Pregenerated sensors for ESP31 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000092342Ensembl transcript IDs: ENSMUST00000174742.3
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AAGTTTCATAGAGTGAAGCAAAGTGGATTTTCACTTGAGCCTGAACAGATTAAAAATCCTACCAAAAAGTaGCATGTGTACTTAAGGGAA | + |
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Preference number: 2 (lower is better) Translates to: KFHRVKQSGFSLEPEQIKNPTKK*HVYLRE Trigger: TTCCCTTAAGTACACATGTCACTTTTTGGTAGGATT...TTTAATCTGTTCAGGCTCAAGTGAAAATCCACTTTGCTTCACTCTATGAAACTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| 3UTR-3UTR CAA 90 bp | GTGACATGTGTACTTAAGGGAAAGGGTCTCAAACTCTCAGTAGTAACACCTTTACCCTCCATTCGTTGTTaGTTTGTATGGATAAGTAAA | + |
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Preference number: 3 (lower is better) Translates to: VTCVLKGKGLKLSVVTPLPSIRC*FVWISK Trigger: TTTACTTATCCATACAAACAAACAACGAATGGAGGG...TAAAGGTGTTACTACTGAGAGTTTGAGACCCTTTCCCTTAAGTACACATGTCAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| 3UTR TCA 72 bp | ACTCAAGATAATTCCTCTTGGAATCCTACCAAAAAGTaGCATGTGTACTTAAGGGAAAGGGTCTCAAACTCT | + |
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Preference number: 3 (lower is better) Translates to: TQDNSSWNPTKK*HVYLRERVSNS Trigger: AGAGTTTGAGACCCTTTCCCTTAAGTACACATGTCACTTTTTGGTAGGATTCCAAGAGGAATTATCTTGAGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| 3UTR TCA 72 bp | ATAGTTAGTACTGTAAACTCACAAAGTTTCATAGAGTaGAGCAAAGTGGATTTTCACTTGAGCCTGAACAGA | + |
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Preference number: 3 (lower is better) Translates to: IVSTVNSQSFIE*SKVDFHLSLNR Trigger: TCTGTTCAGGCTCAAGTGAAAATCCACTTTGCTTCACTCTATGAAACTTTGTGAGTTTACAGTACTAACTAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS-3UTR CCA 90 bp | GTGACATGTGTACTTAAGGGAAAGGGTCTCAAACTCTCAGTAGTAACACCTTTAACTGGGTCCATTACTTaGAGTAACAGCCTAGTTTTG | + |
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Preference number: 4 (lower is better) Translates to: VTCVLKGKGLKLSVVTPLTGSIT*SNSLVL Trigger: CAAAACTAGGCTGTTACTCCAAGTAATGGACCCAGT...TAAAGGTGTTACTACTGAGAGTTTGAGACCCTTTCCCTTAAGTACACATGTCAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS-3UTR TCA 90 bp | GCATTAGAAAGGTTGAGACTCACTGATTTAAGAAAGGGTAGGCTATTAATATTGCATCTTCAGAGTCAATaGGTTCTTCCTGATCGTTTT | + |
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Preference number: 4 (lower is better) Translates to: ALERLRLTDLRKGRLLILHLQSQ*VLPDRF Trigger: AAAACGATCAGGAAGAACTCATTGACTCTGAAGATG...CAATATTAATAGCCTACCCTTTCTTAAATCAGTGAGTCTCAACCTTTCTAATGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS TCA 90 bp | TCAATAAAGATCAATTGTTCATCTTCAGAGTCAATGAGTTCTTCCTaGTCGTTTTTCAGAACCGCTCCTTCGGTGAACATTGATGATAAC | + |
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Preference number: 5 (lower is better) Translates to: SIKINCSSSESMSSS*SFFRTAPSVNIDDN Trigger: GTTATCATCAATGTTCACCGAAGGAGCGGTTCTGAAAAACGATCAGGAAGAACTCATTGACTCTGAAGATGAACAATTGATCTTTATTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS-3UTR CAA 90 bp | AAGTTTCATAGAGTGAAGCAAAGTGGATTTTCACTTGAGCCTGAACAGATTAAAAGTAACAGCCTAGTTTaGGGATATTTAAGGCAGACA | + |
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Preference number: 5 (lower is better) Translates to: KFHRVKQSGFSLEPEQIKSNSLV*GYLRQT Trigger: TGTCTGCCTTAAATATCCCAAAACTAGGCTGTTACT...TTTAATCTGTTCAGGCTCAAGTGAAAATCCACTTTGCTTCACTCTATGAAACTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS CCA 72 bp | TGGGTCATGTTAATGAATCTCACTGGGTCCATTACTTaGAGTAACAGCCTAGTTTTGGGATATTTAAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: WVMLMNLTGSIT*SNSLVLGYLRQ Trigger: CTGCCTTAAATATCCCAAAACTAGGCTGTTACTCCAAGTAATGGACCCAGTGAGATTCATTAACATGACCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS TCA 72 bp | ATCAATTGTTCATCTTCAGAGTCAATGAGTTCTTCCTaGTCGTTTTTCAGAACCGCTCCTTCGGTGAACATT | + |
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Preference number: 6 (lower is better) Translates to: INCSSSESMSSS*SFFRTAPSVNI Trigger: AATGTTCACCGAAGGAGCGGTTCTGAAAAACGATCAGGAAGAACTCATTGACTCTGAAGATGAACAATTGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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| CDS CAA 72 bp | AATCCCTTGTATATATCCGCATTCAATAAAGATCAATaGTTCATCTTCAGAGTCAATGAGTTCTTCCTGATC | + |
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Preference number: 6 (lower is better) Translates to: NPLYISAFNKDQ*FIFRVNEFFLI Trigger: GATCAGGAAGAACTCATTGACTCTGAAGATGAACAATTGATCTTTATTGAATGCGGATATATACAAGGGATT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000174742.3 |
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