Pregenerated sensors for ERH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021131Ensembl transcript IDs: ENSMUST00000021559.14, ENSMUST00000218364.2, ENSMUST00000218740.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AATCCCAGCACTTGGAGGCAGACAGATTTGAATTTGAGTCCAGCCTaGTCTACAGAGCAAGTTTCAGGACAGTCAGGGATACACAGTGGA | + |
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Preference number: 1 (lower is better) Translates to: NPSTWRQTDLNLSPA*STEQVSGQSGIHSG Trigger: TCCACTGTGTATCCCTGACTGTCCTGAAACTTGCTCTGTAGACCAGGCTGGACTCAAATTCAAATCTGTCTGCCTCCAAGTGCTGGGATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| 3UTR CCA 90 bp | AGCCTGGTCTACAGAGCAAGTTTCAGGACAGTCAGGGATACACAGTaGAACCCTATCTCAAACAAACTAACAAACCTAAAAGACAAACTG | + |
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Preference number: 1 (lower is better) Translates to: SLVYRASFRTVRDTQ*NPISNKLTNLKDKL Trigger: CAGTTTGTCTTTTAGGTTTGTTAGTTTGTTTGAGATAGGGTTCCACTGTGTATCCCTGACTGTCCTGAAACTTGCTCTGTAGACCAGGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| 3UTR CAA 90 bp | CAAGGGAAGGAAAGCACCAGGTGTGGTGGTATAGAATCCCAGCACTaGGAGGCAGACAGATTTGAATTTGAGTCCAGCCTGGTCTACAGA | + |
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Preference number: 2 (lower is better) Translates to: QGKESTRCGGIESQH*EADRFEFESSLVYR Trigger: TCTGTAGACCAGGCTGGACTCAAATTCAAATCTGTCTGCCTCCAAGTGCTGGGATTCTATACCACCACACCTGGTGCTTTCCTTCCCTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| 3UTR-3UTR CCA 90 bp | ATCTGTAGTATAACAAGGGAAGGAAAGCACCAGGTGTGGTGGTATAGAATCCCAGGCTCCAGAGGACCTTaGGTTCAATTCCCAATACCC | + |
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Preference number: 2 (lower is better) Translates to: ICSITREGKHQVWWYRIPGSRGP*VQFPIP Trigger: GGGTATTGGGAATTGAACCCAAGGTCCTCTGGAGCC...TGGGATTCTATACCACCACACCTGGTGCTTTCCTTCCCTTGTTATACTACAGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| 3UTR-3UTR CAA 90 bp | AGCACCAGGTGTGGTGGTATAGAATCCCAGCACTTGGAGGCAGACAGATTTGAATGGCTCCAGAGGACCTaGGGTTCAATTCCCAATACC | + |
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Preference number: 3 (lower is better) Translates to: STRCGGIESQHLEADRFEWLQRT*GSIPNT Trigger: GGTATTGGGAATTGAACCCAAGGTCCTCTGGAGCCA...TTCAAATCTGTCTGCCTCCAAGTGCTGGGATTCTATACCACCACACCTGGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| 3UTR CCA 72 bp | ATCTGTAGTATAACAAGGGAAGGAAAGCACCAGGTGTaGTGGTATAGAATCCCAGCACTTGGAGGCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: ICSITREGKHQV*WYRIPALGGRQ Trigger: CTGTCTGCCTCCAAGTGCTGGGATTCTATACCACCACACCTGGTGCTTTCCTTCCCTTGTTATACTACAGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| 3UTR TCA 72 bp | AAAGTAAAGGAGCAAAGGGCCACGGTGGCTTCAGAGTaGCAAGATCATTCACGGTTCATGTCAGACATTCAA | + |
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Preference number: 3 (lower is better) Translates to: KVKEQRATVASE*QDHSRFMSDIQ Trigger: TTGAATGTCTGACATGAACCGTGAATGATCTTGTCACTCTGAAGCCACCGTGGCCCTTTGCTCCTTTACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| 3UTR CCA 72 bp | CAAGATCATTCACGGTTCATGTCAGACATTCAATCTTaGCTTGAGTGTAACAACGTTGAAACAGGATCGCTA | + |
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Preference number: 3 (lower is better) Translates to: QDHSRFMSDIQS*LECNNVETGSL Trigger: TAGCGATCCTGTTTCAACGTTGTTACACTCAAGCCAAGATTGAATGTCTGACATGAACCGTGAATGATCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| 3UTR TCA 72 bp | CTACTGACAATAAAATGTAACAAGCACGTCAGAATCTaGAACCTCACACCAACGAAACAAAACAAGCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: LLTIKCNKHVRI*NLTPTKQNKPC Trigger: ACAGGGCTTGTTTTGTTTCGTTGGTGTGAGGTTTCAGATTCTGACGTGCTTGTTACATTTTATTGTCAGTAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000218740.2 |
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| 3UTR CCA 72 bp | TACAGAGCAAGTTTCAGGACAGTCAGGGATACACAGTaGAACCCTATCTCAAACAAACTAACAAACCTAAAA | + |
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Preference number: 3 (lower is better) Translates to: YRASFRTVRDTQ*NPISNKLTNLK Trigger: TTTTAGGTTTGTTAGTTTGTTTGAGATAGGGTTCCACTGTGTATCCCTGACTGTCCTGAAACTTGCTCTGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| CDS-3UTR CCA 90 bp | CACCCCCACAAAGGGTTAGTGCGCTCACTGCTTAAAAGCAGACTCGACAGTTTCTACTTCCCAGCCTGTTaGGCCTGCCGACGGAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: HPHKGLVRSLLKSRLDSFYFPAC*ACRRRS Trigger: GCTCCTCCGTCGGCAGGCCCAACAGGCTGGGAAGTA...GAAACTGTCGAGTCTGCTTTTAAGCAGTGAGCGCACTAACCCTTTGTGGGGGTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| CDS-3UTR TCA 90 bp | AGCACCAGGTGTGGTGGTATAGAATCCCAGCACTTGGAGGCAGACAGATTTGAACAGTTCCAGAGGATTTaGCACCTCTCTTCTGGCCCA | + |
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Preference number: 4 (lower is better) Translates to: STRCGGIESQHLEADRFEQFQRI*HLSSGP Trigger: TGGGCCAGAAGAGAGGTGTCAAATCCTCTGGAACTG...TTCAAATCTGTCTGCCTCCAAGTGCTGGGATTCTATACCACCACACCTGGTGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| CDS-3UTR CCA 90 bp | AGAGCAAGTTTCAGGACAGTCAGGGATACACAGTGGAACCCTATCTCAAACAAATTGACACCTCTCTTCTaGCCCACCAGACAGCTGAGG | + |
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Preference number: 4 (lower is better) Translates to: RASFRTVRDTQWNPISNKLTPLF*PTRQLR Trigger: CCTCAGCTGTCTGGTGGGCCAGAAGAGAGGTGTCAA...TTTGTTTGAGATAGGGTTCCACTGTGTATCCCTGACTGTCCTGAAACTTGCTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| CDS-3UTR GCA 90 bp | AGATTTGAATTTGAGTCCAGCCTGGTCTACAGAGCAAGTTTCAGGACAGTCAGGTACAAACACCTTCCATaGACTCATTCACAGACTCAT | + |
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Preference number: 4 (lower is better) Translates to: RFEFESSLVYRASFRTVRYKHLP*THSQTH Trigger: ATGAGTCTGTGAATGAGTGCATGGAAGGTGTTTGTA...CCTGACTGTCCTGAAACTTGCTCTGTAGACCAGGCTGGACTCAAATTCAAATCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| CDS-3UTR GCA 90 bp | TCTGAAACCTCACACCAACGAAACAAAACAAGCCCTGTTTACACAGGTAGGACTTACAAACACCTTCCATaGACTCATTCACAGACTCAT | + |
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Preference number: 4 (lower is better) Translates to: SETSHQRNKTSPVYTGRTYKHLP*THSQTH Trigger: ATGAGTCTGTGAATGAGTGCATGGAAGGTGTTTGTA...AGTCCTACCTGTGTAAACAGGGCTTGTTTTGTTTCGTTGGTGTGAGGTTTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218740.2 |
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| CDS-3UTR CCA 90 bp | CTTCAGAGTGACAAGATCATTCACGGTTCATGTCAGACATTCAATCTTGGCTTGTCTTTGTTATACGGCTaGTATGTCTGTGTATCAGCT | + |
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Preference number: 4 (lower is better) Translates to: LQSDKIIHGSCQTFNLGLSLLYG*YVCVSA Trigger: AGCTGATACACAGACATACCAGCCGTATAACAAAGA...CAAGCCAAGATTGAATGTCTGACATGAACCGTGAATGATCTTGTCACTCTGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| CDS-3UTR GCA 90 bp | GGCTTGAGTGTAACAACGTTGAAACAGGATCGCTATCATACAAAAGGTTCACTATACAAACACCTTCCATaGACTCATTCACAGACTCAT | + |
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Preference number: 4 (lower is better) Translates to: GLSVTTLKQDRYHTKGSLYKHLP*THSQTH Trigger: ATGAGTCTGTGAATGAGTGCATGGAAGGTGTTTGTA...TAGTGAACCTTTTGTATGATAGCGATCCTGTTTCAACGTTGTTACACTCAAGCC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| CDS-3UTR CAA 90 bp | GGCTTGAGTGTAACAACGTTGAAACAGGATCGCTATCATACAAAAGGTTCACTATTACTTCCCAGCCTGTaGGGCCTGCCGACGGAGGAG | + |
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Preference number: 5 (lower is better) Translates to: GLSVTTLKQDRYHTKGSLLLPSL*GLPTEE Trigger: CTCCTCCGTCGGCAGGCCCAACAGGCTGGGAAGTAA...TAGTGAACCTTTTGTATGATAGCGATCCTGTTTCAACGTTGTTACACTCAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| CDS-3UTR CAA 90 bp | AGAGCAAGTTTCAGGACAGTCAGGGATACACAGTGGAACCCTATCTCAAACAAAGTGATGGAAGGGCTGTaGGGATTCATCCTCTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: RASFRTVRDTQWNPISNKVMEGL*GFILFR Trigger: TCTGAAGAGGATGAATCCCAACAGCCCTTCCATCAC...TTTGTTTGAGATAGGGTTCCACTGTGTATCCCTGACTGTCCTGAAACTTGCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000218364.2 |
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| CDS-3UTR CAA 90 bp | ACGTTGAAACAGGATCGCTATCATACAAAAGGTTCACTACAGCACGCTGTATGTGTGATGGAAGGGCTGTaGGGATTCATCCTCTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: TLKQDRYHTKGSLQHAVCVMEGL*GFILFR Trigger: TCTGAAGAGGATGAATCCCAACAGCCCTTCCATCAC...ACATACAGCGTGCTGTAGTGAACCTTTTGTATGATAGCGATCCTGTTTCAACGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021559.14 |
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| CDS-3UTR CAA 90 bp | ACCTCACACCAACGAAACAAAACAAGCCCTGTTTACACAGGTAGGACTAAATTAGTGATGGAAGGGCTGTaGGGATTCATCCTCTTCAGA | + |
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Preference number: 5 (lower is better) Translates to: TSHQRNKTSPVYTGRTKLVMEGL*GFILFR Trigger: TCTGAAGAGGATGAATCCCAACAGCCCTTCCATCAC...TAATTTAGTCCTACCTGTGTAAACAGGGCTTGTTTTGTTTCGTTGGTGTGAGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000218740.2 |
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