Pregenerated sensors for ESP34 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092244Ensembl transcript IDs: ENSMUST00000173055.3, ENSMUST00000178654.2
Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAATTTACAACCCTCCATTaGTTGTTTGTTTGTGTGGAT | + |
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Preference number: 2 (lower is better) Translates to: CSREMDENKRAQKVSLFKFTTLH*LFVCVD Trigger: ATCCACACAAACAAACAATCAATGGAGGGTTGTAAA...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR-3UTR CCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAACTGGGTCCATTACTTaGAGTAACAACCTAGTTTTT | + |
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Preference number: 2 (lower is better) Translates to: CSREMDENKRAQKVSLFKTGSIT*SNNLVF Trigger: AAAAACTAGGTTGTTACTCCAAGTAATGGACCCAGT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR-3UTR CAA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAACCCTCCATTGATTGTTaGTTTGTGTGGATAAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: CSREMDENKRAQKVSLFKPSIDC*FVWISK Trigger: TTTACTTATCCACACAAACAAACAATCAATGGAGGG...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR-3UTR CAA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAATTTACAACCCTCCATaGATTGTTTGTTTGTGTGGA | + |
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Preference number: 3 (lower is better) Translates to: CSREMDENKRAQKVSLFKIYNPP*IVCLCG Trigger: TCCACACAAACAAACAATCAATGGAGGGTTGTAAAT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR-3UTR CAA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAAAAGTGGATTTTCACTaGAGCCTGAACAGATTAAAG | + |
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Preference number: 3 (lower is better) Translates to: CSREMDENKRAQKVSLFKKVDFH*SLNRLK Trigger: CTTTAATCTGTTCAGGCTCAAGTGAAAATCCACTTT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 40% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR CCA 72 bp | TGGGTCATATTAATGAATCTCACTGGGTCCATTACTTaGAGTAACAACCTAGTTTTTGGATATTTAAGGCAC | + |
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Preference number: 3 (lower is better) Translates to: WVILMNLTGSIT*SNNLVFGYLRH Trigger: GTGCCTTAAATATCCAAAAACTAGGTTGTTACTCCAAGTAATGGACCCAGTGAGATTCATTAATATGACCCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR TCA 72 bp | GGAAAGTTTTGTTATTGTTACCTAACAAAATTCCCTTaGTTGGGTCATATTAATGAATCTCACTGGGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: GKFCYCYLTKFP*LGHINESHWVH Trigger: ATGGACCCAGTGAGATTCATTAATATGACCCAATCAAGGGAATTTTGTTAGGTAACAATAACAAAACTTTCC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| 3UTR CCA 72 bp | ATGTATTTACAACCCTCCATTGATTGTTTGTTTGTGTaGATAAGTAAAGAGGATATAGCCCTAATGCAGAAT | + |
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Preference number: 3 (lower is better) Translates to: MYLQPSIDCLFV*ISKEDIALMQN Trigger: ATTCTGCATTAGGGCTATATCCTCTTTACTTATCCACACAAACAAACAATCAATGGAGGGTTGTAAATACAT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| CDS-3UTR TCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAACTCAGATGCAGATGTaGTACACAGCCTGCTATTCC | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKTQMQM*YTACYS Trigger: GGAATAGCAGGCTGTGTATCACATCTGCATCTGAGT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR TCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAATTCCTCCTTTCCTTGTaGAGTGGTGACTTTAGAAGT | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKFLLSL*SGDFRS Trigger: ACTTCTAAAGTCACCACTTCACAAGGAAAGGAGGAA...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR GCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAACAGGATTTCAGTTTCTaGTTCACTCTCCTTTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKQDFSF*FTLLCF Trigger: GAAGCAAAGGAGAGTGAAGCAGAAACTGAAATCCTG...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR TCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAATGGTAACAAGAGAATaGGGAGAAAACACATCACTG | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKMVTRE*GENTSL Trigger: CAGTGATGTGTTTTCTCCTCATTCTCTTGTTACCAT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| CDS-3UTR TCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAATCAATGAGTTCTTCCTaGTCCTTTTTCAGAACCACT | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKSMSSS*SFFRTT Trigger: AGTGGTTCTGAAAAAGGATCAGGAAGAACTCATTGA...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| CDS-3UTR TCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAACATCTTCTGAGTCAATaGGTTCTTCCTGATCCTTTT | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKHLLSQ*VLPDPF Trigger: AAAAGGATCAGGAAGAACTCATTGACTCAGAAGATG...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| CDS-3UTR GCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAAAGTTTGAACTCAGATaGAGATGTGATACACAGCCT | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKKFELR*RCDTQP Trigger: AGGCTGTGTATCACATCTGCATCTGAGTTCAAACTT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR GCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAATGCTTCACTCTCCTTTaGTTCTCTAATTCTTTGGGA | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKCFTLL*FSNSLG Trigger: TCCCAAAGAATTAGAGAAGCAAAGGAGAGTGAAGCA...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR CCA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAGCTTCTCTAATTCTTTaGGATTCCTCCTTTCCTTGT | + |
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Preference number: 4 (lower is better) Translates to: CSREMDENKRAQKVSLFKASLIL*DSSFPC Trigger: ACAAGGAAAGGAGGAATCCCAAAGAATTAGAGAAGC...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| 3UTR CAA 72 bp | GTATATGGAATGTATTTACAACCCTCCATTGATTGTTaGTTTGTGTGGATAAGTAAAGAGGATATAGCCCTA | + |
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Preference number: 4 (lower is better) Translates to: VYGMYLQPSIDC*FVWISKEDIAL Trigger: TAGGGCTATATCCTCTTTACTTATCCACACAAACAAACAATCAATGGAGGGTTGTAAATACATTCCATATAC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| CDS TCA 90 bp | GGAGAAAACACATCACTGGGAATGAAGCCATGGCTGAAACTCGATTaGTTGTTTCACAGGATTTCAGTTTCTGCTTCACTCTCCTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: GENTSLGMKPWLKLD*LFHRISVSASLSFA Trigger: AGCAAAGGAGAGTGAAGCAGAAACTGAAATCCTGTGAAACAATCAATCGAGTTTCAGCCATGGCTTCATTCCCAGTGATGTGTTTTCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR CAA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAATGCTTCTCTAATTCTTaGGGATTCCTCCTTTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: CSREMDENKRAQKVSLFKCFSNS*GFLLSL Trigger: CAAGGAAAGGAGGAATCCCAAAGAATTAGAGAAGCA...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR CAA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAATCCAAGCAAAGTGGTTaGATTGAAGAGTTACTCTTG | + |
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Preference number: 5 (lower is better) Translates to: CSREMDENKRAQKVSLFKSKQSG*IEELLL Trigger: CAAGAGTAACTCTTCAATCAAACCACTTTGCTTGGA...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS-3UTR CAA 90 bp | TGCTCAAGGGAGATGGATGAAAACAAGAGAGCCCAAAAAGTGAGTCTGTTCAAAATGGCTGAAACTCGATaGATTGTTTCACAGGATTTC | + |
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Preference number: 5 (lower is better) Translates to: CSREMDENKRAQKVSLFKMAETR*IVSQDF Trigger: GAAATCCTGTGAAACAATCAATCGAGTTTCAGCCAT...TTTGAACAGACTCACTTTTTGGGCTCTCTTGTTTTCATCCATCTCCCTTGAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS TCA 90 bp | ACTCTCCTTTGCTTCTCTAATTCTTTGGGATTCCTCCTTTCCTTGTaGAGTGGTGACTTTAGAAGTTTGAACTCAGATGCAGATGTGATA | + |
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Preference number: 5 (lower is better) Translates to: TLLCFSNSLGFLLSL*SGDFRSLNSDADVI Trigger: TATCACATCTGCATCTGAGTTCAAACTTCTAAAGTCACCACTTCACAAGGAAAGGAGGAATCCCAAAGAATTAGAGAAGCAAAGGAGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS TCA 90 bp | CTAATCAAGATAATTGATTCATCTTCTGAGTCAATGAGTTCTTCCTaGTCCTTTTTCAGAACCACTCCTTCAGTGAACATTGATGGTAAC | + |
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Preference number: 5 (lower is better) Translates to: LIKIIDSSSESMSSS*SFFRTTPSVNIDGN Trigger: GTTACCATCAATGTTCACTGAAGGAGTGGTTCTGAAAAAGGATCAGGAAGAACTCATTGACTCAGAAGATGAATCAATTATCTTGATTAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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| CDS CAA 90 bp | AGGAGAAAACACATCACTGGGAATGAAGCCATGGCTGAAACTCGATaGATTGTTTCACAGGATTTCAGTTTCTGCTTCACTCTCCTTTGC | + |
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Preference number: 6 (lower is better) Translates to: RRKHITGNEAMAETR*IVSQDFSFCFTLLC Trigger: GCAAAGGAGAGTGAAGCAGAAACTGAAATCCTGTGAAACAATCAATCGAGTTTCAGCCATGGCTTCATTCCCAGTGATGTGTTTTCTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS TCA 72 bp | ACATCACTGGGAATGAAGCCATGGCTGAAACTCGATTaGTTGTTTCACAGGATTTCAGTTTCTGCTTCACTC | + |
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Preference number: 6 (lower is better) Translates to: TSLGMKPWLKLD*LFHRISVSASL Trigger: GAGTGAAGCAGAAACTGAAATCCTGTGAAACAATCAATCGAGTTTCAGCCATGGCTTCATTCCCAGTGATGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS CAA 72 bp | CACATCACTGGGAATGAAGCCATGGCTGAAACTCGATaGATTGTTTCACAGGATTTCAGTTTCTGCTTCACT | + |
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Preference number: 6 (lower is better) Translates to: HITGNEAMAETR*IVSQDFSFCFT Trigger: AGTGAAGCAGAAACTGAAATCCTGTGAAACAATCAATCGAGTTTCAGCCATGGCTTCATTCCCAGTGATGTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS TCA 72 bp | TGTGATACACAGCCTGCTATTCCAAGCAAAGTGGTTTaGTTGAAGAGTTACTCTTGGCTTCTGATTCTTGAA | + |
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Preference number: 6 (lower is better) Translates to: CDTQPAIPSKVV*LKSYSWLLILE Trigger: TTCAAGAATCAGAAGCCAAGAGTAACTCTTCAATCAAACCACTTTGCTTGGAATAGCAGGCTGTGTATCACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000173055.3 |
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| CDS TCA 72 bp | ATAATTGATTCATCTTCTGAGTCAATGAGTTCTTCCTaGTCCTTTTTCAGAACCACTCCTTCAGTGAACATT | + |
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Preference number: 6 (lower is better) Translates to: IIDSSSESMSSS*SFFRTTPSVNI Trigger: AATGTTCACTGAAGGAGTGGTTCTGAAAAAGGATCAGGAAGAACTCATTGACTCAGAAGATGAATCAATTAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000173055.3 ENSMUST00000178654.2 |
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