Pregenerated sensors for ESP38 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000095886

Ensembl transcript IDs: ENSMUST00000178880.2, ENSMUST00000232743.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	TGTCATTTATTTTACTTTGGCAAACAGGTATTTCGAAGTCAACCTTaGGATCAGCAGATATATGGGGTTCTTCCTCAGTCCGTTTCAGTG	+
Preference number: 5 (lower is better) Translates to: CHLFYFGKQVFRSQP*DQQIYGVLPQSVSV Trigger: CACTGAAACGGACTGAGGAAGAACCCCATATATCTGCTGATCTCAAGGTTGACTTCGAAATACCTGTTTGCCAAAGTAAAATAAATGACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178880.2 ENSMUST00000232743.2
CDS CCA 72 bp	AGTCCGTTTCAGTGCCCTTCCTTCAGGAAGTATTGTTaGAAACACCAGAATGATGAAGAAATACATCAGTGG	+
Preference number: 6 (lower is better) Translates to: SPFQCPSFRKYC*KHQNDEEIHQW Trigger: CCACTGATGTATTTCTTCATCATTCTGGTGTTTCCAACAATACTTCCTGAAGGAAGGGCACTGAAACGGACT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000178880.2 ENSMUST00000232743.2
CDS TCA 72 bp	TTTTACTTTGGCAAACAGGTATTTCGAAGTCAACCTTaGGATCAGCAGATATATGGGGTTCTTCCTCAGTCC	+
Preference number: 6 (lower is better) Translates to: FYFGKQVFRSQP*DQQIYGVLPQS Trigger: GGACTGAGGAAGAACCCCATATATCTGCTGATCTCAAGGTTGACTTCGAAATACCTGTTTGCCAAAGTAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178880.2 ENSMUST00000232743.2
CDS CAA 72 bp	ATTTTACTTTGGCAAACAGGTATTTCGAAGTCAACCTaGAGATCAGCAGATATATGGGGTTCTTCCTCAGTC	+
Preference number: 6 (lower is better) Translates to: ILLWQTGISKST*RSADIWGSSSV Trigger: GACTGAGGAAGAACCCCATATATCTGCTGATCTCAAGGTTGACTTCGAAATACCTGTTTGCCAAAGTAAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178880.2 ENSMUST00000232743.2
CDS CAA 90 bp	ATGTCATTTATTTTACTTTGGCAAACAGGTATTTCGAAGTCAACCTaGAGATCAGCAGATATATGGGGTTCTTCCTCAGTCCGTTTCAGT	+
Preference number: 6 (lower is better) Translates to: MSFILLWQTGISKST*RSADIWGSSSVRFS Trigger: ACTGAAACGGACTGAGGAAGAACCCCATATATCTGCTGATCTCAAGGTTGACTTCGAAATACCTGTTTGCCAAAGTAAAATAAATGACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000178880.2 ENSMUST00000232743.2

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