Pregenerated sensors for ESP15 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095104Ensembl transcript IDs: ENSMUST00000178929.3
Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGGCCCATGATGATTTTACTGAGATTCCACACAATTATTCCTTGTGAATTTAAGGGAGTGGAAATAACTTaGTCAACAAAACATGAGGAA | + |
|
Preference number: 2 (lower is better) Translates to: GPMMILLRFHTIIPCEFKGVEIT*STKHEE Trigger: TTCCTCATGTTTTGTTGACCAAGTTATTTCCACTCC...CTTAAATTCACAAGGAATAATTGTGTGGAATCTCAGTAAAATCATCATGGGCCC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178929.3 |
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| CDS-3UTR CCA 90 bp | ATTCCTTGTGAATTTAAGATAGAGTGTTTTAACCTATTTGTACCCACCCCTTGGTTCAAGAAGTATTGTTaGAAACACCAGAATGATGAG | + |
|
Preference number: 4 (lower is better) Translates to: IPCEFKIECFNLFVPTPWFKKYC*KHQNDE Trigger: CTCATCATTCTGGTGTTTCCAACAATACTTCTTGAA...CCAAGGGGTGGGTACAAATAGGTTAAAACACTCTATCTTAAATTCACAAGGAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178929.3 |
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| 3UTR CAA 72 bp | ATTTGTCAAATGAGTTTCGAATTGGTGAGCAAAATTTaGTTATTTTTGCCTAGCATTAGGCCCTTGAGTGAT | + |
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Preference number: 4 (lower is better) Translates to: ICQMSFELVSKI*LFLPSIRPLSD Trigger: ATCACTCAAGGGCCTAATGCTAGGCAAAAATAACAAAATTTTGCTCACCAATTCGAAACTCATTTGACAAAT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000178929.3 |
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