Pregenerated sensors for ERG28 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021252Ensembl transcript IDs: ENSMUST00000021676.12
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCCAGTCTATGTGCTCAGGACCTTGAAGCAGCCCTTGCCCGCGGCTaGTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTATGTTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: PSLCAQDLEAALARG*SGQAAAAASQLCSH Trigger: GTGGGAACATAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCAAGGGCTGCTTCAAGGTCCTGAGCACATAGACTGGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR-3UTR CCA 90 bp | GGTCCTGCTCATGAGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCCTGGGCCCTGCCCGCGGCTGCTCTaGGCAGGCAGCAGCTGCGGC | + |
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Preference number: 2 (lower is better) Translates to: GPAHEGSPSQKNCLSPGPCPRLL*AGSSCG Trigger: GCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCA...GGGCCCAGGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR-3UTR TCA 90 bp | CCTTGCCCGCGGCTGCTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTATGTTCAGGATAGAGGGTGAATaGAGAAGACAGTGGAGGTGG | + |
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Preference number: 2 (lower is better) Translates to: PCPRLLWAGSSCGFTVMFRIEGE*RRQWRW Trigger: CCACCTCCACTGTCTTCTTCATTCACCCTCTATCCT...GAACATAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCAAGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR-3UTR CCA 90 bp | ACTGCCTGTCCCCTGGGCCCAGCAATAGAAAGGAGCCCAGTCTATGTGCTCAGGAGAAGACAGTGGAGGTaGAAGACGATGTTTCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: TACPLGPAIERSPVYVLRRRQWR*KTMFQS Trigger: GCTCTGAAACATCGTCTTCCACCTCCACTGTCTTCT...CCTGAGCACATAGACTGGGCTCCTTTCTATTGCTGGGCCCAGGGGACAGGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR-3UTR TCA 90 bp | GAGCCTGGTCCTGCTCATGAGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCCTTTTAAGGATAGAGGGTaGATGAAGAAGACAGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: EPGPAHEGSPSQKNCLSPFKDRG*MKKTVE Trigger: CTCCACTGTCTTCTTCATTCACCCTCTATCCTTAAA...AGGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACCAGGCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR GCA 72 bp | TGTGCTCAGGACCTTGAAGCAGCCCTTGCCCGCGGCTaGTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTA | + |
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Preference number: 3 (lower is better) Translates to: CAQDLEAALARG*SGQAAAAASQL Trigger: TAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCAAGGGCTGCTTCAAGGTCCTGAGCACA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR-3UTR CAA 90 bp | GAGCCTGGTCCTGCTCATGAGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCCTACCTTGAAGCAGCCCTaGCCCGCGGCTGCTCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: EPGPAHEGSPSQKNCLSPTLKQP*PAAALG Trigger: GCCCAGAGCAGCCGCGGGCAAGGGCTGCTTCAAGGT...AGGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACCAGGCTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR TCA 72 bp | CCACCTGTAGATAAAAGAGGAGCCTGGTCCTGCTCATaGGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCC | + |
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Preference number: 3 (lower is better) Translates to: PPVDKRGAWSCS*GQSFSEELPVP Trigger: GGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACCAGGCTCCTCTTTTATCTACAGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| 3UTR TCA 72 bp | GATGCAGCCAAACAGAAATGGTTTAAGGATAGAGGGTaGATGAAGAAGACAGTGGAGGTGGAAGACGATGTT | + |
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Preference number: 3 (lower is better) Translates to: DAAKQKWFKDRG*MKKTVEVEDDV Trigger: AACATCGTCTTCCACCTCCACTGTCTTCTTCATTCACCCTCTATCCTTAAACCATTTCTGTTTGGCTGCATC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CCA 90 bp | TTGCCCGCGGCTGCTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTATGTTCCCTGGTCTCGGAAGCTCTaGAGTGTGTTCCCCATGGCT | + |
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Preference number: 4 (lower is better) Translates to: LPAAALGRQQLRLHSYVPWSRKL*SVFPMA Trigger: AGCCATGGGGAACACACTCCAGAGCTTCCGAGACCA...GGGAACATAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCAA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CCA 90 bp | TTGCCCGCGGCTGCTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTATGTTCCCGCCATTCACAAGGTTTaGCTTGCCAGTGTAGAGCTT | + |
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Preference number: 4 (lower is better) Translates to: LPAAALGRQQLRLHSYVPAIHKV*LASVEL Trigger: AAGCTCTACACTGGCAAGCCAAACCTTGTGAATGGC...GGGAACATAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CCA 90 bp | CCTTGCCCGCGGCTGCTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTATGTTCTGTTGTGGATGTCAATaGCACAGAGGCAGCGAATCA | + |
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Preference number: 4 (lower is better) Translates to: PCPRLLWAGSSCGFTVMFCCGCQ*HRGSES Trigger: TGATTCGCTGCCTCTGTGCCATTGACATCCACAACA...GAACATAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAGCCGCGGGCAAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CCA 90 bp | GAGCCTGGTCCTGCTCATGAGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCCTCCAAAGGTCCGGGCTTaGAGGCCATTCACAAGGTTT | + |
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Preference number: 4 (lower is better) Translates to: EPGPAHEGSPSQKNCLSPPKVRA*RPFTRF Trigger: AAACCTTGTGAATGGCCTCCAAGCCCGGACCTTTGG...AGGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACCAGGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR TCA 90 bp | GGTCCTGCTCATGAGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCCTGGGCCCGGAATGTCCACAGTGTaGTGTGATAGAGTGTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: GPAHEGSPSQKNCLSPGPGMSTV*CDRVFC Trigger: ACAAAACACTCTATCACATCACACTGTGGACATTCC...GGGCCCAGGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR GCA 90 bp | ACTGCCTGTCCCCTGGGCCCAGCAATAGAAAGGAGCCCAGTCTATGTGCTCAGGTCACAAGGTTTGGCTTaGCAGTGTAGAGCTTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: TACPLGPAIERSPVYVLRSQGLA*QCRASR Trigger: ACGAGAAGCTCTACACTGGCAAGCCAAACCTTGTGA...CCTGAGCACATAGACTGGGCTCCTTTCTATTGCTGGGCCCAGGGGACAGGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR GCA 90 bp | TTATGTTCCCACCACAACAGATCAAGGAATGCAGAGAAAAGCAAAAGACTGGAAGGAGCCCGACCAGCATaGCCAGGATTGAGAAACTTG | + |
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Preference number: 4 (lower is better) Translates to: LCSHHNRSRNAEKSKRLEGARPA*PGLRNL Trigger: CAAGTTTCTCAATCCTGGGCATGCTGGTCGGGCTCC...TTCCAGTCTTTTGCTTTTCTCTGCATTCCTTGATCTGTTGTGGTGGGAACATAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CAA 90 bp | ACTGCCTGTCCCCTGGGCCCAGCAATAGAAAGGAGCCCAGTCTATGTGCTCAGGCCCAAAGGTCCGGGCTaGGAGGCCATTCACAAGGTT | + |
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Preference number: 5 (lower is better) Translates to: TACPLGPAIERSPVYVLRPKGPG*EAIHKV Trigger: AACCTTGTGAATGGCCTCCAAGCCCGGACCTTTGGG...CCTGAGCACATAGACTGGGCTCCTTTCTATTGCTGGGCCCAGGGGACAGGCAGT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CAA 90 bp | CTGCTCTGGGCAGGCAGCAGCTGCGGCTTCACAGTTATGTTCCCACCACAACAGGGCCATTCACAAGGTTaGGCTTGCCAGTGTAGAGCT | + |
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Preference number: 5 (lower is better) Translates to: LLWAGSSCGFTVMFPPQQGHSQG*ACQCRA Trigger: AGCTCTACACTGGCAAGCCAAACCTTGTGAATGGCC...CTGTTGTGGTGGGAACATAACTGTGAAGCCGCAGCTGCTGCCTGCCCAGAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS-3UTR CAA 90 bp | GAGCCTGGTCCTGCTCATGAGGGCAGTCCTTCTCAGAAGAACTGCCTGTCCCCTCCAGCATGCCCAGGATaGAGAAACTTGCTACCATCA | + |
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Preference number: 5 (lower is better) Translates to: EPGPAHEGSPSQKNCLSPPACPG*RNLLPS Trigger: TGATGGTAGCAAGTTTCTCAATCCTGGGCATGCTGG...AGGGGACAGGCAGTTCTTCTGAGAAGGACTGCCCTCATGAGCAGGACCAGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS TCA 90 bp | ACTCTGAGAGGAAGTGTCCCAGGGCGAGGAGGAATGTCCACAGTGTaGTGTGATAGAGTGTTTTGTTGTGGATGTCAATGGCACAGAGGC | + |
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Preference number: 5 (lower is better) Translates to: TLRGSVPGRGGMSTV*CDRVFCCGCQWHRG Trigger: GCCTCTGTGCCATTGACATCCACAACAAAACACTCTATCACATCACACTGTGGACATTCCTCCTCGCCCTGGGACACTTCCTCTCAGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS CCA 90 bp | GGATTGAGAAACTTGCTACCATCAGGGGTGCCAGCACACCAACTGTaGGAGCTGCTGTTCCAAATACAAACAACTCTGAGAGGAAGTGTC | + |
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Preference number: 5 (lower is better) Translates to: GLRNLLPSGVPAHQL*ELLFQIQTTLRGSV Trigger: GACACTTCCTCTCAGAGTTGTTTGTATTTGGAACAGCAGCTCCCACAGTTGGTGTGCTGGCACCCCTGATGGTAGCAAGTTTCTCAATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS GCA 72 bp | CTGGTTCTGCCTCTAGGTACCGGAGCCCGACCAGCATaGCCAGGATTGAGAAACTTGCTACCATCAGGGGTG | + |
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Preference number: 6 (lower is better) Translates to: LVLPLGTGARPA*PGLRNLLPSGV Trigger: CACCCCTGATGGTAGCAAGTTTCTCAATCCTGGGCATGCTGGTCGGGCTCCGGTACCTAGAGGCAGAACCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS TCA 72 bp | GGAAGTGTCCCAGGGCGAGGAGGAATGTCCACAGTGTaGTGTGATAGAGTGTTTTGTTGTGGATGTCAATGG | + |
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Preference number: 6 (lower is better) Translates to: GSVPGRGGMSTV*CDRVFCCGCQW Trigger: CCATTGACATCCACAACAAAACACTCTATCACATCACACTGTGGACATTCCTCCTCGCCCTGGGACACTTCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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| CDS CCA 72 bp | AACTTGCTACCATCAGGGGTGCCAGCACACCAACTGTaGGAGCTGCTGTTCCAAATACAAACAACTCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: NLLPSGVPAHQL*ELLFQIQTTLR Trigger: TCTCAGAGTTGTTTGTATTTGGAACAGCAGCTCCCACAGTTGGTGTGCTGGCACCCCTGATGGTAGCAAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021676.12 |
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