RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ESR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019768

Ensembl transcript IDs: ENSMUST00000067086.14, ENSMUST00000105588.8, ENSMUST00000105589.2, ENSMUST00000105590.8

Found 358 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCTaGGAAGCTGCTGCCCTGGCCAGGTCATTCTCCACATTTCTCCCT +
Preference number: 1 (lower is better)
Translates to: QSSLTVHGGICEVHL*EAAALARSFSTFLP
Trigger: AGGGAGAAATGTGGAGAATGACCTGGCCAGGGCAGCAGCTTCCCAGAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR GCA 90 bp ACTTTGAAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTaGTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAA +
Preference number: 1 (lower is better)
Translates to: TLKSLLRLPLGAIMK*LSEVKCLLSRLGSQ
Trigger: TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTTCAAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CCA 90 bp AGAGACGTACTGACAAATAGAGAGATGTATCTTCAAGAGAGTGGTTaGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCTTTG +
Preference number: 1 (lower is better)
Translates to: RDVLTNREMYLQESG*TLNLSIRSAACIAL
Trigger: CAAAGCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGAAGATACATCTCTCTATTTGTCAGTACGTCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR TCA 90 bp AGACCTGTACCAAAGAGAGTCATGGTTGCCTTATGTGCTACTGTATaGCTCTATTTGCCTTTAAAAGACTTAGGTTCCCTAAGCAGGTCT +
Preference number: 1 (lower is better)
Translates to: RPVPKRVMVALCATV*LYLPLKDLGSLSRS
Trigger: AGACCTGCTTAGGGAACCTAAGTCTTTTAAAGGCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGGTACAGGTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 90 bp CACAGAAAGCGTTGTTTGTACGCTGTGAAGGAAAATAAACTGGCGTaGTGTCACTTATTAATTCAAGTCTCGACGACCAATGACCTCTCT +
Preference number: 1 (lower is better)
Translates to: HRKRCLYAVKENKLA*CHLLIQVSTTNDLS
Trigger: AGAGAGGTCATTGGTCGTCGAGACTTGAATTAATAAGTGACATCACGCCAGTTTATTTTCCTTCACAGCGTACAAACAACGCTTTCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR GCA 90 bp CAACCTCCAAAGACCTGTACCAAAGAGAGTCATGGTTGCCTTATGTaGTACTGTATGACTCTATTTGCCTTTAAAAGACTTAGGTTCCCT +
Preference number: 1 (lower is better)
Translates to: QPPKTCTKESHGCLM*YCMTLFAFKRLRFP
Trigger: AGGGAACCTAAGTCTTTTAAAGGCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGGTACAGGTCTTTGGAGGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 90 bp AGTAGCAAGTGCCACATATGCAACCCAGAGCAGTATTTAAGCACGTaGTTTAGTTTTCTCAGACTAACTCTACTGGATTTTCCTGTGCAA +
Preference number: 1 (lower is better)
Translates to: SSKCHICNPEQYLST*FSFLRLTLLDFPVQ
Trigger: TTGCACAGGAAAATCCAGTAGAGTTAGTCTGAGAAAACTAAACCACGTGCTTAAATACTGCTCTGGGTTGCATATGTGGCACTTGCTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CCA 90 bp TTGCCGCTACTCTCTTCCTTGGAACTCAAATTGCCATTTTGGAAATaGCTGCCAGTAGAGCTAGTATTACTTTATTACAGTGCAGACAGA +
Preference number: 1 (lower is better)
Translates to: LPLLSSLELKLPFWK*LPVELVLLYYSADR
Trigger: TCTGTCTGCACTGTAATAAAGTAATACTAGCTCTACTGGCAGCCATTTCCAAAATGGCAATTTGAGTTCCAAGGAAGAGAGTAGCGGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 90 bp TCACTGTTGCCGCTACTCTCTTCCTTGGAACTCAAATTGCCATTTTaGAAATGGCTGCCAGTAGAGCTAGTATTACTTTATTACAGTGCA +
Preference number: 1 (lower is better)
Translates to: SLLPLLSSLELKLPF*KWLPVELVLLYYSA
Trigger: TGCACTGTAATAAAGTAATACTAGCTCTACTGGCAGCCATTTCCAAAATGGCAATTTGAGTTCCAAGGAAGAGAGTAGCGGCAACAGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 90 bp CCTACAGCCCTCATGAAGGAGACTAATTCATTCCAGGGTATTAACTaGAATAGACTTTCTGTTTCCCACAAGTCATGGGAAGCAAGAATT +
Preference number: 1 (lower is better)
Translates to: PTALMKETNSFQGIN*NRLSVSHKSWEARI
Trigger: AATTCTTGCTTCCCATGACTTGTGGGAAACAGAAAGTCTATTTCAGTTAATACCCTGGAATGAATTAGTCTCCTTCATGAGGGCTGTAGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR TCA 90 bp CCCATATCTCCCTACCCACCTCATGCTGACTCTTTGAGTAGATTGTaGCATTCAAATTTTAAATTACCTCCAGGTGAGGGTAAAGTACAA +
Preference number: 1 (lower is better)
Translates to: PISPYPPHADSLSRL*HSNFKLPPGEGKVQ
Trigger: TTGTACTTTACCCTCACCTGGAGGTAATTTAAAATTTGAATGTCACAATCTACTCAAAGAGTCAGCATGAGGTGGGTAGGGAGATATGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR GCA 90 bp AAGCTGGATCAACCTCCAAAGACCTGTACCAAAGAGAGTCATGGTTaGCTTATGTGCTACTGTATGACTCTATTTGCCTTTAAAAGACTT +
Preference number: 1 (lower is better)
Translates to: KLDQPPKTCTKESHG*LMCYCMTLFAFKRL
Trigger: AAGTCTTTTAAAGGCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGGTACAGGTCTTTGGAGGTTGATCCAGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 90 bp TATCTCCAATGTTACCAGGGAAATCTGTCAAAGACACAACTTCCTTaGGGTCTAGACATTGTCACCTACATTGATAGCATCTTTTCTTTG +
Preference number: 1 (lower is better)
Translates to: YLQCYQGNLSKTQLP*GLDIVTYIDSIFSL
Trigger: CAAAGAAAAGATGCTATCAATGTAGGTGACAATGTCTAGACCCCAAGGAAGTTGTGTCTTTGACAGATTTCCCTGGTAACATTGGAGATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 90 bp TTATCAGTAAGTCGCTTATTTGTTCAGCCCCAAAGGCATAAGATATaGCATGGAAAGTCATATCTCCAATGTTACCAGGGAAATCTGTCA +
Preference number: 1 (lower is better)
Translates to: LSVSRLFVQPQRHKI*HGKSYLQCYQGNLS
Trigger: TGACAGATTTCCCTGGTAACATTGGAGATATGACTTTCCATGCCATATCTTATGCCTTTGGGGCTGAACAAATAAGCGACTTACTGATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 90 bp TGGGTCTCAACAAGTAGCTTCAATGCAGTTATCTCAATTCATTCATaGAGACTGAAGACTATAGGAATCCTCATAGTTAGTGACGTAGCA +
Preference number: 1 (lower is better)
Translates to: WVSTSSFNAVISIHS*RLKTIGILIVSDVA
Trigger: TGCTACGTCACTAACTATGAGGATTCCTATAGTCTTCAGTCTTCATGAATGAATTGAGATAACTGCATTGAAGCTACTTGTTGAGACCCA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR TCA 90 bp TTATTCAAATTCCCATATCTCCCTACCCACCTCATGCTGACTCTTTaGGTAGATTGTGACATTCAAATTTTAAATTACCTCCAGGTGAGG +
Preference number: 1 (lower is better)
Translates to: LFKFPYLPTHLMLTL*VDCDIQILNYLQVR
Trigger: CCTCACCTGGAGGTAATTTAAAATTTGAATGTCACAATCTACTCAAAGAGTCAGCATGAGGTGGGTAGGGAGATATGGGAATTTGAATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp TCCCAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCTGGGAATCAAGCTGCCTTTACTaGAAGCCCCAGGGGCAGAAG +
Preference number: 2 (lower is better)
Translates to: SQSSLTVHGGICEVHLWESSCLY*KPQGQK
Trigger: CTTCTGCCCCTGGGGCTTGCAGTAAAGGCAGCTTGA...TTCCCAGAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTGGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp CATGGATCCCAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCCCCTGGAATCCCTTTTaGCTGTTCCCAACAGAAGAC +
Preference number: 2 (lower is better)
Translates to: HGSQSSLTVHGGICEVHLPWNPF*LFPTED
Trigger: GTCTTCTGTTGGGAACAGGCAAAAGGGATTCCAGGG...GAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTGGGATCCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CCCATGCCTTTCCCCAAGTTCCTGGAGCATCTACAGGAACACAGGTATCTGATGGGGAAGCTGCTGCCCTaGCCAGGTCATTCTCCACAT +
Preference number: 2 (lower is better)
Translates to: PMPFPKFLEHLQEHRYLMGKLLP*PGHSPH
Trigger: ATGTGGAGAATGACCTGGCCAGGGCAGCAGCTTCCC...CATCAGATACCTGTGTTCCTGTAGATGCTCCAGGAACTTGGGGAAAGGCATGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp GCATGTCCCCAATGCTCCAACACGATAGCAGCTGAAAGATGTCAGCTGCTCAAAGTGGGATCTGTGAGGTaGACCTCTGGGAAGCTGCTG +
Preference number: 2 (lower is better)
Translates to: ACPQCSNTIAAERCQLLKVGSVR*TSGKLL
Trigger: CAGCAGCTTCCCAGAGGTGCACCTCACAGATCCCAC...TTTGAGCAGCTGACATCTTTCAGCTGCTATCGTGTTGGAGCATTGGGGACATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CATGGATCCCAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCGAGCAAGCAAATAAATaGCCACTCATACTAGAAAGC +
Preference number: 2 (lower is better)
Translates to: HGSQSSLTVHGGICEVHLEQANK*PLILES
Trigger: GCTTTCTAGTATGAGTGGCCATTTATTTGCTTGCTC...GAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTGGGATCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp CATGGATCCCAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCTCTTCCTTTTCTGTGTaGATCACATATTCCTATAGG +
Preference number: 2 (lower is better)
Translates to: HGSQSSLTVHGGICEVHLSSFSV*ITYSYR
Trigger: CCTATAGGAATATGTGATGCACACAGAAAAGGAAGA...GAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTGGGATCCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp GTGCTGAAGAATGTCCAGTTTACCAGAACAGGTCCTCAAGCTGCCTTTACTGCACTAGAAAGCCACTGGTaGTGGATGCATGCCACAGTG +
Preference number: 2 (lower is better)
Translates to: VLKNVQFTRTGPQAAFTALESHW*WMHATV
Trigger: CACTGTGGCATGCATCCACCACCAGTGGCTTTCTAG...TGCAGTAAAGGCAGCTTGAGGACCTGTTCTGGTAAACTGGACATTCTTCAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp TGTTACCAGGGAAATCTGTCAAAGACACAACTTCCTTGGGGTCTAGACATTGTCAGTGAAGTCAGCCCATaGATCCCAGAGCAGCCTCAC +
Preference number: 2 (lower is better)
Translates to: CYQGNLSKTQLPWGLDIVSEVSP*IPEQPH
Trigger: GTGAGGCTGCTCTGGGATCCATGGGCTGACTTCACT...GACAATGTCTAGACCCCAAGGAAGTTGTGTCTTTGACAGATTTCCCTGGTAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTGAAAGCCACTGGTGGTaGATGCATGCCACAGTGTAC +
Preference number: 2 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFESHWW*MHATVY
Trigger: GTACACTGTGGCATGCATCCACCACCAGTGGCTTTC...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTCCCTGGAATCCCTTTTaGCTGTTCCCAACAGAAGAC +
Preference number: 2 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCPWNPF*LFPTED
Trigger: GTCTTCTGTTGGGAACAGGCAAAAGGGATTCCAGGG...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCATACTAGAAAGCCACTaGTGGTGGATGCATGCCACA +
Preference number: 2 (lower is better)
Translates to: LGRTQDARIIPKLSIPISILESH*WWMHAT
Trigger: TGTGGCATGCATCCACCACCAGTGGCTTTCTAGTAT...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCCTTTCCCCAAGTTCCTaGAGCATCTACAGGAACACA +
Preference number: 2 (lower is better)
Translates to: LGRTQDARIIPKLSIPISLSPSS*SIYRNT
Trigger: TGTGTTCCTGTAGATGCTCCAGGAACTTGGGGAAAG...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR TCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCCTTGCAGGTTCATTGTaGCTGCCCTTGATCAATCTA +
Preference number: 2 (lower is better)
Translates to: LGRTQDARIIPKLSIPISLAGSL*LPLINL
Trigger: TAGATTGATCAAGGGCAGTCACAATGAACCTGCAAG...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR TCA 90 bp CTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAATCTACCACCAGCCTTTaGGACTTACTGAGGTGTGAC +
Preference number: 2 (lower is better)
Translates to: LTTPLRYTSKTYTHPLKESTTSL*DLLRCD
Trigger: GTCACACCTCAGTAAGTCTCAAAGGCTGGTGGTAGA...TTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR-3UTR CCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTGAAAGCCACTGGTGGTaGATGCATGCCACAGTGTAC +
Preference number: 2 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSESHWW*MHATVY
Trigger: GTACACTGTGGCATGCATCCACCACCAGTGGCTTTC...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp GGGAGAGCAGAAATTAATGGAACCCACCATTCCAAAAAGTACAGGCCAAGAGAAGCTGAGGCTTCCTCTTaGAGCCATTATGAAGTGCTT +
Preference number: 2 (lower is better)
Translates to: GRAEINGTHHSKKYRPREAEASS*SHYEVL
Trigger: AAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC...TTCTCTTGGCCTGTACTTTTTGGAATGGTGGGTTCCATTAATTTCTGCTCTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp GCATGTCCCCAATGCTCCAACACGATAGCAGCTGAAAGATGTCAGCTGCTCAAACATTCACCTAGGTTTTaGCTAACCCATCATATCTCA +
Preference number: 2 (lower is better)
Translates to: ACPQCSNTIAAERCQLLKHSPRF*LTHHIS
Trigger: TGAGATATGATGGGTTAGCCAAAACCTAGGTGAATG...TTTGAGCAGCTGACATCTTTCAGCTGCTATCGTGTTGGAGCATTGGGGACATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR TCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCTTCAAAGGACTCTCATaGCCCAATTCTGGTCATTCA +
Preference number: 2 (lower is better)
Translates to: LGRTQDARIIPKLSIPISFKGLS*PNSGHS
Trigger: TGAATGACCAGAATTGGGTCATGAGAGTCCTTTGAA...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR TCA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAAGTGGATATATTCCCTaGGGAGGTGTAGAGAGCCTC +
Preference number: 2 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLSGYIP*GGVESL
Trigger: GAGGCTCTCTACACCTCCTCAGGGAATATATCCACT...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR-3UTR TCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCAACACTTCAGCTGTCTaGTGTTCTTTGCCCATTTCA +
Preference number: 2 (lower is better)
Translates to: LGRTQDARIIPKLSIPISNTSAV*CSLPIS
Trigger: TGAAATGGGCAAAGAACATCAGACAGCTGAAGTGTT...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGACATGGGTAAAATGTTaGAGGGATTCTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVTWVKC*RDSQNL
Trigger: AAGGTTCTGAGAATCCCTGCAACATTTTACCCATGT...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp TCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTGAAAGCCACTGGTGGTaGATGCATGCCACAGTGTAC +
Preference number: 2 (lower is better)
Translates to: SHIPIGAQDFPLIKSHVAESHWW*MHATVY
Trigger: GTACACTGTGGCATGCATCCACCACCAGTGGCTTTC...AGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 90 bp ATTTCTCCCTTACTTTCCTTCTTAGACTCCTCCGAGTCACAGTCATaGCCCATACATTACTTGTTCCCTGCCCCCAAGAATAAAACTAAA +
Preference number: 2 (lower is better)
Translates to: ISPLLSFLDSSESQS*PIHYLFPAPKNKTK
Trigger: TTTAGTTTTATTCTTGGGGGCAGGGAACAAGTAATGTATGGGCAATGACTGTGACTCGGAGGAGTCTAAGAAGGAAAGTAAGGGAGAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CAATGCAGTTATCTCAATTCATTCATGAAGACTGAAGACTATAGGAATCCTCATCTAGAAAGCCACTGGTaGTGGATGCATGCCACAGTG +
Preference number: 2 (lower is better)
Translates to: QCSYLNSFMKTEDYRNPHLESHW*WMHATV
Trigger: CACTGTGGCATGCATCCACCACCAGTGGCTTTCTAG...ATGAGGATTCCTATAGTCTTCAGTCTTCATGAATGAATTGAGATAACTGCATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCAATACTAGAAAGCCACTaGTGGTGGATGCATGCCACA +
Preference number: 2 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSILESH*WWMHAT
Trigger: TGTGGCATGCATCCACCACCAGTGGCTTTCTAGTAT...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp TCCTTTTCTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATATACTAGAAAGCCACTaGTGGTGGATGCATGCCACA +
Preference number: 2 (lower is better)
Translates to: SFSVCITYSYRGSRFPFNILESH*WWMHAT
Trigger: TGTGGCATGCATCCACCACCAGTGGCTTTCTAGTAT...ATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAGAAAAGGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CTTCCCAGGCATAATCTCTGCTACATAAGATTGTCTGTCATTCAACACCCAGCAGAGCAAGCAAATAAATaGCCACTCATACTAGAAAGC +
Preference number: 2 (lower is better)
Translates to: LPRHNLCYIRLSVIQHPAEQANK*PLILES
Trigger: GCTTTCTAGTATGAGTGGCCATTTATTTGCTTGCTC...TGCTGGGTGTTGAATGACAGACAATCTTATGTAGCAGAGATTATGCCTGGGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCAGCTGAGGCTTCCTCTTaGAGCCATTATGAAGTGCTT +
Preference number: 2 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSAEASS*SHYEVL
Trigger: AAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 90 bp GTACTGACAAATAGAGAGATGTATCTTCAAGAGAGTGGTTGGACATaGAATCTGAGTATCAGAAGTGCCGCATGCATCGCTTTGAATAGA +
Preference number: 2 (lower is better)
Translates to: VLTNREMYLQESGWT*NLSIRSAACIALNR
Trigger: TCTATTCAAAGCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGAAGATACATCTCTCTATTTGTCAGTAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR-3UTR TCA 90 bp CTTCCCAGGCATAATCTCTGCTACATAAGATTGTCTGTCATTCAACACCCAGCATTCCAGGGTATTAACTaGAATAGACTTTCTGTTTCC +
Preference number: 2 (lower is better)
Translates to: LPRHNLCYIRLSVIQHPAFQGIN*NRLSVS
Trigger: GGAAACAGAAAGTCTATTTCAGTTAATACCCTGGAA...TGCTGGGTGTTGAATGACAGACAATCTTATGTAGCAGAGATTATGCCTGGGAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp TTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGAGGCTTCCTACATGGGTAAAATGTTaGAGGGATTCTCAGAACCTT +
Preference number: 2 (lower is better)
Translates to: LSTTSIKGATLKSLLRLPTWVKC*RDSQNL
Trigger: AAGGTTCTGAGAATCCCTGCAACATTTTACCCATGT...AGGAAGCCTCAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR TCA 90 bp TCCTTTTCTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAGTGCTTATCAGAGGTaGAATGTTTACTCTCTAGGC +
Preference number: 2 (lower is better)
Translates to: SFSVCITYSYRGSRFPFNSAYQR*NVYSLG
Trigger: GCCTAGAGAGTAAACATTTCACCTCTGATAAGCACT...ATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAGAAAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTGAGCAAGCAAATAAATaGCCACTCATACTAGAAAGC +
Preference number: 2 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSEQANK*PLILES
Trigger: GCTTTCTAGTATGAGTGGCCATTTATTTGCTTGCTC...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGGCTGAGGCTTCCTCTTaGAGCCATTATGAAGTGCTT +
Preference number: 2 (lower is better)
Translates to: FHFGLEKEVILSCTRETKAEASS*SHYEVL
Trigger: AAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGCATGGTCTTGACAACTaGGGGCATCTTCCTTTTCTG +
Preference number: 2 (lower is better)
Translates to: FHFGLEKEVILSCTRETKHGLDN*GHLPFL
Trigger: CAGAAAAGGAAGATGCCCCCAGTTGTCAAGACCATG...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp ACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAACAGAATCTTCAAGAGAGTGGTTaGACATTGAATCTGAGTATC +
Preference number: 2 (lower is better)
Translates to: TPLRYTSKTYTHPLKEQNLQESG*TLNLSI
Trigger: GATACTCAGATTCAATGTCCAACCACTCTCTTGAAG...ATTCTGTTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR-3UTR CCA 90 bp CATTTTTCTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTGTATCTTCAAGAGAGTaGTTGGACATTGAATCTGAG +
Preference number: 2 (lower is better)
Translates to: HFSDNSIEIYLQDIHSPTVSSRE*LDIESE
Trigger: CTCAGATTCAATGTCCAACCACTCTCTTGAAGATAC...AGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAGAAAAATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR-3UTR TCA 90 bp GTATTAACTGAAATAGACTTTCTGTTTCCCACAAGTCATGGGAAGCAAGAATTGAGTGCTTATCAGAGGTaGAATGTTTACTCTCTAGGC +
Preference number: 2 (lower is better)
Translates to: VLTEIDFLFPTSHGKQELSAYQR*NVYSLG
Trigger: GCCTAGAGAGTAAACATTTCACCTCTGATAAGCACT...CAATTCTTGCTTCCCATGACTTGTGGGAAACAGAAAGTCTATTTCAGTTAATAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp CTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAAGCAAGATTAATGTGTTaGTTTCTCACATTTCACATC +
Preference number: 2 (lower is better)
Translates to: LTTPLRYTSKTYTHPLKEARLMC*FLTFHI
Trigger: GATGTGAAATGTGAGAAAGCAACACATTAATCTTGC...TTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 90 bp TCTGTCATTCAACACCCAGCAATAGGCATGTGGATTCCTTCTATTTaGTCTACTGTGGATACAAAAGTTGATACGAAATGTGATCTTCAT +
Preference number: 2 (lower is better)
Translates to: SVIQHPAIGMWIPSI*STVDTKVDTKCDLH
Trigger: ATGAAGATCACATTTCGTATCAACTTTTGTATCCACAGTAGACAAAATAGAAGGAATCCACATGCCTATTGCTGGGTGTTGAATGACAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR-3UTR GCA 90 bp CATGAATACAAACACAGTAGATGGGATAATGTAAAACCCTCCACTAGAGTATTGGGAGCCATTATGAAGTaGTTATCAGAGGTGAAATGT +
Preference number: 2 (lower is better)
Translates to: HEYKHSRWDNVKPSTRVLGAIMK*LSEVKC
Trigger: ACATTTCACCTCTGATAAGCACTTCATAATGGCTCC...CAATACTCTAGTGGAGGGTTTTACATTATCCCATCTACTGTGTTTGTATTCATG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CCA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTATTTTGTACCACTAATTaGCCTAAATATCAGAACGAG +
Preference number: 2 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLFCTTN*PKYQNE
Trigger: CTCGTTCTGATATTTAGGCCAATTAGTGGTACAAAA...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 90 bp TTATTGCACATCCACTTTCCATTTGTGGTTCTTGAACAGCATCTTTaGTTTGAGAGGATCACTCTTCATTTGGTAGCATATGAAAATTCT +
Preference number: 2 (lower is better)
Translates to: LLHIHFPFVVLEQHL*FERITLHLVAYENS
Trigger: AGAATTTTCATATGCTACCAAATGAAGAGTGATCCTCTCAAACAAAAGATGCTGTTCAAGAACCACAAATGGAAAGTGGATGTGCAATAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CCA 72 bp CTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCTaGGAAGCTGCTGCCCTGGCCAGGTCATTCTCCACA +
Preference number: 3 (lower is better)
Translates to: LTVHGGICEVHL*EAAALARSFST
Trigger: TGTGGAGAATGACCTGGCCAGGGCAGCAGCTTCCCAGAGGTGCACCTCACAGATCCCACCATGCACAGTGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR CCA 72 bp GACTACAAAGGGGTCCATGTCTCAGGCACCTGCTCCTaGGACTCTGTGTTATTTCCAGGGTGCACAGCTCCA +
Preference number: 3 (lower is better)
Translates to: DYKGVHVSGTCS*DSVLFPGCTAP
Trigger: TGGAGCTGTGCACCCTGGAAATAACACAGAGTCCCAGGAGCAGGTGCCTGAGACATGGACCCCTTTGTAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 72 bp CACCTCTTCCAATCAGGCTCATACCTGAAATGTAAGTaGAGTCAGCCCATGGATCCCAGAGCAGCCTCACTG +
Preference number: 3 (lower is better)
Translates to: HLFQSGSYLKCK*SQPMDPRAASL
Trigger: CAGTGAGGCTGCTCTGGGATCCATGGGCTGACTTCACTTACATTTCAGGTATGAGCCTGATTGGAAGAGGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR TCA 72 bp CAAGCACAGTCTAGTCTGAGCAACTTCTCAACAGCTTaGGTCATGAGTGCTCCAAGATCTTGCCCCCATGCC +
Preference number: 3 (lower is better)
Translates to: QAQSSLSNFSTA*VMSAPRSCPHA
Trigger: GGCATGGGGGCAAGATCTTGGAGCACTCATGACTCAAGCTGTTGAGAAGTTGCTCAGACTAGACTGTGCTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR GCA 72 bp GCCACTCATACTAGAAAGCCACTGGTGGTGGATGCATaGCACAGTGTACGCAGGAGACAGAATTCTGCTAGT +
Preference number: 3 (lower is better)
Translates to: ATHTRKPLVVDA*HSVRRRQNSAS
Trigger: ACTAGCAGAATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR GCA 72 bp GAAGAATGTCCAGTTTACCAGAACAGGTCCTCAAGCTaGCTTTACTGCAAGCCCCAGGGGCAGAAGACTATT +
Preference number: 3 (lower is better)
Translates to: EECPVYQNRSSS*LYCKPQGQKTI
Trigger: AATAGTCTTCTGCCCCTGGGGCTTGCAGTAAAGGCAGCTTGAGGACCTGTTCTGGTAAACTGGACATTCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR CCA 72 bp GTGCATCAGAAGCCTGTAGTAATCCATCCAACACAATaGGGCATCTGTGCCTCTCCCCGAAAAACAAGAACT +
Preference number: 3 (lower is better)
Translates to: VHQKPVVIHPTQ*GICASPRKTRT
Trigger: AGTTCTTGTTTTTCGGGGAGAGGCACAGATGCCCCATTGTGTTGGATGGATTACTACAGGCTTCTGATGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 72 bp GTATCTGATGTCACCTCTTCCAATCAGGCTCATACCTaGAATGTAAGTGAAGTCAGCCCATGGATCCCAGAG +
Preference number: 3 (lower is better)
Translates to: VSDVTSSNQAHT*NVSEVSPWIPE
Trigger: CTCTGGGATCCATGGGCTGACTTCACTTACATTTCAGGTATGAGCCTGATTGGAAGAGGTGACATCAGATAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR TCA 72 bp TCTAGCATGTCCCCAATGCTCCAACACGATAGCAGCTaGAAGATGTCAGCTGCTCAAAATTGGCACTTCAGT +
Preference number: 3 (lower is better)
Translates to: SSMSPMLQHDSS*KMSAAQNWHFS
Trigger: ACTGAAGTGCCAATTTTGAGCAGCTGACATCTTTCAGCTGCTATCGTGTTGGAGCATTGGGGACATGCTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CAA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTGCCCTGGAATCCCTTTaGCCTGTTCCCAACAGAAGA +
Preference number: 3 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSALESL*PVPNRR
Trigger: TCTTCTGTTGGGAACAGGCAAAAGGGATTCCAGGGC...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CAA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTGCCCTGGAATCCCTTTaGCCTGTTCCCAACAGAAGA +
Preference number: 3 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGAALESL*PVPNRR
Trigger: TCTTCTGTTGGGAACAGGCAAAAGGGATTCCAGGGC...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR-3UTR CAA 90 bp CTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAACTGATTTCCCTATGTTaGCAGAGTTCTACCACCAGC +
Preference number: 3 (lower is better)
Translates to: LTTPLRYTSKTYTHPLKELISLC*QSSTTS
Trigger: GCTGGTGGTAGAACTCTGCAAACATAGGGAAATCAG...TTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR TCA 72 bp TACACGTGTGTTTCATTAAACAAAGCAAAGCGGCGATaGAACGGGGTCACATCAATAGCAGTGTGCATCAGA +
Preference number: 3 (lower is better)
Translates to: YTCVSLNKAKRR*NGVTSIAVCIR
Trigger: TCTGATGCACACTGCTATTGATGTGACCCCGTTTCATCGCCGCTTTGCTTTGTTTAATGAAACACACGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 72 bp TTAGTTGTACTAGAGAGACCAAGACCCCAGAGGTCTTaGGTGGCTGTGGATAGAGTAAGTCTTCCTTTTTAT +
Preference number: 3 (lower is better)
Translates to: LVVLERPRPQRS*VAVDRVSLPFY
Trigger: ATAAAAAGGAAGACTTACTCTATCCACAGCCACCCAAGACCTCTGGGGTCTTGGTCTCTCTAGTACAACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR CCA 72 bp GGATCAACCTCCAAAGACCTGTACCAAAGAGAGTCATaGTTGCCTTATGTGCTACTGTATGACTCTATTTGC +
Preference number: 3 (lower is better)
Translates to: GSTSKDLYQRES*LPYVLLYDSIC
Trigger: GCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGGTACAGGTCTTTGGAGGTTGATCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CAA 90 bp GTATTAACTGAAATAGACTTTCTGTTTCCCACAAGTCATGGGAAGCAAGAATTGGCCCTGGAATCCCTTTaGCCTGTTCCCAACAGAAGA +
Preference number: 3 (lower is better)
Translates to: VLTEIDFLFPTSHGKQELALESL*PVPNRR
Trigger: TCTTCTGTTGGGAACAGGCAAAAGGGATTCCAGGGC...CAATTCTTGCTTCCCATGACTTGTGGGAAACAGAAAGTCTATTTCAGTTAATAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR TCA 72 bp CAAGGGGCAACCTTTATGTATCTGGCAGAGACGTACTaGCAAATAGAGAGATGTATCTTCAAGAGAGTGGTT +
Preference number: 3 (lower is better)
Translates to: QGATFMYLAETY*QIERCIFKRVV
Trigger: AACCACTCTCTTGAAGATACATCTCTCTATTTGTCAGTACGTCTCTGCCAGATACATAAAGGTTGCCCCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR TCA 72 bp CCCTACCCACCTCATGCTGACTCTTTGAGTAGATTGTaGCATTCAAATTTTAAATTACCTCCAGGTGAGGGT +
Preference number: 3 (lower is better)
Translates to: PYPPHADSLSRL*HSNFKLPPGEG
Trigger: ACCCTCACCTGGAGGTAATTTAAAATTTGAATGTCACAATCTACTCAAAGAGTCAGCATGAGGTGGGTAGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR GCA 72 bp TCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTaGTTATCAGAGGTGAAATGTTTACTCTCTAGGCTT +
Preference number: 3 (lower is better)
Translates to: SLLRLPLGAIMK*LSEVKCLLSRL
Trigger: AAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR GCA 72 bp AGACCCCATGCTAGATTTTTCTTTGGATTTCACTGTTaGCGCTACTCTCTTCCTTGGAACTCAAATTGCCAT +
Preference number: 3 (lower is better)
Translates to: RPHARFFFGFHC*RYSLPWNSNCH
Trigger: ATGGCAATTTGAGTTCCAAGGAAGAGAGTAGCGGCAACAGTGAAATCCAAAGAAAAATCTAGCATGGGGTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR GCA 72 bp CAACCTCCAAAGACCTGTACCAAAGAGAGTCATGGTTaGCTTATGTGCTACTGTATGACTCTATTTGCCTTT +
Preference number: 3 (lower is better)
Translates to: QPPKTCTKESHG*LMCYCMTLFAF
Trigger: AAAGGCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGGTACAGGTCTTTGGAGGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 72 bp ACAGGCCAAGAGAAGCCTAGCCATTCACCTAGGTTTTaGCTAACCCATCATATCTCAATGGAGTTCAAATTA +
Preference number: 3 (lower is better)
Translates to: TGQEKPSHSPRF*LTHHISMEFKL
Trigger: TAATTTGAACTCCATTGAGATATGATGGGTTAGCCAAAACCTAGGTGAATGGCTAGGCTTCTCTTGGCCTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR CCA 72 bp CTGACAAATAGAGAGATGTATCTTCAAGAGAGTGGTTaGACATTGAATCTGAGTATCAGAAGTGCCGCATGC +
Preference number: 3 (lower is better)
Translates to: LTNREMYLQESG*TLNLSIRSAAC
Trigger: GCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGAAGATACATCTCTCTATTTGTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CCA 72 bp TGTTACCAGGGAAATCTGTCAAAGACACAACTTCCTTaGGGTCTAGACATTGTCACCTACATTGATAGCATC +
Preference number: 3 (lower is better)
Translates to: CYQGNLSKTQLP*GLDIVTYIDSI
Trigger: GATGCTATCAATGTAGGTGACAATGTCTAGACCCCAAGGAAGTTGTGTCTTTGACAGATTTCCCTGGTAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 72 bp AGTCGCTTATTTGTTCAGCCCCAAAGGCATAAGATATaGCATGGAAAGTCATATCTCCAATGTTACCAGGGA +
Preference number: 3 (lower is better)
Translates to: SRLFVQPQRHKI*HGKSYLQCYQG
Trigger: TCCCTGGTAACATTGGAGATATGACTTTCCATGCCATATCTTATGCCTTTGGGGCTGAACAAATAAGCGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR-3UTR CAA 90 bp TCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTGCCACTTTGAAGTCTTaGCTGAGGCTTCCTCTTGGA +
Preference number: 3 (lower is better)
Translates to: SHIPIGAQDFPLIKSHVAATLKS*LRLPLG
Trigger: TCCAAGAGGAAGCCTCAGCAAAGACTTCAAAGTGGC...AGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR TCA 72 bp CTATACACCTCCATCAACCAGAGGAAAGAACCCCAATaGCACAATTCCTTCTATCTTTCCTTCTGGTTCTAT +
Preference number: 3 (lower is better)
Translates to: LYTSINQRKEPQ*HNSFYLSFWFY
Trigger: ATAGAACCAGAAGGAAAGATAGAAGGAATTGTGTCATTGGGGTTCTTTCCTCTGGTTGATGGAGGTGTATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR TCA 72 bp CCAAAGAGAGTCATGGTTGCCTTATGTGCTACTGTATaGCTCTATTTGCCTTTAAAAGACTTAGGTTCCCTA +
Preference number: 3 (lower is better)
Translates to: PKRVMVALCATV*LYLPLKDLGSL
Trigger: TAGGGAACCTAAGTCTTTTAAAGGCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 72 bp CGTTGTTTGTACGCTGTGAAGGAAAATAAACTGGCGTaGTGTCACTTATTAATTCAAGTCTCGACGACCAAT +
Preference number: 3 (lower is better)
Translates to: RCLYAVKENKLA*CHLLIQVSTTN
Trigger: ATTGGTCGTCGAGACTTGAATTAATAAGTGACATCACGCCAGTTTATTTTCCTTCACAGCGTACAAACAACG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 72 bp TGCCACATATGCAACCCAGAGCAGTATTTAAGCACGTaGTTTAGTTTTCTCAGACTAACTCTACTGGATTTT +
Preference number: 3 (lower is better)
Translates to: CHICNPEQYLST*FSFLRLTLLDF
Trigger: AAAATCCAGTAGAGTTAGTCTGAGAAAACTAAACCACGTGCTTAAATACTGCTCTGGGTTGCATATGTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR TCA 72 bp CTCATGAAGGAGACTAATTCATTCCAGGGTATTAACTaGAATAGACTTTCTGTTTCCCACAAGTCATGGGAA +
Preference number: 3 (lower is better)
Translates to: LMKETNSFQGIN*NRLSVSHKSWE
Trigger: TTCCCATGACTTGTGGGAAACAGAAAGTCTATTTCAGTTAATACCCTGGAATGAATTAGTCTCCTTCATGAG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR TCA 72 bp TTCCCATATCTCCCTACCCACCTCATGCTGACTCTTTaGGTAGATTGTGACATTCAAATTTTAAATTACCTC +
Preference number: 3 (lower is better)
Translates to: FPYLPTHLMLTL*VDCDIQILNYL
Trigger: GAGGTAATTTAAAATTTGAATGTCACAATCTACTCAAAGAGTCAGCATGAGGTGGGTAGGGAGATATGGGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR TCA 72 bp CCCATCATATCTCAATGGAGTTCAAATTATAGATCATaGAGTCCGGGATGGAAACTGAACTTTCATTTTGGT +
Preference number: 3 (lower is better)
Translates to: PIISQWSSNYRS*SPGWKLNFHFG
Trigger: ACCAAAATGAAAGTTCAGTTTCCATCCCGGACTTCATGATCTATAATTTGAACTCCATTGAGATATGATGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR TCA 72 bp GTGTCACTAATCAAAACACCTTTATTCACACTGCCCTaGATTACACAAGATACGTTCAATGTACTCATTCCT +
Preference number: 3 (lower is better)
Translates to: VSLIKTPLFTLP*ITQDTFNVLIP
Trigger: AGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGCAGTGTGAATAAAGGTGTTTTGATTAGTGACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR-3UTR CAA 90 bp CATGAATACAAACACAGTAGATGGGATAATGTAAAACCCTCCACTAGAGTATTGCTGTGGATACAAAAGTaGATACGAAATGTGATCTTC +
Preference number: 3 (lower is better)
Translates to: HEYKHSRWDNVKPSTRVLLWIQK*IRNVIF
Trigger: GAAGATCACATTTCGTATCAACTTTTGTATCCACAG...CAATACTCTAGTGGAGGGTTTTACATTATCCCATCTACTGTGTTTGTATTCATG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR GCA 72 bp AAAAGATGGATATTTGGGACCACAGTTAAATGTGTTTaGTCCATTTGCAAGAGAGTAAATTTTCATGGAGTT +
Preference number: 3 (lower is better)
Translates to: KRWIFGTTVKCV*SICKRVNFHGV
Trigger: AACTCCATGAAAATTTACTCTCTTGCAAATGGAGCAAACACATTTAACTGTGGTCCCAAATATCCATCTTTT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CCA 72 bp ATACAAAATACTTATTGCACATCCACTTTCCATTTGTaGTTCTTGAACAGCATCTTTTGTTTGAGAGGATCA +
Preference number: 3 (lower is better)
Translates to: IQNTYCTSTFHL*FLNSIFCLRGS
Trigger: TGATCCTCTCAAACAAAAGATGCTGTTCAAGAACCACAAATGGAAAGTGGATGTGCAATAAGTATTTTGTAT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGACGACTGGCTGGGGCATaGAGGCGGTGGGCATCCAAC +
Preference number: 4 (lower is better)
Translates to: PLILESHWWWMHATVYAGRLAGA*RRWASN
Trigger: GTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCG...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTTTCGGGGAGCCTGGGAGCTCCAGCTGGGTCTGGCTaGGCTCCTCTGGGGGCACTC +
Preference number: 4 (lower is better)
Translates to: TWVKCCRDSQNLSGSLGAPAGSG*APLGAL
Trigger: GAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGG...AGCTCCCAGGCTCCCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGCTAGGCGGCGATGCTaGTGCTGCAGAGTCAGGCCA +
Preference number: 4 (lower is better)
Translates to: PLILESHWWWMHATVYAGARRRC*CCRVRP
Trigger: TGGCCTGACTCTGCAGCAGCAGCATCGCCGCCTAGC...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGCACGGCGTAGGCGCTaGGCTCGTTCTCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: PLILESHWWWMHATVYAGARRRR*ARSPGS
Trigger: ACTACCTGGAGAACGAGCCCAGCGCCTACGCCGTGC...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTCTGCTAGTCCCACTTCGTAACACTTaGGCAGCCGACAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: HWWWMHATVYAGDRILLVPLRNT*AADRPG
Trigger: GCCAGGCCTGTCGGCTGCGCAAGTGTTACGAAGTGG...GACTAGCAGAATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CATGGATCCCAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCGGATATGGGAAAGAATaGGAAGGAGCTGAGCTAGGC +
Preference number: 4 (lower is better)
Translates to: HGSQSSLTVHGGICEVHLGYGKE*EGAELG
Trigger: GCCTAGCTCAGCTCCTTCTCATTCTTTCCCATATCC...GAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTGGGATCCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCAGGAAAGGAGACAGCTaGGGCGGCGGGTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SREWLDIESEYQKCRMHRRKGDS*GGGCSS
Trigger: GCTGCTGCACCCGCCGCCGCAGCTGTCTCCTTTCCT...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGCCAGCTGGGTCTGGCTaGGCTCCTCTGGGGGCACTC +
Preference number: 4 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVPAGSG*APLGAL
Trigger: GAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGG...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGCGACTGGCTGGGGCATaGAGGCGGTGGGCATCCAAC +
Preference number: 4 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVRLAGA*RRWASN
Trigger: GTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCG...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp GTGCTGAAGAATGTCCAGTTTACCAGAACAGGTCCTCAAGCTGCCTTTACTGCAGCTAGGCGGCGATGCTaGTGCTGCAGAGTCAGGCCA +
Preference number: 4 (lower is better)
Translates to: VLKNVQFTRTGPQAAFTAARRRC*CCRVRP
Trigger: TGGCCTGACTCTGCAGCAGCAGCATCGCCGCCTAGC...TGCAGTAAAGGCAGCTTGAGGACCTGTTCTGGTAAACTGGACATTCTTCAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTGCTGAAGAATGTCCAGTTTACCAGAACAGGTCCTCAAGCTGCCTTTACTGCAGCACGGCGTAGGCGCTaGGCTCGTTCTCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: VLKNVQFTRTGPQAAFTAARRRR*ARSPGS
Trigger: ACTACCTGGAGAACGAGCCCAGCGCCTACGCCGTGC...TGCAGTAAAGGCAGCTTGAGGACCTGTTCTGGTAAACTGGACATTCTTCAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CCCATGCCTTTCCCCAAGTTCCTGGAGCATCTACAGGAACACAGGTATCTGATGCATGCGGAACCGACTTaGCGTAGCCAGCAACATGTC +
Preference number: 4 (lower is better)
Translates to: PMPFPKFLEHLQEHRYLMHAEPT*RSQQHV
Trigger: GACATGTTGCTGGCTACGTCAAGTCGGTTCCGCATG...CATCAGATACCTGTGTTCCTGTAGATGCTCCAGGAACTTGGGGAAAGGCATGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTTTCGGGCGACTGGCTGGGGCATaGAGGCGGTGGGCATCCAAC +
Preference number: 4 (lower is better)
Translates to: LVIHDMGKMLQGFSEPFGRLAGA*RRWASN
Trigger: GTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCG...CCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCATGTCCCCAATGCTCCAACACGATAGCAGCTGAAAGATGTCAGCTGCTCAAAGGCTTGGCCAAAGGTTaGCAGCCCTCATGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: ACPQCSNTIAAERCQLLKGLAKG*QPSCLL
Trigger: CAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCC...TTTGAGCAGCTGACATCTTTCAGCTGCTATCGTGTTGGAGCATTGGGGACATGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCTCCCCGGGTGTTCCATaGAGCGCCAGACGAGACCAA +
Preference number: 4 (lower is better)
Translates to: SREWLDIESEYQKCRMHRSPGVP*SARRDQ
Trigger: TTGGTCTCGTCTGGCGCTCCATGGAACACCCGGGGA...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp CACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTCTGCTAGTCGAGTCAGGCCAGCTTTaGCCATCAGGTGGATCAAAG +
Preference number: 4 (lower is better)
Translates to: HWWWMHATVYAGDRILLVESGQL*PSGGSK
Trigger: CTTTGATCCACCTGATGGCCAAAGCTGGCCTGACTC...GACTAGCAGAATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 72 bp CTTCTCAACAGCTTGAGTCATGAGTGCTCCAAGATCTaGCCCCCATGCCTTTCCCCAAGTTCCTGGAGCATC +
Preference number: 4 (lower is better)
Translates to: LLNSLSHECSKI*PPCLSPSSWSI
Trigger: GATGCTCCAGGAACTTGGGGAAAGGCATGGGGGCAAGATCTTGGAGCACTCATGACTCAAGCTGTTGAGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGATCGAGAAGGTGGACCTaGTCATGGAGATTCAAGTCC +
Preference number: 4 (lower is better)
Translates to: PLILESHWWWMHATVYAGSRRWT*SWRFKS
Trigger: GGACTTGAATCTCCATGATCAGGTCCACCTTCTCGA...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp GGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGAGGAAAGGAGACAGCTaGGGCGGCGGGTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: GSRFPFNKVTCCYRNASGRKGDS*GGGCSS
Trigger: GCTGCTGCACCCGCCGCCGCAGCTGTCTCCTTTCCT...CCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTAGGCGGCGATGCTGCTaGTGCAGAGTCAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCRRRCC*CRVRPA
Trigger: AGCTGGCCTGACTCTGCAGCAGCAGCATCGCCGCCT...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CATGGATCCCAGAGCAGCCTCACTGTGCATGGTGGGATCTGTGAGGTGCACCTCATTCAGAATAGATCATaGGCGGTTCAGCATCCAACA +
Preference number: 4 (lower is better)
Translates to: HGSQSSLTVHGGICEVHLIQNRS*AVQHPT
Trigger: TGTTGGATGCTGAACCGCCCATGATCTATTCTGAAT...GAGGTGCACCTCACAGATCCCACCATGCACAGTGAGGCTGCTCTGGGATCCATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTTTCGGGGAGCCTGGGAGCTCAAGTCCCCAAAGCCTaGCACTCTCTTTGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: TWVKCCRDSQNLSGSLGAQVPKA*HSLCPV
Trigger: AACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTG...AGCTCCCAGGCTCCCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGTCCCATGCGACTGGCTaGGGCATGAAGGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: EIALSTTSIKGATLKSLLSHATG*GMKAVG
Trigger: GCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGA...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTCCAGCTGGGTCTGGCTaGGCTCCTCTGGGGGCACTC +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGAPAGSG*APLGAL
Trigger: GAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGG...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTAAGTGGAGCTGGTGGTaGCCAGCTGGGTCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: VAKGERELLPRFSPGIPFKWSWW*PAGSGW
Trigger: CCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTT...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTCTGAAGTGGAGCTGGTaGTGGCCAGCTGGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCLKWSW*WPAGSG
Trigger: GCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAG...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAGTGCTGAAGTGGAGCTaGTGGTGGCCAGCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: VFAEASSWSHYEVLIRGEVLKWS*WWPAGS
Trigger: AGACCCAGCTGGCCACCACCAGCTCCACTTCAGCAC...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCGTGCTGAAGTGGAGCTaGTGGTGGCCAGCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: LGRTQDARIIPKLSIPISVLKWS*WWPAGS
Trigger: AGACCCAGCTGGCCACCACCAGCTCCACTTCAGCAC...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTCTCTCTTTGCCCAGTTaGTCATATGAACCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: LESHWWWMHATVYAGDRILSLPS*SYEPAP
Trigger: GGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAG...AATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTGGATATGGGAAAGAATaGGAAGGAGCTGAGCTAGGC +
Preference number: 4 (lower is better)
Translates to: LESHWWWMHATVYAGDRIGYGKE*EGAELG
Trigger: GCCTAGCTCAGCTCCTTCTCATTCTTTCCCATATCC...AATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTCCACTTCGTAACACTTaGGCAGCCGACAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFPLRNT*AADRPG
Trigger: GCCAGGCCTGTCGGCTGCGCAAGTGTTACGAAGTGG...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAATCCAGCTCGTTCCCTTaGATCTGGTGCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: VFAEASSWSHYEVLIRGESSSFP*IWCSKA
Trigger: GGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGA...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTTCCCCGGGTGTTCCATaGAGCGCCAGACGAGACCAA +
Preference number: 4 (lower is better)
Translates to: VAKGERELLPRFSPGIPFSPGVP*SARRDQ
Trigger: TTGGTCTCGTCTGGCGCTCCATGGAACACCCGGGGA...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTCTGCTAGTCCTCATGTGCCGGATATaGGAAAGAATGAGAAGGAGC +
Preference number: 4 (lower is better)
Translates to: HWWWMHATVYAGDRILLVLMCRI*ERMRRS
Trigger: GCTCCTTCTCATTCTTTCCCATATCCGGCACATGAG...GACTAGCAGAATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp AGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCCTGGTGGTGGCCAGCTaGGTCTGGCTGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: RGSRFPFNKVTCCYRNASLVVAS*VWLGSS
Trigger: AGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAG...GCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATTCTGCTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTCTGGTGGTGGCCAGCTaGGTCTGGCTGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: ILLVIHDMGKMLQGFSEPLVVAS*VWLGSS
Trigger: AGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAG...AGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAGCAGAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTGTGCTGAAGTGGAGCTaGTGGTGGCCAGCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: VAKGERELLPRFSPGIPFVLKWS*WWPAGS
Trigger: AGACCCAGCTGGCCACCACCAGCTCCACTTCAGCAC...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGCGCCCTCGGGGTAGTTaGACACAGTGGGCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: EIALSTTSIKGATLKSLLRPRGS*TQWACC
Trigger: ACAGCAAGCCCACTGTGTTCAACTACCCCGAGGGCG...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTTCCCAGGCATAATCTCTGCTACATAAGATTGTCTGTCATTCAACACCCAGCAAGAATGAGAAGGAGCTaGGCTAGGCGGCGATGCTGC +
Preference number: 4 (lower is better)
Translates to: LPRHNLCYIRLSVIQHPARMRRS*ARRRCC
Trigger: GCAGCATCGCCGCCTAGCTCAGCTCCTTCTCATTCT...TGCTGGGTGTTGAATGACAGACAATCTTATGTAGCAGAGATTATGCCTGGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TCCTTTTCTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAGGAAAGGAGACAGCTaGGGCGGCGGGTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: SFSVCITYSYRGSRFPFNRKGDS*GGGCSS
Trigger: GCTGCTGCACCCGCCGCCGCAGCTGTCTCCTTTCCT...ATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAGAAAAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGGGCACCTGCTGGCCGTaGGGGTGCAGGAAAGGAGAC +
Preference number: 4 (lower is better)
Translates to: PIGAQDFPLIKSHVAIGMGTCWP*GCRKGD
Trigger: GTCTCCTTTCCTGCACCCGCACGGCCAGCAGGTGCC...CATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAACCACTTCGTAACACTTaGGCAGCCGACAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: LTTPLRYTSKTYTHPLKEPLRNT*AADRPG
Trigger: GCCAGGCCTGTCGGCTGCGCAAGTGTTACGAAGTGG...TTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR GCA 90 bp CTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTACAAACTCTTCTCCCTaGAGGTTCATCATGCGGAAC +
Preference number: 4 (lower is better)
Translates to: LESHWWWMHATVYAGDRITNSSP*RFIMRN
Trigger: GTTCCGCATGATGAACCTGCAGGGAGAAGAGTTTGT...AATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TGTTTACTCTCTAGGCTTGGGTCTCAACAAGTAGCTTCAATGCAGTTATCTCAAAGGCGGCGATGCTGCTaGTGCAGAGTCAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: CLLSRLGSQQVASMQLSQRRRCC*CRVRPA
Trigger: AGCTGGCCTGACTCTGCAGCAGCAGCATCGCCGCCT...TTGAGATAACTGCATTGAAGCTACTTGTTGAGACCCAAGCCTAGAGAGTAAACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCTCCATTCCCGAGGCTTTaGTGTGAAGGGTCATGGTCA +
Preference number: 4 (lower is better)
Translates to: QESGWTLNLSIRSAACIAPFPRL*CEGSWS
Trigger: TGACCATGACCCTTCACACCAAAGCCTCGGGAATGG...AGCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTCCAGCTCGTTCCCTTaGATCTGGTGCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCSSSFP*IWCSKA
Trigger: GGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGA...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAGCACGGCGTAGGCGCTaGGCTCGTTCTCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLARRRR*ARSPGS
Trigger: ACTACCTGGAGAACGAGCCCAGCGCCTACGCCGTGC...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTGGCTTGGCCAAAGGTTaGCAGCCCTCATGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFGLAKG*QPSCLL
Trigger: CAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCC...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGTCCCATGCGACTGGCTaGGGCATGAAGGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: PIGAQDFPLIKSHVAIGMSHATG*GMKAVG
Trigger: GCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGA...CATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCCATGGCAGGCTCTCTTaGCCTTGGTTAGAGAGTGCA +
Preference number: 4 (lower is better)
Translates to: SREWLDIESEYQKCRMHRHGRLS*PWLESA
Trigger: TGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATG...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR GCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTCCACTTCGTAACACTTaGGCAGCCGACAGGCCTGGC +
Preference number: 4 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSPLRNT*AADRPG
Trigger: GCCAGGCCTGTCGGCTGCGCAAGTGTTACGAAGTGG...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAACCATTCCCGAGGCTTTaGTGTGAAGGGTCATGGTCA +
Preference number: 4 (lower is better)
Translates to: VFAEASSWSHYEVLIRGEPFPRL*CEGSWS
Trigger: TGACCATGACCCTTCACACCAAAGCCTCGGGAATGG...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GGGAGAGCAGAAATTAATGGAACCCACCATTCCAAAAAGTACAGGCCAAGAGAATCGTTCCCTTGGATCTaGTGCAGCAAGGCCATTCCC +
Preference number: 4 (lower is better)
Translates to: GRAEINGTHHSKKYRPRESFPWI*CSKAIP
Trigger: GGGAATGGCCTTGCTGCACCAGATCCAAGGGAACGA...TTCTCTTGGCCTGTACTTTTTGGAATGGTGGGTTCCATTAATTTCTGCTCTCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAAGCACGGCGTAGGCGCTaGGCTCGTTCTCCAGGTAGT +
Preference number: 4 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQARRRR*ARSPGS
Trigger: ACTACCTGGAGAACGAGCCCAGCGCCTACGCCGTGC...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGATTGTCAATGGTGCATTaGTTTGTAGCTGGACACATG +
Preference number: 4 (lower is better)
Translates to: PLILESHWWWMHATVYAGLSMVH*FVAGHM
Trigger: CATGTGTCCAGCTACAAACCAATGCACCATTGACAA...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAACAAGTCCCCAAAGCCTaGCACTCTCTTTGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: VFAEASSWSHYEVLIRGEQVPKA*HSLCPV
Trigger: AACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTG...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTTCCCCGGGTGTTCCATaGAGCGCCAGACGAGACCAA +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGASPGVP*SARRDQ
Trigger: TTGGTCTCGTCTGGCGCTCCATGGAACACCCGGGGA...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAGGACACGGTGGATGTaGTCCTTCTCTTCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVRTRWM*SFSSRD
Trigger: GTCTCTGGAAGAGAAGGACCACATCCACCGTGTCCT...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCATGTCCCCAATGCTCCAACACGATAGCAGCTGAAAGATGTCAGCTGCTCAAACTCATGTGCCGGATATaGGAAAGAATGAGAAGGAGC +
Preference number: 4 (lower is better)
Translates to: ACPQCSNTIAAERCQLLKLMCRI*ERMRRS
Trigger: GCTCCTTCTCATTCTTTCCCATATCCGGCACATGAG...TTTGAGCAGCTGACATCTTTCAGCTGCTATCGTGTTGGAGCATTGGGGACATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TCCTTTTCTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATCTGAAGTGGAGCTGGTaGTGGCCAGCTGGGTCTGGC +
Preference number: 4 (lower is better)
Translates to: SFSVCITYSYRGSRFPFNLKWSW*WPAGSG
Trigger: GCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAG...ATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAGAAAAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTGGGGCGTACTCAGGATGCCAGGATAATTCCTAAACTCTCTATTCCTATTTCCGCCCAGTTGATCATATaGACCAGCTCCCTATCTGCT +
Preference number: 4 (lower is better)
Translates to: LGRTQDARIIPKLSIPISAQLII*TSSLSA
Trigger: AGCAGATAGGGAGCTGGTTCATATGATCAACTGGGC...GGAAATAGGAATAGAGAGTTTAGGAATTATCCTGGCATCCTGAGTACGCCCCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAACTCTCTTTGCCCAGTTaGTCATATGAACCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: VFAEASSWSHYEVLIRGELSLPS*SYEPAP
Trigger: GGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAG...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGAGGAAAGGAGACAGCTaGGGCGGCGGGTGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: FHFGLEKEVILSCTRETKRKGDS*GGGCSS
Trigger: GCTGCTGCACCCGCCGCCGCAGCTGTCTCCTTTCCT...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp GTGCTGAAGAATGTCCAGTTTACCAGAACAGGTCCTCAAGCTGCCTTTACTGCAACAAACTCTTCTCCCTaGAGGTTCATCATGCGGAAC +
Preference number: 4 (lower is better)
Translates to: VLKNVQFTRTGPQAAFTATNSSP*RFIMRN
Trigger: GTTCCGCATGATGAACCTGCAGGGAGAAGAGTTTGT...TGCAGTAAAGGCAGCTTGAGGACCTGTTCTGGTAAACTGGACATTCTTCAGCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp ATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCAGGCGGCGATGCTGCTaGTGCAGAGTCAGGCCAGCT +
Preference number: 4 (lower is better)
Translates to: ITYSYRGSRFPFNKVTCCRRRCC*CRVRPA
Trigger: AGCTGGCCTGACTCTGCAGCAGCAGCATCGCCGCCT...GCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTTCCAGCTCGTTCCCTTaGATCTGGTGCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSSSSFP*IWCSKA
Trigger: GGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGA...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CATTTTTCTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTCCAGCTCGTTCCCTTaGATCTGGTGCAGCAAGGCC +
Preference number: 4 (lower is better)
Translates to: HFSDNSIEIYLQDIHSPTSSSFP*IWCSKA
Trigger: GGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGA...AGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAGAAAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTGGCTTGGCCAAAGGTTaGCAGCCCTCATGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSGLAKG*QPSCLL
Trigger: CAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCC...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CATTTTTCTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTGGCTTGGCCAAAGGTTaGCAGCCCTCATGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: HFSDNSIEIYLQDIHSPTGLAKG*QPSCLL
Trigger: CAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCC...AGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAGAAAAATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTAATCACAAGAGGGCTTaGCCAAAGGTTGGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: VAKGERELLPRFSPGIPFNHKRA*PKVGSP
Trigger: AGGGCTGCCAACCTTTGGCCAAGCCCTCTTGTGATT...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTCAAGTCCCCAAAGCCTaGCACTCTCTTTGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: VAKGERELLPRFSPGIPFQVPKA*HSLCPV
Trigger: AACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTG...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTTTCGGGTTGTCCAGGACACGGTaGATGTGGTCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: LVIHDMGKMLQGFSEPFGLSRTR*MWSFSS
Trigger: GGAAGAGAAGGACCACATCCACCGTGTCCTGGACAA...CCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTTTGTCCAGGACACGGTaGATGTGGTCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFLSRTR*MWSFSS
Trigger: GGAAGAGAAGGACCACATCCACCGTGTCCTGGACAA...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTGAGTCAGGCCAGCTTTaGCCATCAGGTGGATCAAAG +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCESGQL*PSGGSK
Trigger: CTTTGATCCACCTGATGGCCAAAGCTGGCCTGACTC...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGTCCCATGCGACTGGCTaGGGCATGAAGGCGGTGGGC +
Preference number: 4 (lower is better)
Translates to: FHFGLEKEVILSCTRETKSHATG*GMKAVG
Trigger: GCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGA...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAATGCAGTTATCTCAATTCATTCATGAAGACTGAAGACTATAGGAATCCTCATCTGGTGGTGGCCAGCTaGGTCTGGCTGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: QCSYLNSFMKTEDYRNPHLVVAS*VWLGSS
Trigger: AGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAG...ATGAGGATTCCTATAGTCTTCAGTCTTCATGAATGAATTGAGATAACTGCATTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCAAGTGGAGCTGGTGGTaGCCAGCTGGGTCTGGCTGG +
Preference number: 4 (lower is better)
Translates to: ITYSYRGSRFPFNKVTCCKWSWW*PAGSGW
Trigger: CCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTT...GCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CATGAATACAAACACAGTAGATGGGATAATGTAAAACCCTCCACTAGAGTATTGCGCCCTCGGGGTAGTTaGACACAGTGGGCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: HEYKHSRWDNVKPSTRVLRPRGS*TQWACC
Trigger: ACAGCAAGCCCACTGTGTTCAACTACCCCGAGGGCG...CAATACTCTAGTGGAGGGTTTTACATTATCCCATCTACTGTGTTTGTATTCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTCATGCGGAACCGACTTaGCGTAGCCAGCAACATGTC +
Preference number: 4 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSHAEPT*RSQQHV
Trigger: GACATGTTGCTGGCTACGTCAAGTCGGTTCCGCATG...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTTTCGGGGGATCAAAGTGTCTGTaGTCTTGTCCAGGACACGGT +
Preference number: 4 (lower is better)
Translates to: LVIHDMGKMLQGFSEPFGGSKCL*SCPGHG
Trigger: ACCGTGTCCTGGACAAGATCACAGACACTTTGATCC...CCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp TCCTTTTCTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAGAATGAGAAGGAGCTaGGCTAGGCGGCGATGCTGC +
Preference number: 4 (lower is better)
Translates to: SFSVCITYSYRGSRFPFNRMRRS*ARRRCC
Trigger: GCAGCATCGCCGCCTAGCTCAGCTCCTTCTCATTCT...ATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAGAAAAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCAAGAATGAGAAGGAGCTaGGCTAGGCGGCGATGCTGC +
Preference number: 4 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSRMRRS*ARRRCC
Trigger: GCAGCATCGCCGCCTAGCTCAGCTCCTTCTCATTCT...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTGGATATGGGAAAGAATaGGAAGGAGCTGAGCTAGGC +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCGYGKE*EGAELG
Trigger: GCCTAGCTCAGCTCCTTCTCATTCTTTCCCATATCC...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCTAGTCCATCTTCTGCCTaGCATAAAGGAATCCCAGTT +
Preference number: 4 (lower is better)
Translates to: QESGWTLNLSIRSAACIASPSSA*HKGIPV
Trigger: AACTGGGATTCCTTTATGTCAGGCAGAAGATGGACT...AGCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR GCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGGCTAGGCGGCGATGCTaGTGCTGCAGAGTCAGGCCA +
Preference number: 4 (lower is better)
Translates to: FHFGLEKEVILSCTRETKARRRC*CCRVRP
Trigger: TGGCCTGACTCTGCAGCAGCAGCATCGCCGCCTAGC...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGCCATTCCCGAGGCTTTaGTGTGAAGGGTCATGGTCA +
Preference number: 4 (lower is better)
Translates to: GSRFPFNKVTCCYRNASGPFPRL*CEGSWS
Trigger: TGACCATGACCCTTCACACCAAAGCCTCGGGAATGG...CCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGCCATTCCCGAGGCTTTaGTGTGAAGGGTCATGGTCA +
Preference number: 4 (lower is better)
Translates to: EIALSTTSIKGATLKSLLPFPRL*CEGSWS
Trigger: TGACCATGACCCTTCACACCAAAGCCTCGGGAATGG...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCCCCTATCTGCTAGGTTaGTCAATAAGCCCATCATTG +
Preference number: 4 (lower is better)
Translates to: SREWLDIESEYQKCRMHRPYLLG*SISPSL
Trigger: CAATGATGGGCTTATTGACCAACCTAGCAGATAGGG...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGAGGACACGGTGGATGTaGTCCTTCTCTTCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: EIALSTTSIKGATLKSLLRTRWM*SFSSRD
Trigger: GTCTCTGGAAGAGAAGGACCACATCCACCGTGTCCT...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 72 bp AGAATTCTGCTAGTCATACATGACATGGGTAAAATGTaGCAGGGATTCTCAGAACCTTTCGGGGAGCCTGGG +
Preference number: 4 (lower is better)
Translates to: RILLVIHDMGKM*QGFSEPFGEPG
Trigger: CCCAGGCTCCCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAGCAGAATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGCGCCCTCGGGGTAGTTaGACACAGTGGGCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: FHFGLEKEVILSCTRETKRPRGS*TQWACC
Trigger: ACAGCAAGCCCACTGTGTTCAACTACCCCGAGGGCG...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp AATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGTCGCCCTCGGGGTAGTTaGACACAGTGGGCTTGCTGT +
Preference number: 4 (lower is better)
Translates to: NYTRYVQCTHSCPARLMCRPRGS*TQWACC
Trigger: ACAGCAAGCCCACTGTGTTCAACTACCCCGAGGGCG...ACACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp ACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAACAGAATCATCCAACAAGGCACTaGCCATCTGGTCAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: TPLRYTSKTYTHPLKEQNHPTRH*PSGQLS
Trigger: TGACAGCTGACCAGATGGTCAGTGCCTTGTTGGATG...ATTCTGTTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp AGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCCATCCAACAAGGCACTaGCCATCTGGTCAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: RGSRFPFNKVTCCYRNASHPTRH*PSGQLS
Trigger: TGACAGCTGACCAGATGGTCAGTGCCTTGTTGGATG...GCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGGCCCAGTTGATCATATaGACCAGCTCCCTATCTGCT +
Preference number: 4 (lower is better)
Translates to: EIALSTTSIKGATLKSLLAQLII*TSSLSA
Trigger: AGCAGATAGGGAGCTGGTTCATATGATCAACTGGGC...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAAGCCCAGTTGATCATATaGACCAGCTCCCTATCTGCT +
Preference number: 4 (lower is better)
Translates to: LTTPLRYTSKTYTHPLKEAQLII*TSSLSA
Trigger: AGCAGATAGGGAGCTGGTTCATATGATCAACTGGGC...TTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTTCCACACATTTACCTTaGTTCCTGTCCAGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: VAKGERELLPRFSPGIPFSTHLP*FLSRSK
Trigger: CTTGCTCCTGGACAGGAATCAAGGTAAATGTGTGGA...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCATGCGGAACCGACTTaGCGTAGCCAGCAACATGTC +
Preference number: 4 (lower is better)
Translates to: PIGAQDFPLIKSHVAIGMHAEPT*RSQQHV
Trigger: GACATGTTGCTGGCTACGTCAAGTCGGTTCCGCATG...CATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp GGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGGGATCAAAGTGTCTGTaGTCTTGTCCAGGACACGGT +
Preference number: 4 (lower is better)
Translates to: GSRFPFNKVTCCYRNASGGSKCL*SCPGHG
Trigger: ACCGTGTCCTGGACAAGATCACAGACACTTTGATCC...CCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CATTTTTCTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTCAAGTCCCCAAAGCCTaGCACTCTCTTTGCCCAGTT +
Preference number: 4 (lower is better)
Translates to: HFSDNSIEIYLQDIHSPTQVPKA*HSLCPV
Trigger: AACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTG...AGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAGAAAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp CAGCTGTCTGATGTTCTTTGCCCATTTCAAACTTATTATCATAGCATGAATACATCCCCGGGTGTTCCATaGAGCGCCAGACGAGACCAA +
Preference number: 4 (lower is better)
Translates to: QLSDVLCPFQTYYHSMNTSPGVP*SARRDQ
Trigger: TTGGTCTCGTCTGGCGCTCCATGGAACACCCGGGGA...TGTATTCATGCTATGATAATAAGTTTGAAATGGGCAAAGAACATCAGACAGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTGAGACTTCAAGGTGCTaGACAGAAACGTGTACACTC +
Preference number: 4 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFETSRC*TETCTL
Trigger: GAGTGTACACGTTTCTGTCCAGCACCTTGAAGTCTC...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTGCTTTGGCCATCAGGTaGATCAAAGTGTCTGTGATC +
Preference number: 4 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFALAIR*IKVSVI
Trigger: GATCACAGACACTTTGATCCACCTGATGGCCAAAGC...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 72 bp TGCAAGCGGGTGCTATTAGGAAGCCATGAGATCGCTTaGTCAACGACTTCAATTAAAGGAGCCACTTTGAAG +
Preference number: 4 (lower is better)
Translates to: CKRVLLGSHEIA*STTSIKGATLK
Trigger: CTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTCATGGCTTCCTAATAGCACCCGCTTGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 72 bp GACTCCTCCGAGTCACAGTCATTGCCCATACATTACTaGTTCCCTGCCCCCAAGAATAAAACTAAACAAACC +
Preference number: 4 (lower is better)
Translates to: DSSESQSLPIHY*FPAPKNKTKQT
Trigger: GGTTTGTTTAGTTTTATTCTTGGGGGCAGGGAACAAGTAATGTATGGGCAATGACTGTGACTCGGAGGAGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAACATCCAACAAGGCACTaGCCATCTGGTCAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQHPTRH*PSGQLS
Trigger: TGACAGCTGACCAGATGGTCAGTGCCTTGTTGGATG...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTGCCCAGTTGATCATATaGACCAGCTCCCTATCTGCT +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGAAQLII*TSSLSA
Trigger: AGCAGATAGGGAGCTGGTTCATATGATCAACTGGGC...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTTCGAGAAGGTGGACCTaGTCATGGAGATTCAAGTCC +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGASRRWT*SWRFKS
Trigger: GGACTTGAATCTCCATGATCAGGTCCACCTTCTCGA...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGGGGGCACAACGTTCTTaGATTTCATGTTGTAGAGAT +
Preference number: 4 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVGAQRS*ISCCRD
Trigger: ATCTCTACAACATGAAATGCAAGAACGTTGTGCCCC...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAATTGTCAATGGTGCATTaGTTTGTAGCTGGACACATG +
Preference number: 4 (lower is better)
Translates to: VFAEASSWSHYEVLIRGELSMVH*FVAGHM
Trigger: CATGTGTCCAGCTACAAACCAATGCACCATTGACAA...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCAAATCACAAGAGGGCTTaGCCAAAGGTTGGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSNHKRA*PKVGSP
Trigger: AGGGCTGCCAACCTTTGGCCAAGCCCTCTTGTGATT...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTCCCTATCTGCTAGGTTaGTCAATAAGCCCATCATTG +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCPYLLG*SISPSL
Trigger: CAATGATGGGCTTATTGACCAACCTAGCAGATAGGG...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAAAGGACACGGTGGATGTaGTCCTTCTCTTCCAGAGAC +
Preference number: 4 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQRTRWM*SFSSRD
Trigger: GTCTCTGGAAGAGAAGGACCACATCCACCGTGTCCT...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAAGGCTCTCTTGGCCTTaGTTAGAGAGTGCAGACTAC +
Preference number: 4 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLRLSWP*LESADY
Trigger: GTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCT...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp CTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTCCTTGGCAGACTCCATaGTCATGTTTCCTTTCTCGT +
Preference number: 4 (lower is better)
Translates to: LPLGAIMKCLSEVKCLLSPWQTP*SCFLSR
Trigger: ACGAGAAAGGAAACATGATCATGGAGTCTGCCAAGG...AGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp ATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCCATCCAACAAGGCACTaGCCATCTGGTCAGCTGTCA +
Preference number: 4 (lower is better)
Translates to: ITYSYRGSRFPFNKVTCCHPTRH*PSGQLS
Trigger: TGACAGCTGACCAGATGGTCAGTGCCTTGTTGGATG...GCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTCAAAGATCTCCACCATaGCTTCCACACATTTACCTT +
Preference number: 4 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCQRSPP*LPHIYL
Trigger: AAGGTAAATGTGTGGAAGGCATGGTGGAGATCTTTG...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTACAAACTCTTCTCCCTaGAGGTTCATCATGCGGAAC +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGATNSSP*RFIMRN
Trigger: GTTCCGCATGATGAACCTGCAGGGAGAAGAGTTTGT...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGAATCACAAGAGGGCTTaGCCAAAGGTTGGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: ELHKIRSMYSFLSSKINVNHKRA*PKVGSP
Trigger: AGGGCTGCCAACCTTTGGCCAAGCCCTCTTGTGATT...CACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp GTTTGCTCCATTTGCAAGAGAGTAAATTTTCATGGAGTTAATCTAGGATGTGTGAATCACAAGAGGGCTTaGCCAAAGGTTGGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: VCSICKRVNFHGVNLGCVNHKRA*PKVGSP
Trigger: AGGGCTGCCAACCTTTGGCCAAGCCCTCTTGTGATT...CACACATCCTAGATTAACTCCATGAAAATTTACTCTCTTGCAAATGGAGCAAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTTGTCCAGGACACGGTaGATGTGGTCCTTCTCTTCC +
Preference number: 4 (lower is better)
Translates to: ITYSYRGSRFPFNKVTCCLSRTR*MWSFSS
Trigger: GGAAGAGAAGGACCACATCCACCGTGTCCTGGACAA...GCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTGCTTTGGCCATCAGGTaGATCAAAGTGTCTGTGATC +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGAALAIR*IKVSVI
Trigger: GATCACAGACACTTTGATCCACCTGATGGCCAAAGC...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCGCTTTGGCCATCAGGTaGATCAAAGTGTCTGTGATC +
Preference number: 4 (lower is better)
Translates to: SRFPFNKVTCCYRNASGCALAIR*IKVSVI
Trigger: GATCACAGACACTTTGATCCACCTGATGGCCAAAGC...GCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGGGGACTAGTATCACATaGCAGGCTCTCTTGGCCTTG +
Preference number: 4 (lower is better)
Translates to: ELHKIRSMYSFLSSKINVGTSIT*QALLAL
Trigger: CAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCC...CACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 72 bp GACTTTCTGTTTCCCACAAGTCATGGGAAGCAAGAATaGTCTAGAACCCACCATGTATATAATACTCGGCAG +
Preference number: 4 (lower is better)
Translates to: DFLFPTSHGKQE*SRTHHVYNTRQ
Trigger: CTGCCGAGTATTATATACATGGTGGGTTCTAGACAATTCTTGCTTCCCATGACTTGTGGGAAACAGAAAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
3UTR CAA 72 bp AATAGAGAGATGTATCTTCAAGAGAGTGGTTGGACATaGAATCTGAGTATCAGAAGTGCCGCATGCATCGCT +
Preference number: 4 (lower is better)
Translates to: NREMYLQESGWT*NLSIRSAACIA
Trigger: AGCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGAAGATACATCTCTCTATT
43% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 72 bp GCCGCTACTCTCTTCCTTGGAACTCAAATTGCCATTTaGGAAATGGCTGCCAGTAGAGCTAGTATTACTTTA +
Preference number: 4 (lower is better)
Translates to: AATLFLGTQIAI*EMAASRASITL
Trigger: TAAAGTAATACTAGCTCTACTGGCAGCCATTTCCAAAATGGCAATTTGAGTTCCAAGGAAGAGAGTAGCGGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CAA 72 bp TCAACCTCCAAAGACCTGTACCAAAGAGAGTCATGGTaGCCTTATGTGCTACTGTATGACTCTATTTGCCTT +
Preference number: 4 (lower is better)
Translates to: STSKDLYQRESW*PYVLLYDSICL
Trigger: AAGGCAAATAGAGTCATACAGTAGCACATAAGGCAACCATGACTCTCTTTGGTACAGGTCTTTGGAGGTTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp GAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGCTCTCTTTGCCCAGTTaGTCATATGAACCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: ELHKIRSMYSFLSSKINVLSLPS*SYEPAP
Trigger: GGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAG...CACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp ATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCCTCTCTTTGCCCAGTTaGTCATATGAACCAGCTCCC +
Preference number: 4 (lower is better)
Translates to: ITYSYRGSRFPFNKVTCCLSLPS*SYEPAP
Trigger: GGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAG...GCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp GAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGTCGAGAAGGTGGACCTaGTCATGGAGATTCAAGTCC +
Preference number: 4 (lower is better)
Translates to: ELHKIRSMYSFLSSKINVSRRWT*SWRFKS
Trigger: GGACTTGAATCTCCATGATCAGGTCCACCTTCTCGA...CACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTC
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR TCA 90 bp TCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTTCGAGAAGGTGGACCTaGTCATGGAGATTCAAGTCC +
Preference number: 4 (lower is better)
Translates to: SHIPIGAQDFPLIKSHVASRRWT*SWRFKS
Trigger: GGACTTGAATCTCCATGATCAGGTCCACCTTCTCGA...AGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAATCCACACATTTACCTTaGTTCCTGTCCAGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQSTHLP*FLSRSK
Trigger: CTTGCTCCTGGACAGGAATCAAGGTAAATGTGTGGA...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGCAAAGATCTCCACCATaGCTTCCACACATTTACCTT +
Preference number: 4 (lower is better)
Translates to: EIALSTTSIKGATLKSLLQRSPP*LPHIYL
Trigger: AAGGTAAATGTGTGGAAGGCATGGTGGAGATCTTTG...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp AGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCTGTAGAGATGCTCCATaGCTTTGTTACTCATGTGCC +
Preference number: 4 (lower is better)
Translates to: RGSRFPFNKVTCCYRNASCRDAP*LCYSCA
Trigger: GGCACATGAGTAACAAAGGCATGGAGCATCTCTACA...GCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCAGAGACTTCAAGGTGCTaGACAGAAACGTGTACACTC +
Preference number: 4 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSETSRC*TETCTL
Trigger: GAGTGTACACGTTTCTGTCCAGCACCTTGAAGTCTC...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAAGAGACTTCAAGGTGCTaGACAGAAACGTGTACACTC +
Preference number: 4 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQETSRC*TETCTL
Trigger: GAGTGTACACGTTTCTGTCCAGCACCTTGAAGTCTC...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAATGCAGTTATCTCAATTCATTCATGAAGACTGAAGACTATAGGAATCCTCATGAGTCAGGCCAGCTTTaGCCATCAGGTGGATCAAAG +
Preference number: 4 (lower is better)
Translates to: QCSYLNSFMKTEDYRNPHESGQL*PSGGSK
Trigger: CTTTGATCCACCTGATGGCCAAAGCTGGCCTGACTC...ATGAGGATTCCTATAGTCTTCAGTCTTCATGAATGAATTGAGATAACTGCATTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCTCATGTGCCGGATATaGGAAAGAATGAGAAGGAGC +
Preference number: 4 (lower is better)
Translates to: PIGAQDFPLIKSHVAIGMLMCRI*ERMRRS
Trigger: GCTCCTTCTCATTCTTTCCCATATCCGGCACATGAG...CATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CATGAATACAAACACAGTAGATGGGATAATGTAAAACCCTCCACTAGAGTATTGTCCACACATTTACCTTaGTTCCTGTCCAGGAGCAAG +
Preference number: 4 (lower is better)
Translates to: HEYKHSRWDNVKPSTRVLSTHLP*FLSRSK
Trigger: CTTGCTCCTGGACAGGAATCAAGGTAAATGTGTGGA...CAATACTCTAGTGGAGGGTTTTACATTATCCCATCTACTGTGTTTGTATTCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCATGTAGAGATGCTCCATaGCTTTGTTACTCATGTGCC +
Preference number: 4 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSCRDAP*LCYSCA
Trigger: GGCACATGAGTAACAAAGGCATGGAGCATCTCTACA...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp TGTTTACTCTCTAGGCTTGGGTCTCAACAAGTAGCTTCAATGCAGTTATCTCAAGGGGCACAACGTTCTTaGATTTCATGTTGTAGAGAT +
Preference number: 4 (lower is better)
Translates to: CLLSRLGSQQVASMQLSQGAQRS*ISCCRD
Trigger: ATCTCTACAACATGAAATGCAAGAACGTTGTGCCCC...TTGAGATAACTGCATTGAAGCTACTTGTTGAGACCCAAGCCTAGAGAGTAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR GCA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTGGGGCACAACGTTCTTaGATTTCATGTTGTAGAGAT +
Preference number: 4 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGAGAQRS*ISCCRD
Trigger: ATCTCTACAACATGAAATGCAAGAACGTTGTGCCCC...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTATTGTCAATGGTGCATTaGTTTGTAGCTGGACACATG +
Preference number: 4 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLLSMVH*FVAGHM
Trigger: CATGTGTCCAGCTACAAACCAATGCACCATTGACAA...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATTCAGAATAGATCATaGGCGGTTCAGCATCCAACA +
Preference number: 4 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLIQNRS*AVQHPT
Trigger: TGTTGGATGCTGAACCGCCCATGATCTATTCTGAAT...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CCA 90 bp ATTCTGCTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTATTCAGAATAGATCATaGGCGGTTCAGCATCCAACA +
Preference number: 4 (lower is better)
Translates to: ILLVIHDMGKMLQGFSEPIQNRS*AVQHPT
Trigger: TGTTGGATGCTGAACCGCCCATGATCTATTCTGAAT...AGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAGCAGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR TCA 90 bp CTGACAACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAATTCTTTTCAAAGTCTTaGCAGAATGTTCTCTGTCCA +
Preference number: 4 (lower is better)
Translates to: LTTPLRYTSKTYTHPLKEFFSKS*QNVLCP
Trigger: TGGACAGAGAACATTCTGTCAAGACTTTGAAAAGAA...TTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGTTGTCAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR GCA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACAAAGATCTCCACCATaGCTTCCACACATTTACCTT +
Preference number: 4 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSQRSPP*LPHIYL
Trigger: AAGGTAAATGTGTGGAAGGCATGGTGGAGATCTTTG...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAAATTCAGAATAGATCATaGGCGGTTCAGCATCCAACA +
Preference number: 4 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQIQNRS*AVQHPT
Trigger: TGTTGGATGCTGAACCGCCCATGATCTATTCTGAAT...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp ATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCCCCTATCTGCTAGGTTaGTCAATAAGCCCATCATTG +
Preference number: 4 (lower is better)
Translates to: ITYSYRGSRFPFNKVTCCPYLLG*SISPSL
Trigger: CAATGATGGGCTTATTGACCAACCTAGCAGATAGGG...GCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGCAGACTACAGGTTaGTTTTTCTTGTACCCTGGT +
Preference number: 4 (lower is better)
Translates to: PELHKIRSMYSFLSSKINVQTTG*FFLYPG
Trigger: ACCAGGGTACAAGAAAAACCAACCTGTAGTCTGCAC...ATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR GCA 90 bp CAGCTGTCTGATGTTCTTTGCCCATTTCAAACTTATTATCATAGCATGAATACATGTAGAGATGCTCCATaGCTTTGTTACTCATGTGCC +
Preference number: 4 (lower is better)
Translates to: QLSDVLCPFQTYYHSMNTCRDAP*LCYSCA
Trigger: GGCACATGAGTAACAAAGGCATGGAGCATCTCTACA...TGTATTCATGCTATGATAATAAGTTTGAAATGGGCAAAGAACATCAGACAGCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGCCCTATCTGCTAGGTTaGTCAATAAGCCCATCATTG +
Preference number: 4 (lower is better)
Translates to: FHFGLEKEVILSCTRETKPYLLG*SISPSL
Trigger: CAATGATGGGCTTATTGACCAACCTAGCAGATAGGG...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CCA 90 bp CAATGCAGTTATCTCAATTCATTCATGAAGACTGAAGACTATAGGAATCCTCATTTGTCAATGGTGCATTaGTTTGTAGCTGGACACATG +
Preference number: 4 (lower is better)
Translates to: QCSYLNSFMKTEDYRNPHLSMVH*FVAGHM
Trigger: CATGTGTCCAGCTACAAACCAATGCACCATTGACAA...ATGAGGATTCCTATAGTCTTCAGTCTTCATGAATGAATTGAGATAACTGCATTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
3UTR CAA 72 bp ATCCACTTTCCATTTGTGGTTCTTGAACAGCATCTTTaGTTTGAGAGGATCACTCTTCATTTGGTAGCATAT +
Preference number: 4 (lower is better)
Translates to: IHFPFVVLEQHL*FERITLHLVAY
Trigger: ATATGCTACCAAATGAAGAGTGATCCTCTCAAACAAAAGATGCTGTTCAAGAACCACAAATGGAAAGTGGAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 72 bp AATACTTATTGCACATCCACTTTCCATTTGTGGTTCTaGAACAGCATCTTTTGTTTGAGAGGATCACTCTTC +
Preference number: 4 (lower is better)
Translates to: NTYCTSTFHLWF*NSIFCLRGSLF
Trigger: GAAGAGTGATCCTCTCAAACAAAAGATGCTGTTCAAGAACCACAAATGGAAAGTGGATGTGCAATAAGTATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 72 bp CTAGACATTGTCACCTACATTGATAGCATCTTTTCTTaGGATGACCAGAATCAAATTGGCAAGGTAAGCAAT +
Preference number: 4 (lower is better)
Translates to: LDIVTYIDSIFS*DDQNQIGKVSN
Trigger: ATTGCTTACCTTGCCAATTTGATTCTGGTCATCCAAAGAAAAGATGCTATCAATGTAGGTGACAATGTCTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
3UTR CAA 72 bp TTCATACAAAATACTTATTGCACATCCACTTTCCATTaGTGGTTCTTGAACAGCATCTTTTGTTTGAGAGGA +
Preference number: 4 (lower is better)
Translates to: FIQNTYCTSTFH*WFLNSIFCLRG
Trigger: TCCTCTCAAACAAAAGATGCTGTTCAAGAACCACAAATGGAAAGTGGATGTGCAATAAGTATTTTGTATGAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
3UTR CAA 72 bp AAATTTCTCTTAAGTCTCCGAAGCACAGTGCAAAAATaGAGACATAATCACTTAGAAAGCAAGTCTAAAGGA +
Preference number: 4 (lower is better)
Translates to: KFLLSLRSTVQK*RHNHLESKSKG
Trigger: TCCTTTAGACTTGCTTTCTAAGTGATTATGTCTCAATTTTTGCACTGTGCTTCGGAGACTTAAGAGAAATTT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS GCA 90 bp TGCTGGCCGTGCGGGTGCAGGAAAGGAGACAGCTGCGGCGGCGGGTaGAGCAGCATCAGCGGGCTAGGCGACACGCTGTTGAGCTGGGGG +
Preference number: 5 (lower is better)
Translates to: CWPCGCRKGDSCGGG*SSISGLGDTLLSWG
Trigger: CCCCCAGCTCAACAGCGTGTCGCCTAGCCCGCTGATGCTGCTGCACCCGCCGCCGCAGCTGTCTCCTTTCCTGCACCCGCACGGCCAGCA
70% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp ACCTGTAGAAGGCGGGAGGGCCGGTGTCGCGCACGGCGTAGGCGCTaGGCTCGTTCTCCAGGTAGTAGGGCACCTGCTGGCCGTGCGGGT +
Preference number: 5 (lower is better)
Translates to: TCRRREGRCRARRRR*ARSPGSRAPAGRAG
Trigger: ACCCGCACGGCCAGCAGGTGCCCTACTACCTGGAGAACGAGCCCAGCGCCTACGCCGTGCGCGACACCGGCCCTCCCGCCTTCTACAGGT
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp CTGGGTCTGGCTGGGCTCCTCTGGGGGCACTCCCATGCGACTGGCTaGGGCATGAAGGCGGTGGGCATCCAACATCTCCAGGAGCAGGTC +
Preference number: 5 (lower is better)
Translates to: LGLAGLLWGHSHATG*GMKAVGIQHLQEQV
Trigger: GACCTGCTCCTGGAGATGTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS GCA 90 bp TCCACGTATACCTCGCCCAGGGCCCTCTCCATGGGCATCTTGAGCTaGGGGCGGTTGAGGGGCTCCAGCTCGTTCCCTTGGATCTGGTGC +
Preference number: 5 (lower is better)
Translates to: STYTSPRALSMGILS*GRLRGSSSFPWIWC
Trigger: GCACCAGATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCTGGGCGAGGTATACGTGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp AGGAATGTGCTGAAGTGGAGCTGGTGGTGGCCAGCTGGGTCTGGCTaGGCTCCTCTGGGGGCACTCCCATGCGACTGGCTGGGGCATGAA +
Preference number: 5 (lower is better)
Translates to: RNVLKWSWWWPAGSG*APLGALPCDWLGHE
Trigger: TTCATGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp TGTAAGGAATGTGCTGAAGTGGAGCTGGTGGTGGCCAGCTGGGTCTaGCTGGGCTCCTCTGGGGGCACTCCCATGCGACTGGCTGGGGCA +
Preference number: 5 (lower is better)
Translates to: CKECAEVELVVASWV*LGSSGGTPMRLAGA
Trigger: TGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp CCGGGGGTATGTAGTAGGTTTGTAAGGAATGTGCTGAAGTGGAGCTaGTGGTGGCCAGCTGGGTCTGGCTGGGCTCCTCTGGGGGCACTC +
Preference number: 5 (lower is better)
Translates to: PGVCSRFVRNVLKWS*WWPAGSGWAPLGAL
Trigger: GAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTACAAACCTACTACATACCCCCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp GGGGTATGTAGTAGGTTTGTAAGGAATGTGCTGAAGTGGAGCTGGTaGTGGCCAGCTGGGTCTGGCTGGGCTCCTCTGGGGGCACTCCCA +
Preference number: 5 (lower is better)
Translates to: GVCSRFVRNVLKWSW*WPAGSGWAPLGALP
Trigger: TGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTACAAACCTACTACATACCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp GTATGTAGTAGGTTTGTAAGGAATGTGCTGAAGTGGAGCTGGTGGTaGCCAGCTGGGTCTGGCTGGGCTCCTCTGGGGGCACTCCCATGC +
Preference number: 5 (lower is better)
Translates to: VCSRFVRNVLKWSWW*PAGSGWAPLGALPC
Trigger: GCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTACAAACCTACTACATAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGATTGAGCTGCGGGCGGTaGAGGGGCTCCAGCTCGTTC +
Preference number: 5 (lower is better)
Translates to: PLILESHWWWMHATVYAGLSCGR*RGSSSF
Trigger: GAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAA...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp GCAGAGTCAGGCCAGCTTTGGCCATCAGGTGGATCAAAGTGTCTGTaGTCTTGTCCAGGACACGGTGGATGTGGTCCTTCTCTTCCAGAG +
Preference number: 5 (lower is better)
Translates to: AESGQLWPSGGSKCL*SCPGHGGCGPSLPE
Trigger: CTCTGGAAGAGAAGGACCACATCCACCGTGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAAGCTGGCCTGACTCTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp CCAATCATCAGAATCTCCAGCCAGGCACACTCGAGAAGGTGGACCTaGTCATGGAGATTCAAGTCCCCAAAGCCTGGCACTCTCTTTGCC +
Preference number: 5 (lower is better)
Translates to: PIIRISSQAHSRRWT*SWRFKSPKPGTLFA
Trigger: GGCAAAGAGAGTGCCAGGCTTTGGGGACTTGAATCTCCATGATCAGGTCCACCTTCTCGAGTGTGCCTGGCTGGAGATTCTGATGATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCCTCCAGCTCGTTCCCTaGGATCTGGTGCAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: SREWLDIESEYQKCRMHRLQLVP*DLVQQG
Trigger: GCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAG...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp CCACTCATACTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAAGAGTCAGGCCAGCTTaGGCCATCAGGTGGATCAAA +
Preference number: 5 (lower is better)
Translates to: PLILESHWWWMHATVYAGRVRPA*AIRWIK
Trigger: TTTGATCCACCTGATGGCCAAAGCTGGCCTGACTCT...TCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAGTATGAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp AGTCATTGCACACGGCACAGTAGCGAGTCTCCTTGGCAGACTCCATaGTCATGTTTCCTTTCTCGTTACTGCTGGACAGTCTCTCTCGGC +
Preference number: 5 (lower is better)
Translates to: SHCTRHSSESPWQTP*SCFLSRYCWTVSLG
Trigger: GCCGAGAGAGACTGTCCAGCAGTAACGAGAAAGGAAACATGATCATGGAGTCTGCCAAGGAGACTCGCTACTGTGCCGTGTGCAATGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp TCTCCTGAAGCACCCATTTCATTTCGGCCTTCCAAGTCATCTCTCTaGCGCTTGTGCTTCAACATTCTCCCTCCTCGGCGGTCTTTCCGT +
Preference number: 5 (lower is better)
Translates to: SPEAPISFRPSKSSL*RLCFNILPPRRSFR
Trigger: ACGGAAAGACCGCCGAGGAGGGAGAATGTTGAAGCACAAGCGTCAGAGAGATGACTTGGAAGGCCGAAATGAAATGGGTGCTTCAGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp AATCACAAGAGGGCTTGGCCAAAGGTTGGCAGCCCTCATGTCTCCTaGAGCACCCATTTCATTTCGGCCTTCCAAGTCATCTCTCTGACG +
Preference number: 5 (lower is better)
Translates to: NHKRAWPKVGSPHVS*STHFISAFQVISLT
Trigger: CGTCAGAGAGATGACTTGGAAGGCCGAAATGAAATGGGTGCTTCAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCCTCTTGTGATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTTTCGGGGGGCTTGGCCAAAGGTaGGCAGCCCTCATGTCTCCT +
Preference number: 5 (lower is better)
Translates to: LVIHDMGKMLQGFSEPFGGLGQR*AALMSP
Trigger: AGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCC...CCCGAAAGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAG
51% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CTAGAAAGCCACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTAAAGTGTCTGTGATCTaGTCCAGGACACGGTGGATG +
Preference number: 5 (lower is better)
Translates to: LESHWWWMHATVYAGDRIKVSVI*SRTRWM
Trigger: CATCCACCGTGTCCTGGACAAGATCACAGACACTTT...AATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTGGCTTTCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CACTGGTGGTGGATGCATGCCACAGTGTACGCAGGAGACAGAATTCTGCTAGTCAGATGCTCCATGCCTTaGTTACTCATGTGCCGGATA +
Preference number: 5 (lower is better)
Translates to: HWWWMHATVYAGDRILLVRCSMP*LLMCRI
Trigger: TATCCGGCACATGAGTAACAAAGGCATGGAGCATCT...GACTAGCAGAATTCTGTCTCCTGCGTACACTGTGGCATGCATCCACCACCAGTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp TTGACACCTACATTTCTGGACTCTGGGGATGGGACTAGTATCACATaGCAGGCTCTCTTGGCCTTGGTTAGAGAGTGCAGACTACAGGTT +
Preference number: 5 (lower is better)
Translates to: LTPTFLDSGDGTSIT*QALLALVRECRLQV
Trigger: AACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATCCCCAGAGTCCAGAAATGTAGGTGTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp CCCATGCCTTTCCCCAAGTTCCTGGAGCATCTACAGGAACACAGGTATCTGATGCTCTTCCTCCGGTTCTaGTCAATGGTGCATTGGTTT +
Preference number: 5 (lower is better)
Translates to: PMPFPKFLEHLQEHRYLMLFLRF*SMVHWF
Trigger: AAACCAATGCACCATTGACAAGAACCGGAGGAAGAG...CATCAGATACCTGTGTTCCTGTAGATGCTCCAGGAACTTGGGGAAAGGCATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGGGGCTTGGCCAAAGGTaGGCAGCCCTCATGTCTCCT +
Preference number: 5 (lower is better)
Translates to: GSRFPFNKVTCCYRNASGGLGQR*AALMSP
Trigger: AGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCC...CCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCC
50% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp CATATTCAGAATAGATCATGGGCGGTTCAGCATCCAACAAGGCACTaGCCATCTGGTCAGCTGTCAAGGACAAGGCAGGGCTATTCTTCT +
Preference number: 5 (lower is better)
Translates to: HIQNRSWAVQHPTRH*PSGQLSRTRQGYSS
Trigger: AGAAGAATAGCCCTGCCTTGTCCTTGACAGCTGACCAGATGGTCAGTGCCTTGTTGGATGCTGAACCGCCCATGATCTATTCTGAATATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp CATGGAGATTCAAGTCCCCAAAGCCTGGCACTCTCTTTGCCCAGTTaGTCATATGAACCAGCTCCCTATCTGCTAGGTTGGTCAATAAGC +
Preference number: 5 (lower is better)
Translates to: HGDSSPQSLALSLPS*SYEPAPYLLGWSIS
Trigger: GCTTATTGACCAACCTAGCAGATAGGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTGAATCTCCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 90 bp TTCTGGACTCTGGGGATGGGACTAGTATCACATGGCAGGCTCTCTTaGCCTTGGTTAGAGAGTGCAGACTACAGGTTGGTTTTTCTTGTA +
Preference number: 5 (lower is better)
Translates to: FWTLGMGLVSHGRLS*PWLESADYRLVFLV
Trigger: TACAAGAAAAACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATCCCCAGAGTCCAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp TCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCCTCCAGCTCGTTCCCTaGGATCTGGTGCAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: SRFPFNKVTCCYRNASGCLQLVP*DLVQQG
Trigger: GCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAG...GCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp ATTCTGCTAGTCATACATGACATGGGTAAAATGTTGCAGGGATTCTCAGAACCTCTCCAGCTCGTTCCCTaGGATCTGGTGCAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: ILLVIHDMGKMLQGFSEPLQLVP*DLVQQG
Trigger: GCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAG...AGGTTCTGAGAATCCCTGCAACATTTTACCCATGTCATGTATGACTAGCAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAGGGCTTGGCCAAAGGTaGGCAGCCCTCATGTCTCCT +
Preference number: 5 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLGLGQR*AALMSP
Trigger: AGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCC...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp AGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGCTTGGCCAAAGGTaGGCAGCCCTCATGTCTCCT +
Preference number: 5 (lower is better)
Translates to: RGSRFPFNKVTCCYRNASGLGQR*AALMSP
Trigger: AGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCC...GCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAGAGTCAGGCCAGCTTaGGCCATCAGGTGGATCAAA +
Preference number: 5 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVRVRPA*AIRWIK
Trigger: TTTGATCCACCTGATGGCCAAAGCTGGCCTGACTCT...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 90 bp TTCAAGTCCCCAAAGCCTGGCACTCTCTTTGCCCAGTTGATCATATaGACCAGCTCCCTATCTGCTAGGTTGGTCAATAAGCCCATCATT +
Preference number: 5 (lower is better)
Translates to: FKSPKPGTLFAQLII*TSSLSARLVNKPII
Trigger: AATGATGGGCTTATTGACCAACCTAGCAGATAGGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCCTCTTCCTCCGGTTCTaGTCAATGGTGCATTGGTTT +
Preference number: 5 (lower is better)
Translates to: SREWLDIESEYQKCRMHRLFLRF*SMVHWF
Trigger: AAACCAATGCACCATTGACAAGAACCGGAGGAAGAG...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAAGTGTCTGTGATCTaGTCCAGGACACGGTGGATG +
Preference number: 5 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVKVSVI*SRTRWM
Trigger: CATCCACCGTGTCCTGGACAAGATCACAGACACTTT...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTTTAGAGTCAGGCCAGCTTaGGCCATCAGGTGGATCAAA +
Preference number: 5 (lower is better)
Translates to: AEASSWSHYEVLIRGEMFRVRPA*AIRWIK
Trigger: TTTGATCCACCTGATGGCCAAAGCTGGCCTGACTCT...AAACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp TCAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCAGTGCAGACTACAGGTaGGTTTTTCTTGTACCCTGG +
Preference number: 5 (lower is better)
Translates to: SREWLDIESEYQKCRMHRSADYR*VFLVPW
Trigger: CCAGGGTACAAGAAAAACCAACCTGTAGTCTGCACT...GCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS GCA 90 bp GAATTAAGCAAAATGATGGATTTGAGGCACACAAACTCTTCTCCCTaGAGGTTCATCATGCGGAACCGACTTGACGTAGCCAGCAACATG +
Preference number: 5 (lower is better)
Translates to: ELSKMMDLRHTNSSP*RFIMRNRLDVASNM
Trigger: CATGTTGCTGGCTACGTCAAGTCGGTTCCGCATGATGAACCTGCAGGGAGAAGAGTTTGTGTGCCTCAAATCCATCATTTTGCTTAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CAAGAGAGTGGTTGGACATTGAATCTGAGTATCAGAAGTGCCGCATGCATCGCTAGCAGAGTGGAATCTTaGACACCTACATTTCTGGAC +
Preference number: 5 (lower is better)
Translates to: QESGWTLNLSIRSAACIASRVES*TPTFLD
Trigger: GTCCAGAAATGTAGGTGTCAAAGATTCCACTCTGCT...AGCGATGCATGCGGCACTTCTGATACTCAGATTCAATGTCCAACCACTCTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp TTTCATTTTGGTTTGGAAAAGGAAGTAATCCTTAGTTGTACTAGAGAGACCAAGCTCCAGCTCGTTCCCTaGGATCTGGTGCAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: FHFGLEKEVILSCTRETKLQLVP*DLVQQG
Trigger: GCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAG...CTTGGTCTCTCTAGTACAACTAAGGATTACTTCCTTTTCCAAACCAAAATGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000067086.14
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp AAGTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGTCCCTATCTGCTAGGTaGGTCAATAAGCCCATCATT +
Preference number: 5 (lower is better)
Translates to: KSLLRLPLGAIMKCLSEVSLSAR*VNKPII
Trigger: AATGATGGGCTTATTGACCAACCTAGCAGATAGGGA...CACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GTCTTTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAATCCCTATCTGCTAGGTaGGTCAATAAGCCCATCATT +
Preference number: 5 (lower is better)
Translates to: VFAEASSWSHYEVLIRGESLSAR*VNKPII
Trigger: AATGATGGGCTTATTGACCAACCTAGCAGATAGGGA...TTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAAAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGAAAGTGTCTGTGATCTaGTCCAGGACACGGTGGATG +
Preference number: 5 (lower is better)
Translates to: GSRFPFNKVTCCYRNASGKVSVI*SRTRWM
Trigger: CATCCACCGTGTCCTGGACAAGATCACAGACACTTT...CCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GTAGCAAAGGGAGAAAGAGAGCTGTTACCAAGATTTAGCCCTGGAATCCCTTTTCTTGTCAATGGTGCATaGGTTTGTAGCTGGACACAT +
Preference number: 5 (lower is better)
Translates to: VAKGERELLPRFSPGIPFLVNGA*VCSWTH
Trigger: ATGTGTCCAGCTACAAACCAATGCACCATTGACAAG...AAAAGGGATTCCAGGGCTAAATCTTGGTAACAGCTCTCTTTCTCCCTTTGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp TTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGAGGCTTCCTCTCTTCCTCCGGTTCTaGTCAATGGTGCATTGGTTT +
Preference number: 5 (lower is better)
Translates to: LSTTSIKGATLKSLLRLPLFLRF*SMVHWF
Trigger: AAACCAATGCACCATTGACAAGAACCGGAGGAAGAG...AGGAAGCCTCAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATACATGGCAGGCTCTCTaGGCCTTGGTTAGAGAGTGC +
Preference number: 5 (lower is better)
Translates to: PELHKIRSMYSFLSSKINTWQAL*ALVREC
Trigger: GCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGT...ATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS CCA 90 bp GCAACTCTTCCTCCGGTTCTTGTCAATGGTGCATTGGTTTGTAGCTaGACACATGTAGTCATTGTGTCCTTGAATGCTTCTCTTAAAGAA +
Preference number: 5 (lower is better)
Translates to: ATLPPVLVNGALVCS*THVVIVSLNASLKE
Trigger: TTCTTTAAGAGAAGCATTCAAGGACACAATGACTACATGTGTCCAGCTACAAACCAATGCACCATTGACAAGAACCGGAGGAAGAGTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCAAGCGGGTGCTCTCTTCCTCCGGTTCTaGTCAATGGTGCATTGGTTT +
Preference number: 5 (lower is better)
Translates to: QDFPLIKSHVAIGMQAGALFLRF*SMVHWF
Trigger: AAACCAATGCACCATTGACAAGAACCGGAGGAAGAG...AGCACCCGCTTGCATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTACTTGTCAATGGTGCATaGGTTTGTAGCTGGACACAT +
Preference number: 5 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLLVNGA*VCSWTH
Trigger: ATGTGTCCAGCTACAAACCAATGCACCATTGACAAG...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp TTGCTGAGGCTTCCTCTTGGAGCCATTATGAAGTGCTTATCAGAGGTGAAATGTAGCAAAATGATGGATTaGAGGCACACAAACTCTTCT +
Preference number: 5 (lower is better)
Translates to: LLRLPLGAIMKCLSEVKCSKMMD*RHTNSS
Trigger: AGAAGAGTTTGTGTGCCTCAAATCCATCATTTTGCT...ACATTTCACCTCTGATAAGCACTTCATAATGGCTCCAAGAGGAAGCCTCAGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGAGATGCTCCATGCCTTaGTTACTCATGTGCCGGATA +
Preference number: 5 (lower is better)
Translates to: PIGAQDFPLIKSHVAIGMRCSMP*LLMCRI
Trigger: TATCCGGCACATGAGTAACAAAGGCATGGAGCATCT...CATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp AATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGTCAGGCTCTCTTGGCCTaGGTTAGAGAGTGCAGACTA +
Preference number: 5 (lower is better)
Translates to: NYTRYVQCTHSCPARLMCQALLA*VRECRL
Trigger: TAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTG...ACACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATT
42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp CTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACTTGTCAATGGTGCATaGGTTTGTAGCTGGACACAT +
Preference number: 5 (lower is better)
Translates to: LCASHIPIGAQDFPLIKSLVNGA*VCSWTH
Trigger: ATGTGTCCAGCTACAAACCAATGCACCATTGACAAG...TGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp CCTATAGGGGCTCAAGATTTCCCTTTAATAAAGTCACATGTTGCTATAGGAATGCTTGTCAATGGTGCATaGGTTTGTAGCTGGACACAT +
Preference number: 5 (lower is better)
Translates to: PIGAQDFPLIKSHVAIGMLVNGA*VCSWTH
Trigger: ATGTGTCCAGCTACAAACCAATGCACCATTGACAAG...CATTCCTATAGCAACATGTGACTTTATTAAAGGGAAATCTTGAGCCCCTATAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp ATTATGAAGTGCTTATCAGAGGTGAAATGTTTACTCTCTAGGCTTGGGTCTCAATCCCTATCTGCTAGGTaGGTCAATAAGCCCATCATT +
Preference number: 5 (lower is better)
Translates to: IMKCLSEVKCLLSRLGSQSLSAR*VNKPII
Trigger: AATGATGGGCTTATTGACCAACCTAGCAGATAGGGA...TTGAGACCCAAGCCTAGAGAGTAAACATTTCACCTCTGATAAGCACTTCATAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp TTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGAGGCTTCCTAGCAAAATGATGGATTaGAGGCACACAAACTCTTCT +
Preference number: 5 (lower is better)
Translates to: LSTTSIKGATLKSLLRLPSKMMD*RHTNSS
Trigger: AGAAGAGTTTGTGTGCCTCAAATCCATCATTTTGCT...AGGAAGCCTCAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp GCCCTGAATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAAGTCCTTGTAGGTCCTaGTCAGAGCTTCTTTTCAAA +
Preference number: 5 (lower is better)
Translates to: ALNYTRYVQCTHSCPARLSPCRS*SELLFK
Trigger: TTTGAAAAGAAGCTCTGACAAGGACCTACAAGGACT...TAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATTCAGGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp GAGATCGCTTTGTCAACGACTTCAATTAAAGGAGCCACTTTGAAGTCTTTGCTGGTAGTCATTGTGTCCTaGAATGCTTCTCTTAAAGAA +
Preference number: 5 (lower is better)
Translates to: EIALSTTSIKGATLKSLLVVIVS*NASLKE
Trigger: TTCTTTAAGAGAAGCATTCAAGGACACAATGACTAC...CAGCAAAGACTTCAAAGTGGCTCCTTTAATTGAAGTCGTTGACAAAGCGATCTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp ACTCCATTGAGATATACCTCCAAGACATACACTCACCCACTTAAGGAACAGAATGTAGTCATTGTGTCCTaGAATGCTTCTCTTAAAGAA +
Preference number: 5 (lower is better)
Translates to: TPLRYTSKTYTHPLKEQNVVIVS*NASLKE
Trigger: TTCTTTAAGAGAAGCATTCAAGGACACAATGACTAC...ATTCTGTTCCTTAAGTGGGTGAGTGTATGTCTTGGAGGTATATCTCAATGGAGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp AATTACACAAGATACGTTCAATGTACTCATTCCTGTCCAGCAAGATTAATGTGTTCCCTATCTGCTAGGTaGGTCAATAAGCCCATCATT +
Preference number: 5 (lower is better)
Translates to: NYTRYVQCTHSCPARLMCSLSAR*VNKPII
Trigger: AATGATGGGCTTATTGACCAACCTAGCAGATAGGGA...ACACATTAATCTTGCTGGACAGGAATGAGTACATTGAACGTATCTTGTGTAATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp TCCTTTTCTGTGTGCATCACATATTCCTATAGGGGCTCAAGATTTCCCTTTAATAGCAAAATGATGGATTaGAGGCACACAAACTCTTCT +
Preference number: 5 (lower is better)
Translates to: SFSVCITYSYRGSRFPFNSKMMD*RHTNSS
Trigger: AGAAGAGTTTGTGTGCCTCAAATCCATCATTTTGCT...ATTAAAGGGAAATCTTGAGCCCCTATAGGAATATGTGATGCACACAGAAAAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS-3UTR CAA 90 bp ATCCACTTTCCATTTGTGGTTCTTGAACAGCATCTTTTGTTTGAGAGGATCACTACAGGTTGGTTTTTCTaGTACCCTGGTTGCATTTTT +
Preference number: 5 (lower is better)
Translates to: IHFPFVVLEQHLLFERITTGWFF*YPGCIF
Trigger: AAAAATGCAACCAGGGTACAAGAAAAACCAACCTGT...AGTGATCCTCTCAAACAAAAGATGCTGTTCAAGAACCACAAATGGAAAGTGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS-3UTR CAA 90 bp CAGCTGTCTGATGTTCTTTGCCCATTTCAAACTTATTATCATAGCATGAATACAGTAGTCATTGTGTCCTaGAATGCTTCTCTTAAAGAA +
Preference number: 5 (lower is better)
Translates to: QLSDVLCPFQTYYHSMNTVVIVS*NASLKE
Trigger: TTCTTTAAGAGAAGCATTCAAGGACACAATGACTAC...TGTATTCATGCTATGATAATAAGTTTGAAATGGGCAAAGAACATCAGACAGCTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105590.8
CDS CCA 72 bp AGGCGGGAGGGCCGGTGTCGCGCACGGCGTAGGCGCTaGGCTCGTTCTCCAGGTAGTAGGGCACCTGCTGGC +
Preference number: 6 (lower is better)
Translates to: RREGRCRARRRR*ARSPGSRAPAG
Trigger: GCCAGCAGGTGCCCTACTACCTGGAGAACGAGCCCAGCGCCTACGCCGTGCGCGACACCGGCCCTCCCGCCT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS GCA 72 bp GCTGGGTCTGGCTGGGCTCCTCTGGGGGCACTCCCATaGGACTGGCTGGGGCATGAAGGCGGTGGGCATCCA +
Preference number: 6 (lower is better)
Translates to: AGSGWAPLGALP*DWLGHEGGGHP
Trigger: TGGATGCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp GCTGGTGGTGGCCAGCTGGGTCTGGCTGGGCTCCTCTaGGGGCACTCCCATGCGACTGGCTGGGGCATGAAG +
Preference number: 6 (lower is better)
Translates to: AGGGQLGLAGLL*GHSHATGWGMK
Trigger: CTTCATGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS GCA 72 bp ACCTCGCCCAGGGCCCTCTCCATGGGCATCTTGAGCTaGGGGCGGTTGAGGGGCTCCAGCTCGTTCCCTTGG +
Preference number: 6 (lower is better)
Translates to: TSPRALSMGILS*GRLRGSSSFPW
Trigger: CCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCTGGGCGAGGT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 90 bp ACCTCGCCCAGGGCCCTCTCCATGGGCATCTTGAGCTGCGGGCGGTaGAGGGGCTCCAGCTCGTTCCCTTGGATCTGGTGCAGCAAGGCC +
Preference number: 6 (lower is better)
Translates to: TSPRALSMGILSCGR*RGSSSFPWIWCSKA
Trigger: GGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCTGGGCGAGGT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp GCTGGGCTCCTCTGGGGGCACTCCCATGCGACTGGCTaGGGCATGAAGGCGGTGGGCATCCAACATCTCCAG +
Preference number: 6 (lower is better)
Translates to: AGLLWGHSHATG*GMKAVGIQHLQ
Trigger: CTGGAGATGTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp TGTGCTGAAGTGGAGCTGGTGGTGGCCAGCTGGGTCTaGCTGGGCTCCTCTGGGGGCACTCCCATGCGACTG +
Preference number: 6 (lower is better)
Translates to: CAEVELVVASWV*LGSSGGTPMRL
Trigger: CAGTCGCATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 72 bp TCCTCTGGGGGCACTCCCATGCGACTGGCTGGGGCATaGAGGCGGTGGGCATCCAACATCTCCAGGAGCAGG +
Preference number: 6 (lower is better)
Translates to: SSGGTPMRLAGA*RRWASNISRSR
Trigger: CCTGCTCCTGGAGATGTTGGATGCCCACCGCCTTCATGCCCCAGCCAGTCGCATGGGAGTGCCCCCAGAGGA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 72 bp AGGGCCCTCTCCATGGGCATCTTGAGCTGCGGGCGGTaGAGGGGCTCCAGCTCGTTCCCTTGGATCTGGTGC +
Preference number: 6 (lower is better)
Translates to: RALSMGILSCGR*RGSSSFPWIWC
Trigger: GCACCAGATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 72 bp ACGTATACCTCGCCCAGGGCCCTCTCCATGGGCATCTaGAGCTGCGGGCGGTTGAGGGGCTCCAGCTCGTTC +
Preference number: 6 (lower is better)
Translates to: TYTSPRALSMGI*SCGRLRGSSSF
Trigger: GAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCTGGGCGAGGTATACGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp AGCTGCGGGCGGTTGAGGGGCTCCAGCTCGTTCCCTTaGATCTGGTGCAGCAAGGCCATTCCCGAGGCTTTG +
Preference number: 6 (lower is better)
Translates to: SCGRLRGSSSFP*IWCSKAIPEAL
Trigger: CAAAGCCTCGGGAATGGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp AAGGAATGTGCTGAAGTGGAGCTGGTGGTGGCCAGCTaGGTCTGGCTGGGCTCCTCTGGGGGCACTCCCATG +
Preference number: 6 (lower is better)
Translates to: KECAEVELVVAS*VWLGSSGGTPM
Trigger: CATGGGAGTGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 72 bp GAGCTGCGGGCGGTTGAGGGGCTCCAGCTCGTTCCCTaGGATCTGGTGCAGCAAGGCCATTCCCGAGGCTTT +
Preference number: 6 (lower is better)
Translates to: ELRAVEGLQLVP*DLVQQGHSRGF
Trigger: AAAGCCTCGGGAATGGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 90 bp CTGTTGTCCACGTATACCTCGCCCAGGGCCCTCTCCATGGGCATCTaGAGCTGCGGGCGGTTGAGGGGCTCCAGCTCGTTCCCTTGGATC +
Preference number: 6 (lower is better)
Translates to: LLSTYTSPRALSMGI*SCGRLRGSSSFPWI
Trigger: GATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCCATGGAGAGGGCCCTGGGCGAGGTATACGTGGACAACAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 90 bp GGGCATCTTGAGCTGCGGGCGGTTGAGGGGCTCCAGCTCGTTCCCTaGGATCTGGTGCAGCAAGGCCATTCCCGAGGCTTTGGTGTGAAG +
Preference number: 6 (lower is better)
Translates to: GHLELRAVEGLQLVP*DLVQQGHSRGFGVK
Trigger: CTTCACACCAAAGCCTCGGGAATGGCCTTGCTGCACCAGATCCAAGGGAACGAGCTGGAGCCCCTCAACCGCCCGCAGCTCAAGATGCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp AGGTTTGTAAGGAATGTGCTGAAGTGGAGCTGGTGGTaGCCAGCTGGGTCTGGCTGGGCTCCTCTGGGGGCA +
Preference number: 6 (lower is better)
Translates to: RFVRNVLKWSWW*PAGSGWAPLGA
Trigger: TGCCCCCAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTACAAACCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp TGTAGTAGGTTTGTAAGGAATGTGCTGAAGTGGAGCTaGTGGTGGCCAGCTGGGTCTGGCTGGGCTCCTCTG +
Preference number: 6 (lower is better)
Translates to: CSRFVRNVLKWS*WWPAGSGWAPL
Trigger: CAGAGGAGCCCAGCCAGACCCAGCTGGCCACCACCAGCTCCACTTCAGCACATTCCTTACAAACCTACTACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 72 bp GCACCCATTTCATTTCGGCCTTCCAAGTCATCTCTCTaGCGCTTGTGCTTCAACATTCTCCCTCCTCGGCGG +
Preference number: 6 (lower is better)
Translates to: APISFRPSKSSL*RLCFNILPPRR
Trigger: CCGCCGAGGAGGGAGAATGTTGAAGCACAAGCGTCAGAGAGATGACTTGGAAGGCCGAAATGAAATGGGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 72 bp AGGGCTTGGCCAAAGGTTGGCAGCCCTCATGTCTCCTaGAGCACCCATTTCATTTCGGCCTTCCAAGTCATC +
Preference number: 6 (lower is better)
Translates to: RAWPKVGSPHVS*STHFISAFQVI
Trigger: GATGACTTGGAAGGCCGAAATGAAATGGGTGCTTCAGGAGACATGAGGGCTGCCAACCTTTGGCCAAGCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 72 bp GGCCAGCTTTGGCCATCAGGTGGATCAAAGTGTCTGTaGTCTTGTCCAGGACACGGTGGATGTGGTCCTTCT +
Preference number: 6 (lower is better)
Translates to: GQLWPSGGSKCL*SCPGHGGCGPS
Trigger: AGAAGGACCACATCCACCGTGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAAGCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 90 bp GTCAGGCCAGCTTTGGCCATCAGGTGGATCAAAGTGTCTGTGATCTaGTCCAGGACACGGTGGATGTGGTCCTTCTCTTCCAGAGACTTC +
Preference number: 6 (lower is better)
Translates to: VRPALAIRWIKVSVI*SRTRWMWSFSSRDF
Trigger: GAAGTCTCTGGAAGAGAAGGACCACATCCACCGTGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAAGCTGGCCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 72 bp TGCCTTTGTTACTCATGTGCCGGATATGGGAAAGAATaGGAAGGAGCTGAGCTAGGCGGCGATGCTGCTGCT +
Preference number: 6 (lower is better)
Translates to: CLCYSCAGYGKE*EGAELGGDAAA
Trigger: AGCAGCAGCATCGCCGCCTAGCTCAGCTCCTTCTCATTCTTTCCCATATCCGGCACATGAGTAACAAAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp CTGGGGATGGGACTAGTATCACATGGCAGGCTCTCTTaGCCTTGGTTAGAGAGTGCAGACTACAGGTTGGTT +
Preference number: 6 (lower is better)
Translates to: LGMGLVSHGRLS*PWLESADYRLV
Trigger: AACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATCCCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS CAA 72 bp GCTTTGGCCATCAGGTGGATCAAAGTGTCTGTGATCTaGTCCAGGACACGGTGGATGTGGTCCTTCTCTTCC +
Preference number: 6 (lower is better)
Translates to: ALAIRWIKVSVI*SRTRWMWSFSS
Trigger: GGAAGAGAAGGACCACATCCACCGTGTCCTGGACAAGATCACAGACACTTTGATCCACCTGATGGCCAAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 72 bp TCTGGGGATGGGACTAGTATCACATGGCAGGCTCTCTaGGCCTTGGTTAGAGAGTGCAGACTACAGGTTGGT +
Preference number: 6 (lower is better)
Translates to: SGDGTSITWQAL*ALVRECRLQVG
Trigger: ACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATCCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS TCA 72 bp TCAAGTCCCCAAAGCCTGGCACTCTCTTTGCCCAGTTaGTCATATGAACCAGCTCCCTATCTGCTAGGTTGG +
Preference number: 6 (lower is better)
Translates to: SSPQSLALSLPS*SYEPAPYLLGW
Trigger: CCAACCTAGCAGATAGGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS TCA 72 bp CTCTTCTCCCTGCAGGTTCATCATGCGGAACCGACTTaGCGTAGCCAGCAACATGTCAAAGATCTCCACCAT +
Preference number: 6 (lower is better)
Translates to: LFSLQVHHAEPT*RSQQHVKDLHH
Trigger: ATGGTGGAGATCTTTGACATGTTGCTGGCTACGTCAAGTCGGTTCCGCATGATGAACCTGCAGGGAGAAGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp ACATTTCTGGACTCTGGGGATGGGACTAGTATCACATaGCAGGCTCTCTTGGCCTTGGTTAGAGAGTGCAGA +
Preference number: 6 (lower is better)
Translates to: TFLDSGDGTSIT*QALLALVRECR
Trigger: TCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATCCCCAGAGTCCAGAAATGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS GCA 72 bp ATGGAGATTCAAGTCCCCAAAGCCTGGCACTCTCTTTaGCCAGTTGATCATATGAACCAGCTCCCTATCTGC +
Preference number: 6 (lower is better)
Translates to: MEIQVPKAWHSL*PVDHMNQLPIC
Trigger: GCAGATAGGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAGTGCCAGGCTTTGGGGACTTGAATCTCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CCA 72 bp TGGATCAAAGTGTCTGTGATCTTGTCCAGGACACGGTaGATGTGGTCCTTCTCTTCCAGAGACTTCAAGGTG +
Preference number: 6 (lower is better)
Translates to: WIKVSVILSRTR*MWSFSSRDFKV
Trigger: CACCTTGAAGTCTCTGGAAGAGAAGGACCACATCCACCGTGTCCTGGACAAGATCACAGACACTTTGATCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 90 bp TTTCTGGACTCTGGGGATGGGACTAGTATCACATGGCAGGCTCTCTaGGCCTTGGTTAGAGAGTGCAGACTACAGGTTGGTTTTTCTTGT +
Preference number: 6 (lower is better)
Translates to: FLDSGDGTSITWQAL*ALVRECRLQVGFSC
Trigger: ACAAGAAAAACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATCCCCAGAGTCCAGAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS TCA 72 bp CCAAAGCCTGGCACTCTCTTTGCCCAGTTGATCATATaGACCAGCTCCCTATCTGCTAGGTTGGTCAATAAG +
Preference number: 6 (lower is better)
Translates to: PKPGTLFAQLII*TSSLSARLVNK
Trigger: CTTATTGACCAACCTAGCAGATAGGGAGCTGGTTCATATGATCAACTGGGCAAAGAGAGTGCCAGGCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS GCA 72 bp AAAATGATGGATTTGAGGCACACAAACTCTTCTCCCTaGAGGTTCATCATGCGGAACCGACTTGACGTAGCC +
Preference number: 6 (lower is better)
Translates to: KMMDLRHTNSSP*RFIMRNRLDVA
Trigger: GGCTACGTCAAGTCGGTTCCGCATGATGAACCTGCAGGGAGAAGAGTTTGTGTGCCTCAAATCCATCATTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS GCA 72 bp ATCACATGGCAGGCTCTCTTGGCCTTGGTTAGAGAGTaGAGACTACAGGTTGGTTTTTCTTGTACCCTGGTT +
Preference number: 6 (lower is better)
Translates to: ITWQALLALVRE*RLQVGFSCTLV
Trigger: AACCAGGGTACAAGAAAAACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS CAA 72 bp GATGGGACTAGTATCACATGGCAGGCTCTCTTGGCCTaGGTTAGAGAGTGCAGACTACAGGTTGGTTTTTCT +
Preference number: 6 (lower is better)
Translates to: DGTSITWQALLA*VRECRLQVGFS
Trigger: AGAAAAACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS CCA 72 bp ATGGGACTAGTATCACATGGCAGGCTCTCTTGGCCTTaGTTAGAGAGTGCAGACTACAGGTTGGTTTTTCTT +
Preference number: 6 (lower is better)
Translates to: MGLVSHGRLSWP*LESADYRLVFL
Trigger: AAGAAAAACCAACCTGTAGTCTGCACTCTCTAACCAAGGCCAAGAGAGCCTGCCATGTGATACTAGTCCCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS CAA 72 bp GTAGTCCATCTTCTGCCTGACATAAAGGAATCCCAGTaGTCTGAAGTCCTTGTAGGTCCTTGTCAGAGCTTC +
Preference number: 6 (lower is better)
Translates to: VVHLLPDIKESQ*SEVLVGPCQSF
Trigger: GAAGCTCTGACAAGGACCTACAAGGACTTCAGACAACTGGGATTCCTTTATGTCAGGCAGAAGATGGACTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS CCA 72 bp CCTCCGGTTCTTGTCAATGGTGCATTGGTTTGTAGCTaGACACATGTAGTCATTGTGTCCTTGAATGCTTCT +
Preference number: 6 (lower is better)
Translates to: PPVLVNGALVCS*THVVIVSLNAS
Trigger: AGAAGCATTCAAGGACACAATGACTACATGTGTCCAGCTACAAACCAATGCACCATTGACAAGAACCGGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000067086.14
ENSMUST00000105588.8
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 72 bp AACGTGTACACTCCGGAATTAAGCAAAATGATGGATTaGAGGCACACAAACTCTTCTCCCTGCAGGTTCATC +
Preference number: 6 (lower is better)
Translates to: NVYTPELSKMMD*RHTNSSPCRFI
Trigger: GATGAACCTGCAGGGAGAAGAGTTTGTGTGCCTCAAATCCATCATTTTGCTTAATTCCGGAGTGTACACGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8
CDS CAA 72 bp CCTTGTAGGTCCTTGTCAGAGCTTCTTTTCAAAGTCTaGACAGAATGTTCTCTGTCCAGGAGCAAGTTAGGA +
Preference number: 6 (lower is better)
Translates to: PCRSLSELLFKV*TECSLSRSKLG
Trigger: TCCTAACTTGCTCCTGGACAGAGAACATTCTGTCAAGACTTTGAAAAGAAGCTCTGACAAGGACCTACAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000105588.8
CDS GCA 72 bp CAACGTTCTTGCATTTCATGTTGTAGAGATGCTCCATaGCTTTGTTACTCATGTGCCGGATATGGGAAAGAA +
Preference number: 6 (lower is better)
Translates to: QRSCISCCRDAP*LCYSCAGYGKE
Trigger: TTCTTTCCCATATCCGGCACATGAGTAACAAAGGCATGGAGCATCTCTACAACATGAAATGCAAGAACGTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000067086.14
ENSMUST00000105589.2
ENSMUST00000105590.8