Pregenerated sensors for ESP16 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000096345

Ensembl transcript IDs: ENSMUST00000178037.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS-3UTR TCA 90 bp	AAGAGTGGACATAGATTTTTGGACACTAGGAGGCTCCTAGTTTATTTAAGAAAAGAAACACCAGAAAGATaGGAAAATACATCAGTGGGA	+
Preference number: 4 (lower is better) Translates to: KSGHRFLDTRRLLVYLRKETPER*ENTSVG Trigger: TCCCACTGATGTATTTTCTCATCTTTCTGGTGTTTC...TTTTCTTAAATAAACTAGGAGCCTCCTAGTGTCCAAAAATCTATGTCCACTCTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000178037.2
CDS-3UTR CCA 90 bp	AAGAGTGGACATAGATTTTTGGACACTAGGAGGCTCCTAGTTTATTTAAGAAAATTCAGGAAGTATTGTTaGAAACACCAGAAAGATGAG	+
Preference number: 4 (lower is better) Translates to: KSGHRFLDTRRLLVYLRKFRKYC*KHQKDE Trigger: CTCATCTTTCTGGTGTTTCCAACAATACTTCCTGAA...TTTTCTTAAATAAACTAGGAGCCTCCTAGTGTCCAAAAATCTATGTCCACTCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178037.2
CDS CCA 90 bp	GAGCCACGTGACATCCTCATAAGATCTAACCTATCTCTTATAGTTTaGCAAAATGATATTTCGAAGTCATCGTTGAGATCAGCAGATATA	+
Preference number: 5 (lower is better) Translates to: EPRDILIRSNLSLIV*QNDISKSSLRSADI Trigger: TATATCTGCTGATCTCAACGATGACTTCGAAATATCATTTTGCCAAACTATAAGAGATAGGTTAGATCTTATGAGGATGTCACGTGGCTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178037.2
CDS-3UTR CAA 90 bp	AAGAGTGGACATAGATTTTTGGACACTAGGAGGCTCCTAGTTTATTTAAGAAAAAGATCAGCAGATATATaGGGTTCTTTCTCAGTCCGT	+
Preference number: 5 (lower is better) Translates to: KSGHRFLDTRRLLVYLRKRSADI*GSFSVR Trigger: ACGGACTGAGAAAGAACCCAATATATCTGCTGATCT...TTTTCTTAAATAAACTAGGAGCCTCCTAGTGTCCAAAAATCTATGTCCACTCTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000178037.2
CDS CCA 72 bp	GACATCCTCATAAGATCTAACCTATCTCTTATAGTTTaGCAAAATGATATTTCGAAGTCATCGTTGAGATCA	+
Preference number: 6 (lower is better) Translates to: DILIRSNLSLIV*QNDISKSSLRS Trigger: TGATCTCAACGATGACTTCGAAATATCATTTTGCCAAACTATAAGAGATAGGTTAGATCTTATGAGGATGTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178037.2

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