Pregenerated sensors for ERV3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000037482Ensembl transcript IDs: ENSMUST00000040941.3
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ATGGCAGAGTTACCTGGAGGGACTGAGCCAGGAGGAGCCTCAGCATaGGAACAGGAACCATTTGTTTCCCCCTTTCTGCAAAGTTTTTCC | + |
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Preference number: 1 (lower is better) Translates to: MAELPGGTEPGGASA*EQEPFVSPFLQSFS Trigger: GGAAAAACTTTGCAGAAAGGGGGAAACAAATGGTTCCTGTTCTCATGCTGAGGCTCCTCCTGGCTCAGTCCCTCCAGGTAACTCTGCCAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 90 bp | GGTTTGCCTATGAGCAACAATTCTCCCCTAAAGCCCTCCTTGCTCTaGATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCT | + |
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Preference number: 1 (lower is better) Translates to: GLPMSNNSPLKPSLL*MEPPQLMTPPAFLA Trigger: AGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGCAAGGAGGGCTTTAGGGGAGAATTGTTGCTCATAGGCAAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 90 bp | GCCCTCCTTGCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTaGTTTTCTAGCTTGGCAATAGATTTTTCTAATGCGGGCAGATCT | + |
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Preference number: 1 (lower is better) Translates to: ALLALHGTTSANDST*FSSLAIDFSNAGRS Trigger: AGATCTGCCCGCATTAGAAAAATCTATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGCAAGGAGGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR CCA 90 bp | AAGTTTTTCCAGAGCATAGCCAAGCTATCTTTAATGGTTCCTGAGTaGTTTGCCTATGAGCAACAATTCTCCCCTAAAGCCCTCCTTGCT | + |
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Preference number: 1 (lower is better) Translates to: KFFQSIAKLSLMVPE*FAYEQQFSPKALLA Trigger: AGCAAGGAGGGCTTTAGGGGAGAATTGTTGCTCATAGGCAAACCACTCAGGAACCATTAAAGATAGCTTGGCTATGCTCTGGAAAAACTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CCA 90 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCACCAGTTTCTGCTGGGTaGGGAAGGAAGGAAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: ALHGTTSANDSTCFSSLAPVSAG*GRKEGR Trigger: CCTTCCTTCCTTCCTTCCCCACCCAGCAGAAACTGG...TGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAGGAGCCAGTTTCTGCTaGGTGGGGAAGGAAGGAAGG | + |
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Preference number: 2 (lower is better) Translates to: LHGTTSANDSTCFSSLAIGASFC*VGKEGR Trigger: CCTTCCTTCCTTCCCCACCCAGCAGAAACTGGCTCC...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR TCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAGGAGGGAGGAGCACTTaGCAAAGTGTTGCGAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: LHGTTSANDSTCFSSLAIGGRST*QSVARN Trigger: GTTCCTCGCAACACTTTGTCAAGTGCTCCTCCCTCC...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR CAA 90 bp | CTGAGTGGTTTGCCTATGAGCAACAATTCTCCCCTAAAGCCCTCCTaGCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTT | + |
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Preference number: 2 (lower is better) Translates to: LSGLPMSNNSPLKPS*LCMEPPQLMTPPAF Trigger: AAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGCAAGGAGGGCTTTAGGGGAGAATTGTTGCTCATAGGCAAACCACTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAACATGTCATCAGTACTaGGGAGCCAGTTTCTGCTGG | + |
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Preference number: 2 (lower is better) Translates to: LHGTTSANDSTCFSSLAITCHQY*GASFCW Trigger: CCAGCAGAAACTGGCTCCCCAGTACTGATGACATGT...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR TCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAAGTGTTGCGAGGAACTaGGAAATGTTTATGGAGAGC | + |
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Preference number: 2 (lower is better) Translates to: LHGTTSANDSTCFSSLAISVARN*EMFMES Trigger: GCTCTCCATAAACATTTCTCAGTTCCTCGCAACACT...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR TCA 90 bp | AAGCTATCTTTAATGGTTCCTGAGTGGTTTGCCTATGAGCAACAATTCTCCCCTGGAAAGATACACCCATaGACAACTGGCAAAGGGAGT | + |
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Preference number: 2 (lower is better) Translates to: KLSLMVPEWFAYEQQFSPGKIHP*TTGKGS Trigger: ACTCCCTTTGCCAGTTGTTCATGGGTGTATCTTTCC...AGGGGAGAATTGTTGCTCATAGGCAAACCACTCAGGAACCATTAAAGATAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR GCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAACAAGTACTCTTTCCTaGTGGACCGTCATCATAAAT | + |
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Preference number: 2 (lower is better) Translates to: LHGTTSANDSTCFSSLAITSTLS*WTVIIN Trigger: ATTTATGATGACGGTCCAGCAGGAAAGAGTACTTGT...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGACACCCATGAACAACTaGCAAAGGGAGTGGCCGAAT | + |
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Preference number: 2 (lower is better) Translates to: CCEELRNVYGEPSFILKGTPMNN*QREWPN Trigger: ATTCGGCCACTCCCTTTGCCAGTTGTTCATGGGTGT...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR TCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGGGTGGTAATACAAAGTaGTGTCAGCCAGTGACCTCA | + |
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Preference number: 2 (lower is better) Translates to: CCEELRNVYGEPSFILKGGGNTK*CQPVTS Trigger: TGAGGTCACTGGCTGACATCACTTTGTATTACCACC...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR GCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGGTGAGTCCTACACAGTaGGAGAGTTTTGTAGGGTTC | + |
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Preference number: 2 (lower is better) Translates to: CCEELRNVYGEPSFILKGVSPTQ*ESFVGF Trigger: GAACCCTACAAAACTCTCGCACTGTGTAGGACTCAC...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CCA 90 bp | AAGCTATCTTTAATGGTTCCTGAGTGGTTTGCCTATGAGCAACAATTCTCCCCTATCAGGCATAGCACTTaGGTTAGAAACATTCATGAG | + |
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Preference number: 2 (lower is better) Translates to: KLSLMVPEWFAYEQQFSPIRHST*VRNIHE Trigger: CTCATGAATGTTTCTAACCCAAGTGCTATGCCTGAT...AGGGGAGAATTGTTGCTCATAGGCAAACCACTCAGGAACCATTAAAGATAGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR TCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGTGGATTTGGCCTATGTaGAGAGATTTGATGCTTGAG | + |
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Preference number: 2 (lower is better) Translates to: CCEELRNVYGEPSFILKGWIWPM*RDLMLE Trigger: CTCAAGCATCAAATCTCTTCACATAGGCCAAATCCA...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGGATTTGATGCTTGAGTaGAAAGATACACCCATGAAC | + |
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Preference number: 2 (lower is better) Translates to: CCEELRNVYGEPSFILKGDLMLE*KDTPMN Trigger: GTTCATGGGTGTATCTTTCCACTCAAGCATCAAATC...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | ATGGGTACATGTCATCAGTACTGGGGAGCCAGTTTCTaGTGGGTGGGGAAGGAAGGAAGGAAGGAAGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: MGTCHQYWGASF*WVGKEGRKEGR Trigger: CCTTCCTTCCTTCCTTCCTTCCTTCCCCACCCAGCAGAAACTGGCTCCCCAGTACTGATGACATGTACCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR TCA 72 bp | CATTCTCCCCTGGGGTTGAGTTCTGAGTCAAACCCTTaGCTTGGTGGTGGGTGCCTGTTCATGTTGGGACAA | + |
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Preference number: 3 (lower is better) Translates to: HSPLGLSSESNP*LGGGCLFMLGQ Trigger: TTGTCCCAACATGAACAGGCACCCACCACCAAGTCAAGGGTTTGACTCAGAACTCAACCCCAGGGGAGAATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | AGCCATTGCTGTTCCTGTGGTACCACTAGCAGCTCCTaGCTTACTAACCCTGAGGGGATTAAGCGAGCTATG | + |
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Preference number: 3 (lower is better) Translates to: SHCCSCGTTSSS*LTNPEGIKRAM Trigger: CATAGCTCGCTTAATCCCCTCAGGGTTAGTAAGGCAGGAGCTGCTAGTGGTACCACAGGAACAGCAATGGCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | ATGAGCAACAATTCTCCCCTAAAGCCCTCCTTGCTCTaGATGGAACCACCTCAGCTAATGACTCCACCTGCT | + |
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Preference number: 3 (lower is better) Translates to: MSNNSPLKPSLL*MEPPQLMTPPA Trigger: AGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGCAAGGAGGGCTTTAGGGGAGAATTGTTGCTCAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR TCA 72 bp | CACAGTGTTAATCATTGTCACATTCTCCCCTGGGGTTaGGTTCTGAGTCAAACCCTTGACTTGGTGGTGGGT | + |
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Preference number: 3 (lower is better) Translates to: HSVNHCHILPWG*VLSQTLDLVVG Trigger: ACCCACCACCAAGTCAAGGGTTTGACTCAGAACTCAACCCCAGGGGAGAATGTGACAATGATTAACACTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR TCA 72 bp | AAAGAGGCTTTATTAGATACTGGTCAGGGCCACAGCTaGGACTCGGGATTCTCAAAGTGTGTCACCAGCTAT | + |
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Preference number: 3 (lower is better) Translates to: KEALLDTGQGHS*DSGFSKCVTSY Trigger: ATAGCTGGTGACACACTTTGAGAATCCCGAGTCTCAGCTGTGGCCCTGACCAGTATCTAATAAAGCCTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | AAGAAGAGAGGGAGGGAGGAGCACTTGACAAAGTGTTaGGAGGAACTGAGAAATGTTTATGGAGAGCCTTCA | + |
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Preference number: 3 (lower is better) Translates to: KKRGREEHLTKC*EELRNVYGEPS Trigger: TGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACACTTTGTCAAGTGCTCCTCCCTCCCTCTCTTCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | GAATACCAAGGTACAGAATTCGGGGGCTTGTGCATATaGCAGATAGGCAAGCATGGGTACATGTCATCAGTA | + |
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Preference number: 3 (lower is better) Translates to: EYQGTEFGGLCI*QIGKHGYMSSV Trigger: TACTGATGACATGTACCCATGCTTGCCTATCTGGCATATGCACAAGCCCCCGAATTCTGTACCTTGGTATTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | GGATTGGCAGGGTCTGTGAATACAAGTACTCTTTCCTaGTGGACCGTCATCATAAATACATCTTCAGGGGAA | + |
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Preference number: 3 (lower is better) Translates to: GLAGSVNTSTLS*WTVIINTSSGE Trigger: TTCCCCTGAAGATGTATTTATGATGACGGTCCAGCAGGAAAGAGTACTTGTATTCACAGACCCTGCCAATCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR GCA 72 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTaGTTTTCTAGCTTGGCAATAGATTTTTCTAATGCG | + |
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Preference number: 3 (lower is better) Translates to: ALHGTTSANDST*FSSLAIDFSNA Trigger: CGCATTAGAAAAATCTATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR CCA 72 bp | TTGATGCTTGAGTGGAAAGATACACCCATGAACAACTaGCAAAGGGAGTGGCCGAATGAGCTTCTAGTATAC | + |
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Preference number: 3 (lower is better) Translates to: LMLEWKDTPMNN*QREWPNELLVY Trigger: GTATACTAGAAGCTCATTCGGCCACTCCCTTTGCCAGTTGTTCATGGGTGTATCTTTCCACTCAAGCATCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR TCA 72 bp | GGGATTTGTAAAGACAAAACCAACCAGGTTACAGTTTaGGGGATGAGTTATCACATCCCTGCCTACATGCAA | + |
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Preference number: 3 (lower is better) Translates to: GICKDKTNQVTV*GMSYHIPAYMQ Trigger: TTGCATGTAGGCAGGGATGTGATAACTCATCCCTCAAACTGTAACCTGGTTGGTTTTGTCTTTACAAATCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR-3UTR CAA 90 bp | AAGCTATCTTTAATGGTTCCTGAGTGGTTTGCCTATGAGCAACAATTCTCCCCTAGATCTTGGGGTTGTTaGATGTTCTATGGTTTTGAA | + |
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Preference number: 3 (lower is better) Translates to: KLSLMVPEWFAYEQQFSPRSWGC*MFYGFE Trigger: TTCAAAACCATAGAACATCAAACAACCCCAAGATCT...AGGGGAGAATTGTTGCTCATAGGCAAACCACTCAGGAACCATTAAAGATAGCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR TCA 90 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCACTGGGCCAAGTACTATaGTATTTGCAGCCCCAGTGT | + |
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Preference number: 4 (lower is better) Translates to: ALHGTTSANDSTCFSSLALGQVL*YLQPQC Trigger: ACACTGGGGCTGCAAATATCATAGTACTTGGCCCAG...TGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR CAA 72 bp | TTGCCTATGAGCAACAATTCTCCCCTAAAGCCCTCCTaGCTCTGCATGGAACCACCTCAGCTAATGACTCCA | + |
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Preference number: 4 (lower is better) Translates to: LPMSNNSPLKPS*LCMEPPQLMTP Trigger: TGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGCAAGGAGGGCTTTAGGGGAGAATTGTTGCTCATAGGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR GCA 90 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAAAGTACTATGATATTTaGAGCCCCAGTGTGGACATC | + |
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Preference number: 4 (lower is better) Translates to: ALHGTTSANDSTCFSSLAKYYDI*SPSVDI Trigger: GATGTCCACACTGGGGCTGCAAATATCATAGTACTT...TGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| 3UTR CAA 72 bp | AAAGAAGAGAGGGAGGGAGGAGCACTTGACAAAGTGTaGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTC | + |
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Preference number: 4 (lower is better) Translates to: KEEREGGALDKV*RGTEKCLWRAF Trigger: GAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACACTTTGTCAAGTGCTCCTCCCTCCCTCTCTTCTTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CCA 90 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCATGTTCTGATTTTCTATaGCAATTACCTGGAACTTCC | + |
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Preference number: 4 (lower is better) Translates to: ALHGTTSANDSTCFSSLACSDFL*QLPGTS Trigger: GGAAGTTCCAGGTAATTGCCATAGAAAATCAGAACA...TGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR TCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAGCTATGGTCTTGTTCTaGTTTTCTATGGCAATTACC | + |
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Preference number: 4 (lower is better) Translates to: LHGTTSANDSTCFSSLAIAMVLF*FSMAIT Trigger: GGTAATTGCCATAGAAAATCAGAACAAGACCATAGC...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CCA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATATGTATACATTTCCCTTaGCAGGTGTCCCTTATATCA | + |
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Preference number: 4 (lower is better) Translates to: LHGTTSANDSTCFSSLAICIHFP*QVSLIS Trigger: TGATATAAGGGACACCTGCCAAGGGAAATGTATACA...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGCGAGTTGAGTCTGGATaGCCTTTCTCCTCCCCATCT | + |
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Preference number: 4 (lower is better) Translates to: CCEELRNVYGEPSFILKGRVESG*PFSSPS Trigger: AGATGGGGAGGAGAAAGGCCATCCAGACTCAACTCG...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CCA 90 bp | TGTTGCGAGGAACTGAGAAATGTTTATGGAGAGCCTTCATTTATTCTTAAAGGGTTTCTCCTCCCCATCTaGGCCAAGTACTATGATATT | + |
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Preference number: 4 (lower is better) Translates to: CCEELRNVYGEPSFILKGFLLPI*AKYYDI Trigger: AATATCATAGTACTTGGCCCAGATGGGGAGGAGAAA...CCCTTTAAGAATAAATGAAGGCTCTCCATAAACATTTCTCAGTTCCTCGCAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CAA 90 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCATGCCAATCAACCGAGTaGAGTCTGGATGGCCTTTCT | + |
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Preference number: 5 (lower is better) Translates to: ALHGTTSANDSTCFSSLACQSTE*SLDGLS Trigger: AGAAAGGCCATCCAGACTCAACTCGGTTGATTGGCA...TGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CAA 90 bp | GCTCTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAGAGAACCTTGGGGTTTaGAAATTAGATTCGAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: ALHGTTSANDSTCFSSLAENLGV*KLDSRK Trigger: TTTCCTCGAATCTAATTTCAAAACCCCAAGGTTCTC...TGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAGAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CAA 90 bp | CTGCATGGAACCACCTCAGCTAATGACTCCACCTGCTTTTCTAGCTTGGCAATAATGTATACATTTCCCTaGGCAGGTGTCCCTTATATC | + |
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Preference number: 5 (lower is better) Translates to: LHGTTSANDSTCFSSLAIMYTFP*AGVPYI Trigger: GATATAAGGGACACCTGCCAAGGGAAATGTATACAT...TATTGCCAAGCTAGAAAAGCAGGTGGAGTCATTAGCTGAGGTGGTTCCATGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS-3UTR CAA 90 bp | AAGCTATCTTTAATGGTTCCTGAGTGGTTTGCCTATGAGCAACAATTCTCCCCTGACATCCTCCATAATTaGGGTCCTTACAGTCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: KLSLMVPEWFAYEQQFSPDILHN*GPYSLS Trigger: GCTCAGACTGTAAGGACCCAAATTATGGAGGATGTC...AGGGGAGAATTGTTGCTCATAGGCAAACCACTCAGGAACCATTAAAGATAGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS CAA 90 bp | GGGTCAGGGATCGAATACATGACCTTAGTATGCCAATCAACCGAGTaGAGTCTGGATGGCCTTTCTCCTCCCCATCTGGGCCAAGTACTA | + |
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Preference number: 6 (lower is better) Translates to: GSGIEYMTLVCQSTE*SLDGLSPPHLGQVL Trigger: TAGTACTTGGCCCAGATGGGGAGGAGAAAGGCCATCCAGACTCAACTCGGTTGATTGGCATACTAAGGTCATGTATTCGATCCCTGACCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS CAA 72 bp | ATCGAATACATGACCTTAGTATGCCAATCAACCGAGTaGAGTCTGGATGGCCTTTCTCCTCCCCATCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: IEYMTLVCQSTE*SLDGLSPPHLG Trigger: GCCCAGATGGGGAGGAGAAAGGCCATCCAGACTCAACTCGGTTGATTGGCATACTAAGGTCATGTATTCGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS GCA 72 bp | GTTCTGATTTTCTATGGCAATTACCTGGAACTTCCATaGCTTAGGGGATGGTCTGGTCTGTTTAGGACCCTG | + |
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Preference number: 6 (lower is better) Translates to: VLIFYGNYLELP*LRGWSGLFRTL Trigger: CAGGGTCCTAAACAGACCAGACCATCCCCTAAGGCATGGAAGTTCCAGGTAATTGCCATAGAAAATCAGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS TCA 72 bp | GTCACCAGACAGAAGGTAGAGGCTATGGTCTTGTTCTaGTTTTCTATGGCAATTACCTGGAACTTCCATGCC | + |
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Preference number: 6 (lower is better) Translates to: VTRQKVEAMVLF*FSMAITWNFHA Trigger: GGCATGGAAGTTCCAGGTAATTGCCATAGAAAATCAGAACAAGACCATAGCCTCTACCTTCTGTCTGGTGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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| CDS CAA 72 bp | GATATTTGCAGCCCCAGTGTGGACATCCTCCATAATTaGGGTCCTTACAGTCTGAGCGAGTTTGCTCATATA | + |
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Preference number: 6 (lower is better) Translates to: DICSPSVDILHN*GPYSLSEFAHI Trigger: TATATGAGCAAACTCGCTCAGACTGTAAGGACCCAAATTATGGAGGATGTCCACACTGGGGCTGCAAATATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040941.3 |
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