Pregenerated sensors for ERFL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000108367

Ensembl transcript IDs: ENSMUST00000206705.3

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCAGGGGTACTCAGGGAAGGCGCGGCCGTAAGGACCCAGCAGGCTaGGCGGCTTGGAGTAGCCTGTGGCACCAGAACCCAGGAATGGGA	+
Preference number: 5 (lower is better) Translates to: SRGTQGRRGRKDPAG*AAWSSLWHQNPGMG Trigger: TCCCATTCCTGGGTTCTGGTGCCACAGGCTACTCCAAGCCGCCCAGCCTGCTGGGTCCTTACGGCCGCGCCTTCCCTGAGTACCCCTGGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206705.3
CDS CCA 72 bp	AGGCGCGGCCGTAAGGACCCAGCAGGCTGGGCGGCTTaGAGTAGCCTGTGGCACCAGAACCCAGGAATGGGA	+
Preference number: 6 (lower is better) Translates to: RRGRKDPAGWAA*SSLWHQNPGMG Trigger: TCCCATTCCTGGGTTCTGGTGCCACAGGCTACTCCAAGCCGCCCAGCCTGCTGGGTCCTTACGGCCGCGCCT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206705.3
CDS CCA 72 bp	ACTCAGGGAAGGCGCGGCCGTAAGGACCCAGCAGGCTaGGCGGCTTGGAGTAGCCTGTGGCACCAGAACCCA	+
Preference number: 6 (lower is better) Translates to: TQGRRGRKDPAG*AAWSSLWHQNP Trigger: TGGGTTCTGGTGCCACAGGCTACTCCAAGCCGCCCAGCCTGCTGGGTCCTTACGGCCGCGCCTTCCCTGAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000206705.3
CDS CCA 72 bp	AGGGGAGCCTGTGGCAGCAGCAGCCACATCCAGCAGTaGGTAATTAACAAGTACAACTTTGCTGAAGTTGAA	+
Preference number: 6 (lower is better) Translates to: RGACGSSSHIQQ*VINKYNFAEVE Trigger: TTCAACTTCAGCAAAGTTGTACTTGTTAATTACCCACTGCTGGATGTGGCTGCTGCTGCCACAGGCTCCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000206705.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu