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Pregenerated sensors for ESP18 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000094024

Ensembl transcript IDs: ENSMUST00000179848.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp ACACAATTATTCCTTGTAAATTTAAAACAGAGGGTTTCAACCTATTaGTACCCACCACTTTGGGGGCCAAATGTTCATTTCACAGCGGGT +
Preference number: 2 (lower is better)
Translates to: TQLFLVNLKQRVSTY*YPPLWGPNVHFTAG
Trigger: ACCCGCTGTGAAATGAACATTTGGCCCCCAAAGTGGTGGGTACAAATAGGTTGAAACCCTCTGTTTTAAATTTACAAGGAATAATTGTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS-3UTR GCA 90 bp TTGGTGCCTAACATTAGGCCCTTGAGTGATAATGTAGTATGCCAAGTGCATTATCTCAGTCCATTTCACTaGCCTTCCTTCAGGAAGTAT +
Preference number: 4 (lower is better)
Translates to: LVPNIRPLSDNVVCQVHYLSPFH*PSFRKY
Trigger: ATACTTCCTGAAGGAAGGGCAGTGAAATGGACTGAG...ATAATGCACTTGGCATACTACATTATCACTCAAGGGCCTAATGTTAGGCACCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS-3UTR TCA 90 bp TTGGTGCCTAACATTAGGCCCTTGAGTGATAATGTAGTATGCCAAGTGCATTATGGCAAAGAGGTATTTTaGAGTCATCTTTCAGATCAG +
Preference number: 4 (lower is better)
Translates to: LVPNIRPLSDNVVCQVHYGKEVF*SHLSDQ
Trigger: CTGATCTGAAAGATGACTTCAAAATACCTCTTTGCC...ATAATGCACTTGGCATACTACATTATCACTCAAGGGCCTAATGTTAGGCACCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS TCA 90 bp TCTTTCTCAGTCCATTTCACTGCCCTTCCTTCAGGAAGTATTGTTTaGTACACCAGAATGATGAGGAAAAACATCAGTGGGAATGAAGCC +
Preference number: 5 (lower is better)
Translates to: SFSVHFTALPSGSIV*YTRMMRKNISGNEA
Trigger: GGCTTCATTCCCACTGATGTTTTTCCTCATCATTCTGGTGTATCAAACAATACTTCCTGAAGGAAGGGCAGTGAAATGGACTGAGAAAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS GCA 90 bp TTTCAGATCAGCAGATATCTCGGGTTCTTTCTCAGTCCATTTCACTaGCCTTCCTTCAGGAAGTATTGTTTGATACACCAGAATGATGAG +
Preference number: 5 (lower is better)
Translates to: FQISRYLGFFLSPFH*PSFRKYCLIHQNDE
Trigger: CTCATCATTCTGGTGTATCAAACAATACTTCCTGAAGGAAGGGCAGTGAAATGGACTGAGAAAGAACCCGAGATATCTGCTGATCTGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS-3UTR CAA 90 bp TTGGTGCCTAACATTAGGCCCTTGAGTGATAATGTAGTATGCCAAGTGCATTATCTTTGTCGGAGCCAATaGACAACCAGCAAACATCTA +
Preference number: 5 (lower is better)
Translates to: LVPNIRPLSDNVVCQVHYLCRSQ*TTSKHL
Trigger: TAGATGTTTGCTGGTTGTCAATTGGCTCCGACAAAG...ATAATGCACTTGGCATACTACATTATCACTCAAGGGCCTAATGTTAGGCACCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS-3UTR CAA 90 bp TTGGTGCCTAACATTAGGCCCTTGAGTGATAATGTAGTATGCCAAGTGCATTATAACAATGGTTTGTCTTaGTCGGAGCCAATTGACAAC +
Preference number: 5 (lower is better)
Translates to: LVPNIRPLSDNVVCQVHYNNGLS*SEPIDN
Trigger: GTTGTCAATTGGCTCCGACAAAGACAAACCATTGTT...ATAATGCACTTGGCATACTACATTATCACTCAAGGGCCTAATGTTAGGCACCAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS-3UTR CAA 90 bp TTGGTGCCTAACATTAGGCCCTTGAGTGATAATGTAGTATGCCAAGTGCATTATTGGCAAAGAGGTATTTaGAAGTCATCTTTCAGATCA +
Preference number: 5 (lower is better)
Translates to: LVPNIRPLSDNVVCQVHYWQRGI*KSSFRS
Trigger: TGATCTGAAAGATGACTTCAAAATACCTCTTTGCCA...ATAATGCACTTGGCATACTACATTATCACTCAAGGGCCTAATGTTAGGCACCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS GCA 72 bp AGCAGATATCTCGGGTTCTTTCTCAGTCCATTTCACTaGCCTTCCTTCAGGAAGTATTGTTTGATACACCAG +
Preference number: 6 (lower is better)
Translates to: SRYLGFFLSPFH*PSFRKYCLIHQ
Trigger: CTGGTGTATCAAACAATACTTCCTGAAGGAAGGGCAGTGAAATGGACTGAGAAAGAACCCGAGATATCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS TCA 72 bp GTCCATTTCACTGCCCTTCCTTCAGGAAGTATTGTTTaGTACACCAGAATGATGAGGAAAAACATCAGTGGG +
Preference number: 6 (lower is better)
Translates to: VHFTALPSGSIV*YTRMMRKNISG
Trigger: CCCACTGATGTTTTTCCTCATCATTCTGGTGTATCAAACAATACTTCCTGAAGGAAGGGCAGTGAAATGGAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2
CDS CAA 90 bp CAGCAAACATCTATGTTATTTCTTATAGTTTGGCAAAGAGGTATTTaGAAGTCATCTTTCAGATCAGCAGATATCTCGGGTTCTTTCTCA +
Preference number: 6 (lower is better)
Translates to: QQTSMLFLIVWQRGI*KSSFRSADISGSFS
Trigger: TGAGAAAGAACCCGAGATATCTGCTGATCTGAAAGATGACTTCAAAATACCTCTTTGCCAAACTATAAGAAATAACATAGATGTTTGCTG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000179848.2