Pregenerated sensors for ERO1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021831Ensembl transcript IDs: ENSMUST00000022378.9, ENSMUST00000227315.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TTTGGCTTAGGACAGTCATTGCAACCATGGTGCTCAGAGAGATTCTaGCCTTCAGATTCCCCTGTGCAGAAACAGGCACATTCCAACCGT | + |
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Preference number: 1 (lower is better) Translates to: FGLGQSLQPWCSERF*PSDSPVQKQAHSNR Trigger: ACGGTTGGAATGTGCCTGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGCAATGACTGTCCTAAGCCAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR TCA 90 bp | AGGAGGGTCTTGGATATCAAGCAGAGACTCTCACCAAAAAGCTCATaGAACTTGCCAGCAGGAATTAGGCTGAAGGTTTCTAGAAAGCCC | + |
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Preference number: 1 (lower is better) Translates to: RRVLDIKQRLSPKSS*NLPAGIRLKVSRKP Trigger: GGGCTTTCTAGAAACCTTCAGCCTAATTCCTGCTGGCAAGTTTCATGAGCTTTTTGGTGAGAGTCTCTGCTTGATATCCAAGACCCTCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR TCA 90 bp | GGCAGCCAAGTGAGCACAGCAGAGAGACAGACTGAGAAGCTAAAATaGGATTACTGCATTGAAATTACTCAAAAGTACGGTCCAGTGACT | + |
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Preference number: 1 (lower is better) Translates to: GSQVSTAERQTEKLK*DYCIEITQKYGPVT Trigger: AGTCACTGGACCGTACTTTTGAGTAATTTCAATGCAGTAATCTCATTTTAGCTTCTCAGTCTGTCTCTCTGCTGTGCTCACTTGGCTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CCA 90 bp | TTTAACACTCTTATCAGAACAGTGGCAAACACAAGAGGAGGGTCTTaGATATCAAGCAGAGACTCTCACCAAAAAGCTCATGAAACTTGC | + |
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Preference number: 1 (lower is better) Translates to: FNTLIRTVANTRGGS*ISSRDSHQKAHETC Trigger: GCAAGTTTCATGAGCTTTTTGGTGAGAGTCTCTGCTTGATATCCAAGACCCTCCTCTTGTGTTTGCCACTGTTCTGATAAGAGTGTTAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CCA 90 bp | GACAATGTATCTCTTCTTTTACAAAAGCAGCTTTATATAAACGTTTaGCTTAGGACAGTCATTGCAACCATGGTGCTCAGAGAGATTCTG | + |
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Preference number: 1 (lower is better) Translates to: DNVSLLLQKQLYINV*LRTVIATMVLREIL Trigger: CAGAATCTCTCTGAGCACCATGGTTGCAATGACTGTCCTAAGCCAAACGTTTATATAAAGCTGCTTTTGTAAAAGAAGAGATACATTGTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCAATTCAAACGTCAGGTaGCTGGGATGTGGGATGTCT | + |
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Preference number: 2 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVNSNVR*LGCGMS Trigger: AGACATCCCACATCCCAGCCACCTGACGTTTGAATT...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CCA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCCAAATGAAAAAGCATTaGTATCTGAGGCTGATAACC | + |
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Preference number: 2 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVQMKKH*YLRLIT Trigger: GGTTATCAGCCTCAGATACCAATGCTTTTTCATTTG...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR TCA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTCAGCAGGAATTAGGCTaGAGGTTTCTAGAAAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: KGSEGTCSQNSCHVKQFIQQELG*RFLESP Trigger: TGGGCTTTCTAGAAACCTTCAGCCTAATTCCTGCTG...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CCA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTGGGTTTCAAAAGGGCTaGCTTGTGTGTGGTGATCAT | + |
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Preference number: 2 (lower is better) Translates to: KGSEGTCSQNSCHVKQFIGFQKG*LVCGDH Trigger: ATGATCACCACACACAAGCCAGCCCTTTTGAAACCC...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CCA 90 bp | CTCGCAGACTTAATTCCATCAGGAACTTCATCAGAATGGCAGGGTTTGACGGCATCTCTTCTTCCACACTaGTTGATGTCATTCCAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LADLIPSGTSSEWQGLTASLLPH*LMSFQK Trigger: TTTCTGGAATGACATCAACCAGTGTGGAAGAAGAGA...TGCCGTCAAACCCTGCCATTCTGATGAAGTTCCTGATGGAATTAAGTCTGCGAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227315.2 |
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| 3UTR-3UTR CCA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTGTATTAGACTTCACTTaGAGGGACAGAGGACATAGC | + |
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Preference number: 2 (lower is better) Translates to: KGSEGTCSQNSCHVKQFIVLDFT*RDRGHS Trigger: GCTATGTCCTCTGTCCCTCCAAGTGAAGTCTAATAC...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR GCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCTGCTCAGAGAGATTCTaGCCTTCAGATTCCCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCCSERF*PSDSPV Trigger: CACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCA...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCGTGTTTGCAAAGGTTTaGAAGGCCAACAACTCTGGA | + |
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Preference number: 2 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCVFAKV*KANNSG Trigger: TCCAGAGTTGTTGGCCTTCCAAACCTTTGCAAACAC...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 90 bp | AATACTGTGTTTGCAAAGGTTTGGAAGGCCAACAACTCTGGACTTTaGGAAAACGTTTTAACACTCTTATCAGAACAGTGGCAAACACAA | + |
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Preference number: 2 (lower is better) Translates to: NTVFAKVWKANNSGL*ENVLTLLSEQWQTQ Trigger: TTGTGTTTGCCACTGTTCTGATAAGAGTGTTAAAACGTTTTCCAAAAGTCCAGAGTTGTTGGCCTTCCAAACCTTTGCAAACACAGTATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR GCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCAGCCACATCAAATACTaGTCTCAGTGTAGAGCTTCT | + |
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Preference number: 2 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCSHIKY*SQCRAS Trigger: AGAAGCTCTACACTGAGAGCAGTATTTGATGTGGCT...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR GCA 90 bp | AAAATGCATGGAATTTCCCAGATGAGAAAGAAGCCTAGGGCTCTCAATGCAAATTACATACGTAAGTCCTaGTTTTTCTTATGTGACATC | + |
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Preference number: 2 (lower is better) Translates to: KMHGISQMRKKPRALNANYIRKS*FFLCDI Trigger: GATGTCACATAAGAAAAAGCAGGACTTACGTATGTA...ATTTGCATTGAGAGCCCTAGGCTTCTTTCTCATCTGGGAAATTCCATGCATTTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR TCA 72 bp | ACACAGCTCATGAATGCAGGGCTAGCCCAGCATGACTaGGGTCCTGGGCTCAATCGCCACTCTGAGCTGGGG | + |
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Preference number: 3 (lower is better) Translates to: TQLMNAGLAQHD*GPGLNRHSELG Trigger: CCCCAGCTCAGAGTGGCGATTGAGCCCAGGACCTCAGTCATGCTGGGCTAGCCCTGCATTCATGAGCTGTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CAA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCGGCTTAGGACAGTCATaGCAACCATGGTGCTCAGAG | + |
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Preference number: 3 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVGLGQS*QPWCSE Trigger: CTCTGAGCACCATGGTTGCAATGACTGTCCTAAGCC...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR GCA 72 bp | GGACAGTCATTGCAACCATGGTGCTCAGAGAGATTCTaGCCTTCAGATTCCCCTGTGCAGAAACAGGCACAT | + |
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Preference number: 3 (lower is better) Translates to: GQSLQPWCSERF*PSDSPVQKQAH Trigger: ATGTGCCTGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGCAATGACTGTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CCA 72 bp | TGGCAGGGTTTGACGGCACAGTCTCTTCTTCCACACTaGTTGATGTCATTCCAGAAAGGACAAGGCTTCTTC | + |
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Preference number: 3 (lower is better) Translates to: WQGLTAQSLLPH*LMSFQKGQGFF Trigger: GAAGAAGCCTTGTCCTTTCTGGAATGACATCAACCAGTGTGGAAGAAGAGACTGTGCCGTCAAACCCTGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227315.2 |
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| 3UTR CCA 72 bp | ACAGGTCGAAAAAGGCAACCAAATTCAAACGTCAGGTaGCTGGGATGTGGGATGTCTCCTTATTTTAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: TGRKRQPNSNVR*LGCGMSPYFKA Trigger: AGCCTTAAAATAAGGAGACATCCCACATCCCAGCCACCTGACGTTTGAATTTGGTTGCCTTTTTCGACCTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CCA 72 bp | CTTATCAGAACAGTGGCAAACACAAGAGGAGGGTCTTaGATATCAAGCAGAGACTCTCACCAAAAAGCTCAT | + |
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Preference number: 3 (lower is better) Translates to: LIRTVANTRGGS*ISSRDSHQKAH Trigger: ATGAGCTTTTTGGTGAGAGTCTCTGCTTGATATCCAAGACCCTCCTCTTGTGTTTGCCACTGTTCTGATAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CAA 90 bp | AAAATGCATGGAATTTCCCAGATGAGAAAGAAGCCTAGGGCTCTCAATGCAAATCAGTGTATTTTAAGGTaGCCAGGAAAACACAGGGCT | + |
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Preference number: 3 (lower is better) Translates to: KMHGISQMRKKPRALNANQCILR*PGKHRA Trigger: AGCCCTGTGTTTTCCTGGCAACCTTAAAATACACTG...ATTTGCATTGAGAGCCCTAGGCTTCTTTCTCATCTGGGAAATTCCATGCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CAA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTACACTGATAGAAATGTaGAGAGAAAATCGGCAGAGC | + |
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Preference number: 3 (lower is better) Translates to: KGSEGTCSQNSCHVKQFITLIEM*RENRQS Trigger: GCTCTGCCGATTTTCTCTCAACATTTCTATCAGTGT...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CAA 90 bp | TTATTGACCACCACACTGAAGTATTTTGGGTTAAATCATGAGGCCCATGACTCAGCAAATGAAAAAGCATaGGTATCTGAGGCTGATAAC | + |
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Preference number: 3 (lower is better) Translates to: LLTTTLKYFGLNHEAHDSANEKA*VSEADN Trigger: GTTATCAGCCTCAGATACCAATGCTTTTTCATTTGC...TGAGTCATGGGCCTCATGATTTAACCCAAAATACTTCAGTGTGGTGGTCAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CAA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTTCAACACACTTAACATaGAAAGGAAAACTGGTTGCT | + |
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Preference number: 3 (lower is better) Translates to: KGSEGTCSQNSCHVKQFISTHLT*KGKLVA Trigger: AGCAACCAGTTTTCCTTTCAATGTTAAGTGTGTTGA...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR TCA 72 bp | GTGAGCACAGCAGAGAGACAGACTGAGAAGCTAAAATaGGATTACTGCATTGAAATTACTCAAAAGTACGGT | + |
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Preference number: 3 (lower is better) Translates to: VSTAERQTEKLK*DYCIEITQKYG Trigger: ACCGTACTTTTGAGTAATTTCAATGCAGTAATCTCATTTTAGCTTCTCAGTCTGTCTCTCTGCTGTGCTCAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR-3UTR CAA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCAACAACTCTGGACTTTaGGAAAACGTTTTAACACTC | + |
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Preference number: 3 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCNNSGL*ENVLTL Trigger: GAGTGTTAAAACGTTTTCCAAAAGTCCAGAGTTGTT...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | TTCATACCAGTGTATTTTAAGGTTGCCAGGAAAACACAGGGCTCCCAGTTAAACGCAGAAGCAGCGCTGTaGCGCTGTCTCCGGCCGCCG | + |
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Preference number: 4 (lower is better) Translates to: FIPVYFKVARKTQGSQLNAEAAL*RCLRPP Trigger: CGGCGGCCGGAGACAGCGGCACAGCGCTGCTTCTGC...GTTTAACTGGGAGCCCTGTGTTTTCCTGGCAACCTTAAAATACACTGGTATGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCCCCAGCCCCTGCGTCTaGAGCTTGCCCCACAGGCGG | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCPSPCV*SLPHRR Trigger: CCGCCTGTGGGGCAAGCTTCAGACGCAGGGGCTGGG...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | GCAACCATGGTGCTCAGAGAGATTCTGCCCTTCAGATTCCCCTGTGCAGAAACAGGAACTTCATCAGAATaGCAGGGTTTGACGGCACAG | + |
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Preference number: 4 (lower is better) Translates to: ATMVLREILPFRFPCAETGTSSE*QGLTAQ Trigger: CTGTGCCGTCAAACCCTGCCATTCTGATGAAGTTCC...TGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCGAACTTTATTCCCAGTaGAGAGCTGAAAATCTGGAC | + |
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Preference number: 4 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVELYSQ*RAENLD Trigger: GTCCAGATTTTCAGCTCTTCACTGGGAATAAAGTTC...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | AAAATGCATGGAATTTCCCAGATGAGAAAGAAGCCTAGGGCTCTCAATGCAAATCCCACAGGCGGCACTTaGAGCAGCCAACACAGTCCA | + |
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Preference number: 4 (lower is better) Translates to: KMHGISQMRKKPRALNANPTGGT*SSQHSP Trigger: TGGACTGTGTTGGCTGCTTCAAGTGCCGCCTGTGGG...ATTTGCATTGAGAGCCCTAGGCTTCTTTCTCATCTGGGAAATTCCATGCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | GCAACCATGGTGCTCAGAGAGATTCTGCCCTTCAGATTCCCCTGTGCAGAAACAGCTCACATTCTTCAATaGGGTTGGCTTCCTCAGAAT | + |
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Preference number: 4 (lower is better) Translates to: ATMVLREILPFRFPCAETAHILQ*GWLPQN Trigger: ATTCTGAGGAAGCCAACCGCATTGAAGAATGTGAGC...TGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCGCTTTCCGGCATATTTaGGATCAGTTTTTCGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVAFRHI*DQFFGK Trigger: TTTTCCGAAAAACTGATCGCAAATATGCCGGAAAGC...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCTCTCTTCTTCCACACTaGTTGATGTCATTCCAGAAA | + |
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Preference number: 4 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVSLLPH*LMSFQK Trigger: TTTCTGGAATGACATCAACCAGTGTGGAAGAAGAGA...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | AAAATGCATGGAATTTCCCAGATGAGAAAGAAGCCTAGGGCTCTCAATGCAAATGTTCCTCAGCCTTCGTaGGCCTTCTCCTTCAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: KMHGISQMRKKPRALNANVPQPS*AFSFSQ Trigger: CTGACTGAAGGAGAAGGCCCACGAAGGCTGAGGAAC...ATTTGCATTGAGAGCCCTAGGCTTCTTTCTCATCTGGGAAATTCCATGCATTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTTCATGCTTGGTCCACTaGAGTACAGCTTTCTGGGTC | + |
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Preference number: 4 (lower is better) Translates to: KGSEGTCSQNSCHVKQFISCLVH*STAFWV Trigger: GACCCAGAAAGCTGTACTTCAGTGGACCAAGCATGA...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | TTCATACCAGTGTATTTTAAGGTTGCCAGGAAAACACAGGGCTCCCAGTTAAACCCAAGTCGCTCAGCTTaGTCACATTCTTCAATGCGG | + |
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Preference number: 4 (lower is better) Translates to: FIPVYFKVARKTQGSQLNPSRSA*SHSSMR Trigger: CCGCATTGAAGAATGTGAGCAAGCTGAGCGACTTGG...GTTTAACTGGGAGCCCTGTGTTTTCCTGGCAACCTTAAAATACACTGGTATGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 72 bp | TTAATTCCATCAGGAACTTCATCAGAATGGCAGGGTTaGACGGCACAGTCTCTTCTTCCACACTGGTTGATG | + |
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Preference number: 4 (lower is better) Translates to: LIPSGTSSEWQG*TAQSLLPHWLM Trigger: CATCAACCAGTGTGGAAGAAGAGACTGTGCCGTCAAACCCTGCCATTCTGATGAAGTTCCTGATGGAATTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227315.2 |
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| CDS-3UTR GCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCAGATCTTCAGAGCAGTaGCCAGCCCCTGCGTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCRSSEQ*PAPASE Trigger: TTCAGACGCAGGGGCTGGGCACTGCTCTGAAGATCT...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 72 bp | TCTTATCAGAACAGTGGCAAACACAAGAGGAGGGTCTaGGATATCAAGCAGAGACTCTCACCAAAAAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: SYQNSGKHKRRV*DIKQRLSPKSS Trigger: TGAGCTTTTTGGTGAGAGTCTCTGCTTGATATCCAAGACCCTCCTCTTGTGTTTGCCACTGTTCTGATAAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 72 bp | GAAAGAAGCCTAGGGCTCTCAATGCAAATACTGTGTTaGCAAAGGTTTGGAAGGCCAACAACTCTGGACTTT | + |
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Preference number: 4 (lower is better) Translates to: ERSLGLSMQILC*QRFGRPTTLDF Trigger: AAAGTCCAGAGTTGTTGGCCTTCCAAACCTTTGCAAACACAGTATTTGCATTGAGAGCCCTAGGCTTCTTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | CTACTAACAACCCATCCTATCTACGTTACAGCTCCATCCTGTGGAGAAAAACAGGAAGCCAAAGGCCTTTaGATTGTCTGTGGCTTAAAA | + |
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Preference number: 4 (lower is better) Translates to: LLTTHPIYVTAPSCGEKQEAKGL*IVCGLK Trigger: TTTTAAGCCACAGACAATTCAAAGGCCTTTGGCTTC...CTGTTTTTCTCCACAGGATGGAGCTGTAACGTAGATAGGATGGGTTGTTAGTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | TTCATACCAGTGTATTTTAAGGTTGCCAGGAAAACACAGGGCTCCCAGTTAAACTACCTTGCACTCAAATaGACATTAATGCTTGCGTGC | + |
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Preference number: 4 (lower is better) Translates to: FIPVYFKVARKTQGSQLNYLALK*TLMLAC Trigger: GCACGCAAGCATTAATGTGCATTTGAGTGCAAGGTA...GTTTAACTGGGAGCCCTGTGTTTTCCTGGCAACCTTAAAATACACTGGTATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCTTCGCAGAAGCTGTCTaGCGAATCATCATGCTTGGT | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCFAEAV*RIIMLG Trigger: ACCAAGCATGATGATTCGTCAGACAGCTTCTGCGAA...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | AAAATGCATGGAATTTCCCAGATGAGAAAGAAGCCTAGGGCTCTCAATGCAAATACATTAATGCTTGCGTaGAGGCCAGATATAAGTCTG | + |
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Preference number: 4 (lower is better) Translates to: KMHGISQMRKKPRALNANTLMLA*RPDISL Trigger: CAGACTTATATCTGGCCTGCACGCAAGCATTAATGT...ATTTGCATTGAGAGCCCTAGGCTTCTTTCTCATCTGGGAAATTCCATGCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR GCA 90 bp | AAAATGCATGGAATTTCCCAGATGAGAAAGAAGCCTAGGGCTCTCAATGCAAATATGCACATTAATGCTTaGGTGCAGGCCAGATATAAG | + |
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Preference number: 4 (lower is better) Translates to: KMHGISQMRKKPRALNANMHINA*VQARYK Trigger: CTTATATCTGGCCTGCACGCAAGCATTAATGTGCAT...ATTTGCATTGAGAGCCCTAGGCTTCTTTCTCATCTGGGAAATTCCATGCATTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTAAAATGGAAGCACTTTaGAGAGAGCCCTTAACTCTA | + |
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Preference number: 4 (lower is better) Translates to: KGSEGTCSQNSCHVKQFIKMEAL*REPLTL Trigger: TAGAGTTAAGGGCTCTCTCCAAAGTGCTTCCATTTT...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | TTATTGACCACCACACTGAAGTATTTTGGGTTAAATCATGAGGCCCATGACTCATTGTTTTCTGCATCCTaGACTTTATTCCCAGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: LLTTTLKYFGLNHEAHDSLFSAS*TLFPVK Trigger: CTTCACTGGGAATAAAGTTCAGGATGCAGAAAACAA...TGAGTCATGGGCCTCATGATTTAACCCAAAATACTTCAGTGTGGTGGTCAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 72 bp | AAGGTTGCCAGGAAAACACAGGGCTCCCAGTTAAACTaGAACTTCGAGCAAATAACTTGTAGTATAAATAGG | + |
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Preference number: 4 (lower is better) Translates to: KVARKTQGSQLN*NFEQITCSINR Trigger: CCTATTTATACTACAAGTTATTTGCTCGAAGTTCAAGTTTAACTGGGAGCCCTGTGTTTTCCTGGCAACCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 72 bp | TTTGCAAAGGTTTGGAAGGCCAACAACTCTGGACTTTaGGAAAACGTTTTAACACTCTTATCAGAACAGTGG | + |
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Preference number: 4 (lower is better) Translates to: FAKVWKANNSGL*ENVLTLLSEQW Trigger: CCACTGTTCTGATAAGAGTGTTAAAACGTTTTCCAAAAGTCCAGAGTTGTTGGCCTTCCAAACCTTTGCAAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCTCTGTAACAAGTGCCTaGAGTTCTCTAGTTCTCTCA | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCSVTSA*SSLVLS Trigger: TGAGAGAACTAGAGAACTTCAGGCACTTGTTACAGA...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTCCTTTGAATTGTCTGTaGCTTAAAACAGTTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: KGSEGTCSQNSCHVKQFIPLNCL*LKTVFF Trigger: GAAGAAAACTGTTTTAAGCCACAGACAATTCAAAGG...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCATTCTTCAATGCGGTTaGCTTCCTCAGAATACTTGT | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCILQCG*LPQNTC Trigger: ACAAGTATTCTGAGGAAGCCAACCGCATTGAAGAAT...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR TCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCGCAAAGGAAATGACTTaGTTTCATGAAGTATCTCCA | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCAKEMT*FHEVSP Trigger: TGGAGATACTTCATGAAATCAAGTCATTTCCTTTGC...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CCA 90 bp | ATGTGCCAAACATTATGCTATAGAGGTGCCAAAATGAATAGTTTCTTTTCCTGCATACTATTTCTTGTCTaGTTAGCTGGAACTCATAAC | + |
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Preference number: 4 (lower is better) Translates to: MCQTLCYRGAKMNSFFSCILFLV*LAGTHN Trigger: GTTATGAGTTCCAGCTAACCAGACAAGAAATAGTAT...GCAGGAAAAGAAACTATTCATTTTGGCACCTCTATAGCATAATGTTTGGCACAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| 3UTR CAA 72 bp | TGTATTTTCTTTGTATATGAGGCAAATGAAAAAGCATaGGTATCTGAGGCTGATAACCATGGTTTACTGCTG | + |
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Preference number: 4 (lower is better) Translates to: CIFFVYEANEKA*VSEADNHGLLL Trigger: CAGCAGTAAACCATGGTTATCAGCCTCAGATACCAATGCTTTTTCATTTGCCTCATATACAAAGAAAATACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS CCA 90 bp | CAGAAGCAGCGCTGTGCCGCTGTCTCCGGCCGCCGCTCCTCGCCGTaGCCCAAGCGCAGCAGCCACACGACGCCCAGGAGTCCAACGAGC | + |
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Preference number: 5 (lower is better) Translates to: QKQRCAAVSGRRSSP*PKRSSHTTPRSPTS Trigger: GCTCGTTGGACTCCTGGGCGTCGTGTGGCTGCTGCGCTTGGGCCACGGCGAGGAGCGGCGGCCGGAGACAGCGGCACAGCGCTGCTTCTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | GCAACCATGGTGCTCAGAGAGATTCTGCCCTTCAGATTCCCCTGTGCAGAAACATCAGAATGGCAGGGTTaGACGGCACAGTCTCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: ATMVLREILPFRFPCAETSEWQG*TAQSLL Trigger: AAGAAGAGACTGTGCCGTCAAACCCTGCCATTCTGA...TGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | GCCCAGTCTACTGATCCTCACTGTGCAGCAAAGGCAGTGAAGGTACCTGCAGTCAAAAATGGAAGCACTTaGGAGAGAGCCCTTAACTCT | + |
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Preference number: 5 (lower is better) Translates to: AQSTDPHCAAKAVKVPAVKNGST*ERALNS Trigger: AGAGTTAAGGGCTCTCTCCAAAGTGCTTCCATTTTT...GACTGCAGGTACCTTCACTGCCTTTGCTGCACAGTGAGGATCAGTAGACTGGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | GCAACCATGGTGCTCAGAGAGATTCTGCCCTTCAGATTCCCCTGTGCAGAAACACTTCTTCCACACTGGTaGATGTCATTCCAGAAAGGA | + |
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Preference number: 5 (lower is better) Translates to: ATMVLREILPFRFPCAETLLPHW*MSFQKG Trigger: TCCTTTCTGGAATGACATCAACCAGTGTGGAAGAAG...TGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS CCA 90 bp | TCATCAGAATGGCAGGGTTTGACGGCACAGTCTCTTCTTCCACACTaGTTGATGTCATTCCAGAAAGGACAAGGCTTCTTCAAGTTCACC | + |
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Preference number: 5 (lower is better) Translates to: SSEWQGLTAQSLLPH*LMSFQKGQGFFKFT Trigger: GGTGAACTTGAAGAAGCCTTGTCCTTTCTGGAATGACATCAACCAGTGTGGAAGAAGAGACTGTGCCGTCAAACCCTGCCATTCTGATGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | GCAACCATGGTGCTCAGAGAGATTCTGCCCTTCAGATTCCCCTGTGCAGAAACACTAGTTCTCTCACACTaGTGGAAATCCTTCCAAATG | + |
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Preference number: 5 (lower is better) Translates to: ATMVLREILPFRFPCAETLVLSH*WKSFQM Trigger: CATTTGGAAGGATTTCCACAAGTGTGAGAGAACTAG...TGTTTCTGCACAGGGGAATCTGAAGGGCAGAATCTCTCTGAGCACCATGGTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | AAAGGCAGTGAAGGTACCTGCAGTCAGAACAGCTGTCATGTGAAGCAATTTATTGCTGGAACTCATAACTaGGTCCGCTTTCCGGCATAT | + |
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Preference number: 5 (lower is better) Translates to: KGSEGTCSQNSCHVKQFIAGTHN*VRFPAY Trigger: ATATGCCGGAAAGCGGACCAAGTTATGAGTTCCAGC...AATAAATTGCTTCACATGACAGCTGTTCTGACTGCAGGTACCTTCACTGCCTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | GCTCGCAGACTTAATTCCATCAGGAACTTCATCAGAATGGCAGGGTTTGACGGCGAAGCTTTTGTAGTCTaGGGAAAAGTCTGTAGTTAT | + |
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Preference number: 5 (lower is better) Translates to: ARRLNSIRNFIRMAGFDGEAFVV*GKVCSY Trigger: ATAACTACAGACTTTTCCCAAGACTACAAAAGCTTC...GCCGTCAAACCCTGCCATTCTGATGAAGTTCCTGATGGAATTAAGTCTGCGAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000227315.2 |
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| CDS-3UTR CAA 90 bp | TTATTGACCACCACACTGAAGTATTTTGGGTTAAATCATGAGGCCCATGACTCATCCAAGTCGCTCAGCTaGCTCACATTCTTCAATGCG | + |
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Preference number: 5 (lower is better) Translates to: LLTTTLKYFGLNHEAHDSSKSLS*LTFFNA Trigger: CGCATTGAAGAATGTGAGCAAGCTGAGCGACTTGGA...TGAGTCATGGGCCTCATGATTTAACCCAAAATACTTCAGTGTGGTGGTCAATAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | TTATTGACCACCACACTGAAGTATTTTGGGTTAAATCATGAGGCCCATGACTCACATTCTTCAATGCGGTaGGCTTCCTCAGAATACTTG | + |
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Preference number: 5 (lower is better) Translates to: LLTTTLKYFGLNHEAHDSHSSMR*ASSEYL Trigger: CAAGTATTCTGAGGAAGCCAACCGCATTGAAGAATG...TGAGTCATGGGCCTCATGATTTAACCCAAAATACTTCAGTGTGGTGGTCAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | TTCATACCAGTGTATTTTAAGGTTGCCAGGAAAACACAGGGCTCCCAGTTAAACAGAAGCCAAAGGCCTTaGAATTGTCTGTGGCTTAAA | + |
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Preference number: 5 (lower is better) Translates to: FIPVYFKVARKTQGSQLNRSQRP*NCLWLK Trigger: TTTAAGCCACAGACAATTCAAAGGCCTTTGGCTTCT...GTTTAACTGGGAGCCCTGTGTTTTCCTGGCAACCTTAAAATACACTGGTATGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS-3UTR CAA 90 bp | TTCATACCAGTGTATTTTAAGGTTGCCAGGAAAACACAGGGCTCCCAGTTAAACGAAGCTTTTGTAGTCTaGGGAAAAGTCTGTAGTTAT | + |
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Preference number: 5 (lower is better) Translates to: FIPVYFKVARKTQGSQLNEAFVV*GKVCSY Trigger: ATAACTACAGACTTTTCCCAAGACTACAAAAGCTTC...GTTTAACTGGGAGCCCTGTGTTTTCCTGGCAACCTTAAAATACACTGGTATGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS CCA 72 bp | CGCTGTGCCGCTGTCTCCGGCCGCCGCTCCTCGCCGTaGCCCAAGCGCAGCAGCCACACGACGCCCAGGAGT | + |
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Preference number: 6 (lower is better) Translates to: RCAAVSGRRSSP*PKRSSHTTPRS Trigger: ACTCCTGGGCGTCGTGTGGCTGCTGCGCTTGGGCCACGGCGAGGAGCGGCGGCCGGAGACAGCGGCACAGCG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS GCA 72 bp | GTCCAGGTAACCACTAACCTGGCAGAAGCAGCGCTGTaGCGCTGTCTCCGGCCGCCGCTCCTCGCCGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: VQVTTNLAEAAL*RCLRPPLLAVA Trigger: GGCCACGGCGAGGAGCGGCGGCCGGAGACAGCGGCACAGCGCTGCTTCTGCCAGGTTAGTGGTTACCTGGAC 69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS GCA 72 bp | CAGGTAACCACTAACCCGCCTCCGGTACACCTGGCCTaGAGCTCGTCCGGCGCAAAGACGCGGTCCTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: QVTTNPPPVHLA*SSSGAKTRSFR Trigger: CCGGAAGGACCGCGTCTTTGCGCCGGACGAGCTGCAGGCCAGGTGTACCGGAGGCGGGTTAGTGGTTACCTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227315.2 |
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| CDS GCA 72 bp | CGGCTCCAAGTCGCTCAGCTTGCTCACATTCTTCAATaGGGTTGGCTTCCTCAGAATACTTGTAGCTCGCAG | + |
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Preference number: 6 (lower is better) Translates to: RLQVAQLAHILQ*GWLPQNTCSSQ Trigger: CTGCGAGCTACAAGTATTCTGAGGAAGCCAACCGCATTGAAGAATGTGAGCAAGCTGAGCGACTTGGAGCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS GCA 72 bp | CTCAGAGACTCATCCACGGCTCCAAGTCGCTCAGCTTaGTCACATTCTTCAATGCGGTTGGCTTCCTCAGAA | + |
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Preference number: 6 (lower is better) Translates to: LRDSSTAPSRSA*SHSSMRLASSE Trigger: TTCTGAGGAAGCCAACCGCATTGAAGAATGTGAGCAAGCTGAGCGACTTGGAGCCGTGGATGAGTCTCTGAG 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS CAA 72 bp | ACTCAGAGACTCATCCACGGCTCCAAGTCGCTCAGCTaGCTCACATTCTTCAATGCGGTTGGCTTCCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: TQRLIHGSKSLS*LTFFNAVGFLR Trigger: TCTGAGGAAGCCAACCGCATTGAAGAATGTGAGCAAGCTGAGCGACTTGGAGCCGTGGATGAGTCTCTGAGT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS CAA 90 bp | GGTCTCCTCACTCAGAGACTCATCCACGGCTCCAAGTCGCTCAGCTaGCTCACATTCTTCAATGCGGTTGGCTTCCTCAGAATACTTGTA | + |
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Preference number: 6 (lower is better) Translates to: GLLTQRLIHGSKSLS*LTFFNAVGFLRILV Trigger: TACAAGTATTCTGAGGAAGCCAACCGCATTGAAGAATGTGAGCAAGCTGAGCGACTTGGAGCCGTGGATGAGTCTCTGAGTGAGGAGACC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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| CDS CAA 90 bp | TCAGAATGGCAGGGTTTGACGGCACAGTCTCTTCTTCCACACTGGTaGATGTCATTCCAGAAAGGACAAGGCTTCTTCAAGTTCACCTTG | + |
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Preference number: 6 (lower is better) Translates to: SEWQGLTAQSLLPHW*MSFQKGQGFFKFTL Trigger: CAAGGTGAACTTGAAGAAGCCTTGTCCTTTCTGGAATGACATCAACCAGTGTGGAAGAAGAGACTGTGCCGTCAAACCCTGCCATTCTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000022378.9 |
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