGCAAGCCCCGATGGACACC...ACAGGGTGGGGTGGCTGGCAGGATCTGCCCAGCATAGGGTGTTAGCCCCAAAGG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CAA 90 bp | TGCCCAGACTCCAGCTTTGCCCCTTTGGGGCTAACACCCTATGCTGGGCAGATCATGGTGCTGGTCACCTaGGGCTCCGGCAGGGCTGGC | + |
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Preference number: 5 (lower is better) Translates to: CPDSSFAPLGLTPYAGQIMVLVT*GSGRAG Trigger: GCCAGCCCTGCCGGAGCCCAAGGTGACCAGCACCAT...GATCTGCCCAGCATAGGGTGTTAGCCCCAAAGGGGCAAAGCTGGAGTCTGGGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS-3UTR CAA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGACCTCTGGCCGCCGTTaGTACTTCTGCCGTCCGCCG | + |
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Preference number: 5 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVTSGRR*YFCRPP Trigger: CGGCGGACGGCAGAAGTACAAACGGCGGCCAGAGGT...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS-3UTR CAA 90 bp | ACACCTGGGCATTCACTTTCCTGGCTTCTGACAATCCCCCACACACACAAAGTGGGTGTCCATCGGGGCTaGCTGGGTCAGGCATGGCGT | + |
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Preference number: 5 (lower is better) Translates to: TPGHSLSWLLTIPHTHKVGVHRG*LGQAWR Trigger: ACGCCATGCCTGACCCAGCAAGCCCCGATGGACACC...CACTTTGTGTGTGTGGGGGATTGTCAGAAGCCAGGAAAGTGAATGCCCAGGTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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| CDS CCA 72 bp | GGACATGGTGCTGGTCACCTTGGGCTCCGGCAGGGCTaGCGGGCAGGCATGGGGGCCGAGCGGCCCGGAGCG | + |
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Preference number: 6 (lower is better) Translates to: GHGAGHLGLRQG*RAGMGAERPGA Trigger: CGCTCCGGGCCGCTCGGCCCCCATGCCTGCCCGCCAGCCCTGCCGGAGCCCAAGGTGACCAGCACCATGTCC 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000239322.2 |
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| CDS CCA 72 bp | CTCCTCCTTGTGCCCTGGAAGGCAGCGGGCTGGAGCTaGACCAGAGGCCAGGGTCACCGGGGGTTCAGTCTC | + |
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Preference number: 6 (lower is better) Translates to: LLLVPWKAAGWS*TRGQGHRGFSL Trigger: GAGACTGAACCCCCGGTGACCCTGGCCTCTGGTCCAGCTCCAGCCCGCTGCCTTCCAGGGCACAAGGAGGAG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000025906.12 ENSMUST00000172975.3 ENSMUST00000239322.2 |
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