Pregenerated sensors for ERICH2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075302Ensembl transcript IDs: ENSMUST00000100041.9, ENSMUST00000134607.8, ENSMUST00000153121.2
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | ATCTCGGCCTGCGTCCAAAGGGGGCTTTGTGTGACTTTTCTTTATTGGCGCCGCCAGTCACCACACTGCTaGTTACCCTCTGGCCGCCCT | + |
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Preference number: 4 (lower is better) Translates to: ISACVQRGLCVTFLYWRRQSPHC*LPSGRP Trigger: AGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACTG...GCGGCGCCAATAAAGAAAAGTCACACAAAGCCCCCTTTGGACGCAGGCCGAGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153121.2 |
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| CDS-3UTR GCA 90 bp | ATCTCGGCCTGCGTCCAAAGGGGGCTTTGTGTGACTTTTCTTTATTGGCGCCGCTGTTCTCCAGGGGAATaGTGGGACTTCTTGTCCTTC | + |
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Preference number: 4 (lower is better) Translates to: ISACVQRGLCVTFLYWRRCSPGE*WDFLSF Trigger: GAAGGACAAGAAGTCCCAGCATTCCCCTGGAGAACA...GCGGCGCCAATAAAGAAAAGTCACACAAAGCCCCCTTTGGACGCAGGCCGAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000153121.2 |
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| CDS-3UTR CCA 90 bp | CTCGGCCTGCGTCCAAAGGGGGCTTTGTGTGACTTTTCTTTATTGGCGCCGCTCTGTCCAGGTAGTTGCTaGGAATTTCAGGAATACAAA | + |
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Preference number: 4 (lower is better) Translates to: LGLRPKGALCDFSLLAPLCPGSC*EFQEYK Trigger: TTTGTATTCCTGAAATTCCCAGCAACTACCTGGACA...GAGCGGCGCCAATAAAGAAAAGTCACACAAAGCCCCCTTTGGACGCAGGCCGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153121.2 |
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| CDS GCA 90 bp | GGAGACCGGACGGGCTGCGGGAGGAGCCCCGGGAACCACCCGAGCTaGCCAGCGACTGGACAGCCCGACGCAGCGGAGGGGCGAGCGGGG | + |
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Preference number: 5 (lower is better) Translates to: GDRTGCGRSPGNHPS*PATGQPDAAEGRAG Trigger: CCCCGCTCGCCCCTCCGCTGCGTCGGGCTGTCCAGTCGCTGGGCAGCTCGGGTGGTTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 90 bp | GCGCAGAGCGCGGGGCGGGAGCGGAGCGGGAACTGTTCCAGCTGCTaGAACCACGCGAAGGGCGGAGCGGGCGGCGCGGGTGGCCCAGCG | + |
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Preference number: 5 (lower is better) Translates to: AQSAGRERSGNCSSC*NHAKGGAGGAGGPA Trigger: CGCTGGGCCACCCGCGCCGCCCGCTCCGCCCTTCGCGTGGTTCCAGCAGCTGGAACAGTTCCCGCTCCGCTCCCGCCCCGCGCTCTGCGC 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 90 bp | TTCCAGCTGCTGGAACCACGCGAAGGGCGGAGCGGGCGGCGCGGGTaGCCCAGCGTCCGGAGGAACTGGGCGTCGCGCTGCGGGGCAAGT | + |
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Preference number: 5 (lower is better) Translates to: FQLLEPREGRSGRRG*PSVRRNWASRCGAS Trigger: ACTTGCCCCGCAGCGCGACGCCCAGTTCCTCCGGACGCTGGGCCACCCGCGCCGCCCGCTCCGCCCTTCGCGTGGTTCCAGCAGCTGGAA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 90 bp | GGCCAGCCCCGCTCCGCACTCGCGGTGGGTTCCGAGTTGCGAGCCTaGGACGCCGCGTTGCCATGGAGACCGGACGGGCTGCGGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GQPRSALAVGSELRA*DAALPWRPDGLREE Trigger: CTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 90 bp | CTCGCGGTGGGTTCCGAGTTGCGAGCCTGGGACGCCGCGTTGCCATaGAGACCGGACGGGCTGCGGGAGGAGCCCCGGGAACCACCCGAG | + |
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Preference number: 5 (lower is better) Translates to: LAVGSELRAWDAALP*RPDGLREEPREPPE Trigger: CTCGGGTGGTTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 90 bp | AGTTGCGAGCCTGGGACGCCGCGTTGCCATGGAGACCGGACGGGCTaGGGGAGGAGCCCCGGGAACCACCCGAGCTGCCCAGCGACTGGA | + |
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Preference number: 5 (lower is better) Translates to: SCEPGTPRCHGDRTG*GRSPGNHPSCPATG Trigger: TCCAGTCGCTGGGCAGCTCGGGTGGTTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 90 bp | ACCAGGAAGGCCAGCCCCGCTCCGCACTCGCGGTGGGTTCCGAGTTaGGAGCCTGGGACGCCGCGTTGCCATGGAGACCGGACGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: TRKASPAPHSRWVPS*EPGTPRCHGDRTGC Trigger: GCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGT 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 90 bp | AGCTGTCCTCGCTGCCATCCTCACTGCTGTCCACCTCGCTCTCGCTaGTCGAGTCCTCGTCACTGTCCTCTTCGTCCTCCTCGTCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: SCPRCHPHCCPPRSR*SSPRHCPLRPPRPE Trigger: CTCAGGACGAGGAGGACGAAGAGGACAGTGACGAGGACTCGAGCAGCGAGAGCGAGGTGGACAGCAGTGAGGATGGCAGCGAGGACAGCT 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS TCA 90 bp | CCCATTTCTGCTCTCAGGAATTCTGCCATTAGCTCCAGTGGGGCTTaGGTCGCCTTCTTAGTGGGGCCTTCGTCATCGTCGTTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: PISALRNSAISSSGA*VAFLVGPSSSSLLL Trigger: CAGCAGCAACGACGATGACGAAGGCCCCACTAAGAAGGCGACTCAAGCCCCACTGGAGCTAATGGCAGAATTCCTGAGAGCAGAAATGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS-3UTR CAA 90 bp | CTCGGCCTGCGTCCAAAGGGGGCTTTGTGTGACTTTTCTTTATTGGCGCCGCTCGAATGCTGGGACTTCTaGTCCTTCTCGGGCAGTATT | + |
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Preference number: 5 (lower is better) Translates to: LGLRPKGALCDFSLLAPLECWDF*SFSGSI Trigger: AATACTGCCCGAGAAGGACAAGAAGTCCCAGCATTC...GAGCGGCGCCAATAAAGAAAAGTCACACAAAGCCCCCTTTGGACGCAGGCCGAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000153121.2 |
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| CDS CCA 90 bp | GACTTAAGCAACTGGTTTCCTTCAACGTGTTCTCCAGGGGAATGCTaGGACTTCTTGTCCTTCTCGGGCAGTATTTCGACAGCCGTGCGG | + |
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Preference number: 5 (lower is better) Translates to: DLSNWFPSTCSPGEC*DFLSFSGSISTAVR Trigger: CCGCACGGCTGTCGAAATACTGCCCGAGAAGGACAAGAAGTCCCAGCATTCCCCTGGAGAACACGTTGAAGGAAACCAGTTGCTTAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000153121.2 |
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| CDS GCA 90 bp | TCAGTTTTTCCTTCGGATCATACAATAGCAATCTGCCATTCTGTCTaGTTTTTGATGCCTGCACATCAGTCTTGTCCAGGTAGTTGCTGG | + |
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Preference number: 5 (lower is better) Translates to: SVFPSDHTIAICHSV*FLMPAHQSCPGSCW Trigger: CCAGCAACTACCTGGACAAGACTGATGTGCAGGCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGGAAAAACTGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 90 bp | GGCAATAGTCACTATTTCCCTCTTGCTTTGCAAGGACCAAATCCTTaGTTGTTTCACCTGCGCTTTCTTTTAGGAAGGAAGATGACCACA | + |
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Preference number: 5 (lower is better) Translates to: GNSHYFPLALQGPNP*LFHLRFLLGRKMTT Trigger: TGTGGTCATCTTCCTTCCTAAAAGAAAGCGCAGGTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTGACTATTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 72 bp | CTGGAACCACGCGAAGGGCGGAGCGGGCGGCGCGGGTaGCCCAGCGTCCGGAGGAACTGGGCGTCGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: LEPREGRSGRRG*PSVRRNWASRC Trigger: GCAGCGCGACGCCCAGTTCCTCCGGACGCTGGGCCACCCGCGCCGCCCGCTCCGCCCTTCGCGTGGTTCCAG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | AGCGCGGGGCGGGAGCGGAGCGGGAACTGTTCCAGCTaGTGGAACCACGCGAAGGGCGGAGCGGGCGGCGCG | + |
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Preference number: 6 (lower is better) Translates to: SAGRERSGNCSS*WNHAKGGAGGA Trigger: CGCGCCGCCCGCTCCGCCCTTCGCGTGGTTCCAGCAGCTGGAACAGTTCCCGCTCCGCTCCCGCCCCGCGCT 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | CCTGGGACGCCGCGTTGCCATGGAGACCGGACGGGCTaGGGGAGGAGCCCCGGGAACCACCCGAGCTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: PGTPRCHGDRTG*GRSPGNHPSCP Trigger: TGGGCAGCTCGGGTGGTTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | GCCAGCCCCGCTCCGCACTCGCGGTGGGTTCCGAGTTaGGAGCCTGGGACGCCGCGTTGCCATGGAGACCGG | + |
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Preference number: 6 (lower is better) Translates to: ASPAPHSRWVPS*EPGTPRCHGDR Trigger: CCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 72 bp | GGCCAGCCCCGCTCCGCACTCGCGGTGGGTTCCGAGTaGCGAGCCTGGGACGCCGCGTTGCCATGGAGACCG | + |
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Preference number: 6 (lower is better) Translates to: GQPRSALAVGSE*RAWDAALPWRP Trigger: CGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCC 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 90 bp | GACCAGGAAGGCCAGCCCCGCTCCGCACTCGCGGTGGGTTCCGAGTaGCGAGCCTGGGACGCCGCGTTGCCATGGAGACCGGACGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: DQEGQPRSALAVGSE*RAWDAALPWRPDGL Trigger: CAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCGGGGCTGGCCTTCCTGGTC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 72 bp | GGTTCCGAGTTGCGAGCCTGGGACGCCGCGTTGCCATaGAGACCGGACGGGCTGCGGGAGGAGCCCCGGGAA | + |
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Preference number: 6 (lower is better) Translates to: GSELRAWDAALP*RPDGLREEPRE Trigger: TTCCCGGGGCTCCTCCCGCAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CCA 72 bp | CGCTCCGCACTCGCGGTGGGTTCCGAGTTGCGAGCCTaGGACGCCGCGTTGCCATGGAGACCGGACGGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSALAVGSELRA*DAALPWRPDGL Trigger: CAGCCCGTCCGGTCTCCATGGCAACGCGGCGTCCCAGGCTCGCAACTCGGAACCCACCGCGAGTGCGGAGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | AGGACCCATCCTCGCACTCGTCCGAGCTGTCCTCGCTaGCATCCTCACTGCTGTCCACCTCGCTCTCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: RTHPRTRPSCPR*HPHCCPPRSRC Trigger: GCAGCGAGAGCGAGGTGGACAGCAGTGAGGATGGCAGCGAGGACAGCTCGGACGAGTGCGAGGATGGGTCCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | CGCTGCCATCCTCACTGCTGTCCACCTCGCTCTCGCTaGTCGAGTCCTCGTCACTGTCCTCTTCGTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: RCHPHCCPPRSR*SSPRHCPLRPP Trigger: AGGAGGACGAAGAGGACAGTGACGAGGACTCGAGCAGCGAGAGCGAGGTGGACAGCAGTGAGGATGGCAGCG 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | ACAGTCACCACACTGCTGCTTACCCTCTGGCCGCCCTaGCAAGTTGTTTCCTCGAAGGGCAGACCAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: TVTTLLLTLWPP*QVVSSKGRPGR Trigger: CCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000100041.9 |
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| CDS GCA 72 bp | CGTGCGGTTCCACAGGACCAACAGTCACCACACTGCTaGTTACCCTCTGGCCGCCCTGCCAAGTTGTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: RAVPQDQQSPHC*LPSGRPAKLFP Trigger: AGGAAACAACTTGGCAGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACTGTTGGTCCTGTGGAACCGCACG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000153121.2 |
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| CDS GCA 72 bp | ACAGTCACCACACTGCTGCTTACCCTCTGGCCGCCCTaGCAAGTTGTTTCCTCGAAGGGCAGACCAGGAAGN | + |
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Preference number: 6 (lower is better) Translates to: TVTTLLLTLWPP*QVVSSKGRPGX Trigger: NCTTCCTGGTCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000153121.2 |
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| CDS CCA 72 bp | ACAGGACCAACAGTCACCACACTGCTGCTTACCCTCTaGCCGCCCTGCCAAGTTGTTTCCTCGAAGGGCAGA | + |
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Preference number: 6 (lower is better) Translates to: TGPTVTTLLLTL*PPCQVVSSKGR Trigger: TCTGCCCTTCGAGGAAACAACTTGGCAGGGCGGCCAGAGGGTAAGCAGCAGTGTGGTGACTGTTGGTCCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000153121.2 |
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| CDS TCA 72 bp | GCTCTCAGGAATTCTGCCATTAGCTCCAGTGGGGCTTaGGTCGCCTTCTTAGTGGGGCCTTCGTCATCGTCG | + |
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Preference number: 6 (lower is better) Translates to: ALRNSAISSSGA*VAFLVGPSSSS Trigger: CGACGATGACGAAGGCCCCACTAAGAAGGCGACTCAAGCCCCACTGGAGCTAATGGCAGAATTCCTGAGAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | ACTTCTTGTCCTTCTCGGGCAGTATTTCGACAGCCGTaGGGTTCCACAGGACCAACAGTCACCACACTGCTG | + |
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Preference number: 6 (lower is better) Translates to: TSCPSRAVFRQP*GSTGPTVTTLL Trigger: CAGCAGTGTGGTGACTGTTGGTCCTGTGGAACCGCACGGCTGTCGAAATACTGCCCGAGAAGGACAAGAAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000153121.2 |
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| CDS GCA 72 bp | AGCAACTGGTTTCCTTCAACGTGTTCTCCAGGGGAATaGTGGGACTTCTTGTCCTTCTCGGGCAGTATTTCG | + |
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Preference number: 6 (lower is better) Translates to: SNWFPSTCSPGE*WDFLSFSGSIS Trigger: CGAAATACTGCCCGAGAAGGACAAGAAGTCCCAGCATTCCCCTGGAGAACACGTTGAAGGAAACCAGTTGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000153121.2 |
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| CDS TCA 72 bp | GCTGCTGTCCTCTTCACCATCACCATCTGTCGAGTCTaGCAAGTTCTCTTCAATGTCCTTAAGGCAATAGTC | + |
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Preference number: 6 (lower is better) Translates to: AAVLFTITICRV*QVLFNVLKAIV Trigger: GACTATTGCCTTAAGGACATTGAAGAGAACTTGTCAGACTCGACAGATGGTGATGGTGAAGAGGACAGCAGC 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | CCTTCGGATCATACAATAGCAATCTGCCATTCTGTCTaGTTTTTGATGCCTGCACATCAGTCTTGTCCAGGT | + |
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Preference number: 6 (lower is better) Translates to: PSDHTIAICHSV*FLMPAHQSCPG Trigger: ACCTGGACAAGACTGATGTGCAGGCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 90 bp | CGCTTTCTTTTAGGAAGGAAGATGACCACAGGCCGGACTGCTGGTTaGTTAAGACATCTTTATTTTCAGTACTCCTTGAGGATGGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: RFLLGRKMTTGRTAG*LRHLYFQYSLRMVC Trigger: ACAGACCATCCTCAAGGAGTACTGAAAATAAAGATGTCTTAACAAACCAGCAGTCCGGCCTGTGGTCATCTTCCTTCCTAAAAGAAAGCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | CACTATTTCCCTCTTGCTTTGCAAGGACCAAATCCTTaGTTGTTTCACCTGCGCTTTCTTTTAGGAAGGAAG | + |
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Preference number: 6 (lower is better) Translates to: HYFPLALQGPNP*LFHLRFLLGRK Trigger: CTTCCTTCCTAAAAGAAAGCGCAGGTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 72 bp | TTAGGAAGGAAGATGACCACAGGCCGGACTGCTGGTTaGTTAAGACATCTTTATTTTCAGTACTCCTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LGRKMTTGRTAG*LRHLYFQYSLR Trigger: CCTCAAGGAGTACTGAAAATAAAGATGTCTTAACAAACCAGCAGTCCGGCCTGTGGTCATCTTCCTTCCTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 90 bp | TTTCCTTCGGATCATACAATAGCAATCTGCCATTCTGTCTGCTTTTaGATGCCTGCACATCAGTCTTGTCCAGGTAGTTGCTGGGAATTT | + |
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Preference number: 6 (lower is better) Translates to: FPSDHTIAICHSVCF*MPAHQSCPGSCWEF Trigger: AAATTCCCAGCAACTACCTGGACAAGACTGATGTGCAGGCATCAAAAAGCAGACAGAATGGCAGATTGCTATTGTATGATCCGAAGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 90 bp | CAAGTTCTCTTCAATGTCCTTAAGGCAATAGTCACTATTTCCCTCTaGCTTTGCAAGGACCAAATCCTTGCTTGTTTCACCTGCGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: QVLFNVLKAIVTISL*LCKDQILACFTCAF Trigger: GAAAGCGCAGGTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTGACTATTGCCTTAAGGACATTGAAGAGAACTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS GCA 72 bp | CTGGAGAAGTATAAAGCTTGTTTGATAATCTCGGCCTaGGTCCAAAGGGGGCTTTGTGTGACTTTTCTTTAT | + |
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Preference number: 6 (lower is better) Translates to: LEKYKACLIISA*VQRGLCVTFLY Trigger: ATAAAGAAAAGTCACACAAAGCCCCCTTTGGACGCAGGCCGAGATTATCAAACAAGCTTTATACTTCTCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 72 bp | TCACTATTTCCCTCTTGCTTTGCAAGGACCAAATCCTaGCTTGTTTCACCTGCGCTTTCTTTTAGGAAGGAA | + |
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Preference number: 6 (lower is better) Translates to: SLFPSCFARTKS*LVSPALSFRKE Trigger: TTCCTTCCTAAAAGAAAGCGCAGGTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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| CDS CAA 72 bp | TTCAATGTCCTTAAGGCAATAGTCACTATTTCCCTCTaGCTTTGCAAGGACCAAATCCTTGCTTGTTTCACC | + |
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Preference number: 6 (lower is better) Translates to: FNVLKAIVTISL*LCKDQILACFT Trigger: GGTGAAACAAGCAAGGATTTGGTCCTTGCAAAGCAAGAGGGAAATAGTGACTATTGCCTTAAGGACATTGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000100041.9 ENSMUST00000134607.8 |
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