Pregenerated sensors for ERLIN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031483Ensembl transcript IDs: ENSMUST00000033873.9, ENSMUST00000209504.2, ENSMUST00000209520.2, ENSMUST00000209563.2, ENSMUST00000209795.2, ENSMUST00000209976.2, ENSMUST00000211043.2, ENSMUST00000211233.2
Found 112 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGCGCTGGATGGCGGGGTACCCTCCCTCCTGCACCGACTCCACTaGAGTAGTGTTTTCTCAGGTGCACGTACAAGAGAGGATGCTGGG | + |
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Preference number: 1 (lower is better) Translates to: RALDGGVPSLLHRLH*SSVFSGARTREDAG Trigger: CCCAGCATCCTCTCTTGTACGTGCACCTGAGAAAACACTACTTCAGTGGAGTCGGTGCAGGAGGGAGGGTACCCCGCCATCCAGCGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | AGCAGCTGCAGCAGGACTTTACTGTGGCTCTTTGTAATGGAGGGATaGGCTCTCAGAATGCTAGTTACAGAGCCTCTCGGGCTAGGAGGG | + |
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Preference number: 1 (lower is better) Translates to: SSCSRTLLWLFVMEG*ALRMLVTEPLGLGG Trigger: CCCTCCTAGCCCGAGAGGCTCTGTAACTAGCATTCTGAGAGCTCATCCCTCCATTACAAAGAGCCACAGTAAAGTCCTGCTGCAGCTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | GGGGGAGAGGGAGATGGCTCAGAGGTTAAGAGCACTGGCTGCTCTTaGGGAGGACCCTGCTTGATTCCAGCAAACAAGGAACAACTCAAA | + |
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Preference number: 1 (lower is better) Translates to: GGEGDGSEVKSTGCS*GGPCLIPANKEQLK Trigger: TTTGAGTTGTTCCTTGTTTGCTGGAATCAAGCAGGGTCCTCCTCAAGAGCAGCCAGTGCTCTTAACCTCTGAGCCATCTCCCTCTCCCCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | CCTACACTAGAGGCAAGGGAGAGAACTGTGGAGTACACTTTTCCCTaGAGGAATTCAAGCACGAGGAGGCAGCACACACTCTCCCTCTTC | + |
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Preference number: 1 (lower is better) Translates to: PTLEARERTVEYTFP*RNSSTRRQHTLSLF Trigger: GAAGAGGGAGAGTGTGTGCTGCCTCCTCGTGCTTGAATTCCTTCAGGGAAAAGTGTACTCCACAGTTCTCTCCCTTGCCTCTAGTGTAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | TCCCTTTCTCTCATATCTATTCTTCGCATTCTCAGTTTCCTAGGGTaGCTCACTGGAGCCGACTCTCAAGTGGCTGCCTGCTCTCTTCAT | + |
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Preference number: 1 (lower is better) Translates to: SLSLISILRILSFLG*LTGADSQVAACSLH Trigger: ATGAAGAGAGCAGGCAGCCACTTGAGAGTCGGCTCCAGTGAGTCACCCTAGGAAACTGAGAATGCGAAGAATAGATATGAGAGAAAGGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 90 bp | CCGGGAAATCCAATGCCCTCAGCTGGCCTCCATAGGCACCAGGTATaGATGTGGAATACAGACATACATCAGCAAAATACCCTATACTAC | + |
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Preference number: 1 (lower is better) Translates to: PGNPMPSAGLHRHQV*MWNTDIHQQNTLYY Trigger: GTAGTATAGGGTATTTTGCTGATGTATGTCTGTATTCCACATGCATACCTGGTGCCTATGGAGGCCAGCTGAGGGCATTGGATTTCCCGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 90 bp | AAGCTTCGTCTTCTCGCTTTCCATCAGCTCATAGTTCCTGCGGATTaGCTCAGGTATATTGGGCTTTGTCACTCGCACAGCTTGGATAAC | + |
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Preference number: 1 (lower is better) Translates to: KLRLLAFHQLIVPAD*LRYIGLCHSHSLDN Trigger: GTTATCCAAGCTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAATCCGCAGGAACTATGAGCTGATGGAAAGCGAGAAGACGAAGCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
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| 3UTR TCA 90 bp | GCGAGGCAGCTTGCCACAGCCAGTCTGGGAGTTACCTACTTAAACTaGTATTACATGAGGTTAGGGTCAACTGGGAATGCCTTTATCTTC | + |
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Preference number: 1 (lower is better) Translates to: ARQLATASLGVTYLN*YYMRLGSTGNAFIF Trigger: GAAGATAAAGGCATTCCCAGTTGACCCTAACCTCATGTAATATCAGTTTAAGTAGGTAACTCCCAGACTGGCTGTGGCAAGCTGCCTCGC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 90 bp | TGCAGCAATGTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATaGAGACCAGGCTGGGCTCAAACAGATCCTTCTCCTCGGGTGCTG | + |
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Preference number: 1 (lower is better) Translates to: CSNVLILFVFAIVSL*RPGWAQTDPSPRVL Trigger: CAGCACCCGAGGAGAAGGATCTGTTTGAGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACACATTGCTGCA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | TCCCTCTTCATACTGACAGTAGCTCCACTTAAACCAGCTTCAAAGTaGCAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTGCA | + |
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Preference number: 1 (lower is better) Translates to: SLFILTVAPLKPASK*QCWCLQVRGQIYGA Trigger: TGCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCTGGTTTAAGTGGAGCTACTGTCAGTATGAAGAGGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | TGTCATCTGGCTGGGCCCTTCTCCACAGTGTTAAGGGCTCTTCAATaGAGAATCTCCATAATGATAAAGATGTTTGGTCTCAAAAGCATA | + |
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Preference number: 1 (lower is better) Translates to: CHLAGPFSTVLRALQ*RISIMIKMFGLKSI Trigger: TATGCTTTTGAGACCAAACATCTTTATCATTATGGAGATTCTTCATTGAAGAGCCCTTAACACTGTGGAGAAGGGCCCAGCCAGATGACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 90 bp | TTATCTTCTGGAGAAATGCAGCAATGTGTTAATTCTGTTTGTTTTTaGCATAGTCTCACTATGCAGACCAGGCTGGGCTCAAACAGATCC | + |
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Preference number: 1 (lower is better) Translates to: LSSGEMQQCVNSVCF*HSLTMQTRLGSNRS Trigger: GGATCTGTTTGAGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACACATTGCTGCATTTCTCCAGAAGATAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 90 bp | TTCACTGACATTAACATTTATCTAGTGACACTAGGCGAGGCAGCTTaGCACAGCCAGTCTGGGAGTTACCTACTTAAACTGATATTACAT | + |
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Preference number: 1 (lower is better) Translates to: FTDINIYLVTLGEAA*HSQSGSYLLKLILH Trigger: ATGTAATATCAGTTTAAGTAGGTAACTCCCAGACTGGCTGTGGCAAGCTGCCTCGCCTAGTGTCACTAGATAAATGTTAATGTCAGTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 90 bp | AAAGTGACAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTaGATACACCTTCTCAGAAGTCATACAACTTACTTACCTGAATTA | + |
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Preference number: 1 (lower is better) Translates to: KVTMLVSAGQRSNLR*IHLLRSHTTYLPEL Trigger: TAATTCAGGTAAGTAAGTTGTATGACTTCTGAGAAGGTGTATGCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR CCA 90 bp | CAACATTTAGTGAGTGAGAAGCATTCTACCAAGGTGGCTGGGCCTTaGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTAACGTAT | + |
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Preference number: 1 (lower is better) Translates to: QHLVSEKHSTKVAGP*ESPTKTEFYKRLTY Trigger: ATACGTTAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTTGGTAGAATGCTTCTCACTCACTAAATGTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | CTAACAGCACTTGTTTGTTCCCATCTTAACGCTGAGTGCAACTCATaGATAGATTATTCAAGAAGAAATGAAATCACAGATCAGGTCAAA | + |
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Preference number: 1 (lower is better) Translates to: LTALVCSHLNAECNS*IDYSRRNEITDQVK Trigger: TTTGACCTGATCTGTGATTTCATTTCTTCTTGAATAATCTATTCATGAGTTGCACTCAGCGTTAAGATGGGAACAAACAAGTGCTGTTAG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 90 bp | GTTTACACAGAAGTAGAGATAAAAAGGAATGGAAGTACAAACACATaGTTGCCCATTACAGCTTTTATAAGGAAACAAACAGTGGCTAGA | + |
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Preference number: 1 (lower is better) Translates to: VYTEVEIKRNGSTNT*LPITAFIRKQTVAR Trigger: TCTAGCCACTGTTTGTTTCCTTATAAAAGCTGTAATGGGCAATCATGTGTTTGTACTTCCATTCCTTTTTATCTCTACTTCTGTGTAAAC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR TCA 90 bp | GTCTGCAGATTACCTGCAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCACTCAAAGGAGTGTGTGGTGTaGCCAAGCCCTGCTGCGGTG | + |
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Preference number: 2 (lower is better) Translates to: VCRLPAELPSTEAFCVHSKECVV*PSPAAV Trigger: CACCGCAGCAGGGCTTGGTCACACCACACACTCCTT...TGAGTGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | GTCTGCAGATTACCTGCAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCACTCATCTCAAGTGGCTGCCTaGTCTCTTCATCAGTGTCAG | + |
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Preference number: 2 (lower is better) Translates to: VCRLPAELPSTEAFCVHSSQVAA*SLHQCQ Trigger: CTGACACTGATGAAGAGAGCAGGCAGCCACTTGAGA...TGAGTGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR CCA 90 bp | CTTCTGGGCTGCAATGAGAAGCTTCGTCTTCTCGCTTTCCATCAGCTCATAGTTGTCACTCGCACAGCTTaGATAACCAGCCCAGGGGCC | + |
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Preference number: 2 (lower is better) Translates to: LLGCNEKLRLLAFHQLIVVTRTA*ITSPGA Trigger: GGCCCCTGGGCTGGTTATCCAAGCTGTGCGAGTGAC...AACTATGAGCTGATGGAAAGCGAGAAGACGAAGCTTCTCATTGCAGCCCAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
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| 3UTR-3UTR GCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAGATTACCTGCAGAGCTaGCCTCCACAGAGGCATTCT | + |
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Preference number: 2 (lower is better) Translates to: SKLARLTKPKLRWELMPEDYLQS*PPQRHS Trigger: AGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATC...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | GGTGATTTCTGCAACCTGTGCCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCTTTTTCCACCACCTTCTaGTTCTGGGCTGCAATGAGA | + |
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Preference number: 2 (lower is better) Translates to: GDFCNLCHFFCLNEGLLPFSTTF*FWAAMR Trigger: TCTCATTGCAGCCCAGAAGCAGAAGGTGGTGGAAAA...AGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAATCACC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
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| 3UTR-3UTR CCA 90 bp | GTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATGCAGACCAGGCTGGGCTCGGAAAAGGAGTGTGTaGTGTGACCAAGCCCTGCTG | + |
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Preference number: 2 (lower is better) Translates to: VLILFVFAIVSLCRPGWARKRSV*CDQALL Trigger: CAGCAGGGCTTGGTCACACCACACACTCCTTTTCCG...AGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR TCA 90 bp | GTCTGCAGATTACCTGCAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCACTCAGCTGAGTGCAACTCATaGATAGATTATTCAAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: VCRLPAELPSTEAFCVHSAECNS*IDYSRR Trigger: TCTTCTTGAATAATCTATTCATGAGTTGCACTCAGC...TGAGTGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAAAACAACTCTCCATCTaGTCTCCCTTCCCAGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: SKLARLTKPKLRWELMPEKQLSI*SPFPEG Trigger: CCCTTCTGGGAAGGGAGAGCAGATGGAGAGTTGTTT...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | AGACAGCTTAACTCTCAAGTAATCCACTCAGTCAAAAAGCCCAGCCGGCCAACGGACAATGTTGGTGTCTaGAGGTCAGAGGTCAAATCT | + |
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Preference number: 2 (lower is better) Translates to: RQLNSQVIHSVKKPSRPTDNVGV*RSEVKS Trigger: AGATTTGACCTCTGACCTGCAGACACCAACATTGTC...CGTTGGCCGGCTGGGCTTTTTGACTGAGTGGATTACTTGAGAGTTAAGCTGTCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAGGTTGCACAGGGTACTaGCATGTCTGCAGATTACCT | + |
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Preference number: 2 (lower is better) Translates to: SKLARLTKPKLRWELMPEGCTGY*HVCRLP Trigger: AGGTAATCTGCAGACATGGCAGTACCCTGTGCAACC...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTACAGGGAAGGAGCAGCTaGAGCAGGACTTTACTGTGG | + |
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Preference number: 2 (lower is better) Translates to: KVAGPWESPTKTEFYKRLQGRSS*SRTLLW Trigger: CCACAGTAAAGTCCTGCTGCAGCTGCTCCTTCCCTG...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | ATTTCTGCAACCTGTGCCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCTCTCTCTTCTGCTTCTGGGCTaGAATGAGAAGCTTCGTCTT | + |
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Preference number: 2 (lower is better) Translates to: ISATCATFSASMRAFFLSLLLLG*NEKLRL Trigger: AAGACGAAGCTTCTCATTGCAGCCCAGAAGCAGAAG...AGAGAGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
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| 3UTR-3UTR CCA 90 bp | AAATACCTGACAAGTCTGGTGCCACTTAGGAGCAAACTGGCCCGACTTACAAAATCAAGGAAGGTAGTGTaGAAAGGAGGAGCGCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: KYLTSLVPLRSKLARLTKSRKVV*KGGALC Trigger: GCAAAGCGCTCCTCCTTTCCACACTACCTTCCTTGA...TTTTGTAAGTCGGGCCAGTTTGCTCCTAAGTGGCACCAGACTTGTCAGGTATTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR CCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTAGAGCCGACTCTCAAGTaGCTGCCTGCTCTCTTCATC | + |
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Preference number: 2 (lower is better) Translates to: KVAGPWESPTKTEFYKRLEPTLK*LPALFI Trigger: GATGAAGAGAGCAGGCAGCCACTTGAGAGTCGGCTC...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR CCA 90 bp | ATTTCTGCAACCTGTGCCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCTCTCTTTGCCTCAGGTATATTaGGCTTTGTCACTCGCACAG | + |
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Preference number: 2 (lower is better) Translates to: ISATCATFSASMRAFFLSLPQVY*ALSLAQ Trigger: CTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAA...AGAGAGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
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| 3UTR CAA 90 bp | ACAGTAAGAAGAGTCAAGGAAGGTAGTGTGGAAAGGAGGAGCGCTTaGCTCTGTCTCATCTTAAAGAATACAGCTCTCTCTAAGCTGCCC | + |
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Preference number: 2 (lower is better) Translates to: TVRRVKEGSVERRSA*LCLILKNTALSKLP Trigger: GGGCAGCTTAGAGAGAGCTGTATTCTTTAAGATGAGACAGAGCAAAGCGCTCCTCCTTTCCACACTACCTTCCTTGACTCTTCTTACTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR GCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTAGAGCCCCACCCCCAGTaGAATTTCAGGATAAGAAAT | + |
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Preference number: 2 (lower is better) Translates to: KVAGPWESPTKTEFYKRLEPHPQ*NFRIRN Trigger: ATTTCTTATCCTGAAATTGCACTGGGGGTGGGGCTC...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR TCA 90 bp | TTCAGGATAAGAAATCCCTTTCTCTCATATCTATTCTTCGCATTCTCAGTTTCCAAACCAGCTTCAAAGTaGCAATGTTGGTGTCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: FRIRNPFLSYLFFAFSVSKPASK*QCWCLQ Trigger: CTGCAGACACCAACATTGTCACTTTGAAGCTGGTTT...GGAAACTGAGAATGCGAAGAATAGATATGAGAGAAAGGGATTTCTTATCCTGAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR-3UTR TCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTAACTGAATTTATGCTATaGCATGGGGACATTTCTGTT | + |
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Preference number: 2 (lower is better) Translates to: KVAGPWESPTKTEFYKRLTEFML*HGDISV Trigger: AACAGAAATGTCCCCATGTCATAGCATAAATTCAGT...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 72 bp | CTAGGAGGGCGCTGGATGGCGGGGTACCCTCCCTCCTaGACCGACTCCACTGAAGTAGTGTTTTCTCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: LGGRWMAGYPPS*TDSTEVVFSQV Trigger: CACCTGAGAAAACACTACTTCAGTGGAGTCGGTGCAGGAGGGAGGGTACCCCGCCATCCAGCGCCCTCCTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR CCA 72 bp | GACAAAGCCCCAGCACAGGCCACAGGCACTACTACTTaGGTGTCATCTGGCTGGGCCCTTCTCCACAGTGTT | + |
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Preference number: 3 (lower is better) Translates to: DKAPAQATGTTT*VSSGWALLHSV Trigger: AACACTGTGGAGAAGGGCCCAGCCAGATGACACCCAAGTAGTAGTGCCTGTGGCCTGTGCTGGGGCTTTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 72 bp | GATGGCGGGGTACCCTCCCTCCTGCACCGACTCCACTaGAGTAGTGTTTTCTCAGGTGCACGTACAAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: DGGVPSLLHRLH*SSVFSGARTRE Trigger: CTCTCTTGTACGTGCACCTGAGAAAACACTACTTCAGTGGAGTCGGTGCAGGAGGGAGGGTACCCCGCCATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 72 bp | GGAACAACTCAAAACTGCCCCGTCCGGGAAATCCAATaGCCTCAGCTGGCCTCCATAGGCACCAGGTATGCA | + |
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Preference number: 3 (lower is better) Translates to: GTTQNCPVREIQ*PQLASIGTRYA Trigger: TGCATACCTGGTGCCTATGGAGGCCAGCTGAGGGCATTGGATTTCCCGGACGGGGCAGTTTTGAGTTGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 72 bp | TGGTTGCACAGGGTACTGCCATGTCTGCAGATTACCTaGAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCA | + |
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Preference number: 3 (lower is better) Translates to: WLHRVLPCLQIT*RAALHRGILCA Trigger: TGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGACATGGCAGTACCCTGTGCAACCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR CCA 72 bp | CAGGCCACAGGCACTACTACTTGGGTGTCATCTGGCTaGGCCCTTCTCCACAGTGTTAAGGGCTCTTCAATG | + |
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Preference number: 3 (lower is better) Translates to: QATGTTTWVSSG*ALLHSVKGSSM Trigger: CATTGAAGAGCCCTTAACACTGTGGAGAAGGGCCCAGCCAGATGACACCCAAGTAGTAGTGCCTGTGGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR GCA 72 bp | CTGCTTGATTCCAGCAAACAAGGAACAACTCAAAACTaGCCCGTCCGGGAAATCCAATGCCCTCAGCTGGCC | + |
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Preference number: 3 (lower is better) Translates to: LLDSSKQGTTQN*PVREIQCPQLA Trigger: GGCCAGCTGAGGGCATTGGATTTCCCGGACGGGGCAGTTTTGAGTTGTTCCTTGTTTGCTGGAATCAAGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 72 bp | CCTCTTTTTGGGTCGGCTGAATGCTTCCCAAATACCTaGCAAGTCTGGTGCCACTTAGGAGCAAACTGGCCC | + |
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Preference number: 3 (lower is better) Translates to: PLFGSAECFPNT*QVWCHLGANWP Trigger: GGGCCAGTTTGCTCCTAAGTGGCACCAGACTTGTCAGGTATTTGGGAAGCATTCAGCCGACCCAAAAAGAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 72 bp | GGAGATGGCTCAGAGGTTAAGAGCACTGGCTGCTCTTaGGGAGGACCCTGCTTGATTCCAGCAAACAAGGAA | + |
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Preference number: 3 (lower is better) Translates to: GDGSEVKSTGCS*GGPCLIPANKE Trigger: TTCCTTGTTTGCTGGAATCAAGCAGGGTCCTCCTCAAGAGCAGCCAGTGCTCTTAACCTCTGAGCCATCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR CCA 72 bp | AGTAGTCACCTAAGAGAGAACAGTAGGTGCTTTGTGTaGGGGGAGGATGAGGTAGGGGACCAGCTAACAAGG | + |
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Preference number: 3 (lower is better) Translates to: SSHLRENSRCFV*GEDEVGDQLTR Trigger: CCTTGTTAGCTGGTCCCCTACCTCATCCTCCCCCCACACAAAGCACCTACTGTTCTCTCTTAGGTGACTACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| 3UTR TCA 72 bp | CTCATATCTATTCTTCGCATTCTCAGTTTCCTAGGGTaGCTCACTGGAGCCGACTCTCAAGTGGCTGCCTGC | + |
|
Preference number: 3 (lower is better) Translates to: LISILRILSFLG*LTGADSQVAAC Trigger: GCAGGCAGCCACTTGAGAGTCGGCTCCAGTGAGTCACCCTAGGAAACTGAGAATGCGAAGAATAGATATGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | CTTCTCGCTTTCCATCAGCTCATAGTTCCTGCGGATTaGCTCAGGTATATTGGGCTTTGTCACTCGCACAGC | + |
|
Preference number: 3 (lower is better) Translates to: LLAFHQLIVPAD*LRYIGLCHSHS Trigger: GCTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAATCCGCAGGAACTATGAGCTGATGGAAAGCGAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| 3UTR CCA 72 bp | TTTGTTTTTGCCATAGTCTCACTATGCAGACCAGGCTaGGCTCAAACAGATCCTTCTCCTCGGGTGCTGGAG | + |
|
Preference number: 3 (lower is better) Translates to: FVFAIVSLCRPG*AQTDPSPRVLE Trigger: CTCCAGCACCCGAGGAGAAGGATCTGTTTGAGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR-3UTR CAA 90 bp | CTTCTGCTTCTGGGCTGCAATGAGAAGCTTCGTCTTCTCGCTTTCCATCAGCTCATTGCCTCAGGTATATaGGGCTTTGTCACTCGCACA | + |
|
Preference number: 3 (lower is better) Translates to: LLLLGCNEKLRLLAFHQLIASGI*GFVTRT Trigger: TGTGCGAGTGACAAAGCCCAATATACCTGAGGCAAT...GAGCTGATGGAAAGCGAGAAGACGAAGCTTCTCATTGCAGCCCAGAAGCAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| 3UTR TCA 72 bp | TTAAGAGCACTGGCTGCTCTTGAGGAGGACCCTGCTTaGTTCCAGCAAACAAGGAACAACTCAAAACTGCCC | + |
|
Preference number: 3 (lower is better) Translates to: LRALAALEEDPA*FQQTRNNSKLP Trigger: GGGCAGTTTTGAGTTGTTCCTTGTTTGCTGGAATCAAGCAGGGTCCTCCTCAAGAGCAGCCAGTGCTCTTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | GTGCACTCACAGGCCATGGTAGAGCCCCACCCCCAGTaGAATTTCAGGATAAGAAATCCCTTTCTCTCATAT | + |
|
Preference number: 3 (lower is better) Translates to: VHSQAMVEPHPQ*NFRIRNPFLSY Trigger: ATATGAGAGAAAGGGATTTCTTATCCTGAAATTGCACTGGGGGTGGGGCTCTACCATGGCCTGTGAGTGCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | CCAATGCCCTCAGCTGGCCTCCATAGGCACCAGGTATaGATGTGGAATACAGACATACATCAGCAAAATACC | + |
|
Preference number: 3 (lower is better) Translates to: PMPSAGLHRHQV*MWNTDIHQQNT Trigger: GGTATTTTGCTGATGTATGTCTGTATTCCACATGCATACCTGGTGCCTATGGAGGCCAGCTGAGGGCATTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | GCTTCGTCTTCTCGCTTTCCATCAGCTCATAGTTCCTaGGGATTGCCTCAGGTATATTGGGCTTTGTCACTC | + |
|
Preference number: 3 (lower is better) Translates to: ASSSRFPSAHSS*GLPQVYWALSL Trigger: GAGTGACAAAGCCCAATATACCTGAGGCAATCCGCAGGAACTATGAGCTGATGGAAAGCGAGAAGACGAAGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| 3UTR-3UTR CAA 90 bp | GTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATGCAGACCAGGCTGGGCTGAACCCTGCCTCTTTTaGGGTCGGCTGAATGCTTCC | + |
|
Preference number: 3 (lower is better) Translates to: VLILFVFAIVSLCRPGWAEPCLF*GRLNAS Trigger: GGAAGCATTCAGCCGACCCAAAAAGAGGCAGGGTTC...AGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR-3UTR CAA 90 bp | AGCTTCAAAGTGACAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTGCCAGAAGGGGGTAAGTTaGTGTCCATTTCTTCCTTTT | + |
|
Preference number: 3 (lower is better) Translates to: SFKVTMLVSAGQRSNLRCQKGVS*CPFLPF Trigger: AAAAGGAAGAAATGGACACAAACTTACCCCCTTCTG...GCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | ATTAACATTTATCTAGTGACACTAGGCGAGGCAGCTTaGCACAGCCAGTCTGGGAGTTACCTACTTAAACTG | + |
|
Preference number: 3 (lower is better) Translates to: INIYLVTLGEAA*HSQSGSYLLKL Trigger: CAGTTTAAGTAGGTAACTCCCAGACTGGCTGTGGCAAGCTGCCTCGCCTAGTGTCACTAGATAAATGTTAAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR CCA 72 bp | GTGAGTGAGAAGCATTCTACCAAGGTGGCTGGGCCTTaGGAAAGTCCTACAAAAACTGAATTTTACAAACGG | + |
|
Preference number: 3 (lower is better) Translates to: VSEKHSTKVAGP*ESPTKTEFYKR Trigger: CCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTTGGTAGAATGCTTCTCACTCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR TCA 72 bp | ATACTGACAGTAGCTCCACTTAAACCAGCTTCAAAGTaGCAATGTTGGTGTCTGCAGGTCAGAGGTCAAATC | + |
|
Preference number: 3 (lower is better) Translates to: ILTVAPLKPASK*QCWCLQVRGQI Trigger: GATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCTGGTTTAAGTGGAGCTACTGTCAGTAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR TCA 72 bp | GCTGGGCCCTTCTCCACAGTGTTAAGGGCTCTTCAATaGAGAATCTCCATAATGATAAAGATGTTTGGTCTC | + |
|
Preference number: 3 (lower is better) Translates to: AGPFSTVLRALQ*RISIMIKMFGL Trigger: GAGACCAAACATCTTTATCATTATGGAGATTCTTCATTGAAGAGCCCTTAACACTGTGGAGAAGGGCCCAGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | GTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATaGAGACCAGGCTGGGCTCAAACAGATCCTTCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: VLILFVFAIVSL*RPGWAQTDPSP Trigger: AGGAGAAGGATCTGTTTGAGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | ATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTaGATACACCTTCTCAGAAGTCATACAACTTACTTA | + |
|
Preference number: 3 (lower is better) Translates to: MLVSAGQRSNLR*IHLLRSHTTYL Trigger: TAAGTAAGTTGTATGACTTCTGAGAAGGTGTATGCACCGTAGATTTGACCTCTGACCTGCAGACACCAACAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR GCA 72 bp | AAACTGATATTACATGAGGTTAGGGTCAACTGGGAATaGCTTTATCTTCTGGAGAAATGCAGCAATGTGTTA | + |
|
Preference number: 3 (lower is better) Translates to: KLILHEVRVNWE*LYLLEKCSNVL Trigger: TAACACATTGCTGCATTTCTCCAGAAGATAAAGGCATTCCCAGTTGACCCTAACCTCATGTAATATCAGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | CATTCTCAGTTTCCTAGGGTGACTCACTGGAGCCGACTCTCAAGTGGCTGCCTGAACCCGGGCCACTGGTaGAGGTCAGCAGGGCACCAC | + |
|
Preference number: 4 (lower is better) Translates to: HSQFPRVTHWSRLSSGCLNPGHW*RSAGHH Trigger: GTGGTGCCCTGCTGACCTCCACCAGTGGCCCGGGTT...CAGGCAGCCACTTGAGAGTCGGCTCCAGTGAGTCACCCTAGGAAACTGAGAATG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR CAA 72 bp | AGACAAAGCCCCAGCACAGGCCACAGGCACTACTACTaGGGTGTCATCTGGCTGGGCCCTTCTCCACAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: RQSPSTGHRHYY*GVIWLGPSPQC Trigger: ACACTGTGGAGAAGGGCCCAGCCAGATGACACCCAAGTAGTAGTGCCTGTGGCCTGTGCTGGGGCTTTGTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAGGAAACCCGGGCCACTaGTGGAGGTCAGCAGGGCAC | + |
|
Preference number: 4 (lower is better) Translates to: SKLARLTKPKLRWELMPEGNPGH*WRSAGH Trigger: GTGCCCTGCTGACCTCCACCAGTGGCCCGGGTTTCC...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AACAACTCTCCATCTGCTCTCCCTTCCCAGAAGGGGGTAAGTTTGTGTCCATTTCCAGCCCAGGGGCCATaGAAGTCAGGTCCTGCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: NNSPSALPSQKGVSLCPFPAQGP*KSGPAA Trigger: TGCAGCAGGACCTGACTTCCATGGCCCCTGGGCTGG...AAATGGACACAAACTTACCCCCTTCTGGGAAGGGAGAGCAGATGGAGAGTTGTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | ATTGCCTCAGGTATATTGGGCTTTGTCACTCGCACAGCTTGGATAACCAGCCCATGCCTCTCTGGCCTGTaGCTCCTTTCCTGCCTTCTA | + |
|
Preference number: 4 (lower is better) Translates to: IASGILGFVTRTAWITSPCLSGL*LLSCLL Trigger: TAGAAGGCAGGAAAGGAGGCACAGGCCAGAGAGGCA...TGGGCTGGTTATCCAAGCTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAAT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| CDS-3UTR CCA 90 bp | AACAACTCTCCATCTGCTCTCCCTTCCCAGAAGGGGGTAAGTTTGTGTCCATTTAACGGGAGCATGAGATaGAAACCCGGGCCACTGGTG | + |
|
Preference number: 4 (lower is better) Translates to: NNSPSALPSQKGVSLCPFNGSMR*KPGPLV Trigger: CACCAGTGGCCCGGGTTTCCATCTCATGCTCCCGTT...AAATGGACACAAACTTACCCCCTTCTGGGAAGGGAGAGCAGATGGAGAGTTGTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAGTCACTCGCACAGCTTaGATAACCAGCCCAGGGGCC | + |
|
Preference number: 4 (lower is better) Translates to: SKLARLTKPKLRWELMPEVTRTA*ITSPGA Trigger: GGCCCCTGGGCTGGTTATCCAAGCTGTGCGAGTGAC...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | GTCTGCAGATTACCTGCAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCACTCACCCATAGGTGATTTCTaGAACCTGTGCCACTTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: VCRLPAELPSTEAFCVHSPIGDF*NLCHFF Trigger: GAAAAAGTGGCACAGGTTGCAGAAATCACCTATGGG...TGAGTGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | CATTCTCAGTTTCCTAGGGTGACTCACTGGAGCCGACTCTCAAGTGGCTGCCTGTTGTACTTCATCAGCTaGAGGTATTCTGGAGTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: HSQFPRVTHWSRLSSGCLLYFIS*RYSGVS Trigger: GCTGACTCCAGAATACCTGCAGCTGATGAAGTACAA...CAGGCAGCCACTTGAGAGTCGGCTCCAGTGAGTCACCCTAGGAAACTGAGAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | GTCTGCAGATTACCTGCAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCACTCAATCATACACTGCATTTaGGACCAGGAAGTTCACCAC | + |
|
Preference number: 4 (lower is better) Translates to: VCRLPAELPSTEAFCVHSIIHCI*DQEVHH Trigger: GTGGTGAACTTCCTGGTCCCAAATGCAGTGTATGAT...TGAGTGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR TCA 90 bp | AAATACCTGACAAGTCTGGTGCCACTTAGGAGCAAACTGGCCCGACTTACAAAAGCTTCTGGGCTGCAATaGGAAGCTTCGTCTTCTCGC | + |
|
Preference number: 4 (lower is better) Translates to: KYLTSLVPLRSKLARLTKASGLQ*EASSSR Trigger: GCGAGAAGACGAAGCTTCTCATTGCAGCCCAGAAGC...TTTTGTAAGTCGGGCCAGTTTGCTCCTAAGTGGCACCAGACTTGTCAGGTATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| 3UTR CAA 72 bp | TCTTCTCGCTTTCCATCAGCTCATAGTTCCTGCGGATaGCCTCAGGTATATTGGGCTTTGTCACTCGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: SSRFPSAHSSCG*PQVYWALSLAQ Trigger: CTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAATCCGCAGGAACTATGAGCTGATGGAAAGCGAGAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| CDS-3UTR TCA 90 bp | AGCTTCAAAGTGACAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTGCCCTTTTGCCCATAGGTaGTTTCTGCAACCTGTGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SFKVTMLVSAGQRSNLRCPFAHR*FLQPVP Trigger: TGGCACAGGTTGCAGAAATCACCTATGGGCAAAAGG...GCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | TACCTGACAAGTCTGGTGCCACTTAGGAGCAAACTGGCCCGACTTACAAAACCATTTTCCACCACCTTCTaGTTCTGGGCTGCAATGAGA | + |
|
Preference number: 4 (lower is better) Translates to: YLTSLVPLRSKLARLTKPFSTTF*FWAAMR Trigger: TCTCATTGCAGCCCAGAAGCAGAAGGTGGTGGAAAA...TGGTTTTGTAAGTCGGGCCAGTTTGCTCCTAAGTGGCACCAGACTTGTCAGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AGACAGCTTAACTCTCAAGTAATCCACTCAGTCAAAAAGCCCAGCCGGCCAACGATGCACAAAAGAAACTaGAAGCCACGGCCACAACAG | + |
|
Preference number: 4 (lower is better) Translates to: RQLNSQVIHSVKKPSRPTMHKRN*KPRPQQ Trigger: CTGTTGTGGCCGTGGCTTCCAGTTTCTTTTGTGCAT...CGTTGGCCGGCTGGGCTTTTTGACTGAGTGGATTACTTGAGAGTTAAGCTGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | AGCTTCAAAGTGACAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTGCGAAGTCAGGTCCTGCTaGAAAGCCAACTTGAGGTTT | + |
|
Preference number: 4 (lower is better) Translates to: SFKVTMLVSAGQRSNLRCEVRSC*KANLRF Trigger: AAACCTCAAGTTGGCTTTGCAGCAGGACCTGACTTC...GCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AGCTTCAAAGTGACAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTGCTTGCCTCAGGTATATTaGGCTTTGTCACTCGCACAG | + |
|
Preference number: 4 (lower is better) Translates to: SFKVTMLVSAGQRSNLRCLPQVY*ALSLAQ Trigger: CTGTGCGAGTGACAAAGCCCAATATACCTGAGGCAA...GCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | AGACAGCTTAACTCTCAAGTAATCCACTCAGTCAAAAAGCCCAGCCGGCCAACGTGTTGGGGATGTCTTTaGCGAAGTAAATCTTGCTGT | + |
|
Preference number: 4 (lower is better) Translates to: RQLNSQVIHSVKKPSRPTCWGCL*RSKSCC Trigger: ACAGCAAGATTTACTTCGGCAAAGACATCCCCAACA...CGTTGGCCGGCTGGGCTTTTTGACTGAGTGGATTACTTGAGAGTTAAGCTGTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAATCATCACACCACCACTaGTTCCACATGGTACGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SKLARLTKPKLRWELMPESSHHH*FHMVRS Trigger: AGAACGTACCATGTGGAACCAGTGGTGGTGTGATGA...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR TCA 90 bp | AGCTTCAAAGTGACAATGTTGGTGTCTGCAGGTCAGAGGTCAAATCTACGGTGCTATCTTGTGCACAGCTaGGAAGAGAGATGCACAAAA | + |
|
Preference number: 4 (lower is better) Translates to: SFKVTMLVSAGQRSNLRCYLVHS*EERCTK Trigger: TTTTGTGCATCTCTCTTCTCAGCTGTGCACAAGATA...GCACCGTAGATTTGACCTCTGACCTGCAGACACCAACATTGTCACTTTGAAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR TCA 90 bp | CTTCTCGCTTTCCATCAGCTCATAGTTCCTGCGGATTGCCTCAGGTATATTGGGGCTGCAAAGCCAACTTaGGGTTTTCATCAATTTGAT | + |
|
Preference number: 4 (lower is better) Translates to: LLAFHQLIVPADCLRYIGAAKPT*GFHQFD Trigger: ATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGC...CCCAATATACCTGAGGCAATCCGCAGGAACTATGAGCTGATGGAAAGCGAGAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| CDS-3UTR TCA 90 bp | AGACAGCTTAACTCTCAAGTAATCCACTCAGTCAAAAAGCCCAGCCGGCCAACGAGCATCTTCAATTTCTaGGATCTTCTTCTCTGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: RQLNSQVIHSVKKPSRPTSIFNF*DLLLCL Trigger: GAGACAGAGAAGAAGATCTCAGAAATTGAAGATGCT...CGTTGGCCGGCTGGGCTTTTTGACTGAGTGGATTACTTGAGAGTTAAGCTGTCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR TCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAATTCTGGAGTCAGCTTaGGCTTATTTGCTTCTGCGA | + |
|
Preference number: 4 (lower is better) Translates to: SKLARLTKPKLRWELMPEILESA*AYLLLR Trigger: TCGCAGAAGCAAATAAGCTCAAGCTGACTCCAGAAT...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR TCA 90 bp | AACCTGTGCCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCTCTCTGTTTCTGCAGGTTTTCATCAATTTaGTCTCCTCTGAACAGCAAC | + |
|
Preference number: 4 (lower is better) Translates to: NLCHFFCLNEGLLPLCFCRFSSI*SPLNSN Trigger: GTTGCTGTTCAGAGGAGATCAAATTGATGAAAACCT...GCAGAAACAGAGAGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
||
| CDS-3UTR GCA 90 bp | GTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATGCAGACCAGGCTGGGCTCTTCTGCTTCTGGGCTaGAATGAGAAGCTTCGTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VLILFVFAIVSLCRPGWALLLLG*NEKLRL Trigger: AAGACGAAGCTTCTCATTGCAGCCCAGAAGCAGAAG...AGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AGCAAACTGGCCCGACTTACAAAACCAAAACTGAGGTGGGAATTGATGCCAGAAACCACTGGTTCCACATaGTACGTTCTTCACTTCATC | + |
|
Preference number: 4 (lower is better) Translates to: SKLARLTKPKLRWELMPETTGST*YVLHFI Trigger: GATGAAGTGAAGAACGTACCATGTGGAACCAGTGGT...TTCTGGCATCAATTCCCACCTCAGTTTTGGTTTTGTAAGTCGGGCCAGTTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR TCA 90 bp | AACAACTCTCCATCTGCTCTCCCTTCCCAGAAGGGGGTAAGTTTGTGTCCATTTAACTGGTTAAGCTCATaGTGGATCTTGTTGAAGATG | + |
|
Preference number: 4 (lower is better) Translates to: NNSPSALPSQKGVSLCPFNWLSS*WILLKM Trigger: CATCTTCAACAAGATCCATCATGAGCTTAACCAGTT...AAATGGACACAAACTTACCCCCTTCTGGGAAGGGAGAGCAGATGGAGAGTTGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | GTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATGCAGACCAGGCTGGGCTTGCTGTTGGAAGCAATaGCCTTGTACTTCATCAGCT | + |
|
Preference number: 4 (lower is better) Translates to: VLILFVFAIVSLCRPGWACCWKQ*PCTSSA Trigger: AGCTGATGAAGTACAAGGCCATTGCTTCCAACAGCA...AGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | AAATACCTGACAAGTCTGGTGCCACTTAGGAGCAAACTGGCCCGACTTACAAAAGGCCTTGTCATAGTCTaGAGTATAGTTCTTCACTAT | + |
|
Preference number: 4 (lower is better) Translates to: KYLTSLVPLRSKLARLTKGLVIV*SIVLHY Trigger: ATAGTGAAGAACTATACTGCAGACTATGACAAGGCC...TTTTGTAAGTCGGGCCAGTTTGCTCCTAAGTGGCACCAGACTTGTCAGGTATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR GCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTAGAGCTTATTTGCTTCTaGGATCTTCAGCGCTGTGTA | + |
|
Preference number: 4 (lower is better) Translates to: KVAGPWESPTKTEFYKRLELICF*DLQRCV Trigger: TACACAGCGCTGAAGATCGCAGAAGCAAATAAGCTC...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
||
| CDS-3UTR CCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTACATCAGTTTGGAGAGTaGTCTGTACAGACTTATAGG | + |
|
Preference number: 4 (lower is better) Translates to: KVAGPWESPTKTEFYKRLHQFGE*SVQTYR Trigger: CCTATAAGTCTGTACAGACCACTCTCCAAACTGATG...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS-3UTR TCA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTAGCTGCAAAGCCAACTTaGGGTTTTCATCAATTTGAT | + |
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Preference number: 4 (lower is better) Translates to: KVAGPWESPTKTEFYKRLAAKPT*GFHQFD Trigger: ATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGC...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS-3UTR CAA 90 bp | GTCTGCAGATTACCTGCAGAGCTGCCCTCCACAGAGGCATTCTGTGTGCACTCAATTGCCTCAGGTATATaGGGCTTTGTCACTCGCACA | + |
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Preference number: 5 (lower is better) Translates to: VCRLPAELPSTEAFCVHSIASGI*GFVTRT Trigger: TGTGCGAGTGACAAAGCCCAATATACCTGAGGCAAT...TGAGTGCACACAGAATGCCTCTGTGGAGGGCAGCTCTGCAGGTAATCTGCAGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS TCA 90 bp | CCAGCCCAGGGGCCATGGAAGTCAGGTCCTGCTGCAAAGCCAACTTaGGGTTTTCATCAATTTGATCAAACAGCTCGATATAGACTTCCT | + |
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Preference number: 5 (lower is better) Translates to: PAQGPWKSGPAAKPT*GFHQFDQTARYRLP Trigger: AGGAAGTCTATATCGAGCTGTTTGATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGCAGGACCTGACTTCCATGGCCCCTGGGCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 ENSMUST00000209520.2 ENSMUST00000209563.2 |
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| CDS GCA 90 bp | CTCCTTCTCCATCACCTTTTGCCCATAGGTGATTTCTGCAACCTGTaGCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCTCTCTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: LLLHHLLPIGDFCNL*HFFCLNEGLLPLCF Trigger: GAAACAGAGAGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAATCACCTATGGGCAAAAGGTGATGGAGAAGGAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 |
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| CDS GCA 90 bp | CTTCTCTGTCTCCTTCTCCATCACCTTTTGCCCATAGGTGATTTCTaGAACCTGTGCCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCT | + |
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Preference number: 5 (lower is better) Translates to: LLCLLLHHLLPIGDF*NLCHFFCLNEGLLP Trigger: AGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAATCACCTATGGGCAAAAGGTGATGGAGAAGGAGACAGAGAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 |
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| CDS-3UTR CAA 90 bp | AACAACTCTCCATCTGCTCTCCCTTCCCAGAAGGGGGTAAGTTTGTGTCCATTTTGTCCCTCTTCTATCTaGTGCACAGCTGAGAAGAGA | + |
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Preference number: 5 (lower is better) Translates to: NNSPSALPSQKGVSLCPFCPSSI*CTAEKR Trigger: TCTCTTCTCAGCTGTGCACAAGATAGAAGAGGGACA...AAATGGACACAAACTTACCCCCTTCTGGGAAGGGAGAGCAGATGGAGAGTTGTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS-3UTR CAA 90 bp | GTGTTAATTCTGTTTGTTTTTGCCATAGTCTCACTATGCAGACCAGGCTGGGCTCTTCACTTCATCAGTTaGGAGAGTGGTCTGTACAGA | + |
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Preference number: 5 (lower is better) Translates to: VLILFVFAIVSLCRPGWALHFIS*ESGLYR Trigger: TCTGTACAGACCACTCTCCAAACTGATGAAGTGAAG...AGCCCAGCCTGGTCTGCATAGTGAGACTATGGCAAAAACAAACAGAATTAACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS-3UTR CAA 90 bp | AAGGTGGCTGGGCCTTGGGAAAGTCCTACAAAAACTGAATTTTACAAACGGTTATATCATACACTGCATTaGGGACCAGGAAGTTCACCA | + |
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Preference number: 5 (lower is better) Translates to: KVAGPWESPTKTEFYKRLYHTLH*GPGSSP Trigger: TGGTGAACTTCCTGGTCCCAAATGCAGTGTATGATA...TAACCGTTTGTAAAATTCAGTTTTTGTAGGACTTTCCCAAGGCCCAGCCACCTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS-3UTR CAA 90 bp | TTCAGGATAAGAAATCCCTTTCTCTCATATCTATTCTTCGCATTCTCAGTTTCCGAATCCATAAACATGTaGGGGATGTCTTTGCCGAAG | + |
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Preference number: 5 (lower is better) Translates to: FRIRNPFLSYLFFAFSVSESINM*GMSLPK Trigger: CTTCGGCAAAGACATCCCCAACATGTTTATGGATTC...GGAAACTGAGAATGCGAAGAATAGATATGAGAGAAAGGGATTTCTTATCCTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033873.9 |
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| CDS GCA 72 bp | CCCGGGCCAGGAACGCAGCATCTAAGGGGTGAAGGGTaGAGGGAACTTCAATTTCTGAGATCTTCTTCTCTG | + |
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Preference number: 6 (lower is better) Translates to: PGPGTQHLRGEG*RELQFLRSSSL Trigger: CAGAGAAGAAGATCTCAGAAATTGAAGTTCCCTGCACCCTTCACCCCTTAGATGCTGCGTTCCTGGCCCGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000209504.2 |
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| CDS CCA 72 bp | TGTGCACAGCTGAGAAGAGAGATGCACAAAAGAAACTaGAAGCCACGGCCACAACAGCTCCCAACTGAGCCA | + |
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Preference number: 6 (lower is better) Translates to: CAQLRREMHKRN*KPRPQQLPTEP Trigger: TGGCTCAGTTGGGAGCTGTTGTGGCCGTGGCTTCCAGTTTCTTTTGTGCATCTCTCTTCTCAGCTGTGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000033873.9 ENSMUST00000209520.2 ENSMUST00000209563.2 ENSMUST00000209795.2 ENSMUST00000209976.2 ENSMUST00000211043.2 |
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| CDS GCA 72 bp | CAGCTGCAGGTATTCTGGAGTCAGCTTGAGCTTATTTaGTTCTGCGATCTTCAGCGCTGTGTAGCACTCAGC | + |
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Preference number: 6 (lower is better) Translates to: QLQVFWSQLELI*FCDLQRCVALS Trigger: GCTGAGTGCTACACAGCGCTGAAGATCGCAGAAGCAAATAAGCTCAAGCTGACTCCAGAATACCTGCAGCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 |
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| CDS GCA 72 bp | CATCACCTTTTGCCCATAGGTGATTTCTGCAACCTGTaGCACTTTTTCTGCCTCAATGAGGGCCTTCTTCCT | + |
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Preference number: 6 (lower is better) Translates to: HHLLPIGDFCNL*HFFCLNEGLLP Trigger: AGGAAGAAGGCCCTCATTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAATCACCTATGGGCAAAAGGTGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 |
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| CDS TCA 72 bp | TCTCTGTCTCCTTCTCCATCACCTTTTGCCCATAGGTaGTTTCTGCAACCTGTGCCACTTTTTCTGCCTCAA | + |
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Preference number: 6 (lower is better) Translates to: SLSPSPSPFAHR*FLQPVPLFLPQ Trigger: TTGAGGCAGAAAAAGTGGCACAGGTTGCAGAAATCACCTATGGGCAAAAGGTGATGGAGAAGGAGACAGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 |
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| CDS TCA 72 bp | GGGCCATGGAAGTCAGGTCCTGCTGCAAAGCCAACTTaGGGTTTTCATCAATTTGATCAAACAGCTCGATAT | + |
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Preference number: 6 (lower is better) Translates to: GPWKSGPAAKPT*GFHQFDQTARY Trigger: ATATCGAGCTGTTTGATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGCAGGACCTGACTTCCATGGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 ENSMUST00000209520.2 ENSMUST00000209563.2 |
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| CDS TCA 72 bp | TCCTGCTGCAAAGCCAACTTGAGGTTTTCATCAATTTaGTCTCCTCTGAACAGCAACAGTAAAGCTGCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SCCKANLRFSSI*SPLNSNSKAAS Trigger: AGAGGCAGCTTTACTGTTGCTGTTCAGAGGAGATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGCAGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000211233.2 |
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| CDS CAA 90 bp | GGAAGTCAGGTCCTGCTGCAAAGCCAACTTGAGGTTTTCATCAATTaGATCAAACAGCTCGATATAGACTTCCTGAAGAGTATGAACGCT | + |
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Preference number: 6 (lower is better) Translates to: GSQVLLQSQLEVFIN*IKQLDIDFLKSMNA Trigger: AGCGTTCATACTCTTCAGGAAGTCTATATCGAGCTGTTTGATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGCAGGACCTGACTTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 ENSMUST00000209520.2 ENSMUST00000209563.2 ENSMUST00000211043.2 |
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| CDS CAA 72 bp | GTCCTGCTGCAAAGCCAACTTGAGGTTTTCATCAATTaGATCAAACAGCTCGATATAGACTTCCTGAAGAGT | + |
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Preference number: 6 (lower is better) Translates to: VLLQSQLEVFIN*IKQLDIDFLKS Trigger: ACTCTTCAGGAAGTCTATATCGAGCTGTTTGATCAAATTGATGAAAACCTCAAGTTGGCTTTGCAGCAGGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 5 transcripts: ENSMUST00000033873.9 ENSMUST00000209504.2 ENSMUST00000209520.2 ENSMUST00000209563.2 ENSMUST00000211043.2 |
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