Pregenerated sensors for ESP8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000090747Ensembl transcript IDs: ENSMUST00000171813.4
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | TTGTTTATTTATAATCTCTACCCTCCTTTACTTGGGTaGGTAAACAAAGAGGTTGTAAGACTCAAAGAACCC | + |
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Preference number: 3 (lower is better) Translates to: LFIYNLYPPLLG*VNKEVVRLKEP Trigger: GGGTTCTTTGAGTCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAATAAACAA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR TCA 90 bp | AAGACTCAAAGAACCCTAATAATAGGCACAGCAGGTAGGACACCAGGGGCCTCCGGAGCAGCAGAATTATaGGAAACAACATCACTGGGA | + |
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Preference number: 4 (lower is better) Translates to: KTQRTLIIGTAGRTPGASGAAEL*ETTSLG Trigger: TCCCAGTGATGTTGTTTCTCATAATTCTGCTGCTCC...GGAGGCCCCTGGTGTCCTACCTGCTGTGCCTATTATTAGGGTTCTTTGAGTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR TCA 90 bp | TATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGACTCATGGTGGGATCTGCTTaGGTCCTTTCTTCAGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: YNLYPPLLGWVNKEVVRLMVGSA*VLSSEQ Trigger: TTGCTCTGAAGAAAGGACTCAAGCAGATCCCACCAT...GAGTCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR CCA 90 bp | TATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGACTCTATCAGCAGATATGGTaGGATCTGCTTGAGTCCTTT | + |
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Preference number: 4 (lower is better) Translates to: YNLYPPLLGWVNKEVVRLYQQIW*DLLESF Trigger: AAAGGACTCAAGCAGATCCCACCATATCTGCTGATA...GAGTCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR TCA 90 bp | TTGTTTATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTTCCACTTGCTGCTTCTaGGTACAACATTTGCTCAGG | + |
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Preference number: 4 (lower is better) Translates to: LFIYNLYPPLLGWVNKEVSTCCF*VQHLLR Trigger: CCTGAGCAAATGTTGTACTCAGAAGCAGCAAGTGGA...AACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAATAAACAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR TCA 90 bp | ATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGATATGGGGCATTCTTCTaGAATGTACCGTGTCCACTT | + |
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Preference number: 4 (lower is better) Translates to: IYNLYPPLLGWVNKEVVRYGAFF*NVPCPL Trigger: AAGTGGACACGGTACATTTCAGAAGAATGCCCCATA...TCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR CCA 90 bp | ATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGAAAGTTTCGTTCACATTaGCAGTCAGTCAGGTCAACC | + |
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Preference number: 4 (lower is better) Translates to: IYNLYPPLLGWVNKEVVRKFRSH*QSVRST Trigger: GGTTGACCTGACTGACTGCCAATGTGAACGAAACTT...TCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR GCA 90 bp | TATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGACTCTCTGAGTACAACATTTaGTCAGGACACTCAACATTT | + |
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Preference number: 4 (lower is better) Translates to: YNLYPPLLGWVNKEVVRLSEYNI*SGHSTF Trigger: AAATGTTGAGTGTCCTGAGCAAATGTTGTACTCAGA...GAGTCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR GCA 90 bp | CTTTTGTTTATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGAGATATGGTGGGATCTaGTTGAGTCCTTTCTTCAGA | + |
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Preference number: 4 (lower is better) Translates to: LLFIYNLYPPLLGWVNKERYGGI*LSPFFR Trigger: TCTGAAGAAAGGACTCAAGCAGATCCCACCATATCT...CTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAATAAACAAAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR TCA 90 bp | CTTTTGTTTATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGGTCAACCACAGTCTTaGAGTTTTTCTTGTTATCAG | + |
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Preference number: 4 (lower is better) Translates to: LLFIYNLYPPLLGWVNKEGQPQS*SFSCYQ Trigger: CTGATAACAAGAAAAACTTCAAGACTGTGGTTGACC...CTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAATAAACAAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR TCA 90 bp | TTGTTTATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTTTTTGTTTGGTACTTTaGATCCTATGGGGCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: LFIYNLYPPLLGWVNKEVFCLVL*ILWGIL Trigger: AAGAATGCCCCATAGGATTCAAAGTACCAAACAAAA...AACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAATAAACAA 36% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS TCA 90 bp | CTATGGGGCATTCTTCTGAAATGTACCGTGTCCACTTGCTGCTTCTaGGTACAACATTTGCTCAGGACACTCAACATTTTAGAAAGGTTT | + |
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Preference number: 5 (lower is better) Translates to: LWGILLKCTVSTCCF*VQHLLRTLNILERF Trigger: AAACCTTTCTAAAATGTTGAGTGTCCTGAGCAAATGTTGTACTCAGAAGCAGCAAGTGGACACGGTACATTTCAGAAGAATGCCCCATAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS CCA 90 bp | GCAGGAAGTGTACTCTCTAAGGACTCTATGAAGTTTCGTTCACATTaGCAGTCAGTCAGGTCAACCACAGTCTTGAAGTTTTTCTTGTTA | + |
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Preference number: 5 (lower is better) Translates to: AGSVLSKDSMKFRSH*QSVRSTTVLKFFLL Trigger: TAACAAGAAAAACTTCAAGACTGTGGTTGACCTGACTGACTGCCAATGTGAACGAAACTTCATAGAGTCCTTAGAGAGTACACTTCCTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR CAA 90 bp | TACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGACTCAAAGAACCCTTTCTTCAGAGCAAATaGATGGGAGCAGCAGAATTA | + |
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Preference number: 5 (lower is better) Translates to: YPPLLGWVNKEVVRLKEPFLQSK*MGAAEL Trigger: TAATTCTGCTGCTCCCATCAATTTGCTCTGAAGAAA...GGGTTCTTTGAGTCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS TCA 90 bp | GTCTTGAAGTTTTTCTTGTTATCAGCAGATATGGTGGGATCTGCTTaGGTCCTTTCTTCAGAGCAAATTGATGGGAGCAGCAGAATTATG | + |
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Preference number: 5 (lower is better) Translates to: VLKFFLLSADMVGSA*VLSSEQIDGSSRIM Trigger: CATAATTCTGCTGCTCCCATCAATTTGCTCTGAAGAAAGGACTCAAGCAGATCCCACCATATCTGCTGATAACAAGAAAAACTTCAAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR CAA 90 bp | TATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGACTCAAACAGTGTTTGATCTaGATTGGAGGCAGGAAGTGT | + |
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Preference number: 5 (lower is better) Translates to: YNLYPPLLGWVNKEVVRLKQCLI*IGGRKC Trigger: ACACTTCCTGCCTCCAATCAAGATCAAACACTGTTT...GAGTCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR CAA 90 bp | ATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTAAGAGTCTTGAAGTTTTTCTaGTTATCAGCAGATATGGTG | + |
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Preference number: 5 (lower is better) Translates to: IYNLYPPLLGWVNKEVVRVLKFF*LSADMV Trigger: CACCATATCTGCTGATAACAAGAAAAACTTCAAGAC...TCTTACAACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS-3UTR CAA 90 bp | TTGTTTATTTATAATCTCTACCCTCCTTTACTTGGGTGGGTAAACAAAGAGGTTGTTTTGTTTGGTACTTaGAATCCTATGGGGCATTCT | + |
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Preference number: 5 (lower is better) Translates to: LFIYNLYPPLLGWVNKEVVLFGT*NPMGHS Trigger: AGAATGCCCCATAGGATTCAAAGTACCAAACAAAAC...AACCTCTTTGTTTACCCACCCAAGTAAAGGAGGGTAGAGATTATAAATAAACAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS CAA 72 bp | CCTATGGGGCATTCTTCTGAAATGTACCGTGTCCACTaGCTGCTTCTGAGTACAACATTTGCTCAGGACACT | + |
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Preference number: 6 (lower is better) Translates to: PMGHSSEMYRVH*LLLSTTFAQDT Trigger: AGTGTCCTGAGCAAATGTTGTACTCAGAAGCAGCAAGTGGACACGGTACATTTCAGAAGAATGCCCCATAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS CAA 72 bp | CGTTCACATTGGCAGTCAGTCAGGTCAACCACAGTCTaGAAGTTTTTCTTGTTATCAGCAGATATGGTGGGA | + |
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Preference number: 6 (lower is better) Translates to: RSHWQSVRSTTV*KFFLLSADMVG Trigger: TCCCACCATATCTGCTGATAACAAGAAAAACTTCAAGACTGTGGTTGACCTGACTGACTGCCAATGTGAACG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS TCA 72 bp | TTTTTCTTGTTATCAGCAGATATGGTGGGATCTGCTTaGGTCCTTTCTTCAGAGCAAATTGATGGGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: FFLLSADMVGSA*VLSSEQIDGSS Trigger: GCTGCTCCCATCAATTTGCTCTGAAGAAAGGACTCAAGCAGATCCCACCATATCTGCTGATAACAAGAAAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS TCA 72 bp | TTTGTTTGGTACTTTGAATCCTATGGGGCATTCTTCTaGAATGTACCGTGTCCACTTGCTGCTTCTGAGTAC | + |
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Preference number: 6 (lower is better) Translates to: FVWYFESYGAFF*NVPCPLAASEY Trigger: GTACTCAGAAGCAGCAAGTGGACACGGTACATTTCAGAAGAATGCCCCATAGGATTCAAAGTACCAAACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS CCA 72 bp | GTACTCTCTAAGGACTCTATGAAGTTTCGTTCACATTaGCAGTCAGTCAGGTCAACCACAGTCTTGAAGTTT | + |
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Preference number: 6 (lower is better) Translates to: VLSKDSMKFRSH*QSVRSTTVLKF Trigger: AAACTTCAAGACTGTGGTTGACCTGACTGACTGCCAATGTGAACGAAACTTCATAGAGTCCTTAGAGAGTAC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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| CDS TCA 72 bp | ATTCTTCTGAAATGTACCGTGTCCACTTGCTGCTTCTaGGTACAACATTTGCTCAGGACACTCAACATTTTA | + |
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Preference number: 6 (lower is better) Translates to: ILLKCTVSTCCF*VQHLLRTLNIL Trigger: TAAAATGTTGAGTGTCCTGAGCAAATGTTGTACTCAGAAGCAGCAAGTGGACACGGTACATTTCAGAAGAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000171813.4 |
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