Pregenerated sensors for ESP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073396Ensembl transcript IDs: ENSMUST00000161110.2, ENSMUST00000233513.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTGATGCCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTGCTaGCTATGGCTACGTTTAGTATTTAAGTGGAGGGAGGAGAGACTA | + |
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Preference number: 1 (lower is better) Translates to: VMPAAFTSGSEHILC*LWLRLVFKWREERL Trigger: TAGTCTCTCCTCCCTCCACTTAAATACTAAACGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR GCA 90 bp | GAAGTGATGCCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTaGTGCCTATGGCTACGTTTAGTATTTAAGTGGAGGGAGGAGAGA | + |
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Preference number: 1 (lower is better) Translates to: EVMPAAFTSGSEHIL*CLWLRLVFKWREER Trigger: TCTCTCCTCCCTCCACTTAAATACTAAACGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCACTTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR CCA 90 bp | CCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTGCTGCCTATaGCTACGTTTAGTATTTAAGTGGAGGGAGGAGAGACTAGTTTAT | + |
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Preference number: 1 (lower is better) Translates to: PAAFTSGSEHILCCL*LRLVFKWREERLVY Trigger: ATAAACTAGTCTCTCCTCCCTCCACTTAAATACTAAACGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR TCA 90 bp | ACATGTGCATTTAATAAAAGGAAGGTTAGACCATTAGTTCTGAAGTaGTGCCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTGCT | + |
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Preference number: 1 (lower is better) Translates to: TCAFNKRKVRPLVLK*CLLLSHLVQNTYFA Trigger: AGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCACTTCAGAACTAATGGTCTAACCTTCCTTTTATTAAATGCACATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGTTGAGAGAGAACCTGGTAAAATCCACAGCAGGTATGACACTAGGAGCCTCCTAACTCTGGTCCTGTaGACCCTAGGGGGTATAATT | + |
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Preference number: 2 (lower is better) Translates to: GVEREPGKIHSRYDTRSLLTLVL*TLGGII Trigger: AATTATACCCCCTAGGGTTCACAGGACCAGAGTTAG...GAGGCTCCTAGTGTCATACCTGCTGTGGATTTTACCAGGTTCTCTCTCAACTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR TCA 90 bp | ACCATTAGTTCTGAAGTGATGCCTGCTGCTTTCACATCTGGTTCAGAACACATACTAACTCTGGTCCTGTaGACCCTAGGGGGTATAATT | + |
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Preference number: 2 (lower is better) Translates to: TISSEVMPAAFTSGSEHILTLVL*TLGGII Trigger: AATTATACCCCCTAGGGTTCACAGGACCAGAGTTAG...TATGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCACTTCAGAACTAATGGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR TCA 90 bp | AGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTCCATTAGTTCTGAAGTaGTGCCTGCTGCTTTCACAT | + |
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Preference number: 2 (lower is better) Translates to: RARDPCEFTKNVCHEITCPLVLK*CLLLSH Trigger: ATGTGAAAGCAGCAGGCATCACTTCAGAACTAATGG...ACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTCGTTTAGTATTTAAGTaGAGGGAGGAGAGACTAGTT | + |
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Preference number: 2 (lower is better) Translates to: RARDPCEFTKNVCHEITCRLVFK*REERLV Trigger: AACTAGTCTCTCCTCCCTCCACTTAAATACTAAACG...ACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTGCATTTTTATATAATTGCCCTTaGTCCCTAACTCTGGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: RDPCEFTKNVCHEITCAFLYNCP*SLTLVL Trigger: CAGGACCAGAGTTAGGGACCAAGGGCAATTATATAA...AAATGCACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR CCA 90 bp | ACCATTAGTTCTGAAGTGATGCCTGCTGCTTTCACATCTGGTTCAGAACACATACATTTTGCTTATATCTaGGTGGTTAACCAAATAGGA | + |
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Preference number: 2 (lower is better) Translates to: TISSEVMPAAFTSGSEHIHFAYI*VVNQIG Trigger: TCCTATTTGGTTAACCACCCAGATATAAGCAAAATG...TATGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCACTTCAGAACTAATGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTGCATTTCGTTTAGTATTTAAGTaGAGGGAGGAGAGACTAGTT | + |
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Preference number: 2 (lower is better) Translates to: RDPCEFTKNVCHEITCAFRLVFK*REERLV Trigger: AACTAGTCTCTCCTCCCTCCACTTAAATACTAAACG...AAATGCACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR CCA 90 bp | AGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTGCATTTCATTTTGCTTATATCTaGGTGGTTAACCAAATAGGA | + |
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Preference number: 2 (lower is better) Translates to: RDPCEFTKNVCHEITCAFHFAYI*VVNQIG Trigger: TCCTATTTGGTTAACCACCCAGATATAAGCAAAATG...AAATGCACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR GCA 72 bp | GCTGCTTTCACATCTGGTTCAGAACACATACTTTGCTaGCTATGGCTACGTTTAGTATTTAAGTGGAGGGAG | + |
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Preference number: 3 (lower is better) Translates to: AAFTSGSEHILC*LWLRLVFKWRE Trigger: CTCCCTCCACTTAAATACTAAACGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR GCA 72 bp | CCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTaGTGCCTATGGCTACGTTTAGTATTTAAGTGGAGG | + |
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Preference number: 3 (lower is better) Translates to: PAAFTSGSEHIL*CLWLRLVFKWR Trigger: CCTCCACTTAAATACTAAACGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR CCA 72 bp | TTCACATCTGGTTCAGAACACATACTTTGCTGCCTATaGCTACGTTTAGTATTTAAGTGGAGGGAGGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: FTSGSEHILCCL*LRLVFKWREER Trigger: TCTCTCCTCCCTCCACTTAAATACTAAACGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR TCA 72 bp | TTATATAATTGCCCTTGGTCCCTAACTCTGGTCCTGTaGACCCTAGGGGGTATAATTCTGAAATTTACTGTG | + |
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Preference number: 3 (lower is better) Translates to: LYNCPWSLTLVL*TLGGIILKFTV Trigger: CACAGTAAATTTCAGAATTATACCCCCTAGGGTTCACAGGACCAGAGTTAGGGACCAAGGGCAATTATATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR-3UTR CAA 90 bp | TATGGAAGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATATTTCCAGACTACATTTaGCTTATATCTGGGTGGTTA | + |
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Preference number: 3 (lower is better) Translates to: YGRARDPCEFTKNVCHEIFPDYI*LISGWL Trigger: TAACCACCCAGATATAAGCAAAATGTAGTCTGGAAA...TATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCTTCCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| 3UTR TCA 72 bp | TTTAATAAAAGGAAGGTTAGACCATTAGTTCTGAAGTaGTGCCTGCTGCTTTCACATCTGGTTCAGAACACA | + |
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Preference number: 3 (lower is better) Translates to: FNKRKVRPLVLK*CLLLSHLVQNT Trigger: TGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCACTTCAGAACTAATGGTCTAACCTTCCTTTTATTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | GCCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTGCTGCCTATGGCTACGGCTCTTTGTACTTCTTaGGGGTCAGGGTTTTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: ACCFHIWFRTHTLLPMATALCTS*GSGFFK Trigger: CTTGAAAAACCCTGACCCTCAAGAAGTACAAAGAGC...CGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | CTAAAGGGTAGAGGTCATGCTTTATATAATTGCCCTTGGTCCCTAACTCTGGTCGAACCCTTCCTTCAGTaGTCATGGATGGCAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LKGRGHALYNCPWSLTLVEPFLQ*SWMAAV Trigger: TACTGCTGCCATCCATGATCACTGAAGGAAGGGTTC...GACCAGAGTTAGGGACCAAGGGCAATTATATAAAGCATGACCTCTACCCTTTAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | AGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTGCATTTGAACCCTTCCTTCAGTaGTCATGGATGGCAGCAGTA | + |
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Preference number: 4 (lower is better) Translates to: RDPCEFTKNVCHEITCAFEPFLQ*SWMAAV Trigger: TACTGCTGCCATCCATGATCACTGAAGGAAGGGTTC...AAATGCACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | ACCATTAGTTCTGAAGTGATGCCTGCTGCTTTCACATCTGGTTCAGAACACATAGCAGCAGTAGAATTATaGGAAATAACAACACTGGTA | + |
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Preference number: 4 (lower is better) Translates to: TISSEVMPAAFTSGSEHIAAVEL*EITTLV Trigger: TACCAGTGTTGTTATTTCTCATAATTCTACTGCTGC...TATGTGTTCTGAACCAGATGTGAAAGCAGCAGGCATCACTTCAGAACTAATGGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | AGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTGCATTTGCTCTTTGTACTTCTTaGGGGTCAGGGTTTTTCAAG | + |
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Preference number: 4 (lower is better) Translates to: RDPCEFTKNVCHEITCAFALCTS*GSGFFK Trigger: CTTGAAAAACCCTGACCCTCAAGAAGTACAAAGAGC...AAATGCACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | TATGGAAGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAGCAGCAGTAGAATTATaGGAAATAACAACACTGGTA | + |
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Preference number: 4 (lower is better) Translates to: YGRARDPCEFTKNVCHEIAAVEL*EITTLV Trigger: TACCAGTGTTGTTATTTCTCATAATTCTACTGCTGC...TATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCTTCCATA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | TCCAGACTACATTTTGCTTATATCTGGGTGGTTAACCAAATAGGATGTAGGAGTTCGTGGTTTGTCTTTTaGTCAGCAAATATGGTAGCT | + |
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Preference number: 4 (lower is better) Translates to: SRLHFAYIWVVNQIGCRSSWFVF*SANMVA Trigger: AGCTACCATATTTGCTGATCAAAAGACAAACCACGA...ACTCCTACATCCTATTTGGTTAACCACCCAGATATAAGCAAAATGTAGTCTGGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR TCA 90 bp | TATGGAAGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATACTGGTAATGATGTCATaGCATAAAACTTGTTGTCAC | + |
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Preference number: 4 (lower is better) Translates to: YGRARDPCEFTKNVCHEILVMMS*HKTCCH Trigger: GTGACAACAAGTTTTATGTCATGACATCATTACCAG...TATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCTTCCATA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | GCCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTGCTGCCTATGGCTACGAGTCAGCCTCGTGGTTaGTCTTTTGATCAGCAAATA | + |
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Preference number: 5 (lower is better) Translates to: ACCFHIWFRTHTLLPMATSQPRG*SFDQQI Trigger: TATTTGCTGATCAAAAGACAAACCACGAGGCTGACT...CGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | GCCTGCTGCTTTCACATCTGGTTCAGAACACATACTTTGCTGCCTATGGCTACGTGGTCTTTAACCAACTaGTCTAATTCACCAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: ACCFHIWFRTHTLLPMATWSLTN*SNSPRA Trigger: TGCCCTTGGTGAATTAGACAAGTTGGTTAAAGACCA...CGTAGCCATAGGCAGCAAAGTATGTGTTCTGAACCAGATGTGAAAGCAGCAGGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | CTAAAGGGTAGAGGTCATGCTTTATATAATTGCCCTTGGTCCCTAACTCTGGTCGGCTCTTTGTACTTCTaGAGGGTCAGGGTTTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: LKGRGHALYNCPWSLTLVGSLYF*RVRVFQ Trigger: TTGAAAAACCCTGACCCTCAAGAAGTACAAAGAGCC...GACCAGAGTTAGGGACCAAGGGCAATTATATAAAGCATGACCTCTACCCTTTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | TATGGAAGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATACTCGTGGTTTGTCTTTaGATCAGCAAATATGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: YGRARDPCEFTKNVCHEILVVCL*ISKYGS Trigger: GCTACCATATTTGCTGATCAAAAGACAAACCACGAG...TATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCTTCCATA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | TATGGAAGAGCGAGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAAGTCAGCCTCGTGGTTaGTCTTTTGATCAGCAAATA | + |
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Preference number: 5 (lower is better) Translates to: YGRARDPCEFTKNVCHEISQPRG*SFDQQI Trigger: TATTTGCTGATCAAAAGACAAACCACGAGGCTGACT...TATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCTCGCTCTTCCATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | TCCAGACTACATTTTGCTTATATCTGGGTGGTTAACCAAATAGGATGTAGGAGTTGGTCTTTAACCAACTaGTCTAATTCACCAAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: SRLHFAYIWVVNQIGCRSWSLTN*SNSPRA Trigger: TGCCCTTGGTGAATTAGACAAGTTGGTTAAAGACCA...ACTCCTACATCCTATTTGGTTAACCACCCAGATATAAGCAAAATGTAGTCTGGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS-3UTR CAA 90 bp | AGGGACCCATGTGAATTCACTAAGAATGTTTGCCATGAAATAACATGTGCATTTCTCGTGGTTTGTCTTTaGATCAGCAAATATGGTAGC | + |
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Preference number: 5 (lower is better) Translates to: RDPCEFTKNVCHEITCAFLVVCL*ISKYGS Trigger: GCTACCATATTTGCTGATCAAAAGACAAACCACGAG...AAATGCACATGTTATTTCATGGCAAACATTCTTAGTGAATTCACATGGGTCCCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS CAA 72 bp | GGCACAGAGGATCCTCGCCAAGGCTCTTTGTACTTCTaGAGGGTCAGGGTTTTTCAAGTCAGCCTCGTGGTT | + |
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Preference number: 6 (lower is better) Translates to: GTEDPRQGSLYF*RVRVFQVSLVV Trigger: AACCACGAGGCTGACTTGAAAAACCCTGACCCTCAAGAAGTACAAAGAGCCTTGGCGAGGATCCTCTGTGCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS TCA 72 bp | GCACAGAGGATCCTCGCCAAGGCTCTTTGTACTTCTTaGGGGTCAGGGTTTTTCAAGTCAGCCTCGTGGTTT | + |
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Preference number: 6 (lower is better) Translates to: AQRILAKALCTS*GSGFFKSASWF Trigger: AAACCACGAGGCTGACTTGAAAAACCCTGACCCTCAAGAAGTACAAAGAGCCTTGGCGAGGATCCTCTGTGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS CAA 72 bp | TTCACCAAGGGCACAGAGGATCCTCGCCAAGGCTCTTaGTACTTCTTGAGGGTCAGGGTTTTTCAAGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: FTKGTEDPRQGS*YFLRVRVFQVS Trigger: GCTGACTTGAAAAACCCTGACCCTCAAGAAGTACAAAGAGCCTTGGCGAGGATCCTCTGTGCCCTTGGTGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS CAA 72 bp | CCGGCCAGTAAAGTCTTTAGGCAGTTTAAACTCCTGTaGACCAGCATTTGCCTGGTCTTTAACCAACTTGTC | + |
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Preference number: 6 (lower is better) Translates to: PASKVFRQFKLL*TSICLVFNQLV Trigger: GACAAGTTGGTTAAAGACCAGGCAAATGCTGGTCAACAGGAGTTTAAACTGCCTAAAGACTTTACTGGCCGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS TCA 72 bp | CGGCCAGTAAAGTCTTTAGGCAGTTTAAACTCCTGTTaGCCAGCATTTGCCTGGTCTTTAACCAACTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: RPVKSLGSLNSC*PAFAWSLTNLS Trigger: AGACAAGTTGGTTAAAGACCAGGCAAATGCTGGTCAACAGGAGTTTAAACTGCCTAAAGACTTTACTGGCCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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| CDS CAA 72 bp | GTCAGGGTTTTTCAAGTCAGCCTCGTGGTTTGTCTTTaGATCAGCAAATATGGTAGCTTCTTTTCCAGTCTG | + |
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Preference number: 6 (lower is better) Translates to: VRVFQVSLVVCL*ISKYGSFFSSL Trigger: CAGACTGGAAAAGAAGCTACCATATTTGCTGATCAAAAGACAAACCACGAGGCTGACTTGAAAAACCCTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000161110.2 ENSMUST00000233513.2 |
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