Pregenerated sensors for ESF1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045624Ensembl transcript IDs: ENSMUST00000046030.8
Found 55 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTaGCTTGTGAGAGCTGGGAACCAAACACGGATGCTCTGCAAAAGC | + |
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Preference number: 1 (lower is better) Translates to: PGKGTGSLKLHMAVS*LVRAGNQTRMLCKS Trigger: GCTTTTGCAGAGCATCCGTGTTTGGTTCCCAGCTCTCACAAGGCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR CCA 90 bp | CTGTGTGTGAATATTTTGCCTGTAACTATGTTTATGCAAACACTATaGGCCAGCCATGCCCATGGAGGCCAGGAAAAGGCACCGGGTCTC | + |
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Preference number: 1 (lower is better) Translates to: LCVNILPVTMFMQTL*ASHAHGGQEKAPGL Trigger: GAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATAGTTACAGGCAAAATATTCACACACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR GCA 90 bp | TATTTTGCCTGTAACTATGTTTATGCAAACACTATGGGCCAGCCATaGCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACAT | + |
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Preference number: 1 (lower is better) Translates to: YFACNYVYANTMGQP*PWRPGKGTGSLKLH Trigger: ATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATAGTTACAGGCAAAATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR-3UTR TCA 90 bp | ATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAACTTGAGTATTCTTTATTGCTaGGCCATCTCTCCAGCCCCA | + |
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Preference number: 2 (lower is better) Translates to: ICFLPSEIKVLHIHIFNLSILYC*AISPAP Trigger: TGGGGCTGGAGAGATGGCTCAGCAATAAAGAATACT...CAAGTTGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR GCA 72 bp | TGTAACTATGTTTATGCAAACACTATGGGCCAGCCATaGCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: CNYVYANTMGQP*PWRPGKGTGSL Trigger: GAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATAGTTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR-3UTR CAA 90 bp | GAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCCTCACCAGTATTCTTTATaGCTGAGCCATCTCTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: EARKRHRVSQITYGCELPHQYSL*LSHLSS Trigger: GCTGGAGAGATGGCTCAGCAATAAAGAATACTGGTG...AGGCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR CCA 72 bp | CAAATTACATATGGCTGTGAGCTGCCTTGTGAGAGCTaGGAACCAAACACGGATGCTCTGCAAAAGCACCAG | + |
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Preference number: 3 (lower is better) Translates to: QITYGCELPCES*EPNTDALQKHQ Trigger: CTGGTGCTTTTGCAGAGCATCCGTGTTTGGTTCCCAGCTCTCACAAGGCAGCTCACAGCCATATGTAATTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR CCA 72 bp | TATGTTTATGCAAACACTATGGGCCAGCCATGCCCATaGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTA | + |
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Preference number: 3 (lower is better) Translates to: YVYANTMGQPCP*RPGKGTGSLKL Trigger: TAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| 3UTR TCA 72 bp | CGGATGCTCTGCAAAAGCACCAGTATTCTTTATTGCTaGGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTT | + |
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Preference number: 3 (lower is better) Translates to: RMLCKSTSILYC*AISPAPKQNKF Trigger: AAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGAATACTGGTGCTTTTGCAGAGCATCCG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | ACATATGGCTGTGAGCTGCCTTGTGAGAGCTGGGAACCAAACACGGATGCTCTGGGCTTTCCCGTGTCCTaGTGTGCTCTCTCTACTGCT | + |
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Preference number: 4 (lower is better) Translates to: TYGCELPCESWEPNTDALGFPVS*CALSTA Trigger: AGCAGTAGAGAGAGCACAGCAGGACACGGGAAAGCC...CAGAGCATCCGTGTTTGGTTCCCAGCTCTCACAAGGCAGCTCACAGCCATATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | TGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCGCGGGATCCATGGGTTaGTTCTGTGTTGGCTTTCCC | + |
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Preference number: 4 (lower is better) Translates to: WRPGKGTGSLKLHMAVSCAGSMG*FCVGFP Trigger: GGGAAAGCCAACACAGAAGCAACCCATGGATCCCGC...GCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GCCATGCCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCCAGAGGGATCCAAATTaGACAGGTGGGAAGTATACA | + |
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Preference number: 4 (lower is better) Translates to: AMPMEARKRHRVSQITYGQRDPN*TGGKYT Trigger: TGTATACTTCCCACCTGTTCAATTTGGATCCCTCTG...GCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GCCATGCCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCATCAGAATCAGAGTCTaGAAGGTCATAGAAGCGCTT | + |
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Preference number: 4 (lower is better) Translates to: AMPMEARKRHRVSQITYGIRIRV*KVIEAL Trigger: AAGCGCTTCTATGACCTTTCAGACTCTGATTCTGAT...GCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GCCATGCCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCCCATTGCAGCAGATGTaGAATACTTTGGCTTATATG | + |
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Preference number: 4 (lower is better) Translates to: AMPMEARKRHRVSQITYGPLQQM*NTLAYM Trigger: CATATAAGCCAAAGTATTTCACATCTGCTGCAATGG...GCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | GCCAGCCATGCCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATAACCATCATTGTCTTTTaGCATTATGACTGGAACCAC | + |
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Preference number: 4 (lower is better) Translates to: ASHAHGGQEKAPGLSNYITIIVF*HYDWNH Trigger: GTGGTTCCAGTCATAATGGCAAAAGACAATGATGGT...TATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGCTGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CCA 90 bp | TGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCAGGTACTGGAATCTTTaGTCCTTAGCTTTCCTTTGG | + |
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Preference number: 4 (lower is better) Translates to: WRPGKGTGSLKLHMAVSCRYWNL*SLAFLW Trigger: CCAAAGGAAAGCTAAGGACCAAAGATTCCAGTACCT...GCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | TCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAATGGTCCTTTGAAACCCGCCTaGACCGCTGGTCATCCATTA | + |
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Preference number: 4 (lower is better) Translates to: SLLLSHLSSPKAEQVYNGPLKPA*TAGHPL Trigger: TAATGGATGACCAGCGGTTCAGGCGGGTTTCAAAGG...ACCATTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GCCAGCCATGCCCATGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATACAAAGTAGGGATCATTaGAATCAACATCAGAAGGAA | + |
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Preference number: 4 (lower is better) Translates to: ASHAHGGQEKAPGLSNYIQSRDH*NQHQKE Trigger: TTCCTTCTGATGTTGATTTCAATGATCCCTACTTTG...TATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCATGGGCATGGCTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCCTTCTGAATCTATCTTCTaGGGTTTCTGTGAGTTTTTC | + |
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Preference number: 4 (lower is better) Translates to: EARKRHRVSQITYGCELPSESIF*GFCEFF Trigger: GAAAAACTCACAGAAACCTCAGAAGATAGATTCAGA...AGGCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | TGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCTTTCTGGCTTGGAACTaGTCTGTTTTGTTTTTCACA | + |
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Preference number: 4 (lower is better) Translates to: WRPGKGTGSLKLHMAVSCFLAWN*SVLFFT Trigger: TGTGAAAAACAAAACAGAGCAGTTCCAAGCCAGAAA...GCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GTATTCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAAAGTGATCTCCACCGTTaGTGTTCCCATTGCAGCAGA | + |
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Preference number: 4 (lower is better) Translates to: VFFIAEPSLQPQSRTSLQSDLHR*CSHCSR Trigger: TCTGCTGCAATGGGAACATCAACGGTGGAGATCACT...TTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGAATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | GAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCCTTTGCTTTTCTCTCTTTaGCTTAGAAGAACTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: EARKRHRVSQITYGCELPLLFSL*LRRTHC Trigger: ACAATGAGTTCTTCTAAGGCAAAGAGAGAAAAGCAA...AGGCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CCA 90 bp | TCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAATGGTACCCGCCTGAACCGCTaGTCATCCATTATTTCTTGT | + |
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Preference number: 4 (lower is better) Translates to: SLLLSHLSSPKAEQVYNGTRLNR*SSIISC Trigger: ACAAGAAATAATGGATGACCAGCGGTTCAGGCGGGT...ACCATTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GCTTCAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTAAATCTGGGATCCTTTaGAACCCGCCTGAACCGCTG | + |
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Preference number: 4 (lower is better) Translates to: ASEICFLPSEIKVLHIHIKSGIL*NPPEPL Trigger: CAGCGGTTCAGGCGGGTTTCAAAGGATCCCAGATTT...AATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTGAAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | TCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAATGGTCATCTTCTCCTATGTTaGCTCCTTCTTCACCTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SLLLSHLSSPKAEQVYNGHLLLC*LLLHLL Trigger: CAGAAGGTGAAGAAGGAGTCAACATAGGAGAAGATG...ACCATTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | AAATTACATATGGCTGTGAGCTGCCTTGTGAGAGCTGGGAACCAAACACGGATGTCGCTTTCTTCTGACTaGGTATTTTGCTTTCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KLHMAVSCLVRAGNQTRMSLSSD*VFCFLH Trigger: ATGAAGAAAGCAAAATACTCAGTCAGAAGAAAGCGA...CATCCGTGTTTGGTTCCCAGCTCTCACAAGGCAGCTCACAGCCATATGTAATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | CAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCACTCACTAGCACTATCTaGATCCTCCTCCAGGGCATC | + |
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Preference number: 4 (lower is better) Translates to: QRSASCLQRLRYYIYIFSLTSTI*ILLQGI Trigger: GATGCCCTGGAGGAGGATTCAGATAGTGCTAGTGAG...TGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | GCTTCAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTCCCGTGTCCTGCTGTaGTCTCTCTACTGCTTGAAT | + |
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Preference number: 4 (lower is better) Translates to: ASEICFLPSEIKVLHIHISRVLL*SLYCLN Trigger: ATTCAAGCAGTAGAGAGAGCACAGCAGGACACGGGA...AATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTGAAGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | GTATTCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAAGAAACCGAGCATCACTaGCATTTACCTCAAAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: VFFIAEPSLQPQSRTSLQETEHH*HLPQSH Trigger: ATGACTTTGAGGTAAATGTCAGTGATGCTCGGTTTC...TTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGAATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | ATTTTGCCTGTAACTATGTTTATGCAAACACTATGGGCCAGCCATGCCCATGGACTTCTGAGGTTTCTGTaGGTTTTTCATTTTCTGAAC | + |
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Preference number: 4 (lower is better) Translates to: ILPVTMFMQTLWASHAHGLLRFL*VFHFLN Trigger: GTTCAGAAAATGAAAAACTCACAGAAACCTCAGAAG...TCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATAGTTACAGGCAAAAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | ATTTTGCCTGTAACTATGTTTATGCAAACACTATGGGCCAGCCATGCCCATGGACAATCTTGTCATAATTaGAGTGTTTCTTGCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: ILPVTMFMQTLWASHAHGQSCHN*SVSCCP Trigger: AGGACAGCAAGAAACACTTCAATTATGACAAGATTG...TCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATAGTTACAGGCAAAAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | GCTTCAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTGTGGGAAGTATACATTaGCTGAAACCGAGCATCACT | + |
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Preference number: 4 (lower is better) Translates to: ASEICFLPSEIKVLHIHIVGSIH*LKPSIT Trigger: AGTGATGCTCGGTTTCAGGCAATGTATACTTCCCAC...AATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTGAAGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | TCAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCATCAGTTTCTTCCTCTaGAGATGCGCTGTCTTTTGC | + |
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Preference number: 4 (lower is better) Translates to: SEICFLPSEIKVLHIHIFISFFL*RCAVFC Trigger: GCAAAAGACAGCGCATCTTCAGAGGAAGAAACTGAT...GAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | CAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCATTTGACCATCTCTTCTaGACTCTCCTTAAGACCTGG | + |
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Preference number: 4 (lower is better) Translates to: QRSASCLQRLRYYIYIFSFDHLF*TLLKTW Trigger: CCAGGTCTTAAGGAGAGTGCAGAAGAGATGGTCAAA...TGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CCA 90 bp | TCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAATGGTTTAAACTTTTTATCATaGAACATGGCTCGAAACCTC | + |
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Preference number: 4 (lower is better) Translates to: SLLLSHLSSPKAEQVYNGLNFLS*NMARNL Trigger: GAGGTTTCGAGCCATGTTCCATGATAAAAAGTTTAA...ACCATTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | CAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCATATGACTGGAACCACTaGTTGCTTTTCTCTCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: QRSASCLQRLRYYIYIFSYDWNH*LLFSLC Trigger: GCAAAGAGAGAAAAGCAATCAGTGGTTCCAGTCATA...TGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | CAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAGCTCTCTCTACTGCTTaGATAAGAAGTTCTTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: QRSASCLQRLRYYIYIFSALSTA*IRSSSF Trigger: GAAGGAAGAACTTCTTATTCAAGCAGTAGAGAGAGC...TGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | ATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAACTTGTTCTTCACCTTCTGGTaGTTCTTCTACCTCCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ICFLPSEIKVLHIHIFNLFFTFW*FFYLLF Trigger: GAAGAGGAGGTAGAAGAAGCACCAGAAGGTGAAGAA...CAAGTTGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR TCA 90 bp | CAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAGACCTGGAACCCATTTaGTTTCCATTTCCATATCAT | + |
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Preference number: 4 (lower is better) Translates to: QRSASCLQRLRYYIYIFSDLEPI*FPFPYH Trigger: ATGATATGGAAATGGAAATCAAATGGGTTCCAGGTC...TGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CCA 90 bp | ATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAACTTGCCATTTCAGAGGTACTaGAATCTTTGGTCCTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: ICFLPSEIKVLHIHIFNLPFQRY*NLWSLA Trigger: AGCTAAGGACCAAAGATTCCAGTACCTCTGAAATGG...CAAGTTGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR GCA 90 bp | ATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAACTTGACTGGAACCACTGATTaGTTTTCTCTCTTTGCCTTA | + |
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Preference number: 4 (lower is better) Translates to: ICFLPSEIKVLHIHIFNLTGTTD*FSLFAL Trigger: TAAGGCAAAGAGAGAAAAGCAATCAGTGGTTCCAGT...CAAGTTGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | TGGAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCCCCTCCAACTTGTTTTaGACCATCTCTTCTGCACTC | + |
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Preference number: 5 (lower is better) Translates to: WRPGKGTGSLKLHMAVSCPSNLF*TISSAL Trigger: GAGTGCAGAAGAGATGGTCAAAAACAAGTTGGAGGG...GCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | ACATATGGCTGTGAGCTGCCTTGTGAGAGCTGGGAACCAAACACGGATGCTCTGTTGGGCTTAAATGAGTaGAACAGAGCCAGCAAATCT | + |
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Preference number: 5 (lower is better) Translates to: TYGCELPCESWEPNTDALLGLNE*NRASKS Trigger: AGATTTGCTGGCTCTGTTCAACTCATTTAAGCCCAA...CAGAGCATCCGTGTTTGGTTCCCAGCTCTCACAAGGCAGCTCACAGCCATATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | GAGGCCAGGAAAAGGCACCGGGTCTCTCAAATTACATATGGCTGTGAGCTGCCTTGCTCTCTCTACTGCTaGAATAAGAAGTTCTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: EARKRHRVSQITYGCELPCSLYC*NKKFFL Trigger: AAGGAAGAACTTCTTATTCAAGCAGTAGAGAGAGCA...AGGCAGCTCACAGCCATATGTAATTTGAGAGACCCGGTGCCTTTTCCTGGCCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | AAATTACATATGGCTGTGAGCTGCCTTGTGAGAGCTGGGAACCAAACACGGATGCCATCTTCTCCTATGTaGACTCCTTCTTCACCTTCT | + |
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Preference number: 5 (lower is better) Translates to: KLHMAVSCLVRAGNQTRMPSSPM*TPSSPS Trigger: AGAAGGTGAAGAAGGAGTCAACATAGGAGAAGATGG...CATCCGTGTTTGGTTCCCAGCTCTCACAAGGCAGCTCACAGCCATATGTAATTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | TCTTTATTGCTGAGCCATCTCTCCAGCCCCAAAGCAGAACAAGTTTACAATGGTGGTGGGAAGTATACATaGCCTGAAACCGAGCATCAC | + |
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Preference number: 5 (lower is better) Translates to: SLLLSHLSSPKAEQVYNGGGKYT*PETEHH Trigger: GTGATGCTCGGTTTCAGGCAATGTATACTTCCCACC...ACCATTGTAAACTTGTTCTGCTTTGGGGCTGGAGAGATGGCTCAGCAATAAAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | ATTTTGCCTGTAACTATGTTTATGCAAACACTATGGGCCAGCCATGCCCATGGATCAGAGGGATCCAAATaGAACAGGTGGGAAGTATAC | + |
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Preference number: 5 (lower is better) Translates to: ILPVTMFMQTLWASHAHGSEGSK*NRWEVY Trigger: GTATACTTCCCACCTGTTCAATTTGGATCCCTCTGA...TCCATGGGCATGGCTGGCCCATAGTGTTTGCATAAACATAGTTACAGGCAAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | ATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAACTTGGAGGTACTGGAATCTTaGGTCCTTAGCTTTCCTTTG | + |
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Preference number: 5 (lower is better) Translates to: ICFLPSEIKVLHIHIFNLEVLES*VLSFPL Trigger: CAAAGGAAAGCTAAGGACCAAAGATTCCAGTACCTC...CAAGTTGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | TCAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAGCCATCTCAGCCTTTaGTTTTTCCAGATCAGTTTC | + |
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Preference number: 5 (lower is better) Translates to: SEICFLPSEIKVLHIHIFSHLSL*FFQISF Trigger: GAAACTGATCTGGAAAAACAAAAGGCTGAGATGGCT...GAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS-3UTR CAA 90 bp | CAGAGATCTGCTTCCTGCCTTCAGAGATTAAGGTACTACATATACATATTTTCAGGCATTTTACCATCATaGTCTTTTGCCATTATGACT | + |
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Preference number: 5 (lower is better) Translates to: QRSASCLQRLRYYIYIFSGILPS*SFAIMT Trigger: AGTCATAATGGCAAAAGACAATGATGGTAAAATGCC...TGAAAATATGTATATGTAGTACCTTAATCTCTGAAGGCAGGAAGCAGATCTCTG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS CAA 72 bp | GCATGGACAAGGCGGGATCCATGGGTTGCTTCTGTGTaGGCTTTCCCGTGTCCTGCTGTGCTCTCTCTACTG | + |
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Preference number: 6 (lower is better) Translates to: AWTRRDPWVASV*AFPCPAVLSLL Trigger: CAGTAGAGAGAGCACAGCAGGACACGGGAAAGCCAACACAGAAGCAACCCATGGATCCCGCCTTGTCCATGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS CAA 72 bp | AGATTTAATCAGCATGGACAAGGCGGGATCCATGGGTaGCTTCTGTGTTGGCTTTCCCGTGTCCTGCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: RFNQHGQGGIHG*LLCWLSRVLLC Trigger: GCACAGCAGGACACGGGAAAGCCAACACAGAAGCAACCCATGGATCCCGCCTTGTCCATGCTGATTAAATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS CAA 90 bp | TTCTTCTACCTCCTCTTCATCCTCGCTAGAGGAAGCCAAGTAGGCTaGAAAGTCCATGTCCAAAAGCTCATCCTTTTTAAACTTCCTGTT | + |
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Preference number: 6 (lower is better) Translates to: FFYLLFILARGSQVG*KVHVQKLILFKLPV Trigger: AACAGGAAGTTTAAAAAGGATGAGCTTTTGGACATGGACTTTCAAGCCTACTTGGCTTCCTCTAGCGAGGATGAAGAGGAGGTAGAAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS CAA 90 bp | GAACTCATTGTTGAAGATTTCACCATTTCAGAGGTACTGGAATCTTaGGTCCTTAGCTTTCCTTTGGGCAAAGCTTCTACACTAAGGTCA | + |
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Preference number: 6 (lower is better) Translates to: ELIVEDFTISEVLES*VLSFPLGKASTLRS Trigger: TGACCTTAGTGTAGAAGCTTTGCCCAAAGGAAAGCTAAGGACCAAAGATTCCAGTACCTCTGAAATGGTGAAATCTTCAACAATGAGTTC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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| CDS TCA 72 bp | TTTGCTTTCTTCATCAGAGAGATCAGAATCAGAGTCTaGAAGGTCATAGAAGCGCTTCAAGTCTTCTGTAGT | + |
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Preference number: 6 (lower is better) Translates to: FAFFIREIRIRV*KVIEALQVFCS Trigger: ACTACAGAAGACTTGAAGCGCTTCTATGACCTTTCAGACTCTGATTCTGATCTCTCTGATGAAGAAAGCAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000046030.8 |
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