RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ESP36 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000092322

Ensembl transcript IDs: ENSMUST00000172814.8, ENSMUST00000177882.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CAA 90 bp CCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCATACACTCTCATTCATCTaGTGTTTATGTGGTTATGTG +
Preference number: 3 (lower is better)
Translates to: PLLAQNTIRPQKWRTIFHTLSFI*CLCGYV
Trigger: CACATAACCACATAAACACAAGATGAATGAGAGTGT...ATGAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR TCA 90 bp CCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCATGTACCCTGCCTTCAGTaGGCATTGATGGTAGTGGCA +
Preference number: 4 (lower is better)
Translates to: PLLAQNTIRPQKWRTIFHVPCLQ*ALMVVA
Trigger: TGCCACTACCATCAATGCTCACTGAAGGCAGGGTAC...ATGAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR TCA 90 bp CCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCATATTTTGGGTTCTTTCTaGGTCTCTGGTAGTACCCTG +
Preference number: 4 (lower is better)
Translates to: PLLAQNTIRPQKWRTIFHILGSF*VSGSTL
Trigger: CAGGGTACTACCAGAGACTCAGAAAGAACCCAAAAT...ATGAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR TCA 90 bp ATCCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCTTCCCATTTGTCTTGTaGTCAGCAGATATTTTGGGT +
Preference number: 4 (lower is better)
Translates to: IHCLHRTLFALKNGELFFFPFVL*SADILG
Trigger: ACCCAAAATATCTGCTGATCACAAGACAAATGGGAA...GAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR CCA 90 bp CCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCATGATCAGCAGATATTTTaGGTTCTTTCTGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: PLLAQNTIRPQKWRTIFHDQQIF*VLSESL
Trigger: CAGAGACTCAGAAAGAACCCAAAATATCTGCTGATC...ATGAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR CCA 90 bp ATCCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCGATCAGCAGATATTTTaGGTTCTTTCTGAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: IHCLHRTLFALKNGELFFDQQIF*VLSESL
Trigger: CAGAGACTCAGAAAGAACCCAAAATATCTGCTGATC...GAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR TCA 90 bp ATCCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCAGTGTTAGTTGTTTGTaGAACAGAAGAACAGGTGTT +
Preference number: 4 (lower is better)
Translates to: IHCLHRTLFALKNGELFFSVSCL*NRRTGV
Trigger: AACACCTGTTCTTCTGTTTCACAAACAACTAACACT...GAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR GCA 90 bp ATCCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCGGTGTGTGTACATTTTaGTCCTTCAAACTCCTTTTT +
Preference number: 4 (lower is better)
Translates to: IHCLHRTLFALKNGELFFGVCTF*SFKLLF
Trigger: AAAAAGGAGTTTGAAGGAGCAAAATGTACACACACC...GAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000172814.8
CDS-3UTR CAA 90 bp ATCCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCTGGTGTGTGTACATTTaGCTCCTTCAAACTCCTTTT +
Preference number: 5 (lower is better)
Translates to: IHCLHRTLFALKNGELFFWCVYI*LLQTPF
Trigger: AAAAGGAGTTTGAAGGAGCAAAATGTACACACACCA...GAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000172814.8
CDS-3UTR CAA 90 bp CCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCATAGACAATATTCCCATTaGTCTTGTGATCAGCAGATA +
Preference number: 5 (lower is better)
Translates to: PLLAQNTIRPQKWRTIFHRQYSH*SCDQQI
Trigger: TATCTGCTGATCACAAGACAAATGGGAATATTGTCT...ATGAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS-3UTR CAA 90 bp ATCCACTGCTTGCACAGAACACTATTCGCCCTCAAAAATGGAGAACTATTTTTCAGACAATATTCCCATTaGTCTTGTGATCAGCAGATA +
Preference number: 5 (lower is better)
Translates to: IHCLHRTLFALKNGELFFRQYSH*SCDQQI
Trigger: TATCTGCTGATCACAAGACAAATGGGAATATTGTCT...GAAAAATAGTTCTCCATTTTTGAGGGCGAATAGTGTTCTGTGCAAGCAGTGGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS CCA 72 bp CAATATTCCCATTTGTCTTGTGATCAGCAGATATTTTaGGTTCTTTCTGAGTCTCTGGTAGTACCCTGCCTT +
Preference number: 6 (lower is better)
Translates to: QYSHLSCDQQIF*VLSESLVVPCL
Trigger: AAGGCAGGGTACTACCAGAGACTCAGAAAGAACCCAAAATATCTGCTGATCACAAGACAAATGGGAATATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS CAA 90 bp TTCTCATATTTTTGCAGTCAATCTCTTCAAAGACAATATTCCCATTaGTCTTGTGATCAGCAGATATTTTGGGTTCTTTCTGAGTCTCTG +
Preference number: 6 (lower is better)
Translates to: FSYFCSQSLQRQYSH*SCDQQIFWVLSESL
Trigger: CAGAGACTCAGAAAGAACCCAAAATATCTGCTGATCACAAGACAAATGGGAATATTGTCTTTGAAGAGATTGACTGCAAAAATATGAGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2
CDS CAA 72 bp TTTTGCAGTCAATCTCTTCAAAGACAATATTCCCATTaGTCTTGTGATCAGCAGATATTTTGGGTTCTTTCT +
Preference number: 6 (lower is better)
Translates to: FCSQSLQRQYSH*SCDQQIFWVLS
Trigger: AGAAAGAACCCAAAATATCTGCTGATCACAAGACAAATGGGAATATTGTCTTTGAAGAGATTGACTGCAAAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000172814.8
ENSMUST00000177882.2