Pregenerated sensors for ERCC1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000003549Ensembl transcript IDs: ENSMUST00000003645.9, ENSMUST00000160369.8, ENSMUST00000161378.2, ENSMUST00000176818.2, ENSMUST00000177486.2
Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCGGTGAAGAGCTGTTCCAGGGATCCAAATGTAGCCAGGAGGGTCTaGCTGTCGGTCTTGTTCACAGATTTCACGGTGGTCAGACACTCA | + |
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Preference number: 1 (lower is better) Translates to: AVKSCSRDPNVARRV*LSVLFTDFTVVRHS Trigger: TGAGTGTCTGACCACCGTGAAATCTGTGAACAAGACCGACAGCCAGACCCTCCTGGCTACATTTGGATCCCTGGAACAGCTCTTCACCGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| 3UTR CCA 90 bp | ATATCAAAACATCCAAAAGTGGCCACTGAGTGGTGCTGGGTACTATaGTCACAGCAGGATCAGGATGGCACTCTGGGCTACTTAGCTGAG | + |
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Preference number: 1 (lower is better) Translates to: ISKHPKVATEWCWVL*SQQDQDGTLGYLAE Trigger: CTCAGCTAAGTAGCCCAGAGTGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTTTTGGATGTTTTGATAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR-3UTR CCA 90 bp | GATGCTATTAGACTTTGCTCCTGTTTTCAGGGTCTGGCTGGGGTTCTCTCCTGCGGCCCCAGCCCCTCCTaGAGGCTGGGTGATGGCGTA | + |
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Preference number: 2 (lower is better) Translates to: DAIRLCSCFQGLAGVLSCGPSPS*RLGDGV Trigger: TACGCCATCACCCAGCCTCCAGGAGGGGCTGGGGCC...GCAGGAGAGAACCCCAGCCAGACCCTGAAAACAGGAGCAAAGTCTAATAGCATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| 3UTR CAA 90 bp | TGTTCCAGGGATCCAAATGTAGCCAGGAGGGTCTGGCTGTCGGTCTaGTTCACAGATTTCACGGTGGTCAGACACTCAGTGGCCCGTGAT | + |
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Preference number: 2 (lower is better) Translates to: CSRDPNVARRVWLSV*FTDFTVVRHSVARD Trigger: ATCACGGGCCACTGAGTGTCTGACCACCGTGAAATCTGTGAACAAGACCGACAGCCAGACCCTCCTGGCTACATTTGGATCCCTGGAACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| 3UTR-3UTR TCA 90 bp | CAAAACATCCAAAAGTGGCCACTGAGTGGTGCTGGGTACTATGGTCACAGCAGGCAGGAACACAGATGCTaGGGGCAGACTAGGGGGTCA | + |
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Preference number: 2 (lower is better) Translates to: QNIQKWPLSGAGYYGHSRQEHRC*GQTRGS Trigger: TGACCCCCTAGTCTGCCCTCAGCATCTGTGTTCCTG...CCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTTTTGGATGTTTTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTGGCCACTGAGTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGATGGCAGCCTCAGAGCTGGCATaGGAAACATGGATTCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: KWPLSGAGYYGHSRIRMAASELA*ETWIPA Trigger: TGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGC...TGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR-3UTR TCA 90 bp | CATGGAAAATTCTTTATTGTGACACTGGGCCTAGGTGGCAGCAGGTCATCGAGGCCTCCCTTGATGCGGTaGAGAGCTGTTCCAGGGATC | + |
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Preference number: 2 (lower is better) Translates to: HGKFFIVTLGLGGSRSSRPPLMR*RAVPGI Trigger: GATCCCTGGAACAGCTCTTCACCGCATCAAGGGAGG...CCTCGATGACCTGCTGCCACCTAGGCCCAGTGTCACAATAAAGAATTTTCCATG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| 3UTR-3UTR GCA 90 bp | CTGGCATGGGAAACATGGATTCCAGCAGAGATGACAGGAACACAGATGCTGAGGAGGGAAGGGTGGACTTaGTGTGGAAAGGCCCAAGCT | + |
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Preference number: 2 (lower is better) Translates to: LAWETWIPAEMTGTQMLRREGWT*CGKAQA Trigger: AGCTTGGGCCTTTCCACAGCAAGTCCACCCTTCCCT...CCTCAGCATCTGTGTTCCTGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR-3UTR CAA 90 bp | ATCCAAAAGTGGCCACTGAGTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGCAGGGAAGGGTGGACTaGCTGTGGAAAGGCCCAAGC | + |
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Preference number: 3 (lower is better) Translates to: IQKWPLSGAGYYGHSRIRQGRVD*LWKGPS Trigger: GCTTGGGCCTTTCCACAGCAAGTCCACCCTTCCCTG...CCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTTTTGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR-3UTR CAA 90 bp | GTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGATGGCACTCTGGGCTACTTAGACCCTTAATGCTGTaGGGAGGGGATGAGGGAGGA | + |
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Preference number: 3 (lower is better) Translates to: VVLGTMVTAGSGWHSGLLRPLML*GGDEGG Trigger: TCCTCCCTCATCCCCTCCCAACAGCATTAAGGGTCT...AAGTAGCCCAGAGTGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR CCA 72 bp | AGCTGTTCCAGGGATCCAAATGTAGCCAGGAGGGTCTaGCTGTCGGTCTTGTTCACAGATTTCACGGTGGTC | + |
|
Preference number: 3 (lower is better) Translates to: SCSRDPNVARRV*LSVLFTDFTVV Trigger: GACCACCGTGAAATCTGTGAACAAGACCGACAGCCAGACCCTCCTGGCTACATTTGGATCCCTGGAACAGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| 3UTR CCA 72 bp | TCTTGTTCACAGATTTCACGGTGGTCAGACACTCAGTaGCCCGTGATAGGAAGTTCTGCTCCAGCTTTTCCA | + |
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Preference number: 3 (lower is better) Translates to: SCSQISRWSDTQ*PVIGSSAPAFP Trigger: TGGAAAAGCTGGAGCAGAACTTCCTATCACGGGCCACTGAGTGTCTGACCACCGTGAAATCTGTGAACAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| 3UTR CCA 72 bp | ATATCAAAACATCCAAAAGTGGCCACTGAGTGGTGCTaGGTACTATGGTCACAGCAGGATCAGGATGGCACT | + |
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Preference number: 3 (lower is better) Translates to: ISKHPKVATEWC*VLWSQQDQDGT Trigger: AGTGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTTTTGGATGTTTTGATAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR GCA 72 bp | ATAATATCAAAACATCCAAAAGTGGCCACTGAGTGGTaGTGGGTACTATGGTCACAGCAGGATCAGGATGGC | + |
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Preference number: 3 (lower is better) Translates to: IISKHPKVATEW*WVLWSQQDQDG Trigger: GCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTTTTGGATGTTTTGATATTAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR TCA 90 bp | TCTGGCTGGGGTTCTCTCCTGCCGCAGGTTCAGAGCCTGTGGGCACTGTGGCCCCCTGGTGGGTGGTCCTaGGGGCTGTGGCCGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: SGWGSLLPQVQSLWALWPPGGWS*GLWPTF Trigger: GAAAGTCGGCCACAGCCCTCAGGACCACCCACCAGG...GGGCCACAGTGCCCACAGGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGA 67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS-3UTR CCA 90 bp | GGTCTGGCTGGGGTTCTCTCCTGCCGCAGGTTCAGAGCCTGTGGGCACTGTGGCCAAACTTCCTCCTGGTaGGTGGTCCTGAGGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: GLAGVLSCRRFRACGHCGQTSSW*VVLRAV Trigger: CACAGCCCTCAGGACCACCCACCAGGAGGAAGTTTG...GCCACAGTGCCCACAGGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS-3UTR CCA 90 bp | AGGACGGGACAGGGAAGGGTGGACTTGCTGTGGAAAGGCCCAAGCTCAACCCAGCAGGTTCAGAGCCTGTaGGCACTGTGGCCCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: RTGQGRVDLLWKGPSSTQQVQSL*ALWPQP Trigger: GGGCTGGGGCCACAGTGCCCACAGGCTCTGAACCTG...CTGGGTTGAGCTTGGGCCTTTCCACAGCAAGTCCACCCTTCCCTGTCCCGTCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGAGGGGGAGGCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGACCTGGTGGGTGGTCCTaGGGGCTGTGGCCGACTTTC | + |
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Preference number: 4 (lower is better) Translates to: SWRGRPQSWHGKHGFQQRPGGWS*GLWPTF Trigger: GAAAGTCGGCCACAGCCCTCAGGACCACCCACCAGG...TCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGCCTCCCCCTCCAGGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CCA 90 bp | GTACTATGGTCACAGCAGGATCAGGATGGCACTCTGGGCTACTTAGCTGAGGGGAGCCTGTGGGCACTGTaGCCCCAGCCCCTCCTGGAG | + |
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Preference number: 4 (lower is better) Translates to: VLWSQQDQDGTLGYLAEGSLWAL*PQPLLE Trigger: CTCCAGGAGGGGCTGGGGCCACAGTGCCCACAGGCT...CCCCTCAGCTAAGTAGCCCAGAGTGCCATCCTGATCCTGCTGTGACCATAGTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR TCA 90 bp | TCCTGGAGGGGGAGGCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGATACTCAGCATACGTCTaGGGGGCCACGTGGGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: SWRGRPQSWHGKHGFQQRYSAYV*GATWAE Trigger: CTCAGCCCACGTGGCCCCTCAGACGTATGCTGAGTA...TCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGCCTCCCCCTCCAGGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | TGCTCCTGTTTTCAGGGTCTGGCTGGGGTTCTCTCCTGCCGCAGGTTCAGAGCCGATCCCCTGGAACCCTaGACAGGGCACCTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: CSCFQGLAGVLSCRRFRADPLEP*TGHLFF Trigger: GAAGAAGAGGTGCCCTGTGCAGGGTTCCAGGGGATC...GGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGACCCTGAAAACAGGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS-3UTR CCA 90 bp | GGACGGGACAGGGAAGGGTGGACTTGCTGTGGAAAGGCCCAAGCTCAACCCAGACAAACTTCCTCCTGGTaGGTGGTCCTGAGGGCTGTG | + |
|
Preference number: 4 (lower is better) Translates to: GRDREGWTCCGKAQAQPRQTSSW*VVLRAV Trigger: CACAGCCCTCAGGACCACCCACCAGGAGGAAGTTTG...TCTGGGTTGAGCTTGGGCCTTTCCACAGCAAGTCCACCCTTCCCTGTCCCGTCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CCA 90 bp | GCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGATGACAGGAACACAGGGCCCCAGCCCCTCCTaGAGGCTGGGTGATGGCGTA | + |
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Preference number: 4 (lower is better) Translates to: ASELAWETWIPAEMTGTQGPSPS*RLGDGV Trigger: TACGCCATCACCCAGCCTCCAGGAGGGGCTGGGGCC...CTGTGTTCCTGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | GATGGCACTCTGGGCTACTTAGCTGAGGGGATCACAGAGGGCTTCCTGGAGGGGGGAAAAGGGCGCAGGTaGTCTGGCCCAGCACATAAT | + |
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Preference number: 4 (lower is better) Translates to: DGTLGYLAEGITEGFLEGGKGRR*SGPAHN Trigger: ATTATGTGCTGGGCCAGAGCACCTGCGCCCTTTTCC...CCCCTCCAGGAAGCCCTCTGTGATCCCCTCAGCTAAGTAGCCCAGAGTGCCATC 59% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | GAGCTGTTCCAGGGATCCAAATGTAGCCAGGAGGGTCTGGCTGTCGGTCTTGTTCTCCAGGTACCGCCCTaGTTCCTCTCCAGGCCAGGA | + |
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Preference number: 4 (lower is better) Translates to: ELFQGSKCSQEGLAVGLVLQVPP*FLSRPG Trigger: TCCTGGCCTGGAGAGGAAGCAGGGCGGTACCTGGAG...AACAAGACCGACAGCCAGACCCTCCTGGCTACATTTGGATCCCTGGAACAGCTC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| CDS-3UTR CCA 90 bp | AAGTGGCCACTGAGTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGATGGCAGCCCCTCCTGGAGGCTaGGTGATGGCGTACTCAGCA | + |
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Preference number: 4 (lower is better) Translates to: KWPLSGAGYYGHSRIRMAAPPGG*VMAYSA Trigger: TGCTGAGTACGCCATCACCCAGCCTCCAGGAGGGGC...TGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | CTGGCATGGGAAACATGGATTCCAGCAGAGATGACAGGAACACAGATGCTGAGGCCGCCCTGCTTCCTCTaGACTCCAGGCCAGGACCAG | + |
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Preference number: 4 (lower is better) Translates to: LAWETWIPAEMTGTQMLRPPCFL*TPGQDQ Trigger: CTGGTCCTGGCCTGGAGTGCAGAGGAAGCAGGGCGG...CCTCAGCATCTGTGTTCCTGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | TCCTGGAGGGGGAGGCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGAAGCTCCTTGAGAGCCTaGTGGGGATCTTTCACATCC | + |
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Preference number: 4 (lower is better) Translates to: SWRGRPQSWHGKHGFQQRSSLRA*WGSFTS Trigger: GGATGTGAAAGATCCCCAGCAGGCTCTCAAGGAGCT...TCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGCCTCCCCCTCCAGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CCA 90 bp | GTACTATGGTCACAGCAGGATCAGGATGGCACTCTGGGCTACTTAGCTGAGGGGTTTTCAGGGTCTGGCTaGGGTTCTCTCCTGCCGCAG | + |
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Preference number: 4 (lower is better) Translates to: VLWSQQDQDGTLGYLAEGFSGSG*GSLLPQ Trigger: CTGCGGCAGGAGAGAACCCCAGCCAGACCCTGAAAA...CCCCTCAGCTAAGTAGCCCAGAGTGCCATCCTGATCCTGCTGTGACCATAGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CCA 90 bp | AAGTGGCCACTGAGTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGATGGCACCTGTTTTCAGGGTCTaGCTGGGGTTCTCTCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: KWPLSGAGYYGHSRIRMAPVFRV*LGFSPA Trigger: GGCAGGAGAGAACCCCAGCCAGACCCTGAAAACAGG...TGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | GGCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGATGACAGGAACACAAGGCCAGGACCAGGGTaGAGTCAGCCAAGATGCACA | + |
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Preference number: 4 (lower is better) Translates to: GLRAGMGNMDSSRDDRNTRPGPG*SQPRCT Trigger: TGTGCATCTTGGCTGACTGCACCCTGGTCCTGGCCT...TGTGTTCCTGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CCA 90 bp | ATGAGGGAGGACGGGACAGGGAAGGGTGGACTTGCTGTGGAAAGGCCCAAGCTCTTCATGGATGTAGTCTaGATGGAGGTTGTGGTAGCG | + |
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Preference number: 4 (lower is better) Translates to: MREDGTGKGGLAVERPKLFMDVV*MEVVVA Trigger: CGCTACCACAACCTCCATCCAGACTACATCCATGAA...GAGCTTGGGCCTTTCCACAGCAAGTCCACCCTTCCCTGTCCCGTCCTCCCTCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR GCA 90 bp | GTGGCAGCAGGTCATCGAGGCACTTTGAGGAAGGGTTCGTGTAGTACTTCAAAGAGGCCAGGACCAGGGTaGAGTCAGCCAAGATGCACA | + |
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Preference number: 4 (lower is better) Translates to: VAAGHRGTLRKGSCSTSKRPGPG*SQPRCT Trigger: TGTGCATCTTGGCTGACTGCACCCTGGTCCTGGCCT...CTTTGAAGTACTACACGAACCCTTCCTCAAAGTGCCTCGATGACCTGCTGCCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| CDS-3UTR CCA 90 bp | TGCTCCTGTTTTCAGGGTCTGGCTGGGGTTCTCTCCTGCCGCAGGTTCAGAGCCCTCTTCTTCCTCCAGTaGGATAACAAACTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: CSCFQGLAGVLSCRRFRALFFLQ*DNKLPP Trigger: AGGAGGAAGTTTGTTATCCCACTGGAGGAAGAAGAG...GGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGACCCTGAAAACAGGAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS-3UTR CCA 90 bp | GTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGATGGCACTCTGGGCTACTTCATAAGGAGGTCGGCTaGCTTCTGCTCATACGCCTT | + |
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Preference number: 4 (lower is better) Translates to: VVLGTMVTAGSGWHSGLLHKEVG*LLLIRL Trigger: AAGGCGTATGAGCAGAAGCCAGCCGACCTCCTTATG...AAGTAGCCCAGAGTGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| 3UTR CAA 72 bp | GATCCAAATGTAGCCAGGAGGGTCTGGCTGTCGGTCTaGTTCACAGATTTCACGGTGGTCAGACACTCAGTG | + |
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Preference number: 4 (lower is better) Translates to: DPNVARRVWLSV*FTDFTVVRHSV Trigger: CACTGAGTGTCTGACCACCGTGAAATCTGTGAACAAGACCGACAGCCAGACCCTCCTGGCTACATTTGGATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000177486.2 |
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| CDS-3UTR CCA 90 bp | GGGGAGGCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGATGACAGGACTCTTCTTCCTCCAGTaGGATAACAAACTTCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: GEASELAWETWIPAEMTGLFFLQ*DNKLPP Trigger: AGGAGGAAGTTTGTTATCCCACTGGAGGAAGAAGAG...TCCTGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGCCTCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CCA 90 bp | GATGCTATTAGACTTTGCTCCTGTTTTCAGGGTCTGGCTGGGGTTCTCTCCTGCCTTGGTTGCCCTCAGTaGTCAAAAGAGGGCACTGGA | + |
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Preference number: 4 (lower is better) Translates to: DAIRLCSCFQGLAGVLSCLGCPQ*SKEGTG Trigger: TCCAGTGCCCTCTTTTGACCACTGAGGGCAACCAAG...GCAGGAGAGAACCCCAGCCAGACCCTGAAAACAGGAGCAAAGTCTAATAGCATC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS-3UTR GCA 90 bp | CTGGCATGGGAAACATGGATTCCAGCAGAGATGACAGGAACACAGATGCTGAGGATTCCCAGGGCACATTaGGCACAAACTTCAACACGG | + |
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Preference number: 4 (lower is better) Translates to: LAWETWIPAEMTGTQMLRIPRAH*AQTSTR Trigger: CCGTGTTGAAGTTTGTGCGCAATGTGCCCTGGGAAT...CCTCAGCATCTGTGTTCCTGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CAA 90 bp | GGTCTGGCTGGGGTTCTCTCCTGCCGCAGGTTCAGAGCCTGTGGGCACTGTGGCCCACGTGGGCTGAGGTaGCTGGGATGGTGGGATTCC | + |
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Preference number: 5 (lower is better) Translates to: GLAGVLSCRRFRACGHCGPRGLR*LGWWDS Trigger: GGAATCCCACCATCCCAGCAACCTCAGCCCACGTGG...GCCACAGTGCCCACAGGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGACC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS GCA 90 bp | GGCTGGCTTCTGCTCATACGCCTTGTAGGTCTCCAGGTACCGCCCTaGTTCCTCTGCACTCCAGGCCAGGACCAGGGTGCAGTCAGCCAA | + |
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Preference number: 5 (lower is better) Translates to: GWLLLIRLVGLQVPP*FLCTPGQDQGAVSQ Trigger: TTGGCTGACTGCACCCTGGTCCTGGCCTGGAGTGCAGAGGAAGCAGGGCGGTACCTGGAGACCTACAAGGCGTATGAGCAGAAGCCAGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 |
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| CDS GCA 90 bp | CCAGCACATAATCGGGAATCACCTCACCGAATTCCCAGGGCACATTaGGCACAAACTTCAACACGGGGTTGCCCCTCTGCCTCGGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: PAHNRESPHRIPRAH*AQTSTRGCPSASGS Trigger: TGAGCCCGAGGCAGAGGGGCAACCCCGTGTTGAAGTTTGTGCGCAATGTGCCCTGGGAATTCGGTGAGGTGATTCCCGATTATGTGCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 ENSMUST00000176818.2 |
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| CDS-3UTR CAA 90 bp | AACATCCAAAAGTGGCCACTGAGTGGTGCTGGGTACTATGGTCACAGCAGGATCCCACGTGGGCTGAGGTaGCTGGGATGGTGGGATTCC | + |
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Preference number: 5 (lower is better) Translates to: NIQKWPLSGAGYYGHSRIPRGLR*LGWWDS Trigger: GGAATCCCACCATCCCAGCAACCTCAGCCCACGTGG...GATCCTGCTGTGACCATAGTACCCAGCACCACTCAGTGGCCACTTTTGGATGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS-3UTR CAA 90 bp | GAGGGGGAGGCCTCAGAGCTGGCATGGGAAACATGGATTCCAGCAGAGATGACAATCTTAGCCAGCTCCTaGAGAGCCTGCTGGGGATCT | + |
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Preference number: 5 (lower is better) Translates to: EGEASELAWETWIPAEMTILASS*RACWGS Trigger: AGATCCCCAGCAGGCTCTCAAGGAGCTGGCTAAGAT...TGTCATCTCTGCTGGAATCCATGTTTCCCATGCCAGCTCTGAGGCCTCCCCCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS GCA 90 bp | GTTGCCCTCAGTGGTCAAAAGAGGGCACTGGATCCCCTGGAACCCTaGACAGGGCACCTCTTCTTCCTCCAGTGGGATAACAAACTTCCT | + |
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Preference number: 5 (lower is better) Translates to: VALSGQKRALDPLEP*TGHLFFLQWDNKLP Trigger: AGGAAGTTTGTTATCCCACTGGAGGAAGAAGAGGTGCCCTGTGCAGGGTTCCAGGGGATCCAGTGCCCTCTTTTGACCACTGAGGGCAAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS CCA 90 bp | CAGTCAGCCAAGATGCACATCTTAGCCAGCTCCTTGAGAGCCTGCTaGGGATCACATCCACTTGAACCAGCAGCACACGAAGGGCGAAGT | + |
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Preference number: 5 (lower is better) Translates to: QSAKMHILASSLRAC*GSHPLEPAAHEGRS Trigger: ACTTCGCCCTTCGTGTGCTGCTGGTTCAAGTGGATGTGATCCCCAGCAGGCTCTCAAGGAGCTGGCTAAGATGTGCATCTTGGCTGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000176818.2 |
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| CDS-3UTR CAA 90 bp | CTGTTTTCAGGGTCTGGCTGGGGTTCTCTCCTGCCGCAGGTTCAGAGCCTGTGGCATGTACATTCTTGGTaGCCCTCAGTGGTCAAAAGA | + |
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Preference number: 5 (lower is better) Translates to: LFSGSGWGSLLPQVQSLWHVHSW*PSVVKR Trigger: TCTTTTGACCACTGAGGGCAACCAAGAATGTACATG...CCACAGGCTCTGAACCTGCGGCAGGAGAGAACCCCAGCCAGACCCTGAAAACAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS GCA 90 bp | GATTTCACGGTGGTCAGACACTCAGTGGCCCGTGATAGGAAGTTCTaGTCCAGCTTTTCCATAAGGAGGTCGGCTGGCTTCTGCTCATAC | + |
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Preference number: 5 (lower is better) Translates to: DFTVVRHSVARDRKF*SSFSIRRSAGFCSY Trigger: GTATGAGCAGAAGCCAGCCGACCTCCTTATGGAAAAGCTGGAGCAGAACTTCCTATCACGGGCCACTGAGTGTCTGACCACCGTGAAATC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000003645.9 |
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| CDS-3UTR CAA 90 bp | GTGGTGCTGGGTACTATGGTCACAGCAGGATCAGGATGGCACTCTGGGCTACTTAATTCCCAGGGCACATaGCGCACAAACTTCAACACG | + |
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Preference number: 5 (lower is better) Translates to: VVLGTMVTAGSGWHSGLLNSQGT*RTNFNT Trigger: CGTGTTGAAGTTTGTGCGCAATGTGCCCTGGGAATT...AAGTAGCCCAGAGTGCCATCCTGATCCTGCTGTGACCATAGTACCCAGCACCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS GCA 90 bp | GTACAGGAGGACAAGAGGCACAGTGATACCCGTGATAGGAAGTTCTaGTCCAGCTTTTCCATAAGGAGGTCGGCTGGCTTCTGCTCATAC | + |
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Preference number: 5 (lower is better) Translates to: VQEDKRHSDTRDRKF*SSFSIRRSAGFCSY Trigger: GTATGAGCAGAAGCCAGCCGACCTCCTTATGGAAAAGCTGGAGCAGAACTTCCTATCACGGGTATCACTGTGCCTCTTGTCCTCCTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160369.8 |
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| CDS CCA 90 bp | CTGCATGTATATACATGCACCATGTACATTCTTGGTTGCCCTCAGTaGTCAAAAGAGGGCACTGGATCCCCTGGAACCCTGCACAGGGCA | + |
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Preference number: 5 (lower is better) Translates to: LHVYTCTMYILGCPQ*SKEGTGSPGTLHRA Trigger: TGCCCTGTGCAGGGTTCCAGGGGATCCAGTGCCCTCTTTTGACCACTGAGGGCAACCAAGAATGTACATGGTGCATGTATATACATGCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS GCA 90 bp | GCTGGGATGGTGGGATTCCGTGACGATCTGAATAAGGGCTTGACCTaGATGTATATACATGCACCATGTACATTCTTGGTTGCCCTCAGT | + |
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Preference number: 5 (lower is better) Translates to: AGMVGFRDDLNKGLT*MYIHAPCTFLVALS Trigger: ACTGAGGGCAACCAAGAATGTACATGGTGCATGTATATACATGCAGGTCAAGCCCTTATTCAGATCGTCACGGAATCCCACCATCCCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS TCA 72 bp | CCTGGAGGCTGGGTGATGGCGTACTCAGCATACGTCTaGGGGGCCACGTGGGCTGAGGTTGCTGGGATGGTG | + |
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Preference number: 6 (lower is better) Translates to: PGGWVMAYSAYV*GATWAEVAGMV Trigger: CACCATCCCAGCAACCTCAGCCCACGTGGCCCCTCAGACGTATGCTGAGTACGCCATCACCCAGCCTCCAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 |
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| CDS GCA 72 bp | CTGCTCATACGCCTTGTAGGTCTCCAGGTACCGCCCTaGTTCCTCTGCACTCCAGGCCAGGACCAGGGTGCA | + |
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Preference number: 6 (lower is better) Translates to: LLIRLVGLQVPP*FLCTPGQDQGA Trigger: TGCACCCTGGTCCTGGCCTGGAGTGCAGAGGAAGCAGGGCGGTACCTGGAGACCTACAAGGCGTATGAGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 |
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| CDS CAA 90 bp | AGGACCAGGGTGCAGTCAGCCAAGATGCACATCTTAGCCAGCTCCTaGAGAGCCTGCTGGGGATCACATCCACTTGAACCAGCAGCACAC | + |
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Preference number: 6 (lower is better) Translates to: RTRVQSAKMHILASS*RACWGSHPLEPAAH Trigger: GTGTGCTGCTGGTTCAAGTGGATGTGATCCCCAGCAGGCTCTCAAGGAGCTGGCTAAGATGTGCATCTTGGCTGACTGCACCCTGGTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000176818.2 |
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| CDS GCA 72 bp | AATCGGGAATCACCTCACCGAATTCCCAGGGCACATTaGGCACAAACTTCAACACGGGGTTGCCCCTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: NRESPHRIPRAH*AQTSTRGCPSA Trigger: GGCAGAGGGGCAACCCCGTGTTGAAGTTTGTGCGCAATGTGCCCTGGGAATTCGGTGAGGTGATTCCCGATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 ENSMUST00000176818.2 |
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| CDS GCA 72 bp | AGTGGTCAAAAGAGGGCACTGGATCCCCTGGAACCCTaGACAGGGCACCTCTTCTTCCTCCAGTGGGATAAC | + |
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Preference number: 6 (lower is better) Translates to: SGQKRALDPLEP*TGHLFFLQWDN Trigger: GTTATCCCACTGGAGGAAGAAGAGGTGCCCTGTGCAGGGTTCCAGGGGATCCAGTGCCCTCTTTTGACCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS CAA 90 bp | TCACCGAATTCCCAGGGCACATTGCGCACAAACTTCAACACGGGGTaGCCCCTCTGCCTCGGGCTCACGATGATGCTATTAGACTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: SPNSQGTLRTNFNTG*PLCLGLTMMLLDFA Trigger: AGCAAAGTCTAATAGCATCATCGTGAGCCCGAGGCAGAGGGGCAACCCCGTGTTGAAGTTTGTGCGCAATGTGCCCTGGGAATTCGGTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 ENSMUST00000176818.2 |
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| CDS GCA 72 bp | ACATTGCGCACAAACTTCAACACGGGGTTGCCCCTCTaGCTCGGGCTCACGATGATGCTATTAGACTTTGCT | + |
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Preference number: 6 (lower is better) Translates to: TLRTNFNTGLPL*LGLTMMLLDFA Trigger: AGCAAAGTCTAATAGCATCATCGTGAGCCCGAGGCAGAGGGGCAACCCCGTGTTGAAGTTTGTGCGCAATGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000003645.9 ENSMUST00000160369.8 ENSMUST00000176818.2 |
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| CDS GCA 72 bp | CTGCATGTATATACATGCACCATGTACATTCTTGGTTaGCCTCAGTGGTCAAAAGAGGGCACTGGATCCCCT | + |
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Preference number: 6 (lower is better) Translates to: LHVYTCTMYILG*PQWSKEGTGSP Trigger: AGGGGATCCAGTGCCCTCTTTTGACCACTGAGGGCAACCAAGAATGTACATGGTGCATGTATATACATGCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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| CDS GCA 72 bp | GTGGGATTCCGTGACGATCTGAATAAGGGCTTGACCTaGATGTATATACATGCACCATGTACATTCTTGGTT | + |
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Preference number: 6 (lower is better) Translates to: VGFRDDLNKGLT*MYIHAPCTFLV Trigger: AACCAAGAATGTACATGGTGCATGTATATACATGCAGGTCAAGCCCTTATTCAGATCGTCACGGAATCCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161378.2 |
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