RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ESR2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021055

Ensembl transcript IDs: ENSMUST00000076634.5, ENSMUST00000101291.11, ENSMUST00000110421.9, ENSMUST00000133564.9, ENSMUST00000218621.2

Found 385 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GTAATCATCCGCCTCCAGCCTGGCCGTCACTGTGACTGGAGGTTCTaGGAGCCCTCTTTGCTCTTACTGTCCTCTGTCGAGCAGCACTCA +
Preference number: 1 (lower is better)
Translates to: VIIRLQPGRHCDWRF*EPSLLLLSSVEQHS
Trigger: TGAGTGCTGCTCGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACAGTGACGGCCAGGCTGGAGGCGGATGATTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 90 bp ACCATCATTGTAATCATCCGCCTCCAGCCTGGCCGTCACTGTGACTaGAGGTTCTGGGAGCCCTCTTTGCTCTTACTGTCCTCTGTCGAG +
Preference number: 1 (lower is better)
Translates to: TIIVIIRLQPGRHCD*RFWEPSLLLLSSVE
Trigger: CTCGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACAGTGACGGCCAGGCTGGAGGCGGATGATTACAATGATGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR TCA 90 bp TCTGACCATCATTGTAATCATCCGCCTCCAGCCTGGCCGTCACTGTaGCTGGAGGTTCTGGGAGCCCTCTTTGCTCTTACTGTCCTCTGT +
Preference number: 1 (lower is better)
Translates to: SDHHCNHPPPAWPSL*LEVLGALFALTVLC
Trigger: ACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACAGTGACGGCCAGGCTGGAGGCGGATGATTACAATGATGGTCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR TCA 90 bp TTTGCTCTTACTGTCCTCTGTCGAGCAGCACTCAGACCCCGAGATTaGGGACTTGTACCCTCGAAGCGTGTGAGCATTCAGCATCTCCAG +
Preference number: 1 (lower is better)
Translates to: FALTVLCRAALRPRD*GLVPSKRVSIQHLQ
Trigger: CTGGAGATGCTGAATGCTCACACGCTTCGAGGGTACAAGTCCTCAATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAGTAAGAGCAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 90 bp GAGGAAGTGTGTCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTaGCTGCCTGTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGA +
Preference number: 1 (lower is better)
Translates to: EEVCHCVDGLLRASS*LPVEDKANLLAAFR
Trigger: TCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGACACACTTCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CCA 90 bp ACTGCGTTCAATAGGTGTGTCAGCTTCCGGCTACTCTCTGCTTCCTaGCTTGCGGTAGCCAAGGGGTACATACTGGAGTTGAGGAGAATC +
Preference number: 1 (lower is better)
Translates to: TAFNRCVSFRLLSAS*LAVAKGYILELRRI
Trigger: GATTCTCCTCAACTCCAGTATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAGCTGACACACCTATTGAACGCAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR TCA 90 bp GTATGGCCTTATTGGAGGAAGTGTGTCACTGTGTCGATGGGCTTTTaGGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAATCTTC +
Preference number: 1 (lower is better)
Translates to: VWPYWRKCVTVSMGF*ELPPGCLWKTKPIF
Trigger: GAAGATTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGACACACTTCCTCCAATAAGGCCATAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR TCA 90 bp CTCCCAGCAACCACATGGTGGCTCATAACCATCTATAATGGGATCTaGTGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCA +
Preference number: 1 (lower is better)
Translates to: LPATTWWLITIYNGI*CPLLVCLKTATMHS
Trigger: TGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTATAGATGGTTATGAGCCACCATGTGGTTGCTGGGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CAA 90 bp CTCCAGCCTGGCCGTCACTGTGACTGGAGGTTCTGGGAGCCCTCTTaGCTCTTACTGTCCTCTGTCGAGCAGCACTCAGACCCCGAGATT +
Preference number: 2 (lower is better)
Translates to: LQPGRHCDWRFWEPS*LLLSSVEQHSDPEI
Trigger: AATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACAGTGACGGCCAGGCTGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR TCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGACAACCCAACCACCCTaGCTCCTGGGAAGCGCAACG +
Preference number: 2 (lower is better)
Translates to: AFSSTTSSGCGQASGHNETTQPP*LLGSAT
Trigger: CGTTGCGCTTCCCAGGAGTCAGGGTGGTTGGGTTGT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCGAGTTGCCTTGGGGCTaGAGAGATGTCTCAGCAGTT +
Preference number: 2 (lower is better)
Translates to: FSAPSPAPHLLDAARLLAELPWG*RDVSAV
Trigger: AACTGCTGAGACATCTCTCCAGCCCCAAGGCAACTC...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATGGAAGACACACTATaGAGGCCTGAAGCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: FSAPSPAPHLLDAARLLAMEDTL*RPEAVC
Trigger: ACACACAGCTTCAGGCCTTCATAGTGTGTCTTCCAT...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAGTTGGCCAGACGGACTaGCTGCTGCTGGGAAGAGAT +
Preference number: 2 (lower is better)
Translates to: SLCRWAFESFLLAACGRQVGQTD*LLLGRD
Trigger: ATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAAC...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR TCA 90 bp CCCTCTTTGCTCTTACTGTCCTCTGTCGAGCAGCACTCAGACCCCGAGATTGAGTACCCTCGAAGCGTGTaGGCATTCAGCATCTCCAGC +
Preference number: 2 (lower is better)
Translates to: PSLLLLSSVEQHSDPEIEYPRSV*AFSISS
Trigger: GCTGGAGATGCTGAATGCTCACACGCTTCGAGGGTA...CTCAATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAGTAAGAGCAAAGAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGTTCAGCAGTAAGTCCTaGTACAGGGGACACCACAAC +
Preference number: 2 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEFSSKS*YRGHHN
Trigger: GTTGTGGTGTCCCCTGTACCAGGACTTACTGCTGAA...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTGAGTTGCCTTGGGGCTaGAGAGATGTCTCAGCAGTT +
Preference number: 2 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAELPWG*RDVSAV
Trigger: AACTGCTGAGACATCTCTCCAGCCCCAAGGCAACTC...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CAA 90 bp CTTTGCTCTTACTGTCCTCTGTCGAGCAGCACTCAGACCCCGAGATaGAGGACTTGTACCCTCGAAGCGTGTGAGCATTCAGCATCTCCA +
Preference number: 2 (lower is better)
Translates to: LCSYCPLSSSTQTPR*RTCTLEACEHSASP
Trigger: TGGAGATGCTGAATGCTCACACGCTTCGAGGGTACAAGTCCTCAATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAGTAAGAGCAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR TCA 90 bp TGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATACAACCCAACCACCCTaGCTCCTGGGAAGCGCAACG +
Preference number: 2 (lower is better)
Translates to: WLPSDQNVEFSAPSPAPHTTQPP*LLGSAT
Trigger: CGTTGCGCTTCCCAGGAGTCAGGGTGGTTGGGTTGT...ATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTACAACCCAACCACCCTaGCTCCTGGGAAGCGCAACG +
Preference number: 2 (lower is better)
Translates to: SYRRCIASLSFSCPRPILTTQPP*LLGSAT
Trigger: CGTTGCGCTTCCCAGGAGTCAGGGTGGTTGGGTTGT...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAGTCCTCACAGGCCTGTaGGGTAGGAATGCGAAACGA +
Preference number: 2 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIVLTGL*GRNAKR
Trigger: TCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGAC...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAATGTGACTGGAGGTTCTaGGAGCCCTCTTTGCTCTTA +
Preference number: 2 (lower is better)
Translates to: CRWAFESFLLAACGRQSQCDWRF*EPSLLL
Trigger: TAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACA...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CAA 90 bp GGTATGGCCTTATTGGAGGAAGTGTGTCACTGTGTCGATGGGCTTTaGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAATCTT +
Preference number: 2 (lower is better)
Translates to: GMALLEEVCHCVDGL*RASSWLPVEDKANL
Trigger: AAGATTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGACACACTTCCTCCAATAAGGCCATACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CAA 90 bp CTCTCTGCTTCCTGGCTTGCGGTAGCCAAGGGGTACATACTGGAGTaGAGGAGAATCATGGCCTTCACACACAGATATTCTTTGTGCTGC +
Preference number: 2 (lower is better)
Translates to: LSASWLAVAKGYILE*RRIMAFTHRYSLCC
Trigger: GCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAACTCCAGTATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR TCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTACAACCCAACCACCCTaGCTCCTGGGAAGCGCAACG +
Preference number: 2 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSTTQPP*LLGSAT
Trigger: CGTTGCGCTTCCCAGGAGTCAGGGTGGTTGGGTTGT...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR GCA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTTGTTCTTTAAAGAGTTaGCTTGGGGCTGGAGAGATG +
Preference number: 2 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTCSLKS*LGAGEM
Trigger: CATCTCTCCAGCCCCAAGGCAACTCTTTAAAGAACA...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTAAGTGGGCAAAGAGATaGAAAGTACAACGAGAGCCT +
Preference number: 2 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAKWAKR*KVQREP
Trigger: AGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTT...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTATCGCTTCACAGCAATaGAAGACACACTATGAAGGC +
Preference number: 2 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAIASQQ*KTHYEG
Trigger: GCCTTCATAGTGTGTCTTCCATTGCTGTGAAGCGAT...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTTTTAAAGAGTTGCCTTaGGGCTGGAGAGATGTCTCA +
Preference number: 2 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTFKELP*GWRDVS
Trigger: TGAGACATCTCTCCAGCCCCAAGGCAACTCTTTAAA...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATACACACTATGAAGGCCTaGAGCTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIHTMKA*SCVCVC
Trigger: ACACACACACACACAGCTTCAGGCCTTCATAGTGTG...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAATCGCTTCACAGCAATaGAAGACACACTATGAAGGC +
Preference number: 2 (lower is better)
Translates to: SLCRWAFESFLLAACGRQIASQQ*KTHYEG
Trigger: GCCTTCATAGTGTGTCTTCCATTGCTGTGAAGCGAT...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGACAGCACCACATCTTCTaGATGCGGCCAGGCTTCTGG +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGQHHIF*MRPGFW
Trigger: CCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTG...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCGTCCTCACAGGCCTGTaGGGTAGGAATGCGAAACGA +
Preference number: 2 (lower is better)
Translates to: KANLLAAFRSKCRILSAFVLTGL*GRNAKR
Trigger: TCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGAC...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAGTCCTCACAGGCCTGTaGGGTAGGAATGCGAAACGA +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGVLTGL*GRNAKR
Trigger: TCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGAC...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR GCA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCACCACATCTTCTGGATaGGGCCAGGCTTCTGGCCAT +
Preference number: 2 (lower is better)
Translates to: KANLLAAFRSKCRILSAFTTSSG*GQASGH
Trigger: ATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGT...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR GCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCCGGCTACTCTCTaGTTCCTGGCTTGCGGTAGC +
Preference number: 2 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESLPATL*FLACGS
Trigger: GCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAG...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGAAGATGTTTTCCAAGTaGGCAAAGAGATGGAAAGTA +
Preference number: 2 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEKMFSK*AKRWKV
Trigger: TACTTTCCATCTCTTTGCCCACTTGGAAAACATCTT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR GCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCTCTGCTTCCTGGCTTaGGGTAGCCAAGGGGTACAT +
Preference number: 2 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSALCFLA*GSQGVH
Trigger: ATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAG...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTTTCAGCAGTAAGTCCTaGTACAGGGGACACCACAAC +
Preference number: 2 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVFSSKS*YRGHHN
Trigger: GTTGTGGTGTCCCCTGTACCAGGACTTACTGCTGAA...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACATTCAGCAGTAAGTCCTaGTACAGGGGACACCACAAC +
Preference number: 2 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTFSSKS*YRGHHN
Trigger: GTTGTGGTGTCCCCTGTACCAGGACTTACTGCTGAA...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CAA 90 bp CGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTaGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGTGGTCTAGA +
Preference number: 2 (lower is better)
Translates to: RHESSQACEVGMRNE*IVNVVFSPTIKWSR
Trigger: TCTAGACCACTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCACACTATGAAGGCCTaGAGCTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSHTMKA*SCVCVC
Trigger: ACACACACACACACAGCTTCAGGCCTTCATAGTGTG...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCCACACTATGAAGGCCTaGAGCTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: KANLLAAFRSKCRILSAFHTMKA*SCVCVC
Trigger: ACACACACACACACAGCTTCAGGCCTTCATAGTGTG...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATTCAGCAGTAAGTCCTaGTACAGGGGACACCACAAC +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGFSSKS*YRGHHN
Trigger: GTTGTGGTGTCCCCTGTACCAGGACTTACTGCTGAA...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCGAGTTGCCTTGGGGCTaGAGAGATGTCTCAGCAGTT +
Preference number: 2 (lower is better)
Translates to: VEDKANLLAAFRSKCRILELPWG*RDVSAV
Trigger: AACTGCTGAGACATCTCTCCAGCCCCAAGGCAACTC...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCACACTATGAAGGCCTaGAGCTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAHTMKA*SCVCVC
Trigger: ACACACACACACACAGCTTCAGGCCTTCATAGTGTG...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCATGGAAGACACACTATaGAGGCCTGAAGCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: KANLLAAFRSKCRILSAFMEDTL*RPEAVC
Trigger: ACACACAGCTTCAGGCCTTCATAGTGTGTCTTCCAT...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTATGGAAGACACACTATaGAGGCCTGAAGCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSMEDTL*RPEAVC
Trigger: ACACACAGCTTCAGGCCTTCATAGTGTGTCTTCCAT...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCTTCAGCAGTAAGTCCTaGTACAGGGGACACCACAAC +
Preference number: 2 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESFSSKS*YRGHHN
Trigger: GTTGTGGTGTCCCCTGTACCAGGACTTACTGCTGAA...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTAAGTGGGCAAAGAGATaGAAAGTACAACGAGAGCCT +
Preference number: 2 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVKWAKR*KVQREP
Trigger: AGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTT...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCAAGTGGGCAAAGAGATaGAAAGTACAACGAGAGCCT +
Preference number: 2 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTKWAKR*KVQREP
Trigger: AGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTT...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAGGTCACATCCAAGCTTaGCCATTATCTTCTTGGTCT +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGGHIQA*PLSSWS
Trigger: AGACCAAGAAGATAATGGTCAAGCTTGGATGTGACC...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR GCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGTTCTTTAAAGAGTTaGCTTGGGGCTGGAGAGATG +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGCSLKS*LGAGEM
Trigger: CATCTCTCCAGCCCCAAGGCAACTCTTTAAAGAACA...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTAAGTGGGCAAAGAGATaGAAAGTACAACGAGAGCCT +
Preference number: 2 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLKWAKR*KVQREP
Trigger: AGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTT...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAAAGATGTTTTCCAAGTaGGCAAAGAGATGGAAAGTA +
Preference number: 2 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIKMFSK*AKRWKV
Trigger: TACTTTCCATCTCTTTGCCCACTTGGAAAACATCTT...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGAAGATGTTTTCCAAGTaGGCAAAGAGATGGAAAGTA +
Preference number: 2 (lower is better)
Translates to: ITRHESSQACEVGMRNELKMFSK*AKRWKV
Trigger: TACTTTCCATCTCTTTGCCCACTTGGAAAACATCTT...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATTTAAAGAGTTGCCTTaGGGCTGGAGAGATGTCTCA +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGFKELP*GWRDVS
Trigger: TGAGACATCTCTCCAGCCCCAAGGCAACTCTTTAAA...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCGGTCACATCCAAGCTTaGCCATTATCTTCTTGGTCT +
Preference number: 2 (lower is better)
Translates to: VEDKANLLAAFRSKCRILGHIQA*PLSSWS
Trigger: AGACCAAGAAGATAATGGTCAAGCTTGGATGTGACC...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGGGTACATACTGGAGTTaGGGAGAATCATGGCCTTCA +
Preference number: 2 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKGTYWS*GESWPS
Trigger: TGAAGGCCATGATTCTCCTCAACTCCAGTATGTACC...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTACAAAGCCAATCTTCTaGCTGCCTTCAGATCAAAAT +
Preference number: 2 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVTKPIF*LPSDQN
Trigger: ATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGT...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CAA 90 bp AGGAAGAAAGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTaGACCATTATCTTCTTGGTCTTTGATACAATAACCCATTACACG +
Preference number: 2 (lower is better)
Translates to: RKKEDLGGGTRSHPS*TIIFLVFDTITHYT
Trigger: CGTGTAATGGGTTATTGTATCAAAGACCAAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCTTTCTTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTAAGATGTTTTCCAAGTaGGCAAAGAGATGGAAAGTA +
Preference number: 2 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVKMFSK*AKRWKV
Trigger: TACTTTCCATCTCTTTGCCCACTTGGAAAACATCTT...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAAGTCCTACAATCAAGTaGTCTAGAAGACACCATTCA +
Preference number: 2 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGSPTIK*SRRHHS
Trigger: TGAATGGTGTCTTCTAGACCACTTGATTGTAGGACT...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAAGTGGGCAAAGAGATaGAAAGTACAACGAGAGCCT +
Preference number: 2 (lower is better)
Translates to: QRDGKYNESLLRLYKLELKWAKR*KVQREP
Trigger: AGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTT...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR TCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCTTCCAAGTCAGACTTTaGCCTTTTCATTCCAGAACT +
Preference number: 2 (lower is better)
Translates to: QRDGKYNESLLRLYKLELFQVRL*PFHSRT
Trigger: AGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAA...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGTCCTACAATCAAGTaGTCTAGAAGACACCATTCA +
Preference number: 2 (lower is better)
Translates to: QRDGKYNESLLRLYKLELSPTIK*SRRHHS
Trigger: TGAATGGTGTCTTCTAGACCACTTGATTGTAGGACT...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR TCA 72 bp ACTGTCCTCTGTCGAGCAGCACTCAGACCCCGAGATTaGGGACTTGTACCCTCGAAGCGTGTGAGCATTCAG +
Preference number: 3 (lower is better)
Translates to: TVLCRAALRPRD*GLVPSKRVSIQ
Trigger: CTGAATGCTCACACGCTTCGAGGGTACAAGTCCTCAATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 72 bp AGCATCAGGAGGTTGGCCAGACGGACTGACTGCTGCTaGGAAGAGATTCCACTCTTCGAAATCACCCAGACC +
Preference number: 3 (lower is better)
Translates to: SIRRLARRTDCC*EEIPLFEITQT
Trigger: GGTCTGGGTGATTTCGAAGAGTGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 72 bp AATAGGTGTGTCAGCTTCCGGCTACTCTCTGCTTCCTaGCTTGCGGTAGCCAAGGGGTACATACTGGAGTTG +
Preference number: 3 (lower is better)
Translates to: NRCVSFRLLSAS*LAVAKGYILEL
Trigger: CAACTCCAGTATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAGCTGACACACCTATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR CAA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCCTTCCAAGTCAGACTTaGACCTTTTCATTCCAGAAC +
Preference number: 3 (lower is better)
Translates to: FSAPSPAPHLLDAARLLALPSQT*TFSFQN
Trigger: GTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAG...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCGGGTACATACTGGAGTaGAGGAGAATCATGGCCTTC +
Preference number: 3 (lower is better)
Translates to: LCRWAFESFLLAACGRQSGYILE*RRIMAF
Trigger: GAAGGCCATGATTCTCCTCAACTCCAGTATGTACCC...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR GCA 72 bp GAAAGAAGCATCAGGAGGTTGGCCAGACGGACTGACTaGTGCTGGGAAGAGATTCCACTCTTCGAAATCACC +
Preference number: 3 (lower is better)
Translates to: ERSIRRLARRTD*CWEEIPLFEIT
Trigger: GGTGATTTCGAAGAGTGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 72 bp TATGGCCTTATTGGAGGAAGTGTGTCACTGTGTCGATaGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGA +
Preference number: 3 (lower is better)
Translates to: YGLIGGSVSLCR*AFESFLLAACG
Trigger: TCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGACACACTTCCTCCAATAAGGCCATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGTTGTTCTTTAAAGAGTaGCCTTGGGGCTGGAGAGAT +
Preference number: 3 (lower is better)
Translates to: AFSSTTSSGCGQASGHNELFFKE*PWGWRD
Trigger: ATCTCTCCAGCCCCAAGGCAACTCTTTAAAGAACAA...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAAACCGGGACCACATTTTaGCACTTCATGCTGAGCAGA +
Preference number: 3 (lower is better)
Translates to: CRWAFESFLLAACGRQSQTGTTF*HFMLSR
Trigger: TCTGCTCAGCATGAAGTGCAAAAATGTGGTCCCGGT...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR TCA 72 bp TATTGGAGGAAGTGTGTCACTGTGTCGATGGGCTTTTaGGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAG +
Preference number: 3 (lower is better)
Translates to: YWRKCVTVSMGF*ELPPGCLWKTK
Trigger: CTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGACACACTTCCTCCAATA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTCTTCCAAGTCAGACTTaGACCTTTTCATTCCAGAAC +
Preference number: 3 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTLPSQT*TFSFQN
Trigger: GTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAG...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR TCA 72 bp TCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTaGACCTCTGAAACTGTAAGCCAGCCCCAATTAAAT +
Preference number: 3 (lower is better)
Translates to: SGCGQASGHNED*TSETVSQPQLN
Trigger: ATTTAATTGGGGCTGGCTTACAGTTTCAGAGGTTCAGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR TCA 72 bp AGATGTTCCATGCCCTTGTTACTGATGTGCCTGACATaGGAAAGAAGCATCAGGAGGTTGGCCAGACGGACT +
Preference number: 3 (lower is better)
Translates to: RCSMPLLLMCLT*ERSIRRLARRT
Trigger: AGTCCGTCTGGCCAACCTCCTGATGCTTCTTTCTCATGTCAGGCACATCAGTAACAAGGGCATGGAACATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 72 bp CCTCCTGGCTGCCTGTGGAAGACAAAGCCAATCTTCTaGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCG +
Preference number: 3 (lower is better)
Translates to: PPGCLWKTKPIF*LPSDQNVEFSA
Trigger: CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCACAGGCAGCCAGGAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp TGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATAGATGTTCCATGCCCTaGTTACTGATGTGCCTGACA +
Preference number: 3 (lower is better)
Translates to: WLPSDQNVEFSAPSPAPHRCSMP*LLMCLT
Trigger: TGTCAGGCACATCAGTAACAAGGGCATGGAACATCT...ATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR-3UTR CAA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGAAGCATCAGGAGGTaGGCCAGACGGACTGACTGC +
Preference number: 3 (lower is better)
Translates to: QRDGKYNESLLRLYKLELRSIRR*ARRTDC
Trigger: GCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCT...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
3UTR CCA 72 bp GTTCAAGTGCATGGTGGTTTGAATATGCTTGGCCCATaGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTA +
Preference number: 3 (lower is better)
Translates to: VQVHGGLNMLGP*EVALLRGMALL
Trigger: TAACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAACCACCATGCACTTGAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CCA 72 bp TTAATGTGTTCAAGTGCATGGTGGTTTGAATATGCTTaGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGC +
Preference number: 3 (lower is better)
Translates to: LMCSSAWWFEYA*PMGSGTLKRYG
Trigger: GCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAACCACCATGCACTTGAACACATTAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
3UTR-3UTR CAA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCATAGGTATGGCCTTATaGGAGGAAGTGTGTCACTGT +
Preference number: 3 (lower is better)
Translates to: KANLLAAFRSKCRILSAFIGMAL*EEVCHC
Trigger: ACAGTGACACACTTCCTCCAATAAGGCCATACCTAT...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTCTTCCAAGTCAGACTTaGACCTTTTCATTCCAGAAC +
Preference number: 3 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLLPSQT*TFSFQN
Trigger: GTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAG...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR-3UTR CAA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCTTCCAAGTCAGACTTaGACCTTTTCATTCCAGAAC +
Preference number: 3 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSALPSQT*TFSFQN
Trigger: GTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAG...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR TCA 72 bp GTCACATCCAAGCTTGACCATTATCTTCTTGGTCTTTaGTACAATAACCCATTACACGTCATGAGTCCTCAC +
Preference number: 3 (lower is better)
Translates to: VTSKLDHYLLGL*YNNPLHVMSPH
Trigger: GTGAGGACTCATGACGTGTAATGGGTTATTGTATCAAAGACCAAGAAGATAATGGTCAAGCTTGGATGTGAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CCA 72 bp AGAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATaGAAAGTACAACGAGAGCCTTCTAAGGTTATACAA +
Preference number: 3 (lower is better)
Translates to: RTLKMFSKWAKR*KVQREPSKVIQ
Trigger: TTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CCA 72 bp TTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGTaGTCTAGAAGACACCATTCAAAGGTCGATTTGATG +
Preference number: 3 (lower is better)
Translates to: LIVNVVFSPTIK*SRRHHSKVDLM
Trigger: CATCAAATCGACCTTTGAATGGTGTCTTCTAGACCACTTGATTGTAGGACTGAAAACCACATTGACAATCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCGGTCTGGAGCAAAGATaGGCTTGCCGGGGTGGTCGA +
Preference number: 4 (lower is better)
Translates to: FSAPSPAPHLLDAARLLAGLEQR*ACRGGR
Trigger: TCGACCACCCCGGCAAGCTCATCTTTGCTCCAGACC...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCATGGAGGCCTCGGTaGAGGGCATGCTGGGACGGC +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQASWRPR*RACWDG
Trigger: GCCGTCCCAGCATGCCCTTCACCGAGGCCTCCATGA...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCTCATGGAGGCCTCGGTaGAGGGCATGCTGGGACGGC +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSSWRPR*RACWDG
Trigger: GCCGTCCCAGCATGCCCTTCACCGAGGCCTCCATGA...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTTGCCGGGGTGGTCGATaGAGCGCCACATCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTCRGGR*SATSAP
Trigger: TGGGGCTGATGTGGCGCTCCATCGACCACCCCGGCA...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGCAGACGGCGCAGAAGTaGGCATCCCTCTTGGCGCTT +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEQTAQK*ASLLAL
Trigger: AAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTG...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GACTGCTGCTGGGAAGAGATTCCACTCTTCGAAATCACCCAGACCAGGGCATCTTCATGGAGGCCTCGGTaGAGGGCATGCTGGGACGGC +
Preference number: 4 (lower is better)
Translates to: DCCWEEIPLFEITQTRASSWRPR*RACWDG
Trigger: GCCGTCCCAGCATGCCCTTCACCGAGGCCTCCATGA...AGATGCCCTGGTCTGGGTGATTTCGAAGAGTGGAATCTCTTCCCAGCAGCAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS-3UTR GCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCCTCTGCTTCCTGGCTTaGGGTAGCCAAGGGGTACAT +
Preference number: 4 (lower is better)
Translates to: FSAPSPAPHLLDAARLLALCFLA*GSQGVH
Trigger: ATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAG...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGCGAAGTCGGCAGGCCTaGCAGCTTTTACGCCGGTTC +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNERSRQA*QLLRRF
Trigger: GAACCGGCGTAAAAGCTGCCAGGCCTGCCGACTTCG...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGATGAGCTTGCCGGGGTaGTCGATGGAGCGCCACATC +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEMSLPG*SMERHI
Trigger: GATGTGGCGCTCCATCGACCACCCCGGCAAGCTCAT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CCAGGGCATCTGTCACTGCGTTCAATAGGTGTGTCAGCTTCCGGCTACTCTCTGCAGACGGCGCAGAAGTaGGCATCCCTCTTGGCGCTT +
Preference number: 4 (lower is better)
Translates to: PGHLSLRSIGVSASGYSLQTAQK*ASLLAL
Trigger: AAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTG...CAGAGAGTAGCCGGAAGCTGACACACCTATTGAACGCAGTGACAGATGCCCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS-3UTR CCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCATGAGCTTGCCGGGGTaGTCGATGGAGCGCCACATC +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSMSLPG*SMERHI
Trigger: GATGTGGCGCTCCATCGACCACCCCGGCAAGCTCAT...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAACAGACGGCGCAGAAGTaGGCATCCCTCTTGGCGCTT +
Preference number: 4 (lower is better)
Translates to: CRWAFESFLLAACGRQSQQTAQK*ASLLAL
Trigger: AAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTG...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTCTTGGTCCAACAGGCTaGGCTCCACAAAGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQALGPTG*APQSQG
Trigger: TCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAG...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCCAGTGAGGGTCTTCTaGGGACCTGTCCAGAACGAG +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSPVRVF*GPVQNE
Trigger: CTCGTTCTGGACAGGTCCTCAGAAGACCCTCACTGG...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCTTCACCCGGGGTGTGTaGCCACTGGTTCTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSFTRGV*PLVLLA
Trigger: AGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAA...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTTCACCCGGGGTGTGTaGCCACTGGTTCTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAFTRGV*PLVLLA
Trigger: AGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAA...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEIPLGA*TSNRAG
Trigger: GCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGAT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCGCCGGTTCTTGTCTATaGTACACTGATTCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: FSAPSPAPHLLDAARLLAAGSCL*YTDSWL
Trigger: CAGCCACGAATCAGTGTACCATAGACAAGAACCGGC...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATATGCCGGGGTGGTCGATaGAGCGCCACATCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALICRGGR*SATSAP
Trigger: TGGGGCTGATGTGGCGCTCCATCGACCACCCCGGCA...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCTGTGACTGGAGGTTCTaGGAGCCCTCTTTGCTCTTA +
Preference number: 4 (lower is better)
Translates to: FSAPSPAPHLLDAARLLACDWRF*EPSLLL
Trigger: TAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACA...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCTGTCAGCCAGCTTCGTaGGGGACATCATCATGGAGG +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSCQPAS*GTSSWR
Trigger: CCTCCATGATGATGTCCCTCACGAAGCTGGCTGACA...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTACCCTCGAAGCGTGTaGGCATTCAGCATCTCCAGC +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAYPRSV*AFSISS
Trigger: GCTGGAGATGCTGAATGCTCACACGCTTCGAGGGTA...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: SLCRWAFESFLLAACGRQRVSTS*SGLREF
Trigger: GAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCT...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAACTTCCGGCTACTCTCTaGTTCCTGGCTTGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: CRWAFESFLLAACGRQSQLPATL*FLACGS
Trigger: GCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAG...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCGCCAGACGGACTGACTaGTGCTGGGAAGAGATTCCA +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSARRTD*CWEEIP
Trigger: TGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGC...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTGCCAGACGGACTGACTaGTGCTGGGAAGAGATTCCA +
Preference number: 4 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTARRTD*CWEEIP
Trigger: TGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGC...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGAGCGATGATTGGCAGTaGGTGGCTAAAGGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNESDDWQ*VAKGER
Trigger: CCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCTTGTCTATGGTACACTaGTTCGTGGCTGGACAGATA +
Preference number: 4 (lower is better)
Translates to: FSAPSPAPHLLDAARLLALSMVH*FVAGQI
Trigger: TATCTGTCCAGCCACGAATCAGTGTACCATAGACAA...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTTCATGGAGGCCTCGGTaGAGGGCATGCTGGGACGGC +
Preference number: 4 (lower is better)
Translates to: SYRRCIASLSFSCPRPILSWRPR*RACWDG
Trigger: GCCGTCCCAGCATGCCCTTCACCGAGGCCTCCATGA...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAAGCCAGACGGACTGACTaGTGCTGGGAAGAGATTCCA +
Preference number: 4 (lower is better)
Translates to: CRWAFESFLLAACGRQSQARRTD*CWEEIP
Trigger: TGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGC...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CAGACCAGGGCATCTGTCACTGCGTTCAATAGGTGTGTCAGCTTCCGGCTACTCAGCGATGATTGGCAGTaGGTGGCTAAAGGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: QTRASVTAFNRCVSFRLLSDDWQ*VAKGER
Trigger: CCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCT...GAGTAGCCGGAAGCTGACACACCTATTGAACGCAGTGACAGATGCCCTGGTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS-3UTR CCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGCGAAGTCGGCAGGCCTaGCAGCTTTTACGCCGGTTC +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELRSRQA*QLLRRF
Trigger: GAACCGGCGTAAAAGCTGCCAGGCCTGCCGACTTCG...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNENAPAR*HFSVFV
Trigger: TACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACATGCCGGGGTGGTCGATaGAGCGCCACATCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTCRGGR*SATSAP
Trigger: TGGGGCTGATGTGGCGCTCCATCGACCACCCCGGCA...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
3UTR CAA 72 bp TACTGTCCTCTGTCGAGCAGCACTCAGACCCCGAGATaGAGGACTTGTACCCTCGAAGCGTGTGAGCATTCA +
Preference number: 4 (lower is better)
Translates to: YCPLSSSTQTPR*RTCTLEACEHS
Trigger: TGAATGCTCACACGCTTCGAGGGTACAAGTCCTCAATCTCGGGGTCTGAGTGCTGCTCGACAGAGGACAGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS-3UTR TCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATACTTGGTCCAACAGGCTaGGCTCCACAAAGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALILGPTG*APQSQG
Trigger: TCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAG...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTCTGATGTGCCTGACATaGGAAAGAAGCATCAGGAGG +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQALMCLT*ERSIRR
Trigger: CCTCCTGATGCTTCTTTCTCATGTCAGGCACATCAG...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTCAGATGCATAATCACTaGAGACGGCGCAGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTQMHNH*RRRRSE
Trigger: CTCACTTCTGCGCCGTCTGCAGTGATTATGCATCTG...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATATTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCC +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIFGLAV*RTGPPS
Trigger: GGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAA...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTNAPAR*HFSVFV
Trigger: TACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATT...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCA +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAAHWFS*LCSGNA
Trigger: TGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGC...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAGGGGTGTGTGCCCACTaGTTCTCTTGGCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: SLCRWAFESFLLAACGRQGVCAH*FSWLCS
Trigger: TGAACAAAGCCAAGAGAACCAGTGGGCACACACCCC...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATATCCAAGAGGCGGACTTaGTCCAACAGGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALISKRRT*SNRLSS
Trigger: GGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGA...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTTGCCGGGGTGGTCGATaGAGCGCCACATCAGCCCCA +
Preference number: 4 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLCRGGR*SATSAP
Trigger: TGGGGCTGATGTGGCGCTCCATCGACCACCCCGGCA...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCTCATGGAGGCCTCGGTaGAGGGCATGCTGGGACGGC +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESSWRPR*RACWDG
Trigger: GCCGTCCCAGCATGCCCTTCACCGAGGCCTCCATGA...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACAGGTCTGGAGCAAAGATaGGCTTGCCGGGGTGGTCGA +
Preference number: 4 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTGLEQR*ACRGGR
Trigger: TCGACCACCCCGGCAAGCTCATCTTTGCTCCAGACC...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTGGTCTGGAGCAAAGATaGGCTTGCCGGGGTGGTCGA +
Preference number: 4 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVGLEQR*ACRGGR
Trigger: TCGACCACCCCGGCAAGCTCATCTTTGCTCCAGACC...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCGGTACATACTGGAGTTaGGGAGAATCATGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: LCRWAFESFLLAACGRQSGTYWS*GESWPS
Trigger: TGAAGGCCATGATTCTCCTCAACTCCAGTATGTACC...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCCGGCTACTCTCTaGTTCCTGGCTTGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: WLPSDQNVEFSAPSPAPHLPATL*FLACGS
Trigger: GCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAG...ATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACACGAAGTCGGCAGGCCTaGCAGCTTTTACGCCGGTTC +
Preference number: 4 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTRSRQA*QLLRRF
Trigger: GAACCGGCGTAAAAGCTGCCAGGCCTGCCGACTTCG...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GACTGCTGCTGGGAAGAGATTCCACTCTTCGAAATCACCCAGACCAGGGCATCTGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCA +
Preference number: 4 (lower is better)
Translates to: DCCWEEIPLFEITQTRASAHWFS*LCSGNA
Trigger: TGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGC...AGATGCCCTGGTCTGGGTGATTTCGAAGAGTGGAATCTCTTCCCAGCAGCAGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS-3UTR CCA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTATGAGCTTGCCGGGGTaGTCGATGGAGCGCCACATC +
Preference number: 4 (lower is better)
Translates to: SYRRCIASLSFSCPRPILMSLPG*SMERHI
Trigger: GATGTGGCGCTCCATCGACCACCCCGGCAAGCTCAT...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAGAAGCATCAGGAGGTTaGCCAGACGGACTGACTGCT +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIEASGG*PDGLTA
Trigger: AGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTC...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAATGTGACTGGAGGTTCTaGGAGCCCTCTTTGCTCTTA +
Preference number: 4 (lower is better)
Translates to: SLCRWAFESFLLAACGRQCDWRF*EPSLLL
Trigger: TAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACA...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTTGTCTATGGTACACTaGTTCGTGGCTGGACAGATA +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQALSMVH*FVAGQI
Trigger: TATCTGTCCAGCCACGAATCAGTGTACCATAGACAA...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTCTTGGTCCAACAGGCTaGGCTCCACAAAGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVLGPTG*APQSQG
Trigger: TCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAG...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTGGTCTGGAGCAAAGATaGGCTTGCCGGGGTGGTCGA +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSGLEQR*ACRGGR
Trigger: TCGACCACCCCGGCAAGCTCATCTTTGCTCCAGACC...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCGTTGGCCAGACGGACTaGCTGCTGCTGGGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTVGQTD*LLLGRD
Trigger: ATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAAC...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGCAACGTGCCAGTaGGGGTCTTCTGAGGACCTG +
Preference number: 4 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGCATCQ*GSSEDL
Trigger: CAGGTCCTCAGAAGACCCTCACTGGCACGTTGCGCA...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGCCAGGTTACCGGTGCTaGTGGGAACACTGTAGTTCA +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELPGYRC*WEHCSS
Trigger: TGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGG...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTRVSTS*SGLREF
Trigger: GAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCT...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATATCTGGGAGCCCTCTTTaGTCTTACTGTCCTCTGTCG +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALISGSPL*SYCPLS
Trigger: CGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGA...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCTTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCC +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTFGLAV*RTGPPS
Trigger: GGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAA...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTTTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCC +
Preference number: 4 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVFGLAV*RTGPPS
Trigger: GGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAA...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACATTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCC +
Preference number: 4 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTFGLAV*RTGPPS
Trigger: GGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAA...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGAGCGATGATTGGCAGTaGGTGGCTAAAGGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELSDDWQ*VAKGER
Trigger: CCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCT...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCTCCAAGAGGCGGACTTaGTCCAACAGGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTSKRRT*SNRLSS
Trigger: GGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGA...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCAGACGGCGCAGAAGTaGGCATCCCTCTTGGCGCTT +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAQTAQK*ASLLAL
Trigger: AAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTG...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAATTGTCTATGGTACACTaGTTCGTGGCTGGACAGATA +
Preference number: 4 (lower is better)
Translates to: SLCRWAFESFLLAACGRQLSMVH*FVAGQI
Trigger: TATCTGTCCAGCCACGAATCAGTGTACCATAGACAA...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTCTTGGTCCAACAGGCTaGGCTCCACAAAGCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLLGPTG*APQSQG
Trigger: TCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAG...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTGTTGGCCAGACGGACTaGCTGCTGCTGGGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSVGQTD*LLLGRD
Trigger: ATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAAC...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGTGCGCAACGTGCCAGTaGGGGTCTTCTGAGGACCTG +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSACATCQ*GSSEDL
Trigger: CAGGTCCTCAGAAGACCCTCACTGGCACGTTGCGCA...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGCAGATGCATAATCACTaGAGACGGCGCAGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELQMHNH*RRRRSE
Trigger: CTCACTTCTGCGCCGTCTGCAGTGATTATGCATCTG...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTTCACCCGGGGTGTGTaGCCACTGGTTCTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSFTRGV*PLVLLA
Trigger: AGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAA...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGRVSTS*SGLREF
Trigger: GAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCT...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCC +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSFGLAV*RTGPPS
Trigger: GGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAA...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGATGATTGGCAGTGGGTaGCTAAAGGAGAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELMIGSG*LKERGV
Trigger: GACACCTCTCTCCTTTAGCCACCCACTGCCAATCAT...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTIPLGA*TSNRAG
Trigger: GCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGAT...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGACACTGATTCGTGGCTaGACAGATATAGTCATTATG +
Preference number: 4 (lower is better)
Translates to: AFSSTTSSGCGQASGHNETLIRG*TDIVIM
Trigger: CATAATGACTATATCTGTCCAGCCACGAATCAGTGT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTGGTACACTGATTCGTaGCTGGACAGATATAGTCAT +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQAWYTDS*LDRYSH
Trigger: ATGACTATATCTGTCCAGCCACGAATCAGTGTACCA...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGGCCGGTTCTTGTCTATaGTACACTGATTCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELAGSCL*YTDSWL
Trigger: CAGCCACGAATCAGTGTACCATAGACAAGAACCGGC...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAGCCGGTTCTTGTCTATaGTACACTGATTCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIAGSCL*YTDSWL
Trigger: CAGCCACGAATCAGTGTACCATAGACAAGAACCGGC...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCGAAGTCGGCAGGCCTaGCAGCTTTTACGCCGGTTC +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESRSRQA*QLLRRF
Trigger: GAACCGGCGTAAAAGCTGCCAGGCCTGCCGACTTCG...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALINAPAR*HFSVFV
Trigger: TACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATT...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTCCAAGAGGCGGACTTaGTCCAACAGGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSSKRRT*SNRLSS
Trigger: GGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGA...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATATGTGACTGGAGGTTCTaGGAGCCCTCTTTGCTCTTA +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALICDWRF*EPSLLL
Trigger: TAAGAGCAAAGAGGGCTCCCAGAACCTCCAGTCACA...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
3UTR CAA 72 bp TTATTGGAGGAAGTGTGTCACTGTGTCGATGGGCTTTaGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAA +
Preference number: 4 (lower is better)
Translates to: LLEEVCHCVDGL*RASSWLPVEDK
Trigger: TTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGACACACTTCCTCCAATAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
3UTR CAA 72 bp TCCTGGCTTGCGGTAGCCAAGGGGTACATACTGGAGTaGAGGAGAATCATGGCCTTCACACACAGATATTCT +
Preference number: 4 (lower is better)
Translates to: SWLAVAKGYILE*RRIMAFTHRYS
Trigger: AGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAACTCCAGTATGTACCCCTTGGCTACCGCAAGCCAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS-3UTR TCA 90 bp AAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGCAGACGGCGCAGAAGTaGGCATCCCTCTTGGCGCTT +
Preference number: 4 (lower is better)
Translates to: KYNESLLRLYKLELSIQQQTAQK*ASLLAL
Trigger: AAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTG...CTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTTGTCAGCCAGCTTCGTaGGGGACATCATCATGGAGG +
Preference number: 4 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLCQPAS*GTSSWR
Trigger: CCTCCATGATGATGTCCCTCACGAAGCTGGCTGACA...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAGGTACATACTGGAGTTaGGGAGAATCATGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: WDLMPSSGVSEDSDNALIGTYWS*GESWPS
Trigger: TGAAGGCCATGATTCTCCTCAACTCCAGTATGTACC...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCGTTGGCCAGACGGACTaGCTGCTGCTGGGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: VEDKANLLAAFRSKCRILVGQTD*LLLGRD
Trigger: ATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAAC...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGGTTGGCCAGACGGACTaGCTGCTGCTGGGAAGAGAT +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAVGQTD*LLLGRD
Trigger: ATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGCCAAC...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCTTCACCCGGGGTGTGTaGCCACTGGTTCTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: VEDKANLLAAFRSKCRILFTRGV*PLVLLA
Trigger: AGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAA...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESRVSTS*SGLREF
Trigger: GAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCT...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGACTCTGCTTCCTGGCTTaGGGTAGCCAAGGGGTACAT +
Preference number: 4 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGLCFLA*GSQGVH
Trigger: ATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAG...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCTCTGCTTCCTGGCTTaGGGTAGCCAAGGGGTACAT +
Preference number: 4 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSLCFLA*GSQGVH
Trigger: ATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAG...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGCTCTGCTTCCTGGCTTaGGGTAGCCAAGGGGTACAT +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKLCFLA*GSQGVH
Trigger: ATGTACCCCTTGGCTACCGCAAGCCAGGAAGCAGAG...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCTTCCGGCTACTCTCTaGTTCCTGGCTTGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSALPATL*FLACGS
Trigger: GCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAG...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTGCCAGACGGACTGACTaGTGCTGGGAAGAGATTCCA +
Preference number: 4 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLARRTD*CWEEIP
Trigger: TGGAATCTCTTCCCAGCAGCAGTCAGTCCGTCTGGC...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCTCTGGGAGCCCTCTTTaGTCTTACTGTCCTCTGTCG +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTSGSPL*SYCPLS
Trigger: CGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGA...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSIPLGA*TSNRAG
Trigger: GCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGAT...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTACACTGATTCGTGGCTaGACAGATATAGTCATTATG +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQATLIRG*TDIVIM
Trigger: CATAATGACTATATCTGTCCAGCCACGAATCAGTGT...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGCGAAGTCGGCAGGCCTaGCAGCTTTTACGCCGGTTC +
Preference number: 4 (lower is better)
Translates to: KYNESLLRLYKLELSIQQRSRQA*QLLRRF
Trigger: GAACCGGCGTAAAAGCTGCCAGGCCTGCCGACTTCG...CTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCA +
Preference number: 4 (lower is better)
Translates to: WLPSDQNVEFSAPSPAPHAHWFS*LCSGNA
Trigger: TGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGC...ATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTGGGGTGTGTGCCCACTaGTTCTCTTGGCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVGVCAH*FSWLCS
Trigger: TGAACAAAGCCAAGAGAACCAGTGGGCACACACCCC...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCGGGGTGTGTGCCCACTaGTTCTCTTGGCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: VIQVRTQHSAVSPGTGDTGVCAH*FSWLCS
Trigger: TGAACAAAGCCAAGAGAACCAGTGGGCACACACCCC...GGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCTCCAAGAGGCGGACTTaGTCCAACAGGCTGAGCTCC +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESSKRRT*SNRLSS
Trigger: GGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGA...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTATGAGCTTGCCGGGGTaGTCGATGGAGCGCCACATC +
Preference number: 4 (lower is better)
Translates to: QREPSKVIQVRTQHSAVSMSLPG*SMERHI
Trigger: GATGTGGCGCTCCATCGACCACCCCGGCAAGCTCAT...ACTTACTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTGTCCAGAACGAGGTCTaGAGCAAAGATGAGCTTGCC +
Preference number: 4 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVVQNEV*SKDELA
Trigger: GGCAAGCTCATCTTTGCTCCAGACCTCGTTCTGGAC...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCGAAGCATCAGGAGGTTaGCCAGACGGACTGACTGCT +
Preference number: 4 (lower is better)
Translates to: KANLLAAFRSKCRILSAFEASGG*PDGLTA
Trigger: AGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTC...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGTGTCAGCCAGCTTCGTaGGGGACATCATCATGGAGG +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSACQPAS*GTSSWR
Trigger: CCTCCATGATGATGTCCCTCACGAAGCTGGCTGACA...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTCTGATGTGCCTGACATaGGAAAGAAGCATCAGGAGG +
Preference number: 4 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVLMCLT*ERSIRR
Trigger: CCTCCTGATGCTTCTTTCTCATGTCAGGCACATCAG...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTCTGATGTGCCTGACATaGGAAAGAAGCATCAGGAGG +
Preference number: 4 (lower is better)
Translates to: SYRRCIASLSFSCPRPILLMCLT*ERSIRR
Trigger: CCTCCTGATGCTTCTTTCTCATGTCAGGCACATCAG...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGTACCCTCGAAGCGTGTaGGCATTCAGCATCTCCAGC +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAYPRSV*AFSISS
Trigger: GCTGGAGATGCTGAATGCTCACACGCTTCGAGGGTA...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGTTCACCCGGGGTGTGTaGCCACTGGTTCTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKFTRGV*PLVLLA
Trigger: AGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAA...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTC +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKRVSTS*SGLREF
Trigger: GAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCT...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTAGATATTCTTTGTGCTaGAGTTTTAACTCACGGAAC +
Preference number: 4 (lower is better)
Translates to: CRILSAFSSTTSSGCGQARYSLC*SFNSRN
Trigger: GTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCT...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTCTGGGAGCCCTCTTTaGTCTTACTGTCCTCTGTCG +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKSGSPL*SYCPLS
Trigger: CGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGA...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESIPLGA*TSNRAG
Trigger: GCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGAT...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACAGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCA +
Preference number: 4 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTAHWFS*LCSGNA
Trigger: TGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGC...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTGGGGTGTGTGCCCACTaGTTCTCTTGGCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLGVCAH*FSWLCS
Trigger: TGAACAAAGCCAAGAGAACCAGTGGGCACACACCCC...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAGTCCAGAACGAGGTCTaGAGCAAAGATGAGCTTGCC +
Preference number: 4 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGVQNEV*SKDELA
Trigger: GGCAAGCTCATCTTTGCTCCAGACCTCGTTCTGGAC...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGGTCCAGAACGAGGTCTaGAGCAAAGATGAGCTTGCC +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKVQNEV*SKDELA
Trigger: GGCAAGCTCATCTTTGCTCCAGACCTCGTTCTGGAC...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGGAAGCATCAGGAGGTTaGCCAGACGGACTGACTGCT +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAEASGG*PDGLTA
Trigger: AGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTC...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCCCCTCATCCCTTaGGACAGCACTCTTCGTCTG +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESLPLIP*DSTLRL
Trigger: CAGACGAAGAGTGCTGTCCCAAGGGATGAGGGGAAG...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACAGGTACATACTGGAGTTaGGGAGAATCATGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTGTYWS*GESWPS
Trigger: TGAAGGCCATGATTCTCCTCAACTCCAGTATGTACC...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGCTGATGTGCCTGACATaGGAAAGAAGCATCAGGAGG +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKLMCLT*ERSIRR
Trigger: CCTCCTGATGCTTCTTTCTCATGTCAGGCACATCAG...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGTACCCTCGAAGCGTGTaGGCATTCAGCATCTCCAGC +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKYPRSV*AFSISS
Trigger: GCTGGAGATGCTGAATGCTCACACGCTTCGAGGGTA...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCCAGGTTACCGGTGCTaGTGGGAACACTGTAGTTCA +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESPGYRC*WEHCSS
Trigger: TGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGG...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCCAGGTTACCGGTaGTGCTGGGAACACTGTAGT +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESLPGYR*CWEHCS
Trigger: ACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAG...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCAGATGCATAATCACTaGAGACGGCGCAGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSQMHNH*RRRRSE
Trigger: CTCACTTCTGCGCCGTCTGCAGTGATTATGCATCTG...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAAAGATATTCTTTGTGCTaGAGTTTTAACTCACGGAAC +
Preference number: 4 (lower is better)
Translates to: CRWAFESFLLAACGRQSQRYSLC*SFNSRN
Trigger: GTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCT...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCCTTCCGGCTACTCTCTaGTTCCTGGCTTGCGGTAGC +
Preference number: 4 (lower is better)
Translates to: QRDGKYNESLLRLYKLELLPATL*FLACGS
Trigger: GCTACCGCAAGCCAGGAAGCAGAGAGTAGCCGGAAG...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTATGATTGGCAGTGGGTaGCTAAAGGAGAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSMIGSG*LKERGV
Trigger: GACACCTCTCTCCTTTAGCCACCCACTGCCAATCAT...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGATGATTGGCAGTGGGTaGCTAAAGGAGAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKMIGSG*LKERGV
Trigger: GACACCTCTCTCCTTTAGCCACCCACTGCCAATCAT...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGAGCGATGATTGGCAGTaGGTGGCTAAAGGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSASDDWQ*VAKGER
Trigger: CCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCT...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGTGGTACACTGATTCGTaGCTGGACAGATATAGTCAT +
Preference number: 4 (lower is better)
Translates to: ITRHESSQACEVGMRNELWYTDS*LDRYSH
Trigger: ATGACTATATCTGTCCAGCCACGAATCAGTGTACCA...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSNAPAR*HFSVFV
Trigger: TACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATT...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGGAAGCATCAGGAGGTTaGCCAGACGGACTGACTGCT +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKEASGG*PDGLTA
Trigger: AGCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTC...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCTTCCCCTCATCCCTTaGGACAGCACTCTTCGTCTG +
Preference number: 4 (lower is better)
Translates to: QREPSKVIQVRTQHSAVSLPLIP*DSTLRL
Trigger: CAGACGAAGAGTGCTGTCCCAAGGGATGAGGGGAAG...ACTTACTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGGGTACATACTGGAGTTaGGGAGAATCATGGCCTTCA +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKGTYWS*GESWPS
Trigger: TGAAGGCCATGATTCTCCTCAACTCCAGTATGTACC...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCTACCCTCGAAGCGTGTaGGCATTCAGCATCTCCAGC +
Preference number: 4 (lower is better)
Translates to: QRDGKYNESLLRLYKLELYPRSV*AFSISS
Trigger: GCTGGAGATGCTGAATGCTCACACGCTTCGAGGGTA...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGCCAGGTTACCGGTGCTaGTGGGAACACTGTAGTTCA +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKPGYRC*WEHCSS
Trigger: TGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGG...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGCTTCCAGGTTACCGGTaGTGCTGGGAACACTGTAGT +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKLPGYR*CWEHCS
Trigger: ACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAG...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCAGATGCATAATCACTaGAGACGGCGCAGAAGTGAG +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAQMHNH*RRRRSE
Trigger: CTCACTTCTGCGCCGTCTGCAGTGATTATGCATCTG...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGC +
Preference number: 4 (lower is better)
Translates to: QRDGKYNESLLRLYKLELIPLGA*TSNRAG
Trigger: GCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGAT...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGGCCGGTTCTTGTCTATaGTACACTGATTCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAAGSCL*YTDSWL
Trigger: CAGCCACGAATCAGTGTACCATAGACAAGAACCGGC...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCGCCGGTTCTTGTCTATaGTACACTGATTCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESAGSCL*YTDSWL
Trigger: CAGCCACGAATCAGTGTACCATAGACAAGAACCGGC...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTA +
Preference number: 4 (lower is better)
Translates to: VEDKANLLAAFRSKCRILNAPAR*HFSVFV
Trigger: TACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATT...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGGGGGTGTGTGCCCACTaGTTCTCTTGGCTTTGTTCA +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKGVCAH*FSWLCS
Trigger: TGAACAAAGCCAAGAGAACCAGTGGGCACACACCCC...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTGTCCAGAACGAGGTCTaGAGCAAAGATGAGCTTGCC +
Preference number: 4 (lower is better)
Translates to: QREPSKVIQVRTQHSAVSVQNEV*SKDELA
Trigger: GGCAAGCTCATCTTTGCTCCAGACCTCGTTCTGGAC...ACTTACTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
3UTR CAA 72 bp TCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTaGATTGTCAATGTGGTTTTCAGTCCTACAATCAAG +
Preference number: 4 (lower is better)
Translates to: SSQACEVGMRNE*IVNVVFSPTIK
Trigger: CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTTGTCTATGGTACACTaGTTCGTGGCTGGACAGATA +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSLSMVH*FVAGQI
Trigger: TATCTGTCCAGCCACGAATCAGTGTACCATAGACAA...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTCCAGTGAGGGTCTTCTaGGGACCTGTCCAGAACGAG +
Preference number: 4 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFPVRVF*GPVQNE
Trigger: CTCGTTCTGGACAGGTCCTCAGAAGACCCTCACTGG...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCTCTGGGAGCCCTCTTTaGTCTTACTGTCCTCTGTCG +
Preference number: 4 (lower is better)
Translates to: QRDGKYNESLLRLYKLELSGSPL*SYCPLS
Trigger: CGACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGA...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGATGATTGGCAGTGGGTaGCTAAAGGAGAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: KYNESLLRLYKLELSIQQMIGSG*LKERGV
Trigger: GACACCTCTCTCCTTTAGCCACCCACTGCCAATCAT...CTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCA +
Preference number: 4 (lower is better)
Translates to: KYNESLLRLYKLELSIQQAHWFS*LCSGNA
Trigger: TGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGC...CTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCTTGTCTATGGTACACTaGTTCGTGGCTGGACAGATA +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESLSMVH*FVAGQI
Trigger: TATCTGTCCAGCCACGAATCAGTGTACCATAGACAA...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR TCA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTTGTCAGCCAGCTTCGTaGGGGACATCATCATGGAGG +
Preference number: 4 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFCQPAS*GTSSWR
Trigger: CCTCCATGATGATGTCCCTCACGAAGCTGGCTGACA...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTACACTGATTCGTGGCTaGACAGATATAGTCATTATG +
Preference number: 4 (lower is better)
Translates to: SYRRCIASLSFSCPRPILTLIRG*TDIVIM
Trigger: CATAATGACTATATCTGTCCAGCCACGAATCAGTGT...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTGGTACACTGATTCGTaGCTGGACAGATATAGTCAT +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKWYTDS*LDRYSH
Trigger: ATGACTATATCTGTCCAGCCACGAATCAGTGTACCA...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGCACAGATATTCTTTGTaGTGCAGTTTTAACTCACGG +
Preference number: 4 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKHRYSL*CSFNSR
Trigger: CCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTG...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTCACAGATATTCTTTGTaGTGCAGTTTTAACTCACGG +
Preference number: 4 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLHRYSL*CSFNSR
Trigger: CCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTG...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTAGCGATGATTGGCAGTaGGTGGCTAAAGGAGAGAGG +
Preference number: 4 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFSDDWQ*VAKGER
Trigger: CCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCT...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTACACTGATTCGTGGCTaGACAGATATAGTCATTATG +
Preference number: 4 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSTLIRG*TDIVIM
Trigger: CATAATGACTATATCTGTCCAGCCACGAATCAGTGT...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTACACTGATTCGTGGCTaGACAGATATAGTCATTATG +
Preference number: 4 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSTLIRG*TDIVIM
Trigger: CATAATGACTATATCTGTCCAGCCACGAATCAGTGT...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTATGATTGGCAGTGGGTaGCTAAAGGAGAGAGGTGTC +
Preference number: 4 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFMIGSG*LKERGV
Trigger: GACACCTCTCTCCTTTAGCCACCCACTGCCAATCAT...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGTGGTACACTGATTCGTaGCTGGACAGATATAGTCAT +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKWYTDS*LDRYSH
Trigger: ATGACTATATCTGTCCAGCCACGAATCAGTGTACCA...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCAGATATTCTTTGTGCTaGAGTTTTAACTCACGGAAC +
Preference number: 4 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESRYSLC*SFNSRN
Trigger: GTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCT...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp CAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCACAGATATTCTTTGTaGTGCAGTTTTAACTCACGG +
Preference number: 4 (lower is better)
Translates to: QREPSKVIQVRTQHSAVSHRYSL*CSFNSR
Trigger: CCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTG...ACTTACTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR GCA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGCACAGATATTCTTTGTaGTGCAGTTTTAACTCACGG +
Preference number: 4 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKHRYSL*CSFNSR
Trigger: CCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTG...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CCA 90 bp CAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCTGGTACACTGATTCGTaGCTGGACAGATATAGTCAT +
Preference number: 4 (lower is better)
Translates to: QRDGKYNESLLRLYKLELWYTDS*LDRYSH
Trigger: ATGACTATATCTGTCCAGCCACGAATCAGTGTACCA...GAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS TCA 90 bp TGGGACGGCTCACTAGCACATTGGGTGGCTCAGCTTCCAGCAGGGTaGGCACCAGCTGCTCGGGACTCAGAGAGTTCAGCAGTAGCTCCT +
Preference number: 5 (lower is better)
Translates to: WDGSLAHWVAQLPAG*APAARDSESSAVAP
Trigger: AGGAGCTACTGCTGAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAATGTGCTAGTGAGCCGTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 90 bp ACTAGCACATTGGGTGGCTCAGCTTCCAGCAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTCAGCAGTAGCTCCTTCACCCGGGGT +
Preference number: 5 (lower is better)
Translates to: TSTLGGSASSRVSTS*SGLREFSSSSFTRG
Trigger: ACCCCGGGTGAAGGAGCTACTGCTGAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAATGTGCTAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCAGAAGCATCAGGAGGTaGGCCAGACGGACTGACTGC +
Preference number: 5 (lower is better)
Translates to: FSAPSPAPHLLDAARLLARSIRR*ARRTDC
Trigger: GCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCT...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS TCA 90 bp CCCTCATCCCTTGGGACAGCACTCTTCGTCTGCGCAACGTGCCAGTaGGGGTCTTCTGAGGACCTGTCCAGAACGAGGTCTGGAGCAAAG +
Preference number: 5 (lower is better)
Translates to: PSSLGTALFVCATCQ*GSSEDLSRTRSGAK
Trigger: CTTTGCTCCAGACCTCGTTCTGGACAGGTCCTCAGAAGACCCTCACTGGCACGTTGCGCAGACGAAGAGTGCTGTCCCAAGGGATGAGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGGAGCAAAGATGAGCTaGCCGGGGTGGTCGATGGAG +
Preference number: 5 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEGAKMS*PGWSME
Trigger: CTCCATCGACCACCCCGGCAAGCTCATCTTTGCTCC...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS TCA 90 bp TGGGACAGCACTCTTCGTCTGCGCAACGTGCCAGTGAGGGTCTTCTaGGGACCTGTCCAGAACGAGGTCTGGAGCAAAGATGAGCTTGCC +
Preference number: 5 (lower is better)
Translates to: WDSTLRLRNVPVRVF*GPVQNEVWSKDELA
Trigger: GGCAAGCTCATCTTTGCTCCAGACCTCGTTCTGGACAGGTCCTCAGAAGACCCTCACTGGCACGTTGCGCAGACGAAGAGTGCTGTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS CCA 90 bp GAGAGGTGTCCAGAAGTTGGCCATAGCACATTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTGCTGGGAACA +
Preference number: 5 (lower is better)
Translates to: ERCPEVGHSTFGLAV*RTGPPSRLPVLLGT
Trigger: TGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGGACACCTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 90 bp ATAATCACTGCAGACGGCGCAGAAGTGAGCATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGCACAACCGCTCCCGCCAAGCTTCCT +
Preference number: 5 (lower is better)
Translates to: IITADGAEVSIPLGA*TSNRAGTTAPAKLP
Trigger: AGGAAGCTTGGCGGGAGCGGTTGTGCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTGCAGTGATTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 90 bp TCAGCAGTAGCTCCTTCACCCGGGGTGTGTGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCACCTGCTCGCTGGCACTTCTCTGTC +
Preference number: 5 (lower is better)
Translates to: SAVAPSPGVCAHWFS*LCSGNAPARWHFSV
Trigger: GACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAAGGAGCTACTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 90 bp CCCACCATCAGCACCTCCATCCAGCAGCTTTCCAAGAGGCGGACTTaGTCCAACAGGCTGAGCTCCACAAAGCCAGGGATTTTCTTGGCC +
Preference number: 5 (lower is better)
Translates to: PTISTSIQQLSKRRT*SNRLSSTKPGIFLA
Trigger: GGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAAAGCTGCTGGATGGAGGTGCTGATGGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCCTGGTTCTCTTGGCTTaGTTCAGGCAATGCACCTGC +
Preference number: 5 (lower is better)
Translates to: FSAPSPAPHLLDAARLLALVLLA*FRQCTC
Trigger: GCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAG...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGATAGCACATTTGGGCTaGCAGTCTGGCGAACAGGCC +
Preference number: 5 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEIAHLG*QSGEQA
Trigger: GGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTAT...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCTTCCAAGAGGCGGACTaGGTCCAACAGGCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: LCRWAFESFLLAACGRQSFQEAD*VQQAEL
Trigger: GAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAA...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAAGGAGCAAAGATGAGCTaGCCGGGGTGGTCGATGGAG +
Preference number: 5 (lower is better)
Translates to: CRWAFESFLLAACGRQSQGAKMS*PGWSME
Trigger: CTCCATCGACCACCCCGGCAAGCTCATCTTTGCTCC...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCAGAAGCATCAGGAGGTaGGCCAGACGGACTGACTGC +
Preference number: 5 (lower is better)
Translates to: LCRWAFESFLLAACGRQSRSIRR*ARRTDC
Trigger: GCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCT...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS TCA 90 bp CCTCCATCCAGCAGCTTTCCAAGAGGCGGACTTGGTCCAACAGGCTaGGCTCCACAAAGCCAGGGATTTTCTTGGCCCAGCCAATCATGT +
Preference number: 5 (lower is better)
Translates to: PPSSSFPRGGLGPTG*APQSQGFSWPSQSC
Trigger: ACATGATTGGCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAAAGCTGCTGGATGGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 90 bp GGCTTGCAGTCTGGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTaGTGGGAACACTGTAGTTCATCACAGCAGGACTGTAGAATGTCA +
Preference number: 5 (lower is better)
Translates to: GLQSGEQAHLPGYRC*WEHCSSSQQDCRMS
Trigger: TGACATTCTACAGTCCTGCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 90 bp TTGGGCTTGCAGTCTGGCGAACAGGCCCACCTTCCAGGTTACCGGTaGTGCTGGGAACACTGTAGTTCATCACAGCAGGACTGTAGAATG +
Preference number: 5 (lower is better)
Translates to: LGLQSGEQAHLPGYR*CWEHCSSSQQDCRM
Trigger: CATTCTACAGTCCTGCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 90 bp ACCCGGGGTGTGTGCCCACTGGTTCTCTTGGCTTTGTTCAGGCAATaGACCTGCTCGCTGGCACTTCTCTGTCTTCGTACTATTCGGTAC +
Preference number: 5 (lower is better)
Translates to: TRGVCPLVLLALFRQ*TCSLALLCLRTIRY
Trigger: GTACCGAATAGTACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAATTCCAAGAGGCGGACTaGGTCCAACAGGCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: CRWAFESFLLAACGRQSQFQEAD*VQQAEL
Trigger: GAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAA...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAATTCCAAGAGGCGGACTaGGTCCAACAGGCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: SLCRWAFESFLLAACGRQFQEAD*VQQAEL
Trigger: GAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAA...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTACTTCCCCTCATCCCTaGGGACAGCACTCTTCGTCT +
Preference number: 5 (lower is better)
Translates to: CRILSAFSSTTSSGCGQATSPHP*GQHSSS
Trigger: AGACGAAGAGTGCTGTCCCAAGGGATGAGGGGAAGT...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS GCA 90 bp GGTGTGTGCCCACTGGTTCTCTTGGCTTTGTTCAGGCAATGCACCTaGTCGCTGGCACTTCTCTGTCTTCGTACTATTCGGTACCCACAC +
Preference number: 5 (lower is better)
Translates to: GVCPLVLLALFRQCT*SLALLCLRTIRYPH
Trigger: GTGTGGGTACCGAATAGTACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 90 bp GCACTTCCCCTCATCCCAGGGATTTTCTTGGCCCAGCCAATCATGTaGACCAGTTCCTTGTCAGCCAGCTTCGTGAGGGACATCATCATG +
Preference number: 5 (lower is better)
Translates to: ALPLIPGIFLAQPIM*TSSLSASFVRDIIM
Trigger: CATGATGATGTCCCTCACGAAGCTGGCTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGGATGAGGGGAAGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS CCA 90 bp TTGCAGTCTGGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTGCTaGGAACACTGTAGTTCATCACAGCAGGACTGTAGAATGTCATGG +
Preference number: 5 (lower is better)
Translates to: LQSGEQAHLPGYRCC*EHCSSSQQDCRMSW
Trigger: CCATGACATTCTACAGTCCTGCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTTTGGCCATAGCACATTaGGGCTTGCAGTCTGGCGAA +
Preference number: 5 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTLAIAH*GLQSGE
Trigger: TTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAA...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCAGAGGTGTCCAGAAGTaGGCCATAGCACATTTGGGC +
Preference number: 5 (lower is better)
Translates to: LCRWAFESFLLAACGRQSRGVQK*AIAHLG
Trigger: GCCCAAATGTGCTATGGCCAACTTCTGGACACCTCT...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGACTAGAGGTGTCCAGAAGTaGGCCATAGCACATTTGGGC +
Preference number: 5 (lower is better)
Translates to: SPAPHLLDAARLLAIMRTRGVQK*AIAHLG
Trigger: GCCCAAATGTGCTATGGCCAACTTCTGGACACCTCT...AGTCCTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCTGCCCACTGGTTCTCTaGGCTTTGTTCAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: LCRWAFESFLLAACGRQSCPLVL*ALFRQC
Trigger: GCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCA...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGGGGTACATACTGGAGTaGAGGAGAATCATGGCCTTC +
Preference number: 5 (lower is better)
Translates to: AFSSTTSSGCGQASGHNEGYILE*RRIMAF
Trigger: GAAGGCCATGATTCTCCTCAACTCCAGTATGTACCC...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 90 bp CTGAGCTCCACAAAGCCAGGGATTTTCTTGGCCCAGCCAATCATGTaGACCAGTTCCTTGTCAGCCAGCTTCGTGAGGGACATCATCATG +
Preference number: 5 (lower is better)
Translates to: LSSTKPGIFLAQPIM*TSSLSASFVRDIIM
Trigger: CATGATGATGTCCCTCACGAAGCTGGCTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS CCA 90 bp GCCCACTGGTTCTCTTGGCTTTGTTCAGGCAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTACTATTCGGTACCCACACCTTTCTC +
Preference number: 5 (lower is better)
Translates to: AHWFSWLCSGNAPAR*HFSVFVLFGTHTFL
Trigger: GAGAAAGGTGTGGGTACCGAATAGTACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCCTTGATGGTGAGTTTTaGATCTCCATGTCTTGCGTA +
Preference number: 5 (lower is better)
Translates to: FSAPSPAPHLLDAARLLALDGEF*ISMSCV
Trigger: TACGCAAGACATGGAGATCAAAAACTCACCATCAAG...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076634.5
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAATTCTGGGAGCCCTCTTaGCTCTTACTGTCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: SLCRWAFESFLLAACGRQFWEPS*LLLSSV
Trigger: GACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAA...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 90 bp CTGGAGTTGAGGAGAATCATGGCCTTCACACACAGATATTCTTTGTaGTGCAGTTTTAACTCACGGAACCGTGCCGTCGTCGCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: LELRRIMAFTHRYSL*CSFNSRNRAVVARS
Trigger: GCTCCTGGCGACGACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAACTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCATAATGAGTGTGTTCTAGTGATCTaGCTTCACACCAAGGACTCT +
Preference number: 5 (lower is better)
Translates to: AFSSTTSSGCGQASGHNECVLVI*LHTKDS
Trigger: AGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACA...CTCATTATGGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGC
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTGGAGCAAAGATGAGCTaGCCGGGGTGGTCGATGGAG +
Preference number: 5 (lower is better)
Translates to: SYRRCIASLSFSCPRPILGAKMS*PGWSME
Trigger: CTCCATCGACCACCCCGGCAAGCTCATCTTTGCTCC...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAGGGTACATACTGGAGTaGAGGAGAATCATGGCCTTC +
Preference number: 5 (lower is better)
Translates to: SLCRWAFESFLLAACGRQGYILE*RRIMAF
Trigger: GAAGGCCATGATTCTCCTCAACTCCAGTATGTACCC...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 90 bp GAGTTGAGGAGAATCATGGCCTTCACACACAGATATTCTTTGTGCTaGAGTTTTAACTCACGGAACCGTGCCGTCGTCGCCAGGAGCATG +
Preference number: 5 (lower is better)
Translates to: ELRRIMAFTHRYSLC*SFNSRNRAVVARSM
Trigger: CATGCTCCTGGCGACGACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAACTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGAGAGGTGTCCAGAAGTaGGCCATAGCACATTTGGGC +
Preference number: 5 (lower is better)
Translates to: ITRHESSQACEVGMRNELRGVQK*AIAHLG
Trigger: GCCCAAATGTGCTATGGCCAACTTCTGGACACCTCT...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTGTGTTCTAGTGATCTaGCTTCACACCAAGGACTCT +
Preference number: 5 (lower is better)
Translates to: CRILSAFSSTTSSGCGQACVLVI*LHTKDS
Trigger: AGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACA...AGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp ATTACACGTCATGAGTCCTCACAGGCCTGTGAGGTAGGAATGCGAAACGAGTTGCTGGTTCTCTTGGCTTaGTTCAGGCAATGCACCTGC +
Preference number: 5 (lower is better)
Translates to: ITRHESSQACEVGMRNELLVLLA*FRQCTC
Trigger: GCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAG...CAACTCGTTTCGCATTCCTACCTCACAGGCCTGTGAGGACTCATGACGTGTAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCGGCCAGGCTTCTGGCCACACACAGATATTCTTaGTGCTGCAGTTTTAACTCA +
Preference number: 5 (lower is better)
Translates to: FSAPSPAPHLLDAARLLATHRYS*CCSFNS
Trigger: TGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGT...GGCCAGAAGCCTGGCCGCATCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCACTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGATGTTCCATGCCCTaGTTACTGATGTGCCTGACA +
Preference number: 5 (lower is better)
Translates to: SLCRWAFESFLLAACGRQRCSMP*LLMCLT
Trigger: TGTCAGGCACATCAGTAACAAGGGCATGGAACATCT...TTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp CTGTGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCTTGATGGTGAGTTTTaGATCTCCATGTCTTGCGTA +
Preference number: 5 (lower is better)
Translates to: LCRWAFESFLLAACGRQSLDGEF*ISMSCV
Trigger: TACGCAAGACATGGAGATCAAAAACTCACCATCAAG...GCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000076634.5
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATTTGGCCATAGCACATTaGGGCTTGCAGTCTGGCGAA +
Preference number: 5 (lower is better)
Translates to: WLPSDQNVEFSAPSPAPHLAIAH*GLQSGE
Trigger: TTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAA...ATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGTCGATGGGCTTTTGAGAGCTTCCTCCTGGCTGCCTGTGGAAGACAAAGCCAAACACCAAGGACTCTTTaGAGGTTCTGCATAGAGAAG +
Preference number: 5 (lower is better)
Translates to: CRWAFESFLLAACGRQSQTPRTL*RFCIEK
Trigger: CTTCTCTATGCAGAACCTCAAAAGAGTCCTTGGTGT...TTGGCTTTGTCTTCCACAGGCAGCCAGGAGGAAGCTCTCAAAAGCCCATCGACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTTCCAAGAGGCGGACTaGGTCCAACAGGCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: KANLLAAFRSKCRILSAFFQEAD*VQQAEL
Trigger: GAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAA...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCGGAGCAAAGATGAGCTaGCCGGGGTGGTCGATGGAG +
Preference number: 5 (lower is better)
Translates to: VEDKANLLAAFRSKCRILGAKMS*PGWSME
Trigger: CTCCATCGACCACCCCGGCAAGCTCATCTTTGCTCC...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCAGAAGCATCAGGAGGTaGGCCAGACGGACTGACTGC +
Preference number: 5 (lower is better)
Translates to: KANLLAAFRSKCRILSAFRSIRR*ARRTDC
Trigger: GCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCT...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTAGAAGCATCAGGAGGTaGGCCAGACGGACTGACTGC +
Preference number: 5 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLRSIRR*ARRTDC
Trigger: GCAGTCAGTCCGTCTGGCCAACCTCCTGATGCTTCT...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCGACAATGCACTCATAACCGGGACCACATTTTaGCACTTCATGCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: WDLMPSSGVSEDSDNALITGTTF*HFMLSR
Trigger: TCTGCTCAGCATGAAGTGCAAAAATGTGGTCCCGGT...TATGAGTGCATTGTCGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATTTCTGGGAGCCCTCTTaGCTCTTACTGTCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: WLPSDQNVEFSAPSPAPHFWEPS*LLLSSV
Trigger: GACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAA...ATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS CCA 90 bp CTGAGTATTCGTGACGGCTCTCTACATAGGAGGAAGGGATATAGATaGGACCATGCTCCAAGGGTAGGATGGACTGGCTACAGTTATAAG +
Preference number: 5 (lower is better)
Translates to: LSIRDGSLHRRKGYR*DHAPRVGWTGYSYK
Trigger: CTTATAACTGTAGCCAGTCCATCCTACCCTTGGAGCATGGTCCCATCTATATCCCTTCCTCCTATGTAGAGAGCCGTCACGAATACTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTTTGGCCATAGCACATTaGGGCTTGCAGTCTGGCGAA +
Preference number: 5 (lower is better)
Translates to: SYRRCIASLSFSCPRPILLAIAH*GLQSGE
Trigger: TTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAA...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TCTTATAGACGGTGTATCGCGTCACTTTCCTTTTCCTGTCCAAGGCCAATCCTTAGAGGTGTCCAGAAGTaGGCCATAGCACATTTGGGC +
Preference number: 5 (lower is better)
Translates to: SYRRCIASLSFSCPRPILRGVQK*AIAHLG
Trigger: GCCCAAATGTGCTATGGCCAACTTCTGGACACCTCT...AAGGATTGGCCTTGGACAGGAAAAGGAAAGTGACGCGATACACCGTCTATAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTTGAATATGCTTGGCCCATGGGAAGTGGCACTCTTAAGAGGTATGGCCTTGTTTTCTGGGAGCCCTCTTaGCTCTTACTGTCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: FEYAWPMGSGTLKRYGLVFWEPS*LLLSSV
Trigger: GACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAA...AACAAGGCCATACCTCTTAAGAGTGCCACTTCCCATGGGCCAAGCATATTCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp ATACAAGTTAGAACTCAGCATTCAGCAGTAAGTCCTGGTACAGGGGACACCACATTCTGGGAGCCCTCTTaGCTCTTACTGTCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: IQVRTQHSAVSPGTGDTTFWEPS*LLLSSV
Trigger: GACAGAGGACAGTAAGAGCAAAGAGGGCTCCCAGAA...TGTGGTGTCCCCTGTACCAGGACTTACTGCTGAATGCTGAGTTCTAACTTGTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCATAGCACATTTGGGCTaGCAGTCTGGCGAACAGGCC +
Preference number: 5 (lower is better)
Translates to: VEDKANLLAAFRSKCRILIAHLG*QSGEQA
Trigger: GGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTAT...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGATAGCACATTTGGGCTaGCAGTCTGGCGAACAGGCC +
Preference number: 5 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSAIAHLG*QSGEQA
Trigger: GGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTAT...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TGTCCAAGGCCAATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTAGAGGTGTCCAGAAGTaGGCCATAGCACATTTGGGC +
Preference number: 5 (lower is better)
Translates to: CPRPILPSQTLTFSFQNSRGVQK*AIAHLG
Trigger: GCCCAAATGTGCTATGGCCAACTTCTGGACACCTCT...AGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATTGGCCTTGGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AGAGGATCTAGGAGGAGGAACAAGGTCACATCCAAGCTTGACCATTATCTTCTTCTGGTTCTCTTGGCTTaGTTCAGGCAATGCACCTGC +
Preference number: 5 (lower is better)
Translates to: RGSRRRNKVTSKLDHYLLLVLLA*FRQCTC
Trigger: GCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAG...AAGAAGATAATGGTCAAGCTTGGATGTGACCTTGTTCCTCCTCCTAGATCCTCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGATGCCCACTGGTTCTCTaGGCTTTGTTCAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGCPLVL*ALFRQC
Trigger: GCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCA...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTGCCCACTGGTTCTCTaGGCTTTGTTCAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: KANLLAAFRSKCRILSAFCPLVL*ALFRQC
Trigger: GCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCA...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGACTTCCCCTCATCCCTaGGGACAGCACTCTTCGTCT +
Preference number: 5 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSATSPHP*GQHSSS
Trigger: AGACGAAGAGTGCTGTCCCAAGGGATGAGGGGAAGT...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS TCA 90 bp GGGAACACTGTAGTTCATCACAGCAGGACTGTAGAATGTCATGGCTaGGTATTCGTGACGGCTCTCTACATAGGAGGAAGGGATATAGAT +
Preference number: 5 (lower is better)
Translates to: GNTVVHHSRTVECHG*VFVTALYIGGRDID
Trigger: ATCTATATCCCTTCCTCCTATGTAGAGAGCCGTCACGAATACTCAGCCATGACATTCTACAGTCCTGCTGTGATGAACTACAGTGTTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCTTGGCCATAGCACATTaGGGCTTGCAGTCTGGCGAA +
Preference number: 5 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESLAIAH*GLQSGE
Trigger: TTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAA...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCCTGGTTCTCTTGGCTTaGTTCAGGCAATGCACCTGC +
Preference number: 5 (lower is better)
Translates to: VEDKANLLAAFRSKCRILLVLLA*FRQCTC
Trigger: GCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAG...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCTGCCCACTGGTTCTCTaGGCTTTGTTCAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: VEDKANLLAAFRSKCRILCPLVL*ALFRQC
Trigger: GCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCA...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp CCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCCTTCTAAGGTTATACAAGGGGTACATACTGGAGTaGAGGAGAATCATGGCCTTC +
Preference number: 5 (lower is better)
Translates to: PSGQRDGKYNESLLRLYKGYILE*RRIMAF
Trigger: GAAGGCCATGATTCTCCTCAACTCCAGTATGTACCC...CTTGTATAACCTTAGAAGGCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAACCGGGACCACATTTTaGCACTTCATGCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGTGTTF*HFMLSR
Trigger: TCTGCTCAGCATGAAGTGCAAAAATGTGGTCCCGGT...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GTAGGAATGCGAAACGAGTTGATTGTCAATGTGGTTTTCAGTCCTACAATCAAGTGCCCACTGGTTCTCTaGGCTTTGTTCAGGCAATGC +
Preference number: 5 (lower is better)
Translates to: VGMRNELIVNVVFSPTIKCPLVL*ALFRQC
Trigger: GCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCA...CTTGATTGTAGGACTGAAAACCACATTGACAATCAACTCGTTTCGCATTCCTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAAGATGTTCCATGCCCTaGTTACTGATGTGCCTGACA +
Preference number: 5 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGRCSMP*LLMCLT
Trigger: TGTCAGGCACATCAGTAACAAGGGCATGGAACATCT...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GTGGAAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCACCGGGACCACATTTTaGCACTTCATGCTGAGCAGA +
Preference number: 5 (lower is better)
Translates to: VEDKANLLAAFRSKCRILTGTTF*HFMLSR
Trigger: TCTGCTCAGCATGAAGTGCAAAAATGTGGTCCCGGT...GAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTTCCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTACACCAAGGACTCTTTaGAGGTTCTGCATAGAGAAG +
Preference number: 5 (lower is better)
Translates to: KPIFWLPSDQNVEFSAPSTPRTL*RFCIEK
Trigger: CTTCTCTATGCAGAACCTCAAAAGAGTCCTTGGTGT...AGAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTGTGTTCTAGTGATCTaGCTTCACACCAAGGACTCT +
Preference number: 5 (lower is better)
Translates to: KANLLAAFRSKCRILSAFCVLVI*LHTKDS
Trigger: AGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACA...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp GAACTCTTAAGATGTTTTCCAAGTGGGCAAAGAGATGGAAAGTACAACGAGAGCACACCAAGGACTCTTTaGAGGTTCTGCATAGAGAAG +
Preference number: 5 (lower is better)
Translates to: ELLRCFPSGQRDGKYNESTPRTL*RFCIEK
Trigger: CTTCTCTATGCAGAACCTCAAAAGAGTCCTTGGTGT...GCTCTCGTTGTACTTTCCATCTCTTTGCCCACTTGGAAAACATCTTAAGAGTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAGACAAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGTGTGTTCTAGTGATCTaGCTTCACACCAAGGACTCT +
Preference number: 5 (lower is better)
Translates to: KTKPIFWLPSDQNVEFSACVLVI*LHTKDS
Trigger: AGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACA...CGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTTGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAGTACAACGAGAGCCTTCTAAGGTTATACAAGTTAGAACTCAGCATTCAGCAGAGATGTTCCATGCCCTaGTTACTGATGTGCCTGACA +
Preference number: 5 (lower is better)
Translates to: KYNESLLRLYKLELSIQQRCSMP*LLMCLT
Trigger: TGTCAGGCACATCAGTAACAAGGGCATGGAACATCT...CTGCTGAATGCTGAGTTCTAACTTGTATAACCTTAGAAGGCTCTCGTTGTACTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTCTGGTTCTCTTGGCTTaGTTCAGGCAATGCACCTGC +
Preference number: 5 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFLVLLA*FRQCTC
Trigger: GCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAG...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AAAGCCAATCTTCTGGCTGCCTTCAGATCAAAATGTAGAATTCTCAGCGCCTTCACACACAGATATTCTTaGTGCTGCAGTTTTAACTCA +
Preference number: 5 (lower is better)
Translates to: KANLLAAFRSKCRILSAFTHRYS*CCSFNS
Trigger: TGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGT...GAAGGCGCTGAGAATTCTACATTTTGATCTGAAGGCAGCCAGAAGATTGGCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp TTCAGATCAAAATGTAGAATTCTCAGCGCCTTCTCCAGCACCACATCTTCTGGAACACACAGATATTCTTaGTGCTGCAGTTTTAACTCA +
Preference number: 5 (lower is better)
Translates to: FRSKCRILSAFSSTTSSGTHRYS*CCSFNS
Trigger: TGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGT...TCCAGAAGATGTGGTGCTGGAGAAGGCGCTGAGAATTCTACATTTTGATCTGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTAGATGTTCCATGCCCTaGTTACTGATGTGCCTGACA +
Preference number: 5 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFRCSMP*LLMCLT
Trigger: TGTCAGGCACATCAGTAACAAGGGCATGGAACATCT...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS-3UTR CAA 90 bp AATCCTTCCAAGTCAGACTTTGACCTTTTCATTCCAGAACTCTTAAGATGTTTTTGTGTTCTAGTGATCTaGCTTCACACCAAGGACTCT +
Preference number: 5 (lower is better)
Translates to: NPSKSDFDLFIPELLRCFCVLVI*LHTKDS
Trigger: AGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACA...AAAACATCTTAAGAGTTCTGGAATGAAAAGGTCAAAGTCTGACTTGGAAGGATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp GCAGACGGCGCAGAAGTGAGCATCCCTCTTGGCGCTTaGACTAGTAACAGGGCTGGCACAACCGCTCCCGCC +
Preference number: 6 (lower is better)
Translates to: ADGAEVSIPLGA*TSNRAGTTAPA
Trigger: GGCGGGAGCGGTTGTGCCAGCCCTGTTACTAGTCCAAGCGCCAAGAGGGATGCTCACTTCTGCGCCGTCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp ATGGAGGCCTCGGTGAAGGGCATGCTGGGACGGCTCACTAGCACATaGGGTGGCTCAGCTTCCAGCAGGGTGAGCACCAGCTGCTCGGGA +
Preference number: 6 (lower is better)
Translates to: MEASVKGMLGRLTST*GGSASSRVSTSCSG
Trigger: TCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAATGTGCTAGTGAGCCGTCCCAGCATGCCCTTCACCGAGGCCTCCAT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 72 bp TCGGTGAAGGGCATGCTGGGACGGCTCACTAGCACATaGGGTGGCTCAGCTTCCAGCAGGGTGAGCACCAGC +
Preference number: 6 (lower is better)
Translates to: SVKGMLGRLTST*GGSASSRVSTS
Trigger: GCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAATGTGCTAGTGAGCCGTCCCAGCATGCCCTTCACCGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp GCTCCTTCACCCGGGGTGTGTGCCCACTGGTTCTCTTaGCTTTGTTCAGGCAATGCACCTGCTCGCTGGCAC +
Preference number: 6 (lower is better)
Translates to: APSPGVCAHWFS*LCSGNAPARWH
Trigger: GTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 72 bp TTGGGTGGCTCAGCTTCCAGCAGGGTGAGCACCAGCTaGTCGGGACTCAGAGAGTTCAGCAGTAGCTCCTTC +
Preference number: 6 (lower is better)
Translates to: LGGSASSRVSTS*SGLREFSSSSF
Trigger: GAAGGAGCTACTGCTGAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp GGGTGGCTAAAGGAGAGAGGTGTCCAGAAGTTGGCCATAGCACATTaGGGCTTGCAGTCTGGCGAACAGGCCCACCTTCCAGGTTACCGG +
Preference number: 6 (lower is better)
Translates to: GWLKERGVQKLAIAH*GLQSGEQAHLPGYR
Trigger: CCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGGACACCTCTCTCCTTTAGCCACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS TCA 72 bp TCACTAGCACATTGGGTGGCTCAGCTTCCAGCAGGGTaGGCACCAGCTGCTCGGGACTCAGAGAGTTCAGCA +
Preference number: 6 (lower is better)
Translates to: SLAHWVAQLPAG*APAARDSESSA
Trigger: TGCTGAACTCTCTGAGTCCCGAGCAGCTGGTGCTCACCCTGCTGGAAGCTGAGCCACCCAATGTGCTAGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 72 bp CAGTCTGGCGAACAGGCCCACCTTCCAGGTTACCGGTaGTGCTGGGAACACTGTAGTTCATCACAGCAGGAC +
Preference number: 6 (lower is better)
Translates to: QSGEQAHLPGYR*CWEHCSSSQQD
Trigger: GTCCTGCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp CCAGAAGTTGGCCATAGCACATTTGGGCTTGCAGTCTaGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTG +
Preference number: 6 (lower is better)
Translates to: PEVGHSTFGLAV*RTGPPSRLPVL
Trigger: CAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp CTAAAGGAGAGAGGTGTCCAGAAGTTGGCCATAGCACATTTGGGCTaGCAGTCTGGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTGC +
Preference number: 6 (lower is better)
Translates to: LKERGVQKLAIAHLG*QSGEQAHLPGYRCC
Trigger: GCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGGACACCTCTCTCCTTTAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp GCGATGATTGGCAGTGGGTGGCTAAAGGAGAGAGGTGTCCAGAAGTaGGCCATAGCACATTTGGGCTTGCAGTCTGGCGAACAGGCCCAC +
Preference number: 6 (lower is better)
Translates to: AMIGSGWLKERGVQK*AIAHLGLQSGEQAH
Trigger: GTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGGACACCTCTCTCCTTTAGCCACCCACTGCCAATCATCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp AGTAGCTCCTTCACCCGGGGTGTGTGCCCACTGGTTCTCTTGGCTTaGTTCAGGCAATGCACCTGCTCGCTGGCACTTCTCTGTCTTCGT +
Preference number: 6 (lower is better)
Translates to: SSSFTRGVCPLVLLA*FRQCTCSLALLCLR
Trigger: ACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAAGGAGCTACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp TTCAGCAGTAGCTCCTTCACCCGGGGTGTGTGCCCACTGGTTCTCTaGGCTTTGTTCAGGCAATGCACCTGCTCGCTGGCACTTCTCTGT +
Preference number: 6 (lower is better)
Translates to: FSSSSFTRGVCPLVL*ALFRQCTCSLALLC
Trigger: ACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAAGGAGCTACTGCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS TCA 72 bp AGCAGCTTTCCAAGAGGCGGACTTGGTCCAACAGGCTaGGCTCCACAAAGCCAGGGATTTTCTTGGCCCAGC +
Preference number: 6 (lower is better)
Translates to: SSFPRGGLGPTG*APQSQGFSWPS
Trigger: GCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAAAGCTGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 72 bp TCTGGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTaGTGGGAACACTGTAGTTCATCACAGCAGGACTGT +
Preference number: 6 (lower is better)
Translates to: SGEQAHLPGYRC*WEHCSSSQQDC
Trigger: ACAGTCCTGCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp GGCGAACAGGCCCACCTTCCAGGTTACCGGTGCTGCTaGGAACACTGTAGTTCATCACAGCAGGACTGTAGA +
Preference number: 6 (lower is better)
Translates to: GEQAHLPGYRCC*EHCSSSQQDCR
Trigger: TCTACAGTCCTGCTGTGATGAACTACAGTGTTCCCAGCAGCACCGGTAACCTGGAAGGTGGGCCTGTTCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp AGCACCTCCATCCAGCAGCTTTCCAAGAGGCGGACTTaGTCCAACAGGCTGAGCTCCACAAAGCCAGGGATT +
Preference number: 6 (lower is better)
Translates to: STSIQQLSKRRT*SNRLSSTKPGI
Trigger: AATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAGTCCGCCTCTTGGAAAGCTGCTGGATGGAGGTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS CAA 90 bp CGGACTTGGTCCAACAGGCTGAGCTCCACAAAGCCAGGGATTTTCTaGGCCCAGCCAATCATGTGCACCAGTTCCTTGTCAGCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: RTWSNRLSSTKPGIF*AQPIMCTSSLSASF
Trigger: GAAGCTGGCTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGACCAAGTCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS TCA 72 bp ACTCTTCGTCTGCGCAACGTGCCAGTGAGGGTCTTCTaGGGACCTGTCCAGAACGAGGTCTGGAGCAAAGAT +
Preference number: 6 (lower is better)
Translates to: TLRLRNVPVRVF*GPVQNEVWSKD
Trigger: ATCTTTGCTCCAGACCTCGTTCTGGACAGGTCCTCAGAAGACCCTCACTGGCACGTTGCGCAGACGAAGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS GCA 72 bp AGAGAGTTCAGCAGTAGCTCCTTCACCCGGGGTGTGTaGCCACTGGTTCTCTTGGCTTTGTTCAGGCAATGC +
Preference number: 6 (lower is better)
Translates to: REFSSSSFTRGV*PLVLLALFRQC
Trigger: GCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACACACCCCGGGTGAAGGAGCTACTGCTGAACTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp CCTTCCACGCACTTCCCCTCATCCCAGGGATTTTCTTaGCCCAGCCAATCATGTGCACCAGTTCCTTGTCAG +
Preference number: 6 (lower is better)
Translates to: PSTHFPSSQGFS*PSQSCAPVPCQ
Trigger: CTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGGATGAGGGGAAGTGCGTGGAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS CAA 72 bp AGAGGTGTCCAGAAGTTGGCCATAGCACATTTGGGCTaGCAGTCTGGCGAACAGGCCCACCTTCCAGGTTAC +
Preference number: 6 (lower is better)
Translates to: RGVQKLAIAHLG*QSGEQAHLPGY
Trigger: GTAACCTGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGGACACCTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 72 bp AAGGAGAGAGGTGTCCAGAAGTTGGCCATAGCACATTaGGGCTTGCAGTCTGGCGAACAGGCCCACCTTCCA +
Preference number: 6 (lower is better)
Translates to: KERGVQKLAIAH*GLQSGEQAHLP
Trigger: TGGAAGGTGGGCCTGTTCGCCAGACTGCAAGCCCAAATGTGCTATGGCCAACTTCTGGACACCTCTCTCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 72 bp CCCTTCCACGCACTTCCCCTCATCCCAGGGATTTTCTaGGCCCAGCCAATCATGTGCACCAGTTCCTTGTCA +
Preference number: 6 (lower is better)
Translates to: PFHALPLIPGIF*AQPIMCTSSLS
Trigger: TGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGGATGAGGGGAAGTGCGTGGAAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS CAA 90 bp TGTCAAAGATTTCCAGAATCCCTTCCACGCACTTCCCCTCATCCCTaGGGACAGCACTCTTCGTCTGCGCAACGTGCCAGTGAGGGTCTT +
Preference number: 6 (lower is better)
Translates to: CQRFPESLPRTSPHP*GQHSSSAQRASEGL
Trigger: AAGACCCTCACTGGCACGTTGCGCAGACGAAGAGTGCTGTCCCAAGGGATGAGGGGAAGTGCGTGGAAGGGATTCTGGAAATCTTTGACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000101291.11
ENSMUST00000218621.2
CDS CAA 90 bp TTCCAGAATCCCTTCCACGCACTTCCCCTCATCCCAGGGATTTTCTaGGCCCAGCCAATCATGTGCACCAGTTCCTTGTCAGCCAGCTTC +
Preference number: 6 (lower is better)
Translates to: FQNPFHALPLIPGIF*AQPIMCTSSLSASF
Trigger: GAAGCTGGCTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGGATGAGGGGAAGTGCGTGGAAGGGATTCTGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000133564.9
CDS GCA 72 bp GTGTGCCCACTGGTTCTCTTGGCTTTGTTCAGGCAATaGACCTGCTCGCTGGCACTTCTCTGTCTTCGTACT +
Preference number: 6 (lower is better)
Translates to: VCPLVLLALFRQ*TCSLALLCLRT
Trigger: AGTACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGGGCACAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp CGTGACGGCTCTCTACATAGGAGGAAGGGATATAGATaGGACCATGCTCCAAGGGTAGGATGGACTGGCTAC +
Preference number: 6 (lower is better)
Translates to: RDGSLHRRKGYR*DHAPRVGWTGY
Trigger: GTAGCCAGTCCATCCTACCCTTGGAGCATGGTCCCATCTATATCCCTTCCTCCTATGTAGAGAGCCGTCACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS GCA 72 bp CCACTGGTTCTCTTGGCTTTGTTCAGGCAATGCACCTaGTCGCTGGCACTTCTCTGTCTTCGTACTATTCGG +
Preference number: 6 (lower is better)
Translates to: PLVLLALFRQCT*SLALLCLRTIR
Trigger: CCGAATAGTACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAACCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 72 bp TCCAACAGGCTGAGCTCCACAAAGCCAGGGATTTTCTaGGCCCAGCCAATCATGTGCACCAGTTCCTTGTCA +
Preference number: 6 (lower is better)
Translates to: SNRLSSTKPGIF*AQPIMCTSSLS
Trigger: TGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAATCCCTGGCTTTGTGGAGCTCAGCCTGTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS CCA 72 bp GAGGTTCTGCATAGAGAAGCGATGATTGGCAGTGGGTaGCTAAAGGAGAGAGGTGTCCAGAAGTTGGCCATA +
Preference number: 6 (lower is better)
Translates to: EVLHREAMIGSG*LKERGVQKLAI
Trigger: TATGGCCAACTTCTGGACACCTCTCTCCTTTAGCCACCCACTGCCAATCATCGCTTCTCTATGCAGAACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CCA 72 bp TTCTCTTGGCTTTGTTCAGGCAATGCACCTGCTCGCTaGCACTTCTCTGTCTTCGTACTATTCGGTACCCAC +
Preference number: 6 (lower is better)
Translates to: FSWLCSGNAPAR*HFSVFVLFGTH
Trigger: GTGGGTACCGAATAGTACGAAGACAGAGAAGTGCCAGCGAGCAGGTGCATTGCCTGAACAAAGCCAAGAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 72 bp ATTTTCTTGGCCCAGCCAATCATGTGCACCAGTTCCTaGTCAGCCAGCTTCGTGAGGGACATCATCATGGAG +
Preference number: 6 (lower is better)
Translates to: IFLAQPIMCTSS*SASFVRDIIME
Trigger: CTCCATGATGATGTCCCTCACGAAGCTGGCTGACAAGGAACTGGTGCACATGATTGGCTGGGCCAAGAAAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 90 bp ATACTGGAGTTGAGGAGAATCATGGCCTTCACACACAGATATTCTTaGTGCTGCAGTTTTAACTCACGGAACCGTGCCGTCGTCGCCAGG +
Preference number: 6 (lower is better)
Translates to: ILELRRIMAFTHRYS*CCSFNSRNRAVVAR
Trigger: CCTGGCGACGACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAACTCCAGTAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 72 bp AGAATCATGGCCTTCACACACAGATATTCTTTGTGCTaGAGTTTTAACTCACGGAACCGTGCCGTCGTCGCC +
Preference number: 6 (lower is better)
Translates to: RIMAFTHRYSLC*SFNSRNRAVVA
Trigger: GGCGACGACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS GCA 72 bp AGGAGAATCATGGCCTTCACACACAGATATTCTTTGTaGTGCAGTTTTAACTCACGGAACCGTGCCGTCGTC +
Preference number: 6 (lower is better)
Translates to: RRIMAFTHRYSL*CSFNSRNRAVV
Trigger: GACGACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS CAA 90 bp TCTTCAGGGTCTCTCTGTTTACAGGCAAGGTGTGTTCTAGTGATCTaGCTTCACACCAAGGACTCTTTTGAGGTTCTGCATAGAGAAGCG +
Preference number: 6 (lower is better)
Translates to: SSGSLCLQARCVLVI*LHTKDSFEVLHREA
Trigger: CGCTTCTCTATGCAGAACCTCAAAAGAGTCCTTGGTGTGAAGCAAGATCACTAGAACACACCTTGCCTGTAAACAGAGAGACCCTGAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2
CDS CAA 72 bp TTGAGGAGAATCATGGCCTTCACACACAGATATTCTTaGTGCTGCAGTTTTAACTCACGGAACCGTGCCGTC +
Preference number: 6 (lower is better)
Translates to: LRRIMAFTHRYS*CCSFNSRNRAV
Trigger: GACGGCACGGTTCCGTGAGTTAAAACTGCAGCACAAAGAATATCTGTGTGTGAAGGCCATGATTCTCCTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000218621.2
CDS CCA 72 bp ACGCCGGTTCTTGTCTATGGTACACTGATTCGTGGCTaGACAGATATAGTCATTATGTCCTTGAATGCTTCT +
Preference number: 6 (lower is better)
Translates to: TPVLVYGTLIRG*TDIVIMSLNAS
Trigger: AGAAGCATTCAAGGACATAATGACTATATCTGTCCAGCCACGAATCAGTGTACCATAGACAAGAACCGGCGT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076634.5
ENSMUST00000101291.11
ENSMUST00000110421.9
ENSMUST00000133564.9
ENSMUST00000218621.2