Pregenerated sensors for ERFE (Mus musculus)
Ensembl gene IDs: ENSMUSG00000047443Ensembl transcript IDs: ENSMUST00000086861.12, ENSMUST00000190998.2
Found 114 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCCAGGGAGTCAGGACCCAGGCCAGCACAGTGCTTCCTGGTAGGGTaGGTACCAGCCATACTGAGAATCGGGCCAGGCCTGCTCACGGAC | + |
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Preference number: 1 (lower is better) Translates to: ARESGPRPAQCFLVG*VPAILRIGPGLLTD Trigger: GTCCGTGAGCAGGCCTGGCCCGATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGGTCCTGACTCCCTGGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR CCA 90 bp | CCAGGCCTGCTCACGGACAGCTCCCCCAGGCACCTGTCGCTCTGTTaGAAGCCTGATTTGGGGACAGGTCCGATTATAGAAGGGCGTTCT | + |
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Preference number: 1 (lower is better) Translates to: PGLLTDSSPRHLSLC*KPDLGTGPIIEGRS Trigger: AGAACGCCCTTCTATAATCGGACCTGTCCCCAAATCAGGCTTCCAACAGAGCGACAGGTGCCTGGGGGAGCTGTCCGTGAGCAGGCCTGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR CCA 90 bp | TCCTCCCAAGCTGCCATTCAGCCAGACCACCCACCCCCTTTACAATaGAGTCTCAGGAGGGAAACTTGTGAGCAGGTGCCCTGTGTGGAT | + |
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Preference number: 1 (lower is better) Translates to: SSQAAIQPDHPPPLQ*SLRRETCEQVPCVD Trigger: ATCCACACAGGGCACCTGCTCACAAGTTTCCCTCCTGAGACTCCATTGTAAAGGGGGTGGGTGGTCTGGCTGAATGGCAGCTTGGGAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 90 bp | TGGACTGCTGGCTGTCAGCTCTTTCATCAGCAGGCCATCAGGACTTaGAAGGTCCAGCCCTCTCCACTGCCTATTAGGATCTGGTCCCAC | + |
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Preference number: 1 (lower is better) Translates to: WTAGCQLFHQQAIRT*KVQPSPLPIRIWSH Trigger: GTGGGACCAGATCCTAATAGGCAGTGGAGAGGGCTGGACCTTCCAAGTCCTGATGGCCTGCTGATGAAAGAGCTGACAGCCAGCAGTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 90 bp | CTGCTAGGCCAAGAGATCCCAAAGCAGCTGGTGGGTGTGGACTGCTaGCTGTCAGCTCTTTCATCAGCAGGCCATCAGGACTTGGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: LLGQEIPKQLVGVDC*LSALSSAGHQDLEG Trigger: ACCTTCCAAGTCCTGATGGCCTGCTGATGAAAGAGCTGACAGCCAGCAGTCCACACCCACCAGCTGCTTTGGGATCTCTTGGCCTAGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR GCA 90 bp | CTTCCATCACCTCTGCAGGAATACAGTGGCTATGGTAAGAGGTATTaGGATGGCCAGTGTGTGCAGAGGTCCAGTGGGCTTCCTTGTGCA | + |
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Preference number: 1 (lower is better) Translates to: LPSPLQEYSGYGKRY*DGQCVQRSSGLPCA Trigger: TGCACAAGGAAGCCCACTGGACCTCTGCACACACTGGCCATCGCAATACCTCTTACCATAGCCACTGTATTCCTGCAGAGGTGATGGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR GCA 90 bp | GGATGGTCCCAGAAGAGCCAAGCAGGGCTTAGGATATTCACAAATTaGTGCTGGTTCTGGGAGAGCCTGCTTCCATCACCTCTGCAGGAA | + |
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Preference number: 1 (lower is better) Translates to: GWSQKSQAGLRIFTN*CWFWESLLPSPLQE Trigger: TTCCTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTTCTGGGACCATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR TCA 90 bp | GCATTTCTCCCTTGCTTTCCAGAGCTTACCCCTCATGGTCTTTGGTaGAGTGAGCTGGAAAGAGGTCATGCTTCTCGGGTCTGCCCTTCA | + |
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Preference number: 1 (lower is better) Translates to: AFLPCFPELTPHGLW*SELERGHASRVCPS Trigger: TGAAGGGCAGACCCGAGAAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTGGAAAGCAAGGGAGAAATGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR GCA 90 bp | TGGTCCCAGAAGAGCCAAGCAGGGCTTAGGATATTCACAAATTGCTaGTGGTTCTGGGAGAGCCTGCTTCCATCACCTCTGCAGGAATAC | + |
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Preference number: 1 (lower is better) Translates to: WSQKSQAGLRIFTNC*WFWESLLPSPLQEY Trigger: GTATTCCTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTTCTGGGACCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR TCA 90 bp | TCTCCCTTGCTTTCCAGAGCTTACCCCTCATGGTCTTTGGTGAAGTaGGCTGGAAAGAGGTCATGCTTCTCGGGTCTGCCCTTCATTGTT | + |
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Preference number: 1 (lower is better) Translates to: SPLLSRAYPSWSLVK*AGKRSCFSGLPFIV Trigger: AACAATGAAGGGCAGACCCGAGAAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTGGAAAGCAAGGGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR CCA 90 bp | TCCCAGAAGAGCCAAGCAGGGCTTAGGATATTCACAAATTGCTGCTaGTTCTGGGAGAGCCTGCTTCCATCACCTCTGCAGGAATACAGT | + |
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Preference number: 1 (lower is better) Translates to: SQKSQAGLRIFTNCC*FWESLLPSPLQEYS Trigger: ACTGTATTCCTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTTCTGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 90 bp | AAGAGCCAAGCAGGGCTTAGGATATTCACAAATTGCTGCTGGTTCTaGGAGAGCCTGCTTCCATCACCTCTGCAGGAATACAGTGGCTAT | + |
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Preference number: 1 (lower is better) Translates to: KSQAGLRIFTNCCWF*ESLLPSPLQEYSGY Trigger: ATAGCCACTGTATTCCTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 90 bp | TACAATGGAGTCTCAGGAGGGAAACTTGTGAGCAGGTGCCCTGTGTaGATAACTGTGCTCAAACTTTGGTTTAGTGTGTGGGCCCTAGCA | + |
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Preference number: 1 (lower is better) Translates to: YNGVSGGKLVSRCPV*ITVLKLWFSVWALA Trigger: TGCTAGGGCCCACACACTAAACCAAAGTTTGAGCACAGTTATCCACACAGGGCACCTGCTCACAAGTTTCCCTCCTGAGACTCCATTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 90 bp | GACATGTCTGTGCCCACTGGATACAAAATGAAATCCAGAAAAGGGTaGGGTGTTTCCACCTCATGTCCTTATCAGAGTGCCAGGGAGTCA | + |
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Preference number: 1 (lower is better) Translates to: DMSVPTGYKMKSRKG*GVSTSCPYQSARES Trigger: TGACTCCCTGGCACTCTGATAAGGACATGAGGTGGAAACACCCCACCCTTTTCTGGATTTCATTTTGTATCCAGTGGGCACAGACATGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR-3UTR GCA 90 bp | AGCACTCCTGCTAGGCCAAGAGATCCCAAAGCAGCTGGTGGGTGTGGACTGCTGTGCTCACCAGGGGCCTaGAGGTCATCGTGCTTACCC | + |
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Preference number: 2 (lower is better) Translates to: STPARPRDPKAAGGCGLLCSPGA*RSSCLP Trigger: GGGTAAGCACGATGACCTGCAGGCCCCTGGTGAGCA...CAGCAGTCCACACCCACCAGCTGCTTTGGGATCTCTTGGCCTAGCAGGAGTGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR GCA 90 bp | GTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCGGGCCAGGCCTGCTCCACTGTCACCACTCTaGTTGGTAAGGGTAAGAGCC | + |
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Preference number: 2 (lower is better) Translates to: VLPGRVGTSHTENRARPAPLSPL*LVRVRA Trigger: GGCTCTTACCCTTACCAAGCAGAGTGGTGACAGTGG...AGCAGGCCTGGCCCGATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 90 bp | GAGGTATTGCGATGGCCAGTGTGTGCAGAGGTCCAGTGGGCTTCCTaGTGCACAGGGCCACTGTCACCACTCTGCTTGGTAAGGGTAAGA | + |
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Preference number: 2 (lower is better) Translates to: EVLRWPVCAEVQWAS*CTGPLSPLCLVRVR Trigger: TCTTACCCTTACCAAGCAGAGTGGTGACAGTGGCCCTGTGCACAAGGAAGCCCACTGGACCTCTGCACACACTGGCCATCGCAATACCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR GCA 90 bp | CTCATGGTCTTTGGTGAAGTGAGCTGGAAAGAGGTCATGCTTCTCGGGTCTGCCCAGTGGGCTTCCTTGTaGACAGGGCCACTGTCACCA | + |
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Preference number: 2 (lower is better) Translates to: LMVFGEVSWKEVMLLGSAQWASL*TGPLSP Trigger: TGGTGACAGTGGCCCTGTGCACAAGGAAGCCCACTG...GGCAGACCCGAGAAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR CCA 90 bp | TCACAAATTGCTGCTGGTTCTGGGAGAGCCTGCTTCCATCACCTCTGCAGGAATTGTGCAGAGGTCCAGTaGGCTTCCTTGTGCACAGGG | + |
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Preference number: 2 (lower is better) Translates to: SQIAAGSGRACFHHLCRNCAEVQ*ASLCTG Trigger: CCCTGTGCACAAGGAAGCCCACTGGACCTCTGCACA...ATTCCTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR CCA 90 bp | AAACCACTAAAGCAGGCTGCAGGGTGGCAGCCCTTCTCATGGGAAGAGCCCTCATTCACAAATTGCTGCTaGTTCTGGGAGAGCCTGCTT | + |
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Preference number: 2 (lower is better) Translates to: KPLKQAAGWQPFSWEEPSFTNCC*FWESLL Trigger: AAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAA...TGAGGGCTCTTCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR GCA 90 bp | GCCATTCAGCCAGACCACCCACCCCCTTTACAATGGAGTCTCAGGAGGGAAACTATATTCACAAATTGCTaGTGGTTCTGGGAGAGCCTG | + |
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Preference number: 2 (lower is better) Translates to: AIQPDHPPPLQWSLRRETIFTNC*WFWESL Trigger: CAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATAT...AGTTTCCCTCCTGAGACTCCATTGTAAAGGGGGTGGGTGGTCTGGCTGAATGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 90 bp | AAGGTCCAGCCCTCTCCACTGCCTATTAGGATCTGGTCCCACATTTaGTTAAAAATGGGAAAACCACTAAAGCAGGCTGCAGGGTGGCAG | + |
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Preference number: 2 (lower is better) Translates to: KVQPSPLPIRIWSHI*LKMGKPLKQAAGWQ Trigger: CTGCCACCCTGCAGCCTGCTTTAGTGGTTTTCCCATTTTTAACAAAATGTGGGACCAGATCCTAATAGGCAGTGGAGAGGGCTGGACCTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR GCA 90 bp | ATAGAAGGGCGTTCTGATGTGGTAGCTTCATCCTGGTGTCAGCTGAAAGATGAAAAACTTGTGAGCAGGTaGCCTGTGTGGATAACTGTG | + |
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Preference number: 2 (lower is better) Translates to: IEGRSDVVASSWCQLKDEKLVSR*PVWITV Trigger: CACAGTTATCCACACAGGGCACCTGCTCACAAGTTT...TTCATCTTTCAGCTGACACCAGGATGAAGCTACCACATCAGAACGCCCTTCTAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR CCA 90 bp | AGGGCTTTGTGTGATCCATTACATAAATATATTCTGCCTAGCAATATGACACAATGCTACCATGTAAGCTaGATGGTCCCAGAAGAGCCA | + |
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Preference number: 2 (lower is better) Translates to: RALCDPLHKYILPSNMTQCYHVS*MVPEEP Trigger: TGGCTCTTCTGGGACCATCCAGCTTACATGGTAGCA...TTGTGTCATATTGCTAGGCAGAATATATTTATGTAATGGATCACACAAAGCCCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | TCAGGACCCAGGCCAGCACAGTGCTTCCTGGTAGGGTaGGTACCAGCCATACTGAGAATCGGGCCAGGCCTG | + |
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Preference number: 3 (lower is better) Translates to: SGPRPAQCFLVG*VPAILRIGPGL Trigger: CAGGCCTGGCCCGATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGGTCCTGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR TCA 72 bp | CAGCTCCCCCAGGCACCTGTCGCTCTGTTGGAAGCCTaGTTTGGGGACAGGTCCGATTATAGAAGGGCGTTC | + |
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Preference number: 3 (lower is better) Translates to: QLPQAPVALLEA*FGDRSDYRRAF Trigger: GAACGCCCTTCTATAATCGGACCTGTCCCCAAATCAGGCTTCCAACAGAGCGACAGGTGCCTGGGGGAGCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR GCA 72 bp | GGCCAAGAGATCCCAAAGCAGCTGGTGGGTGTGGACTaGTGGCTGTCAGCTCTTTCATCAGCAGGCCATCAG | + |
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Preference number: 3 (lower is better) Translates to: GQEIPKQLVGVD*WLSALSSAGHQ Trigger: CTGATGGCCTGCTGATGAAAGAGCTGACAGCCAGCAGTCCACACCCACCAGCTGCTTTGGGATCTCTTGGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | GCTGCCATTCAGCCAGACCACCCACCCCCTTTACAATaGAGTCTCAGGAGGGAAACTTGTGAGCAGGTGCCC | + |
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Preference number: 3 (lower is better) Translates to: AAIQPDHPPPLQ*SLRRETCEQVP Trigger: GGGCACCTGCTCACAAGTTTCCCTCCTGAGACTCCATTGTAAAGGGGGTGGGTGGTCTGGCTGAATGGCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR GCA 72 bp | AGGATGGCAAAGGAGTGTAGCTCCAGTATGTTAGGGTaGTCACCAGGGGCCTGCAGGTCATCGTGCTTACCC | + |
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Preference number: 3 (lower is better) Translates to: RMAKECSSSMLG*SPGACRSSCLP Trigger: GGGTAAGCACGATGACCTGCAGGCCCCTGGTGAGCACCCTAACATACTGGAGCTACACTCCTTTGCCATCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | CTCACGGACAGCTCCCCCAGGCACCTGTCGCTCTGTTaGAAGCCTGATTTGGGGACAGGTCCGATTATAGAA | + |
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Preference number: 3 (lower is better) Translates to: LTDSSPRHLSLC*KPDLGTGPIIE Trigger: TTCTATAATCGGACCTGTCCCCAAATCAGGCTTCCAACAGAGCGACAGGTGCCTGGGGGAGCTGTCCGTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR-3UTR CAA 90 bp | ACTTGGAAGGTCCAGCCCTCTCCACTGCCTATTAGGATCTGGTCCCACATTTTGGTCCAGTGGGCTTCCTaGTGCACAGGGCCACTGTCA | + |
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Preference number: 3 (lower is better) Translates to: TWKVQPSPLPIRIWSHILVQWAS*CTGPLS Trigger: TGACAGTGGCCCTGTGCACAAGGAAGCCCACTGGAC...CAAAATGTGGGACCAGATCCTAATAGGCAGTGGAGAGGGCTGGACCTTCCAAGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | GGCTGTCAGCTCTTTCATCAGCAGGCCATCAGGACTTaGAAGGTCCAGCCCTCTCCACTGCCTATTAGGATC | + |
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Preference number: 3 (lower is better) Translates to: GCQLFHQQAIRT*KVQPSPLPIRI Trigger: GATCCTAATAGGCAGTGGAGAGGGCTGGACCTTCCAAGTCCTGATGGCCTGCTGATGAAAGAGCTGACAGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR CAA 90 bp | CAGAGCTTACCCCTCATGGTCTTTGGTGAAGTGAGCTGGAAAGAGGTCATGCTTCCTGTGCAGGCTGAGTaGTCCCAGGTAGTGAGTGGC | + |
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Preference number: 3 (lower is better) Translates to: QSLPLMVFGEVSWKEVMLPVQAE*SQVVSG Trigger: GCCACTCACTACCTGGGACAACTCAGCCTGCACAGG...AAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR TCA 72 bp | CTTTCCAGAGCTTACCCCTCATGGTCTTTGGTGAAGTaGGCTGGAAAGAGGTCATGCTTCTCGGGTCTGCCC | + |
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Preference number: 3 (lower is better) Translates to: LSRAYPSWSLVK*AGKRSCFSGLP Trigger: GGGCAGACCCGAGAAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTGGAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR CCA 72 bp | TTAAAAATGGGAAAACCACTAAAGCAGGCTGCAGGGTaGCAGCCCTTCTCATGGGAAGAGCCCTCAGCCAGC | + |
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Preference number: 3 (lower is better) Translates to: LKMGKPLKQAAG*QPFSWEEPSAS Trigger: GCTGGCTGAGGGCTCTTCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTTTCCCATTTTTAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR-3UTR CAA 90 bp | ATAGAAGGGCGTTCTGATGTGGTAGCTTCATCCTGGTGTCAGCTGAAAGATGAACCCTCTGTCCCAGGCTaGAGCACTCCTGCTAGGCCA | + |
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Preference number: 3 (lower is better) Translates to: IEGRSDVVASSWCQLKDEPSVPG*STPARP Trigger: TGGCCTAGCAGGAGTGCTCAAGCCTGGGACAGAGGG...TTCATCTTTCAGCTGACACCAGGATGAAGCTACCACATCAGAACGCCCTTCTAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | AGCCAAGCAGGGCTTAGGATATTCACAAATTGCTGCTaGTTCTGGGAGAGCCTGCTTCCATCACCTCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: SQAGLRIFTNCC*FWESLLPSPLQ Trigger: CTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | CAGAGCTTACCCCTCATGGTCTTTGGTGAAGTGAGCTaGAAAGAGGTCATGCTTCTCGGGTCTGCCCTTCAT | + |
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Preference number: 3 (lower is better) Translates to: QSLPLMVFGEVS*KEVMLLGSALH Trigger: ATGAAGGGCAGACCCGAGAAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR GCA 72 bp | AAGAGCCAAGCAGGGCTTAGGATATTCACAAATTGCTaGTGGTTCTGGGAGAGCCTGCTTCCATCACCTCTG | + |
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Preference number: 3 (lower is better) Translates to: KSQAGLRIFTNC*WFWESLLPSPL Trigger: CAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR GCA 72 bp | CAGAAGAGCCAAGCAGGGCTTAGGATATTCACAAATTaGTGCTGGTTCTGGGAGAGCCTGCTTCCATCACCT | + |
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Preference number: 3 (lower is better) Translates to: QKSQAGLRIFTN*CWFWESLLPSP Trigger: AGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTTCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | GCAGGGCTTAGGATATTCACAAATTGCTGCTGGTTCTaGGAGAGCCTGCTTCCATCACCTCTGCAGGAATAC | + |
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Preference number: 3 (lower is better) Translates to: AGLRIFTNCCWF*ESLLPSPLQEY Trigger: GTATTCCTGCAGAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAAGCCCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | GGAACCCAGGTAGACAGTGTATGGTCCAAGAAGGTCTaGGCTTCCCTCTTAAGCACTAAGGACCTACAGTCA | + |
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Preference number: 3 (lower is better) Translates to: GTQVDSVWSKKV*ASLLSTKDLQS Trigger: TGACTGTAGGTCCTTAGTGCTTAAGAGGGAAGCCCAGACCTTCTTGGACCATACACTGTCTACCTGGGTTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | GTCTCAGGAGGGAAACTTGTGAGCAGGTGCCCTGTGTaGATAACTGTGCTCAAACTTTGGTTTAGTGTGTGG | + |
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Preference number: 3 (lower is better) Translates to: VSGGKLVSRCPV*ITVLKLWFSVW Trigger: CCACACACTAAACCAAAGTTTGAGCACAGTTATCCACACAGGGCACCTGCTCACAAGTTTCCCTCCTGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CCA 72 bp | GTGCCCACTGGATACAAAATGAAATCCAGAAAAGGGTaGGGTGTTTCCACCTCATGTCCTTATCAGAGTGCC | + |
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Preference number: 3 (lower is better) Translates to: VPTGYKMKSRKG*GVSTSCPYQSA Trigger: GGCACTCTGATAAGGACATGAGGTGGAAACACCCCACCCTTTTCTGGATTTCATTTTGTATCCAGTGGGCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR GCA 72 bp | TACAATGGAGTCTCAGGAGGGAAACTTGTGAGCAGGTaGCCTGTGTGGATAACTGTGCTCAAACTTTGGTTT | + |
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Preference number: 3 (lower is better) Translates to: YNGVSGGKLVSR*PVWITVLKLWF Trigger: AAACCAAAGTTTGAGCACAGTTATCCACACAGGGCACCTGCTCACAAGTTTCCCTCCTGAGACTCCATTGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | CCCAGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCAGGACCTGGTGGCCCTaGGGGTCCTGGCAGGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: PRPAQCFLVGWVPAILRIRTWWP*GSWQAK Trigger: CTTGGCCTGCCAGGACCCCCAGGGCCACCAGGTCCT...GATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR TCA 90 bp | TTAGGATATTCACAAATTGCTGCTGGTTCTGGGAGAGCCTGCTTCCATCACCTCGGCTGCGGGCGTGCATaGGTCCCCACGGGCTCCGCG | + |
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Preference number: 4 (lower is better) Translates to: LGYSQIAAGSGRACFHHLGCGRA*VPTGSA Trigger: CGCGGAGCCCGTGGGGACTCATGCACGCCCGCAGCC...GAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR GCA 90 bp | GCTTCTTCCTCCCAAGCTGCCATTCAGCCAGACCACCCACCCCCTTTACAATGGGAAGCCAGCCACAGGTaGGGTGTACTGGCCGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: ASSSQAAIQPDHPPPLQWEASHR*GVLAAG Trigger: ACCAGCGGCCAGTACACCGCACCTGTGGCTGGCTTC...CCATTGTAAAGGGGGTGGGTGGTCTGGCTGAATGGCAGCTTGGGAGGAAGAAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR GCA 90 bp | AAACCACTAAAGCAGGCTGCAGGGTGGCAGCCCTTCTCATGGGAAGAGCCCTCATGGCTGCTCGGTGAGTaGCACGTGCAGAGTGGCAGC | + |
|
Preference number: 4 (lower is better) Translates to: KPLKQAAGWQPFSWEEPSWLLGE*HVQSGS Trigger: GCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCA...TGAGGGCTCTTCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | ACCCAGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCGGCGCAAGCGACAGTaGAATGCGGCCTCCACACGT | + |
|
Preference number: 4 (lower is better) Translates to: TQASTVLPGRVGTSHTENRRKRQ*NAASTR Trigger: ACGTGTGGAGGCCGCATTCCACTGTCGCTTGCGCCG...ATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | CCCAGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCCGGTGTACTGGCCGCTaGTCAGATTCAAGCCTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: PRPAQCFLVGWVPAILRIRCTGR*SDSSLG Trigger: GCCCAGGCTTGAATCTGACCAGCGGCCAGTACACCG...GATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 72 bp | CGATGGCCAGTGTGTGCAGAGGTCCAGTGGGCTTCCTaGTGCACAGGGCCACTGTCACCACTCTGCTTGGTA | + |
|
Preference number: 4 (lower is better) Translates to: RWPVCAEVQWAS*CTGPLSPLCLV Trigger: TACCAAGCAGAGTGGTGACAGTGGCCCTGTGCACAAGGAAGCCCACTGGACCTCTGCACACACTGGCCATCG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR TCA 90 bp | CATACTGAGAATCGGGCCAGGCCTGCTCACGGACAGCTCCCCCAGGCACCTGTCGAGGACACCATTTACTaGGATGGTGAAGAGCTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: HTENRARPAHGQLPQAPVEDTIY*DGEELA Trigger: AGCGAGCTCTTCACCATCTCAGTAAATGGTGTCCTC...GACAGGTGCCTGGGGGAGCTGTCCGTGAGCAGGCCTGGCCCGATTCTCAGTATG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS-3UTR GCA 90 bp | AGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCGGGCTCTCGCTGCCGTACTaGGCCTTTCAGCAACAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: RPAQCFLVGWVPAILRIGLSLPY*AFQQQL Trigger: CAGCTGTTGCTGAAAGGCGCAGTACGGCAGCGAGAG...CCCGATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR GCA 90 bp | AGTGTGTGCAGAGGTCCAGTGGGCTTCCTTGTGCACAGGGCCACTGTCACCACTAGATGGCTCTCTCGCTaGCGTACTGCGCCTTTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: SVCRGPVGFLVHRATVTTRWLSR*RTAPFS Trigger: GCTGAAAGGCGCAGTACGGCAGCGAGAGAGCCATCT...AGTGGTGACAGTGGCCCTGTGCACAAGGAAGCCCACTGGACCTCTGCACACACT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | AAACCACTAAAGCAGGCTGCAGGGTGGCAGCCCTTCTCATGGGAAGAGCCCTCAAATGCCCCTGGGTCCTaGCTATCAAGCTCCTGGGCG | + |
|
Preference number: 4 (lower is better) Translates to: KPLKQAAGWQPFSWEEPSNAPGS*LSSSWA Trigger: CGCCCAGGAGCTTGATAGCCAGGACCCAGGGGCATT...TGAGGGCTCTTCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | AAAAATGGGAAAACCACTAAAGCAGGCTGCAGGGTGGCAGCCCTTCTCATGGGATGGCCCTGGGGGTCCTaGCAGGCCAAGCTTCAGCCT | + |
|
Preference number: 4 (lower is better) Translates to: KNGKTTKAGCRVAALLMGWPWGS*QAKLQP Trigger: AGGCTGAAGCTTGGCCTGCCAGGACCCCCAGGGCCA...TCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTTTCCCATTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | GGAGGGAAACTTGTGAGCAGGTGCCCTGTGTGGATAACTGTGCTCAAACTTTGGTGGGATAAAGGGGCCTaGGGGGCCCTGAGGACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: GGKLVSRCPVWITVLKLWWDKGA*GALRTW Trigger: CCAGGTCCTCAGGGCCCCCCAGGCCCCTTTATCCCA...CCAAAGTTTGAGCACAGTTATCCACACAGGGCACCTGCTCACAAGTTTCCCTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | ACCCAGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATTGCTGGCAGAGAGACTaGATGCAGATCAGCAGGCGC | + |
|
Preference number: 4 (lower is better) Translates to: TQASTVLPGRVGTSHTENCWQRD*MQISRR Trigger: GCGCCTGCTGATCTGCATCCAGTCTCTCTGCCAGCA...ATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | AAAAATGGGAAAACCACTAAAGCAGGCTGCAGGGTGGCAGCCCTTCTCATGGGAAAGCCTGGGCCCCGGTaGAAGGCTCCCTCAACTTCG | + |
|
Preference number: 4 (lower is better) Translates to: KNGKTTKAGCRVAALLMGKPGPR*KAPSTS Trigger: CGAAGTTGAGGGAGCCTTCCACCGGGGCCCAGGCTT...TCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTTTCCCATTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | GTCCAGTGGGCTTCCTTGTGCACAGGGCCACTGTCACCACTCTGCTTGGTAAGGCCTTTCAGCAACAGCTaGAACTCCTTCAGCAGAACC | + |
|
Preference number: 4 (lower is better) Translates to: VQWASLCTGPLSPLCLVRPFSNS*NSFSRT Trigger: GGTTCTGCTGAAGGAGTTCCAGCTGTTGCTGAAAGG...CCTTACCAAGCAGAGTGGTGACAGTGGCCCTGTGCACAAGGAAGCCCACTGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 72 bp | GATGAAGCAACTGGAGCTATCCCCTCTGTCCCAGGCTaGAGCACTCCTGCTAGGCCAAGAGATCCCAAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: DEATGAIPSVPG*STPARPRDPKA Trigger: TGCTTTGGGATCTCTTGGCCTAGCAGGAGTGCTCAAGCCTGGGACAGAGGGGATAGCTCCAGTTGCTTCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 72 bp | TCCCCCAGGCACCTGTCGCTCTGTTGGAAGCCTGATTaGGGGACAGGTCCGATTATAGAAGGGCGTTCTGAT | + |
|
Preference number: 4 (lower is better) Translates to: SPRHLSLCWKPD*GTGPIIEGRSD Trigger: ATCAGAACGCCCTTCTATAATCGGACCTGTCCCCAAATCAGGCTTCCAACAGAGCGACAGGTGCCTGGGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS-3UTR TCA 90 bp | CCCAGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCCATTTACTGAGATGGTaGAGAGCTCGCTGCTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: PRPAQCFLVGWVPAILRIHLLRW*RARCCS Trigger: AGAACAGCAGCGAGCTCTTCACCATCTCAGTAAATG...GATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS-3UTR CCA 90 bp | CAATGGAGTCTCAGGAGGGAAACTTGTGAGCAGGTGCCCTGTGTGGATAACTGTGTGCCACGTGCAGAGTaGCAGCAAGCGCATAGAAGC | + |
|
Preference number: 4 (lower is better) Translates to: QWSLRRETCEQVPCVDNCVPRAE*QQAHRS Trigger: GCTTCTATGCGCTTGCTGCCACTCTGCACGTGGCAC...ACAGTTATCCACACAGGGCACCTGCTCACAAGTTTCCCTCCTGAGACTCCATTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 72 bp | GGACCTACAGTCATTTCCTACCCTGTGCAGGCTGAGTaGTCCCAGGTAGTGAGTGGCCTGACTAGTTTGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GPTVISYPVQAE*SQVVSGLTSLL Trigger: CAGCAAACTAGTCAGGCCACTCACTACCTGGGACAACTCAGCCTGCACAGGGTAGGAAATGACTGTAGGTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR TCA 90 bp | ACCCAGGCCAGCACAGTGCTTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCATTTACTGAGATGGTaGAGAGCTCGCTGCTGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: TQASTVLPGRVGTSHTENHLLRW*RARCCS Trigger: AGAACAGCAGCGAGCTCTTCACCATCTCAGTAAATG...ATTCTCAGTATGGCTGGTACCCACCCTACCAGGAAGCACTGTGCTGGCCTGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS-3UTR GCA 90 bp | AAACCACTAAAGCAGGCTGCAGGGTGGCAGCCCTTCTCATGGGAAGAGCCCTCAATCCCCTTGTCACTCTaGTTGACGAACAGCATCCAA | + |
|
Preference number: 4 (lower is better) Translates to: KPLKQAAGWQPFSWEEPSIPLSL*LTNSIQ Trigger: TTGGATGCTGTTCGTCAAGCAGAGTGACAAGGGGAT...TGAGGGCTCTTCCCATGAGAAGGGCTGCCACCCTGCAGCCTGCTTTAGTGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | GCTGGATGGTCCCAGAAGAGCCAAGCAGGGCTTAGGATATTCACAAATTGCTGCTGTTGGTCCCTTTCTTaGCTGCTCGGTGAGTGCCAC | + |
|
Preference number: 4 (lower is better) Translates to: AGWSQKSQAGLRIFTNCCCWSLS*LLGECH Trigger: GTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACA...GCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTTCTGGGACCATCCAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | GTCTGGGCTTCCCTCTTAAGCACTAAGGACCTACAGTCATTTCCTACCCTGTGCAGGGAGGCATTGTGCTaGCAGAGAGACTGGATGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VWASLLSTKDLQSFPTLCREALC*QRDWMQ Trigger: CTGCATCCAGTCTCTCTGCCAGCACAATGCCTCCCT...GCACAGGGTAGGAAATGACTGTAGGTCCTTAGTGCTTAAGAGGGAAGCCCAGAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR TCA 90 bp | CAGAGCTTACCCCTCATGGTCTTTGGTGAAGTGAGCTGGAAAGAGGTCATGCTTAGGATAGCACTGAAGTaGGAGCCACTGCGTACCGTG | + |
|
Preference number: 4 (lower is better) Translates to: QSLPLMVFGEVSWKEVMLRIALK*EPLRTV Trigger: CACGGTACGCAGTGGCTCTCACTTCAGTGCTATCCT...AAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CCA 90 bp | GGAGGGAAACTTGTGAGCAGGTGCCCTGTGTGGATAACTGTGCTCAAACTTTGGCAAGCTTCAGCCTCCTaGCTTTGCTCCTCCTCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: GGKLVSRCPVWITVLKLWQASAS*LCSSSY Trigger: GTAAGAGGAGGAGCAAAGCCAGGAGGCTGAAGCTTG...CCAAAGTTTGAGCACAGTTATCCACACAGGGCACCTGCTCACAAGTTTCCCTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR TCA 90 bp | GCTGGATGGTCCCAGAAGAGCCAAGCAGGGCTTAGGATATTCACAAATTGCTGCTCCTCCTCTTACTGTTaGTCCCCTTGTCACTCTGCT | + |
|
Preference number: 4 (lower is better) Translates to: AGWSQKSQAGLRIFTNCCSSSYC*SPCHSA Trigger: AGCAGAGTGACAAGGGGATCAACAGTAAGAGGAGGA...GCAGCAATTTGTGAATATCCTAAGCCCTGCTTGGCTCTTCTGGGACCATCCAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR TCA 90 bp | CAGAGCTTACCCCTCATGGTCTTTGGTGAAGTGAGCTGGAAAGAGGTCATGCTTGAGGACACCATTTACTaGGATGGTGAAGAGCTCGCT | + |
|
Preference number: 4 (lower is better) Translates to: QSLPLMVFGEVSWKEVMLEDTIY*DGEELA Trigger: AGCGAGCTCTTCACCATCTCAGTAAATGGTGTCCTC...AAGCATGACCTCTTTCCAGCTCACTTCACCAAAGACCATGAGGGGTAAGCTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS-3UTR TCA 90 bp | ATAGAAGGGCGTTCTGATGTGGTAGCTTCATCCTGGTGTCAGCTGAAAGATGAACCTTGTCACTCTGCTTaGCGAACAGCATCCAAGCAT | + |
|
Preference number: 4 (lower is better) Translates to: IEGRSDVVASSWCQLKDEPCHSA*RTASKH Trigger: ATGCTTGGATGCTGTTCGTCAAGCAGAGTGACAAGG...TTCATCTTTCAGCTGACACCAGGATGAAGCTACCACATCAGAACGCCCTTCTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 72 bp | CCCTCTCCACTGCCTATTAGGATCTGGTCCCACATTTaGTTAAAAATGGGAAAACCACTAAAGCAGGCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: PSPLPIRIWSHI*LKMGKPLKQAA Trigger: TGCAGCCTGCTTTAGTGGTTTTCCCATTTTTAACAAAATGTGGGACCAGATCCTAATAGGCAGTGGAGAGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR GCA 90 bp | AGGGCTTTGTGTGATCCATTACATAAATATATTCTGCCTAGCAATATGACACAAGGCAGAGAGACTGGATaGAGATCAGCAGGCGCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: RALCDPLHKYILPSNMTQGRETG*RSAGAD Trigger: GTCTGCGCCTGCTGATCTGCATCCAGTCTCTCTGCC...TTGTGTCATATTGCTAGGCAGAATATATTTATGTAATGGATCACACAAAGCCCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| 3UTR CAA 72 bp | TCATGCTTCTCGGGTCTGCCCTTCATTGTTAGGGCTTaGTGTGATCCATTACATAAATATATTCTGCCTAGC | + |
|
Preference number: 4 (lower is better) Translates to: SCFSGLPFIVRA*CDPLHKYILPS Trigger: GCTAGGCAGAATATATTTATGTAATGGATCACACAAAGCCCTAACAATGAAGGGCAGACCCGAGAAGCATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| 3UTR CAA 72 bp | CTGGAAAGAGGTCATGCTTCTCGGGTCTGCCCTTCATaGTTAGGGCTTTGTGTGATCCATTACATAAATATA | + |
|
Preference number: 4 (lower is better) Translates to: LERGHASRVCPS*LGLCVIHYINI Trigger: TATATTTATGTAATGGATCACACAAAGCCCTAACAATGAAGGGCAGACCCGAGAAGCATGACCTCTTTCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS CCA 90 bp | AAGCGACAGTGGAATGCGGCCTCCACACGTGGTGCCCGCGGGCCCTaGGCCAAGGTCGCAGCCAGCAGAGCTAACAATGCCCCTGGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: KRQWNAASTRGARGP*AKVAASRANNAPGS Trigger: GGACCCAGGGGCATTGTTAGCTCTGCTGGCTGCGACCTTGGCCCAGGGCCCGCGGGCACCACGTGTGGAGGCCGCATTCCACTGTCGCTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 90 bp | TGCCACGTGCAGAGTGGCAGCAAGCGCATAGAAGCCAGCCACAGGTaGGGTGTACTGGCCGCTGGTCAGATTCAAGCCTGGGCCCCGGTG | + |
|
Preference number: 5 (lower is better) Translates to: CHVQSGSKRIEASHR*GVLAAGQIQAWAPV Trigger: CACCGGGGCCCAGGCTTGAATCTGACCAGCGGCCAGTACACCGCACCTGTGGCTGGCTTCTATGCGCTTGCTGCCACTCTGCACGTGGCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 90 bp | GCCAGCCACAGGTGCGGTGTACTGGCCGCTGGTCAGATTCAAGCCTaGGCCCCGGTGGAAGGCTCCCTCAACTTCGGGCAGGTAGTAGAT | + |
|
Preference number: 5 (lower is better) Translates to: ASHRCGVLAAGQIQA*APVEGSLNFGQVVD Trigger: ATCTACTACCTGCCCGAAGTTGAGGGAGCCTTCCACCGGGGCCCAGGCTTGAATCTGACCAGCGGCCAGTACACCGCACCTGTGGCTGGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS TCA 90 bp | GCAGACGATCCCGGGGTCGTGTTGGTCCCTTTCTTGGCTGCTCGGTaGGTGCCACGTGCAGAGTGGCAGCAAGCGCATAGAAGCCAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: ADDPGVVLVPFLAAR*VPRAEWQQAHRSQP Trigger: TGGCTGGCTTCTATGCGCTTGCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGGATCGTCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 90 bp | ACGATCCCGGGGTCGTGTTGGTCCCTTTCTTGGCTGCTCGGTGAGTaGCACGTGCAGAGTGGCAGCAAGCGCATAGAAGCCAGCCACAGG | + |
|
Preference number: 5 (lower is better) Translates to: TIPGSCWSLSWLLGE*HVQSGSKRIEASHR Trigger: CCTGTGGCTGGCTTCTATGCGCTTGCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGGATCGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 90 bp | CAGCAAGCGCATAGAAGCCAGCCACAGGTGCGGTGTACTGGCCGCTaGTCAGATTCAAGCCTGGGCCCCGGTGGAAGGCTCCCTCAACTT | + |
|
Preference number: 5 (lower is better) Translates to: QQAHRSQPQVRCTGR*SDSSLGPGGRLPQL Trigger: AAGTTGAGGGAGCCTTCCACCGGGGCCCAGGCTTGAATCTGACCAGCGGCCAGTACACCGCACCTGTGGCTGGCTTCTATGCGCTTGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 90 bp | AGACTGGATGCAGATCAGCAGGCGCAGACGATCCCGGGGTCGTGTTaGTCCCTTTCTTGGCTGCTCGGTGAGTGCCACGTGCAGAGTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RLDADQQAQTIPGSC*SLSWLLGECHVQSG Trigger: GCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGGATCGTCTGCGCCTGCTGATCTGCATCCAGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 90 bp | CCATCACAGTCTCCAGGGAGGCATTGTGCTGGCAGAGAGACTGGATaGAGATCAGCAGGCGCAGACGATCCCGGGGTCGTGTTGGTCCCT | + |
|
Preference number: 5 (lower is better) Translates to: PSQSPGRHCAGRETG*RSAGADDPGVVLVP Trigger: AGGGACCAACACGACCCCGGGATCGTCTGCGCCTGCTGATCTGCATCCAGTCTCTCTGCCAGCACAATGCCTCCCTGGAGACTGTGATGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CAA 90 bp | GCTTCTTCCTCCCAAGCTGCCATTCAGCCAGACCACCCACCCCCTTTACAATGGGTCTCCAGGGAGGCATaGTGCTGGCAGAGAGACTGG | + |
|
Preference number: 5 (lower is better) Translates to: ASSSQAAIQPDHPPPLQWVSREA*CWQRDW Trigger: CCAGTCTCTCTGCCAGCACAATGCCTCCCTGGAGAC...CCATTGTAAAGGGGGTGGGTGGTCTGGCTGAATGGCAGCTTGGGAGGAAGAAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
||
| CDS CCA 90 bp | TCCAGATGGCTCTCTCGCTGCCGTACTGCGCCTTTCAGCAACAGCTaGAACTCCTTCAGCAGAACCTCAGATGGGATAAAGGGGCCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: SRWLSRCRTAPFSNS*NSFSRTSDGIKGPG Trigger: CCCAGGCCCCTTTATCCCATCTGAGGTTCTGCTGAAGGAGTTCCAGCTGTTGCTGAAAGGCGCAGTACGGCAGCGAGAGAGCCATCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
||
| CDS-3UTR CAA 90 bp | TTCCTGGTAGGGTGGGTACCAGCCATACTGAGAATCGGGCCAGGCCTGCTCACGCCCTTGTCACTCTGCTaGACGAACAGCATCCAAGCA | + |
|
Preference number: 5 (lower is better) Translates to: FLVGWVPAILRIGPGLLTPLSLC*TNSIQA Trigger: TGCTTGGATGCTGTTCGTCAAGCAGAGTGACAAGGG...CGTGAGCAGGCCTGGCCCGATTCTCAGTATGGCTGGTACCCACCCTACCAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
||
| CDS-3UTR CAA 90 bp | GGCTTCCTTGTGCACAGGGCCACTGTCACCACTCTGCTTGGTAAGGGTAAGAGCGAGGAGCCGCTGGCATaGTCCAAGAAGACAGAAGTG | + |
|
Preference number: 5 (lower is better) Translates to: GFLVHRATVTTLLGKGKSEEPLA*SKKTEV Trigger: CACTTCTGTCTTCTTGGACAATGCCAGCGGCTCCTC...GCTCTTACCCTTACCAAGCAGAGTGGTGACAGTGGCCCTGTGCACAAGGAAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
||
| CDS GCA 90 bp | CTCCTGGCTTTGCTCCTCCTCTTACTGTTGATCCCCTTGTCACTCTaGTTGACGAACAGCATCCAAGCATCCCGGGGATCCACACTGTGT | + |
|
Preference number: 5 (lower is better) Translates to: LLALLLLLLLIPLSL*LTNSIQASRGSTLC Trigger: ACACAGTGTGGATCCCCGGGATGCTTGGATGCTGTTCGTCAAGCAGAGTGACAAGGGGATCAACAGTAAGAGGAGGAGCAAAGCCAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
||
| CDS TCA 90 bp | TGTAGTGTCCTGCCTGTAGATAGAGGACACCATTTACTGAGATGGTaGAGAGCTCGCTGCTGTTCTCCAGCCCCATCACAGTCTCCAGGG | + |
|
Preference number: 5 (lower is better) Translates to: CSVLPVDRGHHLLRW*RARCCSPAPSQSPG Trigger: CCCTGGAGACTGTGATGGGGCTGGAGAACAGCAGCGAGCTCTTCACCATCTCAGTAAATGGTGTCCTCTATCTACAGGCAGGACACTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS-3UTR CAA 90 bp | TTAGGATATTCACAAATTGCTGCTGGTTCTGGGAGAGCCTGCTTCCATCACCTCTTCAGCCTCCTGGCTTaGCTCCTCCTCTTACTGTTG | + |
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Preference number: 5 (lower is better) Translates to: LGYSQIAAGSGRACFHHLFSLLA*LLLLLL Trigger: CAACAGTAAGAGGAGGAGCAAAGCCAGGAGGCTGAA...GAGGTGATGGAAGCAGGCTCTCCCAGAACCAGCAGCAATTTGTGAATATCCTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS-3UTR CAA 90 bp | GTAGAAGATAACGTCACTGACATGTCTGTGCCCACTGGATACAAAATGAAATCCGAGGAGCCGCTGGCATaGTCCAAGAAGACAGAAGTG | + |
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Preference number: 5 (lower is better) Translates to: VEDNVTDMSVPTGYKMKSEEPLA*SKKTEV Trigger: CACTTCTGTCTTCTTGGACAATGCCAGCGGCTCCTC...GGATTTCATTTTGTATCCAGTGGGCACAGACATGTCAGTGACGTTATCTTCTAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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| CDS CCA 72 bp | TGCATGCGCAATGGTGGGTTCCGGCGGGCTGTTGGCTaGCGGGGCGGGCAGCTCGGCCCCGGGCGGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: CMRNGGFRRAVG*RGGQLGPGRLR Trigger: CCGCAGCCGCCCGGGGCCGAGCTGCCCGCCCCGCCAGCCAACAGCCCGCCGGAACCCACCATTGCGCATGCA 78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | CCACGGGCTCCGCGGACTCAGGGACACCGAGGCCCATaGCGGCGAGTAGGCTGGCGCAGGCGAGCAGCGTGC | + |
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Preference number: 6 (lower is better) Translates to: PRAPRTQGHRGP*RRVGWRRRAAC Trigger: GCACGCTGCTCGCCTGCGCCAGCCTACTCGCCGCCATGGGCCTCGGTGTCCCTGAGTCCGCGGAGCCCGTGG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | TGTGTGCATGCGCAATGGTGGGTTCCGGCGGGCTGTTaGCTGGCGGGGCGGGCAGCTCGGCCCCGGGCGGCT | + |
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Preference number: 6 (lower is better) Translates to: CVHAQWWVPAGC*LAGRAARPRAA Trigger: AGCCGCCCGGGGCCGAGCTGCCCGCCCCGCCAGCCAACAGCCCGCCGGAACCCACCATTGCGCATGCACACA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 72 bp | GCGCAAGCGACAGTGGAATGCGGCCTCCACACGTGGTaGCCGCGGGCCCTGGGCCAAGGTCGCAGCCAGCAG | + |
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Preference number: 6 (lower is better) Translates to: AQATVECGLHTW*PRALGQGRSQQ Trigger: CTGCTGGCTGCGACCTTGGCCCAGGGCCCGCGGGCACCACGTGTGGAGGCCGCATTCCACTGTCGCTTGCGC 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | CGCCGATCCACCTGCACATCCCGGCGCAAGCGACAGTaGAATGCGGCCTCCACACGTGGTGCCCGCGGGCCC | + |
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Preference number: 6 (lower is better) Translates to: RRSTCTSRRKRQ*NAASTRGARGP Trigger: GGGCCCGCGGGCACCACGTGTGGAGGCCGCATTCCACTGTCGCTTGCGCCGGGATGTGCAGGTGGATCGGCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | AGGTGCGGTGTACTGGCCGCTGGTCAGATTCAAGCCTaGGCCCCGGTGGAAGGCTCCCTCAACTTCGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: RCGVLAAGQIQA*APVEGSLNFGQ Trigger: CTGCCCGAAGTTGAGGGAGCCTTCCACCGGGGCCCAGGCTTGAATCTGACCAGCGGCCAGTACACCGCACCT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | GCGCAGACGATCCCGGGGTCGTGTTGGTCCCTTTCTTaGCTGCTCGGTGAGTGCCACGTGCAGAGTGGCAGC | + |
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Preference number: 6 (lower is better) Translates to: AQTIPGSCWSLS*LLGECHVQSGS Trigger: GCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGGATCGTCTGCGC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | CATAGAAGCCAGCCACAGGTGCGGTGTACTGGCCGCTaGTCAGATTCAAGCCTGGGCCCCGGTGGAAGGCTC | + |
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Preference number: 6 (lower is better) Translates to: HRSQPQVRCTGR*SDSSLGPGGRL Trigger: GAGCCTTCCACCGGGGCCCAGGCTTGAATCTGACCAGCGGCCAGTACACCGCACCTGTGGCTGGCTTCTATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | GCAGATCAGCAGGCGCAGACGATCCCGGGGTCGTGTTaGTCCCTTTCTTGGCTGCTCGGTGAGTGCCACGTG | + |
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Preference number: 6 (lower is better) Translates to: ADQQAQTIPGSC*SLSWLLGECHV Trigger: CACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGGATCGTCTGCGCCTGCTGATCTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS TCA 72 bp | CCCGGGGTCGTGTTGGTCCCTTTCTTGGCTGCTCGGTaGGTGCCACGTGCAGAGTGGCAGCAAGCGCATAGA | + |
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Preference number: 6 (lower is better) Translates to: PGVVLVPFLAAR*VPRAEWQQAHR Trigger: TCTATGCGCTTGCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 72 bp | CTACCCGAGGCTGGTGTAGTGAGATCCCTGGTGCAGTaGTCCAGATGGCTCTCTCGCTGCCGTACTGCGCCT | + |
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Preference number: 6 (lower is better) Translates to: LPEAGVVRSLVQ*SRWLSRCRTAP Trigger: AGGCGCAGTACGGCAGCGAGAGAGCCATCTGGAGCACTGCACCAGGGATCTCACTACACCAGCCTCGGGTAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 72 bp | AGACGATCCCGGGGTCGTGTTGGTCCCTTTCTTGGCTaGTCGGTGAGTGCCACGTGCAGAGTGGCAGCAAGC | + |
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Preference number: 6 (lower is better) Translates to: RRSRGRVGPFLG*SVSATCRVAAS Trigger: GCTTGCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCCCGGGATCGTCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 72 bp | CAGAGTGGCAGCAAGCGCATAGAAGCCAGCCACAGGTaGGGTGTACTGGCCGCTGGTCAGATTCAAGCCTGG | + |
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Preference number: 6 (lower is better) Translates to: QSGSKRIEASHR*GVLAAGQIQAW Trigger: CCAGGCTTGAATCTGACCAGCGGCCAGTACACCGCACCTGTGGCTGGCTTCTATGCGCTTGCTGCCACTCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 72 bp | GGGTCGTGTTGGTCCCTTTCTTGGCTGCTCGGTGAGTaGCACGTGCAGAGTGGCAGCAAGCGCATAGAAGCC | + |
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Preference number: 6 (lower is better) Translates to: GSCWSLSWLLGE*HVQSGSKRIEA Trigger: GGCTTCTATGCGCTTGCTGCCACTCTGCACGTGGCACTCACCGAGCAGCCAAGAAAGGGACCAACACGACCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CAA 90 bp | CTGGCTTTGCTCCTCCTCTTACTGTTGATCCCCTTGTCACTCTGCTaGACGAACAGCATCCAAGCATCCCGGGGATCCACACTGTGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LALLLLLLLIPLSLC*TNSIQASRGSTLCA Trigger: TGCACACAGTGTGGATCCCCGGGATGCTTGGATGCTGTTCGTCAAGCAGAGTGACAAGGGGATCAACAGTAAGAGGAGGAGCAAAGCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS GCA 72 bp | TTGCTCCTCCTCTTACTGTTGATCCCCTTGTCACTCTaGTTGACGAACAGCATCCAAGCATCCCGGGGATCC | + |
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Preference number: 6 (lower is better) Translates to: LLLLLLLIPLSL*LTNSIQASRGS Trigger: GGATCCCCGGGATGCTTGGATGCTGTTCGTCAAGCAGAGTGACAAGGGGATCAACAGTAAGAGGAGGAGCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CCA 72 bp | CTCTCTCGCTGCCGTACTGCGCCTTTCAGCAACAGCTaGAACTCCTTCAGCAGAACCTCAGATGGGATAAAG | + |
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Preference number: 6 (lower is better) Translates to: LSRCRTAPFSNS*NSFSRTSDGIK Trigger: CTTTATCCCATCTGAGGTTCTGCTGAAGGAGTTCCAGCTGTTGCTGAAAGGCGCAGTACGGCAGCGAGAGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS CAA 72 bp | CTCCTCCTCTTACTGTTGATCCCCTTGTCACTCTGCTaGACGAACAGCATCCAAGCATCCCGGGGATCCACA | + |
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Preference number: 6 (lower is better) Translates to: LLLLLLIPLSLC*TNSIQASRGST Trigger: TGTGGATCCCCGGGATGCTTGGATGCTGTTCGTCAAGCAGAGTGACAAGGGGATCAACAGTAAGAGGAGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000086861.12 |
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| CDS TCA 72 bp | CTGCCTGTAGATAGAGGACACCATTTACTGAGATGGTaGAGAGCTCGCTGCTGTTCTCCAGCCCCATCACAG | + |
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Preference number: 6 (lower is better) Translates to: LPVDRGHHLLRW*RARCCSPAPSQ Trigger: CTGTGATGGGGCTGGAGAACAGCAGCGAGCTCTTCACCATCTCAGTAAATGGTGTCCTCTATCTACAGGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086861.12 ENSMUST00000190998.2 |
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