RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for ERBB2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000062312

Ensembl transcript IDs: ENSMUST00000058295.6

Found 231 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGAGCGAGGTTCCTCAGGGCACGTTCCTGGCATAGCCGGCTGCCCTaGATGTCATGTGGCCAGAGGACCTTCTCCCTGCTTTGTGGCGGG +
Preference number: 1 (lower is better)
Translates to: RARFLRARSWHSRLP*MSCGQRTFSLLCGG
Trigger: CCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGCAGCCGGCTATGCCAGGAACGTGCCCTGAGGAACCTCGCTCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR GCA 90 bp ATAGCCGGCTGCCCTGGATGTCATGTGGCCAGAGGACCTTCTCCCTaGTTTGTGGCGGGCGATGGAGACCACAAGTTAGGCCTTCCTTCC +
Preference number: 1 (lower is better)
Translates to: IAGCPGCHVARGPSP*FVAGDGDHKLGLPS
Trigger: GGAAGGAAGGCCTAACTTGTGGTCTCCATCGCCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGCAGCCGGCTAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR GCA 90 bp TGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATaGACGTGCCTCAGTCCTAGTGGGGTGTCCTGCTCCCAGGATATT +
Preference number: 1 (lower is better)
Translates to: CTKTSLGASAVPLLG*TCLSPSGVSCSQDI
Trigger: AATATCCTGGGAGCAGGACACCCCACTAGGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CCA 90 bp ATGTCATGTGGCCAGAGGACCTTCTCCCTGCTTTGTGGCGGGCGATaGAGACCACAAGTTAGGCCTTCCTTCCCCACTCTGAAGACAGAG +
Preference number: 1 (lower is better)
Translates to: MSCGQRTFSLLCGGR*RPQVRPSFPTLKTE
Trigger: CTCTGTCTTCAGAGTGGGGAAGGAAGGCCTAACTTGTGGTCTCCATCGCCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCCACATGACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CCA 90 bp TTCCTGGATGGATACTTCTTTCTAAGGCAAGGAAAACAAGTCACATaGCAATGCTCTCCACAAGCTCCCCTCTCCCACTGGGAGGACAGG +
Preference number: 1 (lower is better)
Translates to: FLDGYFFLRQGKQVT*QCSPQAPLSHWEDR
Trigger: CCTGTCCTCCCAGTGGGAGAGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAGAAGTATCCATCCAGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR TCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCGTAATCCTCTGGGGCTaGACAGTGTGCTGTCTCTTC +
Preference number: 2 (lower is better)
Translates to: RPVWVQVLSPSWDARASVVILWG*TVCCLF
Trigger: GAAGAGACAGCACACTGTTCAGCCCCAGAGGATTAC...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR CCA 90 bp TGCCAAAGGGCCTTCAGAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCGCCCTGGATGTCATGTaGCCAGAGGACCTTCTCCCT +
Preference number: 2 (lower is better)
Translates to: CQRAFRRNPNSPVPQAQSALDVM*PEDLLP
Trigger: AGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGC...GCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTCTGAAGGCCCTTTGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR TCA 90 bp CACTCAGGATTGAAGCATCGAGCGAGGTTCCTCAGGGCACGTTCCTGGCATAGCCTTCCTTCCCCACTCTaGAGACAGAGGATGTCTGCA +
Preference number: 2 (lower is better)
Translates to: HSGLKHRARFLRARSWHSLPSPL*RQRMSA
Trigger: TGCAGACATCCTCTGTCTTCAGAGTGGGGAAGGAAG...GCTATGCCAGGAACGTGCCCTGAGGAACCTCGCTCGATGCTTCAATCCTGAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR GCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTGGGGCCTCCTCCCTTaGAGGCTGAGCTTCCCTCAG +
Preference number: 2 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTWGLLP*RLSFPQ
Trigger: CTGAGGGAAGCTCAGCCTGCAAGGGAGGAGGCCCCA...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR GCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCAGTCCCCCTCTTGGGATaGACGTGCCTCAGTCCTAGT +
Preference number: 2 (lower is better)
Translates to: GPGPLSDIGWGPVILQISVPLLG*TCLSPS
Trigger: ACTAGGACTGAGGCACGTGCATCCCAAGAGGGGGAC...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR TCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGTCCTCCCTTGCAGGCTaGGCTTCCCTCAGTCTTCAG +
Preference number: 2 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWSSLAG*ASLSLQ
Trigger: CTGAAGACTGAGGGAAGCTCAGCCTGCAAGGGAGGA...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR TCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTAACCACTCAGGATTaGAGCATCGAGCGAGGTTCC +
Preference number: 2 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTLTTQD*SIERGS
Trigger: GGAACCTCGCTCGATGCTTCAATCCTGAGTGGTTAA...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR GCA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCTTTTACAAATCTCATTaGAAATGGAGAAAGGGGACA +
Preference number: 2 (lower is better)
Translates to: VSNFWKISTHSLQEELCVFYKSH*KWRKGT
Trigger: TGTCCCCTTTCTCCATTTGCAATGAGATTTGTAAAA...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR GCA 72 bp ACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATaGACGTGCCTCAGTCCTAGTGGGGTGTCCTGCTCC +
Preference number: 3 (lower is better)
Translates to: TSLGASAVPLLG*TCLSPSGVSCS
Trigger: GGAGCAGGACACCCCACTAGGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CCA 72 bp GTCCTAGTGGGGTGTCCTGCTCCCAGGATATTCACCTaGGGCCTCCTCCCTTGCAGGCTGAGCTTCCCTCAG +
Preference number: 3 (lower is better)
Translates to: VLVGCPAPRIFT*GLLPCRLSFPQ
Trigger: CTGAGGGAAGCTCAGCCTGCAAGGGAGGAGGCCCCAGGTGAATATCCTGGGAGCAGGACACCCCACTAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR GCA 72 bp TTGGGATGCACGTGCCTCAGTCCTAGTGGGGTGTCCTaGTCCCAGGATATTCACCTGGGGCCTCCTCCCTTG +
Preference number: 3 (lower is better)
Translates to: LGCTCLSPSGVS*SQDIHLGPPPL
Trigger: CAAGGGAGGAGGCCCCAGGTGAATATCCTGGGAGCAGGACACCCCACTAGGACTGAGGCACGTGCATCCCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CCA 72 bp GGCCAGAGGACCTTCTCCCTGCTTTGTGGCGGGCGATaGAGACCACAAGTTAGGCCTTCCTTCCCCACTCTG +
Preference number: 3 (lower is better)
Translates to: GQRTFSLLCGGR*RPQVRPSFPTL
Trigger: CAGAGTGGGGAAGGAAGGCCTAACTTGTGGTCTCCATCGCCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CCA 72 bp TTCCTCAGGGCACGTTCCTGGCATAGCCGGCTGCCCTaGATGTCATGTGGCCAGAGGACCTTCTCCCTGCTT +
Preference number: 3 (lower is better)
Translates to: FLRARSWHSRLP*MSCGQRTFSLL
Trigger: AAGCAGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGCAGCCGGCTATGCCAGGAACGTGCCCTGAGGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR GCA 72 bp TGCCCTGGATGTCATGTGGCCAGAGGACCTTCTCCCTaGTTTGTGGCGGGCGATGGAGACCACAAGTTAGGC +
Preference number: 3 (lower is better)
Translates to: CPGCHVARGPSP*FVAGDGDHKLG
Trigger: GCCTAACTTGTGGTCTCCATCGCCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CCA 72 bp GAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCACTaGACCCTACAGTCTGTCAGGGCAGTCAGGGTCTGT +
Preference number: 3 (lower is better)
Translates to: EPREPGQVRNTH*TLQSVRAVRVC
Trigger: ACAGACCCTGACTGCCCTGACAGACTGTAGGGTCCAGTGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR CAA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTCTGGGGCCTCCTCCCTaGCAGGCTGAGCTTCCCTCA +
Preference number: 3 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTLGPPP*QAELPS
Trigger: TGAGGGAAGCTCAGCCTGCAAGGGAGGAGGCCCCAG...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR TCA 72 bp GGGGGTAGCCTTGGTATGAGTGTGTCCAACGGAGAATaGCCCTGTTGCCAAAGGGCCTTCAGAAGGAATCCT +
Preference number: 3 (lower is better)
Translates to: GGSLGMSVSNGE*PCCQRAFRRNP
Trigger: AGGATTCCTTCTGAAGGCCCTTTGGCAACAGGGTCATTCTCCGTTGGACACACTCATACCAAGGCTACCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR CAA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTCGGAGAATGACCCTGTaGCCAAAGGGCCTTCAGAAG +
Preference number: 3 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPRRMTL*PKGLQK
Trigger: CTTCTGAAGGCCCTTTGGCAACAGGGTCATTCTCCG...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR-3UTR CAA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTATTTTACAAATCTCATaGCAAATGGAGAAAGGGGAC +
Preference number: 3 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCILQIS*QMEKGD
Trigger: GTCCCCTTTCTCCATTTGCAATGAGATTTGTAAAAT...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGACACTGGGTGGGCCCTaGCCCCCAGCAGTGCCCACG +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRTLGGP*PPAVPT
Trigger: CGTGGGCACTGCTGGGGGCCAGGGCCCACCCAGTGT...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGACGAGCTGCGGTGTCTaGGGTGGGCTGTGCTCCCAG +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRTSCGV*GGLCSQ
Trigger: CTGGGAGCACAGCCCACCGCAGACACCGCAGCTCGT...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCAGGCGGAGGACCCTCTaGGGTCAAGGGAGACTGAGG +
Preference number: 4 (lower is better)
Translates to: DQSGCKCCPPLGMHVPQSRRRTL*GQGRLR
Trigger: CCTCAGTCTCCCTTGACCCCAGAGGGTCCTCCGCCT...GGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp CTGCCCTGGATGTCATGTGGCCAGAGGACCTTCTCCCTGCTTTGTGGCGGGCGATGGCCCCGGAGGAACTaGCTGCAGTTGACACACTGG +
Preference number: 4 (lower is better)
Translates to: LPWMSCGQRTFSLLCGGRWPRRN*LQLTHW
Trigger: CCAGTGTGTCAACTGCAGTCAGTTCCTCCGGGGCCA...TCGCCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp CTCAGGGCACGTTCCTGGCATAGCCGGCTGCCCTGGATGTCATGTGGCCAGAGGCTCCACACATCACTCTaGTGGGTGAACCGGCGTCTG +
Preference number: 4 (lower is better)
Translates to: LRARSWHSRLPWMSCGQRLHTSL*WVNRRL
Trigger: CAGACGCCGGTTCACCCATCAGAGTGATGTGTGGAG...CCTCTGGCCACATGACATCCAGGGCAGCCGGCTATGCCAGGAACGTGCCCTGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGCTGTGGAGTAGGGCCTaGTGCGGGTTCCGGAAGAGC +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRLWSRA*CGFRKS
Trigger: GCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAG...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp CTGCCCTGGATGTCATGTGGCCAGAGGACCTTCTCCCTGCTTTGTGGCGGGCGAAGTGCCGAAGGCTCCTaGCCCAAGCACCTTCAGCTT +
Preference number: 4 (lower is better)
Translates to: LPWMSCGQRTFSLLCGGRSAEGS*PKHLQL
Trigger: AAGCTGAAGGTGCTTGGGTCAGGAGCCTTCGGCACT...TCGCCCGCCACAAAGCAGGGAGAAGGTCCTCTGGCCACATGACATCCAGGGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCCCAATGCCATCCACTTaGTGGGCACCTTGCCCCCAT +
Preference number: 4 (lower is better)
Translates to: DQSGCKCCPPLGMHVPQSPMPST*WAPCPH
Trigger: ATGGGGGCAAGGTGCCCATCAAGTGGATGGCATTGG...GGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCCTGAGGCCGAACCTCTaGCTGGTTCACATACTCGGG +
Preference number: 4 (lower is better)
Translates to: DQSGCKCCPPLGMHVPQSLRPNL*LVHILG
Trigger: CCCGAGTATGTGAACCAGCCAGAGGTTCGGCCTCAG...GGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GAGCCAGGCCAGGTAAGGAATACCCACTGGACCCTACAGTCTGTCAGGGCAGTCCGTAGCCCCAGTGAGTaGATCCCCAGGCCTTGCAAC +
Preference number: 4 (lower is better)
Translates to: EPGQVRNTHWTLQSVRAVRSPSE*IPRPCN
Trigger: GTTGCAAGGCCTGGGGATTCACTCACTGGGGCTACG...GACTGCCCTGACAGACTGTAGGGTCCAGTGGGTATTCCTTACCTGGCCTGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GAGCCAGGCCAGGTAAGGAATACCCACTGGACCCTACAGTCTGTCAGGGCAGTCTGTCAAAGGCTGGGCTaGAGGCAGGAGAAGGGTGGG +
Preference number: 4 (lower is better)
Translates to: EPGQVRNTHWTLQSVRAVCQRLG*RQEKGG
Trigger: CCCACCCTTCTCCTGCCTTCAGCCCAGCCTTTGACA...GACTGCCCTGACAGACTGTAGGGTCCAGTGGGTATTCCTTACCTGGCCTGGCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCCCTCACATACTCCCTaGGGAGCCCCTTCCATACTC +
Preference number: 4 (lower is better)
Translates to: RPVWVQVLSPSWDARASVPSHTP*GAPSIL
Trigger: GAGTATGGAAGGGGCTCCCCAGGGAGTATGTGAGGG...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGATGACCACAAAGCGCTaGGGGTCCCTTGCCATACGG +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRMTTKR*GSLAIR
Trigger: CCGTATGGCAAGGGACCCCCAGCGCTTTGTGGTCAT...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCGGCTCTGCAGTCCTTTaGTTACCCCCACTGCCAGGT +
Preference number: 4 (lower is better)
Translates to: RPVWVQVLSPSWDARASVGSAVL*LPPLPG
Trigger: ACCTGGCAGTGGGGGTAACCAAAGGACTGCAGAGCC...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGTTTAGGATCCGCATCTaGGCCTGGTTGGGCACAGCT +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRFRIRI*AWLGTA
Trigger: AGCTGTGCCCAACCAGGCTCAGATGCGGATCCTAAA...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCTCGGAGGTGCTCCATaGCCAGACCATAGCATACTC +
Preference number: 4 (lower is better)
Translates to: RPVWVQVLSPSWDARASVLGGAP*PDHSIL
Trigger: GAGTATGCTATGGTCTGGGCATGGAGCACCTCCGAG...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CTCAGGGCACGTTCCTGGCATAGCCGGCTGCCCTGGATGTCATGTGGCCAGAGGGCTCTCCGGCAAAAATaGCAGGCTCCCAAAGATCTT +
Preference number: 4 (lower is better)
Translates to: LRARSWHSRLPWMSCGQRALRQK*QAPKDL
Trigger: AAGATCTTTGGGAGCCTGGCATTTTTGCCGGAGAGC...CCTCTGGCCACATGACATCCAGGGCAGCCGGCTATGCCAGGAACGTGCCCTGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCTGGCATGGCAGACAGTaGTTGCCCCTCACATACTCC +
Preference number: 4 (lower is better)
Translates to: RPVWVQVLSPSWDARASVWHGRQ*LPLTYS
Trigger: GGAGTATGTGAGGGGCAAGCACTGTCTGCCATGCCA...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCGGGGCAGAGGTAATGTaGGATCCTCACTGTACCGCT +
Preference number: 4 (lower is better)
Translates to: RPVWVQVLSPSWDARASVGAEVM*DPHCTA
Trigger: AGCGGTACAGTGAGGATCCCACATTACCTCTGCCCC...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GAGCCAGGCCAGGTAAGGAATACCCACTGGACCCTACAGTCTGTCAGGGCAGTCTTGTCCTCAAAGAGCTaGGTCCCTCTCACGATGCGC +
Preference number: 4 (lower is better)
Translates to: EPGQVRNTHWTLQSVRAVLSSKS*VPLTMR
Trigger: GCGCATCGTGAGAGGGACTCAGCTCTTTGAGGACAA...GACTGCCCTGACAGACTGTAGGGTCCAGTGGGTATTCCTTACCTGGCCTGGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCTCACAGATACCACTATaGTTGAAGTGGAGGCAGGCC +
Preference number: 4 (lower is better)
Translates to: DQSGCKCCPPLGMHVPQSSQIPL*LKWRQA
Trigger: GGCCTGCCTCCACTTCAATCATAGTGGTATCTGTGA...GGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp CTCAGGGCACGTTCCTGGCATAGCCGGCTGCCCTGGATGTCATGTGGCCAGAGGTGTATAGGTAACCTGTaGTCTCCTCCAGGGTTTCGA +
Preference number: 4 (lower is better)
Translates to: LRARSWHSRLPWMSCGQRCIGNL*SPPGFR
Trigger: TCGAAACCCTGGAGGAGATCACAGGTTACCTATACA...CCTCTGGCCACATGACATCCAGGGCAGCCGGCTATGCCAGGAACGTGCCCTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp CACTCAGGATTGAAGCATCGAGCGAGGTTCCTCAGGGCACGTTCCTGGCATAGCGTGCAGATTGGAGGCTaGGGTAGGCGTTCTCCCTTC +
Preference number: 4 (lower is better)
Translates to: HSGLKHRARFLRARSWHSVQIGG*GRRSPF
Trigger: GAAGGGAGAACGCCTACCTCAGCCTCCAATCTGCAC...GCTATGCCAGGAACGTGCCCTGAGGAACCTCGCTCGATGCTTCAATCCTGAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCATCATCCTCCAGCAGTaGACGGTAGAAGGTGCTGTC +
Preference number: 4 (lower is better)
Translates to: RPVWVQVLSPSWDARASVIILQQ*TVEGAV
Trigger: GACAGCACCTTCTACCGTTCACTGCTGGAGGATGAT...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCAGGAGAAGGGTGGGGCTaGGAGGCAGTGCCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: GPGPLSDIGWGPVILQISGEGWG*EAVPAL
Trigger: CAGAGCAGGCACTGCCTCTCAGCCCCACCCTTCTCC...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGAGGACCCTGCTCCGATaGGTTCTGGTCCCAGTAATA +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRRTLLR*VLVPVI
Trigger: TATTACTGGGACCAGAACTCATCGGAGCAGGGTCCT...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAGCTTCCCTCAGTCTTCAGAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCAGCTGGCTCTCTGCTCTaGTGGGCAGCCTCGTTCGTC +
Preference number: 4 (lower is better)
Translates to: ELPSVFRTKRARPGKEYPAGSLL*WAASFV
Trigger: GACGAACGAGGCTGCCCAGCAGAGCAGAGAGCCAGC...TGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTCTGAAGACTGAGGGAAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAGCTTCCCTCAGTCTTCAGAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCAACTGGGCTGGCTCTCTaGTCTGCTGGGCAGCCTCGT +
Preference number: 4 (lower is better)
Translates to: ELPSVFRTKRARPGKEYPTGLAL*SAGQPR
Trigger: ACGAGGCTGCCCAGCAGAGCAGAGAGCCAGCCCAGT...TGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTCTGAAGACTGAGGGAAGCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp CAAAGGGCCTTCAGAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAATTCTGGGGTTCTGCCTaGGGCGGCGGTGGTGACGTT +
Preference number: 4 (lower is better)
Translates to: QRAFRRNPNSPVPQAQSQFWGSA*GGGGDV
Trigger: AACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAA...TTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTCTGAAGGCCCTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGAGGTCCACACATGAGTaGGTGCAGTTGATGGGGCAT +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRRSTHE*VQLMGH
Trigger: ATGCCCCATCAACTGCACCCACTCATGTGTGGACCT...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CAA 72 bp TCCAGGAGGAGCTGTGTGTCAGATGAGCAATACGGTTaGACCCGGCCCGGGACCACTCTCAGACATAGGCTG +
Preference number: 4 (lower is better)
Translates to: SRRSCVSDEQYG*TRPGTTLRHRL
Trigger: CAGCCTATGTCTGAGAGTGGTCCCGGGCCGGGTCAAACCGTATTGCTCATCTGACACACAGCTCCTCCTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAGCTTCCCTCAGTCTTCAGAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCAGCCAGGCAGTCAGAATaGTTGGGACCCGTGCAGCCT +
Preference number: 4 (lower is better)
Translates to: ELPSVFRTKRARPGKEYPARQSE*LGPVQP
Trigger: AGGCTGCACGGGTCCCAAGCATTCTGACTGCCTGGC...TGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTCTGAAGACTGAGGGAAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAGCTTCCCTCAGTCTTCAGAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCAGGGGACAGACCAGAGTaGAGGATCCCACTTCCGTGG +
Preference number: 4 (lower is better)
Translates to: ELPSVFRTKRARPGKEYPGDRPE*RIPLPW
Trigger: CCACGGAAGTGGGATCCTGCACTCTGGTCTGTCCCC...TGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTCTGAAGACTGAGGGAAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGCCTGGCCCCCAGCAGTaGCCACGGGCACACAGTGAG +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWPGPQQ*PRAHSE
Trigger: CTCACTGTGTGCCCGTGGGCACTGCTGGGGGCCAGG...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAGCTTCCCTCAGTCTTCAGAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCAACACTCGGGGTGGCATaGCAGACAGTGCTTGCCCCT +
Preference number: 4 (lower is better)
Translates to: ELPSVFRTKRARPGKEYPTLGVA*QTVLAP
Trigger: AGGGGCAAGCACTGTCTGCCATGCCACCCCGAGTGT...TGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTCTGAAGACTGAGGGAAGCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGGCAGCAGCCTACGCATaGTATACTTCCGGATCTTCT +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRAAAYA*YTSGSS
Trigger: AGAAGATCCGGAAGTATACCATGCGTAGGCTGCTGC...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp TGCCAAAGGGCCTTCAGAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCATGAGGGCCGGGCAGTaGAGCTCACAGATACCACTA +
Preference number: 4 (lower is better)
Translates to: CQRAFRRNPNSPVPQAQSMRAGQ*SSQIPL
Trigger: TAGTGGTATCTGTGAGCTGCACTGCCCGGCCCTCAT...GCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTCTGAAGGCCCTTTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CAAAGGGCCTTCAGAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAGTGAACGGTAGAAGGTaGTGTCCATGGGGCTGGAGG +
Preference number: 4 (lower is better)
Translates to: QRAFRRNPNSPVPQAQSQVNGRR*CPWGWR
Trigger: CCTCCAGCCCCATGGACAGCACCTTCTACCGTTCAC...TTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTCTGAAGGCCCTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCACGAAGCATGTCCAGGTaGGTCTCAGGACTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: GPGPLSDIGWGPVILQISRSMSR*VSGLAG
Trigger: CCCTGCCAGTCCTGAGACCCACCTGGACATGCTTCG...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGCACCAGCAGGTCGGATaGGAGGCGGAGGACCCTCTG +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWHQQVG*EAEDPL
Trigger: CAGAGGGTCCTCCGCCTCCCATCCGACCTGCTGGTG...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GAGCCAGGCCAGGTAAGGAATACCCACTGGACCCTACAGTCTGTCAGGGCAGTCCATACGGGAGAATTCTaGTACCAACTCCCGGAATCT +
Preference number: 4 (lower is better)
Translates to: EPGQVRNTHWTLQSVRAVHTGEF*YQLPES
Trigger: AGATTCCGGGAGTTGGTATCAGAATTCTCCCGTATG...GACTGCCCTGACAGACTGTAGGGTCCAGTGGGTATTCCTTACCTGGCCTGGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCAAATGCTTGGGACCCGTaGAGCCTGCAGCACACTGCT +
Preference number: 4 (lower is better)
Translates to: GPGPLSDIGWGPVILQISNAWDP*SLQHTA
Trigger: AGCAGTGTGCTGCAGGCTGCACGGGTCCCAAGCATT...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAGCTTCCCTCAGTCTTCAGAACCAAGAGAGCCAGGCCAGGTAAGGAATACCCAGCGCAACCTCTGCAGTaGGACGTGTTTCACTCGGTT +
Preference number: 4 (lower is better)
Translates to: ELPSVFRTKRARPGKEYPAQPLQ*DVFHSV
Trigger: AACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGC...TGGGTATTCCTTACCTGGCCTGGCTCTCTTGGTTCTGAAGACTGAGGGAAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AGGGTCTGTAATCCTCTGGGGCTGAACAGTGTGCTGTCTCTTCCGGCCAGGCGGTTGCCCCCATCTGCATaGTATTCAGTCTCATCAATG +
Preference number: 4 (lower is better)
Translates to: RVCNPLGLNSVLSLPARRLPPSA*YSVSSM
Trigger: CATTGATGAGACTGAATACCATGCAGATGGGGGCAA...CCGCCTGGCCGGAAGAGACAGCACACTGTTCAGCCCCAGAGGATTACAGACCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGTCCTGCAGGAATaGGAGGCTGGCATTGGCGGG +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWDVLQE*EAGIGG
Trigger: CCCGCCAATGCCAGCCTCTCATTCCTGCAGGACATC...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTGGCAGTCAGAATGCTTaGGACCCGTGCAGCCTGCAG +
Preference number: 4 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPGSQNA*DPCSLQ
Trigger: CTGCAGGCTGCACGGGTCCCAAGCATTCTGACTGCC...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCAGCAGTTGATGGGGCATaGCTGACATATGCCCTCCTC +
Preference number: 4 (lower is better)
Translates to: GPGPLSDIGWGPVILQISAVDGA*LTYALL
Trigger: GAGGAGGGCATATGTCAGCCATGCCCCATCAACTGC...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGGGCACAGCTCCACTaGGCGTCAGCGGCTCCACCA +
Preference number: 4 (lower is better)
Translates to: NCLKLLEDLYTLTPGGAVWAQLH*ASAAPP
Trigger: TGGTGGAGCCGCTGACGCCCAGTGGAGCTGTGCCCA...CACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTGAGCCAGTGGAGATCTaGGGGGCTCTTCTTCCGAGG +
Preference number: 4 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTEPVEI*GALLPR
Trigger: CCTCGGAAGAAGAGCCCCCCAGATCTCCACTGGCTC...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCACTCGGTTGTGAGCGATaGGCATGTATCCCTGGACTT +
Preference number: 4 (lower is better)
Translates to: GPGPLSDIGWGPVILQISLGCER*ACIPGL
Trigger: AAGTCCAGGGATACATGCTCATCGCTCACAACCGAG...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCAAGATACCACTATGATTaGAGTGGAGGCAGGCCAGGC +
Preference number: 4 (lower is better)
Translates to: GPGPLSDIGWGPVILQISRYHYD*SGGRPG
Trigger: GCCTGGCCTGCCTCCACTTCAATCATAGTGGTATCT...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGTTCCGTCCTCAGCTGTaGCCTCTTGGTTGTTCGGGG +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWFRPQL*PLGCSG
Trigger: CCCCGAACAACCAAGAGGTCACAGCTGAGGACGGAA...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTGGAACTGACTGCAGTTaGCACACTGGGTGGGCCCTG +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFGTDCS*HTGWAL
Trigger: CAGGGCCCACCCAGTGTGTCAACTGCAGTCAGTTCC...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGAGTCCTCGTTCTGGATaGCCACAAAGCGCTGGGGGT +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWSPRSG*PQSAGG
Trigger: ACCCCCAGCGCTTTGTGGTCATCCAGAACGAGGACT...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTGAGTCCCTCTCACGATaGGCAACCTCTGCAGTGGGA +
Preference number: 4 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPESLSR*ATSAVG
Trigger: TCCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTC...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGTGAGACTTCGAAGCTaGAGCTCCCGCAGCCCTTCT +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWVRLRS*SSRSPS
Trigger: AGAAGGGCTGCGGGAGCTGCAGCTTCGAAGTCTCAC...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CAAAGGGCCTTCAGAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAATGTAGACGTCGATGGTaGAGATTGGAGGCTGAGGTA +
Preference number: 4 (lower is better)
Translates to: QRAFRRNPNSPVPQAQSQCRRRW*RLEAEV
Trigger: TACCTCAGCCTCCAATCTGCACCATCGACGTCTACA...TTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTCTGAAGGCCCTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTGCAGGAATGAGAGGCTaGCATTGGCGGGCAGGTAGG +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFAGMRG*HWRAGR
Trigger: CCTACCTGCCCGCCAATGCCAGCCTCTCATTCCTGC...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGCACTTGGAGATGCTCTaGCTTCAGTGGGGCAACGCC +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWHLEML*LQWGNA
Trigger: GGCGTTGCCCCACTGAAGCCAGAGCATCTCCAAGTG...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCAGGGCTGAGGTCATGTaGAGAGAGGCTCTGCAGTCC +
Preference number: 4 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLRAEVM*REALQS
Trigger: GGACTGCAGAGCCTCTCTCCACATGACCTCAGCCCT...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTCGTGGTTGGGACTCTTaGCTAGCACGTTTCGGGCAG +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFRGWDS*LARFGQ
Trigger: CTGCCCGAAACGTGCTAGTCAAGAGTCCCAACCACG...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTCAGCCTGCAGCACACTaGTCATGGCAACAGTCAGTG +
Preference number: 4 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTQPAAH*SWQQSV
Trigger: CACTGACTGTTGCCATGAGCAGTGTGCTGCAGGCTG...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTCTCCAGCACAGGGCTTaGTGCATTTCTCACACCGCT +
Preference number: 4 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTLQHRA*CISHTA
Trigger: AGCGGTGTGAGAAATGCAGCAAGCCCTGTGCTGGAG...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGATGGCAGACAGTGCTTaGCCCTCACATACTCCCTGG +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWMADSA*PSHTPW
Trigger: CCAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCAT...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTAGCTGTGTCACCAGCTaGACTGTGGATGTCAGGCAG +
Preference number: 4 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPSCVTS*TVDVRQ
Trigger: CTGCCTGACATCCACAGTGCAGCTGGTGACACAGCT...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTGAGGTTGTCAAAGGCTaGGCTGAAGGCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTEVVKG*AEGRRR
Trigger: CCTTCTCCTGCCTTCAGCCCAGCCTTTGACAACCTC...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGCAGGGTTCTCTGCAGTaGGGGTCCCTTCAAAGGTAC +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWQGSLQ*GSLQRY
Trigger: GTACCTTTGAAGGGACCCCCACTGCAGAGAACCCTG...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTACTTCCTGGATGTCCTaGAGGAATGAGAGGCTGGCA +
Preference number: 4 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPTSWMS*RNERLA
Trigger: TGCCAGCCTCTCATTCCTGCAGGACATCCAGGAAGT...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCCACGTTCTCCCCATCTaGGATCCAGATGCCCTTGTA +
Preference number: 4 (lower is better)
Translates to: VSNFWKISTHSLQEELCVHVLPI*DPDALV
Trigger: TACAAGGGCATCTGGATCCCAGATGGGGAGAACGTG...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTGAGGCGGGACACATATaGAGAACCCACACCAGCCAT +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFEAGHI*RTHTSH
Trigger: ATGGCTGGTGTGGGTTCTCCATATGTGTCCCGCCTC...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCAGGGATCTCCCGAGCTaGGATCCCATCGTAAGGTTT +
Preference number: 4 (lower is better)
Translates to: VSNFWKISTHSLQEELCVRDLPS*DPIVRF
Trigger: AAACCTTACGATGGGATCCCAGCTCGGGAGATCCCT...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTCCTAAGTCCTCGTTCTaGATGACCACAAAGCGCTGG +
Preference number: 4 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTPKSSF*MTTKRW
Trigger: CCAGCGCTTTGTGGTCATCCAGAACGAGGACTTAGG...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCAGGCAGTGCCTGCTCTaGGTGCTAAGTATTCAGGGT +
Preference number: 4 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLRQCLL*VLSIQG
Trigger: ACCCTGAATACTTAGCACCCAGAGCAGGCACTGCCT...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCCCTTCAAGATCTCTGTaGGACTTCGAAGCTGCAGCT +
Preference number: 4 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLPSRSL*DFEAAA
Trigger: AGCTGCAGCTTCGAAGTCTCACAGAGATCTTGAAGG...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTCTCTCACCCCAACAGTaGTTGTCTTTGCAGGTTGGG +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFLSPQQ*LSLQVG
Trigger: CCCAACCTGCAAAGACAATCACTGTTGGGGTGAGAG...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTAGCGACCCTCAGGGTTaGGCATGGACTCGAAGGTGT +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCSDPQG*AWTRRC
Trigger: ACACCTTCGAGTCCATGCTCAACCCTGAGGGTCGCT...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGCAGCACAGGGCTTGCTaGATTTCTCACACCGCTGTG +
Preference number: 4 (lower is better)
Translates to: NCLKLLEDLYTLTPGGAVQHRAC*ISHTAV
Trigger: CACAGCGGTGTGAGAAATGCAGCAAGCCCTGTGCTG...CACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTTTTGGTTACCCCCACTaGCAGGTCACCATCAAACAC +
Preference number: 4 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPFGYPH*QVTIKH
Trigger: GTGTTTGATGGTGACCTGGCAGTGGGGGTAACCAAA...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGCAGCACACTGCTCATaGCAACAGTCAGTGGGCAGC +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCAAHCS*QQSVGS
Trigger: GCTGCCCACTGACTGTTGCCATGAGCAGTGTGCTGC...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCGGTAGCTCATCCCCTTaGCAATCTGAACACACCAGT +
Preference number: 4 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLGSSSP*QSEHTS
Trigger: ACTGGTGTGTTCAGATTGCCAAGGGGATGAGCTACC...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTTCATGTAGACGTCGATaGTGCAGATTGGAGGCTGAG +
Preference number: 4 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPSCRRR*CRLEAE
Trigger: CTCAGCCTCCAATCTGCACCATCGACGTCTACATGA...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTTTGATGGGGCATGGCTaGCATATGCCCTCCTCATCC +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCLMGHG*HMPSSS
Trigger: GGATGAGGAGGGCATATGTCAGCCATGCCCCATCAA...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR TCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTTTTCCCTCAACACCTTaGTGGCCACGGGGATTTTCA +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFFPSTP*WPRGFS
Trigger: TGAAAATCCCCGTGGCCATCAAGGTGTTGAGGGAAA...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
48% GC, longest homopolymer 7 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTCCCAAAGATCTTCTTaGAGCCAGCAAACTCCTGGA +
Preference number: 4 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLSQRSS*SQQTPG
Trigger: TCCAGGAGTTTGCTGGCTGCAAGAAGATCTTTGGGA...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGCATCTGGGATCCAGATaGCCTTGTAGACAGTGCCGA +
Preference number: 4 (lower is better)
Translates to: NCLKLLEDLYTLTPGGAVHLGSR*PCRQCR
Trigger: TCGGCACTGTCTACAAGGGCATCTGGATCCCAGATG...CACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTAATGTCCAGCAGCCGTaGCAGCCCGAAGTCGGTAAT +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCNVQQP*QPEVGN
Trigger: ATTACCGACTTCGGGCTGGCACGGCTGCTGGACATT...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTAGTTGTAGGGGCAGGTaGTCACACAGCTGGCACCAA +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCSCRGR*SHSWHQ
Trigger: TTGGTGCCAGCTGTGTGACCACCTGCCCCTACAACT...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGCAGCCAGCAAACTCCTaGATATTGTCACTGGTGATG +
Preference number: 4 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWQPANS*ILSLVM
Trigger: CATCACCAGTGACAATATCCAGGAGTTTGCTGGCTG...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCAGGGTTTCGAACACTTaGAGATGCTCTGGCTTCAGT +
Preference number: 4 (lower is better)
Translates to: VSNFWKISTHSLQEELCVRVSNT*RCSGFS
Trigger: ACTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCT...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp GGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTTAAGACACTGAGGTCTTaGAAGCTCTCTGGCCATGCT +
Preference number: 4 (lower is better)
Translates to: GILTPQSLKPKAKLSQTFKTLRS*KLSGHA
Trigger: AGCATGGCCAGAGAGCTTCCAAGACCTCAGTGTCTT...AAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTTCGAACACTTGGAGATaGTCTGGCTTCAGTGGGGCA +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCSNTWR*SGFSGA
Trigger: TGCCCCACTGAAGCCAGAGCATCTCCAAGTGTTCGA...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTACTCAGGGTTCTCTaGAGTGGGGGTCCCTTCAAA +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCVLRVL*SGGPFK
Trigger: TTTGAAGGGACCCCCACTGCAGAGAACCCTGAGTAC...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTATCCCTGGACTTCCTaGATGTCCTGCAGGAATGAG +
Preference number: 4 (lower is better)
Translates to: NCLKLLEDLYTLTPGGAVYPWTS*MSCRNE
Trigger: CTCATTCCTGCAGGACATCCAGGAAGTCCAGGGATA...CACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CAA 72 bp AGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTTTaGGAAGATCTCTACACACTCACTCCAGGAGGAGCT +
Preference number: 4 (lower is better)
Translates to: SPSSPKPNCLKL*EDLYTLTPGGA
Trigger: AGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR GCA 90 bp AAATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTCACCTTGCCCCCATCTaGATGGTATTCAGTCTCATC +
Preference number: 4 (lower is better)
Translates to: KLSQTFGRSLHTHSRRSCHLAPI*MVFSLI
Trigger: GATGAGACTGAATACCATGCAGATGGGGGCAAGGTG...ACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CCA 90 bp AATTGTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTCGGTAATCTTGACGTaGTTGGGACTCTTGACTAGC +
Preference number: 4 (lower is better)
Translates to: NCLKLLEDLYTLTPGGAVSVILT*LGLLTS
Trigger: GCTAGTCAAGAGTCCCAACCACGTCAAGATTACCGA...CACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
3UTR CAA 72 bp ATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATaGTCTCAAACTTTTGGAAGATCTCTACACACTCAC +
Preference number: 4 (lower is better)
Translates to: ILTPQSLKPKAK*SQTFGRSLHTH
Trigger: GTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp CTTCCGAGGGCTCCAGGCCCAGTGTCAGCTCACCACCGCCACTCCTaGCCGACGAGCTGCGGTGTCTGCGGTGGGCTGTGCTCCCAGTAC +
Preference number: 5 (lower is better)
Translates to: LPRAPGPVSAHHRHS*PTSCGVCGGLCSQY
Trigger: GTACTGGGAGCACAGCCCACCGCAGACACCGCAGCTCGTCGGCCAGGAGTGGCGGTGGTGAGCTGACACTGGGCCTGGAGCCCTCGGAAG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp GCAGGTCGGATGGGAGGCGGAGGACCCTCTGGGGTCAAGGGAGACTaGGGCCGAACCTCTGGCTGGTTCACATACTCGGGCTGGGGGCTG +
Preference number: 5 (lower is better)
Translates to: AGRMGGGGPSGVKGD*GRTSGWFTYSGWGL
Trigger: CAGCCCCCAGCCCGAGTATGTGAACCAGCCAGAGGTTCGGCCTCAGTCTCCCTTGACCCCAGAGGGTCCTCCGCCTCCCATCCGACCTGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp GCAGCTCCCGCAGCCCTTCTGGGGTTCTGCCTGGGGCGGCGGTGGTaGCGTTGTCCAAAGGGTCTCGGTTGTCTAGCACAGCCAGGGCAT +
Preference number: 5 (lower is better)
Translates to: AAPAALLGFCLGRRW*RCPKGLGCLAQPGH
Trigger: ATGCCCTGGCTGTGCTAGACAACCGAGACCCTTTGGACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGGGCTGCGGGAGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp AGCTCACCACCGCCACTCCTGGCCGACGAGCTGCGGTGTCTGCGGTaGGCTGTGCTCCCAGTACCTAGGGCAGGGTCTGGGGAGAAGAAT +
Preference number: 5 (lower is better)
Translates to: SSPPPLLADELRCLR*AVLPVPRAGSGEKN
Trigger: ATTCTTCTCCCCAGACCCTGCCCTAGGTACTGGGAGCACAGCCCACCGCAGACACCGCAGCTCGTCGGCCAGGAGTGGCGGTGGTGAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 90 bp GTGGAGGCAGGCCAGGCAGTCAGAATGCTTGGGACCCGTGCAGCCTaGAGCACACTGCTCATGGCAACAGTCAGTGGGCAGCCGGCCCTT +
Preference number: 5 (lower is better)
Translates to: VEAGQAVRMLGTRAA*STLLMATVSGQPAL
Trigger: AAGGGCCGGCTGCCCACTGACTGTTGCCATGAGCAGTGTGCTGCAGGCTGCACGGGTCCCAAGCATTCTGACTGCCTGGCCTGCCTCCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp CAAACACATCGGAGCCAGCCCCTTCGGAGGGAGCCAGTGGAGATCTaGGGGGCTCTTCTTCCGAGGGCTCCAGGCCCAGTGTCAGCTCAC +
Preference number: 5 (lower is better)
Translates to: QTHRSQPLRREPVEI*GALLPRAPGPVSAH
Trigger: GTGAGCTGACACTGGGCCTGGAGCCCTCGGAAGAAGAGCCCCCCAGATCTCCACTGGCTCCCTCCGAAGGGGCTGGCTCCGATGTGTTTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp TCTCCTTTAGGATCCGCATCTGAGCCTGGTTGGGCACAGCTCCACTaGGCGTCAGCGGCTCCACCAGCTCGGTCTCCTGCAGCAGCCTAC +
Preference number: 5 (lower is better)
Translates to: SPLGSASEPGWAQLH*ASAAPPARSPAAAY
Trigger: GTAGGCTGCTGCAGGAGACCGAGCTGGTGGAGCCGCTGACGCCCAGTGGAGCTGTGCCCAACCAGGCTCAGATGCGGATCCTAAAGGAGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp CAAGATCTCTGTGAGACTTCGAAGCTGCAGCTCCCGCAGCCCTTCTaGGGTTCTGCCTGGGGCGGCGGTGGTGACGTTGTCCAAAGGGTC +
Preference number: 5 (lower is better)
Translates to: QDLCETSKLQLPQPF*GSAWGGGGDVVQRV
Trigger: GACCCTTTGGACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGGGCTGCGGGAGCTGCAGCTTCGAAGTCTCACAGAGATCTTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp ACCAAGCCCTCAAGACCACATGCCTCTTCTGGCCGGTTCCCACTGTaGAGTAGGGCCTGGTGCGGGTTCCGGAAGAGCTGGTCCCAAGGT +
Preference number: 5 (lower is better)
Translates to: TKPSRPHASSGRFPL*SRAWCGFRKSWSQG
Trigger: ACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCGGCCAGAAGAGGCATGTGGTCTTGAGGGCTTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp GCTTCCTTAGCTCTGTCTCCTTTAGGATCCGCATCTGAGCCTGGTTaGGCACAGCTCCACTGGGCGTCAGCGGCTCCACCAGCTCGGTCT +
Preference number: 5 (lower is better)
Translates to: ASLALSPLGSASEPG*AQLHWASAAPPARS
Trigger: AGACCGAGCTGGTGGAGCCGCTGACGCCCAGTGGAGCTGTGCCCAACCAGGCTCAGATGCGGATCCTAAAGGAGACAGAGCTAAGGAAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp CTCAGGGCACGTTCCTGGCATAGCCGGCTGCCCTGGATGTCATGTGGCCAGAGGGATTGTCTTTGCAGGTaGGGGCACAAGGTGGACAGG +
Preference number: 5 (lower is better)
Translates to: LRARSWHSRLPWMSCGQRDCLCR*GHKVDR
Trigger: CCTGTCCACCTTGTGCCCCAACCTGCAAAGACAATC...CCTCTGGCCACATGACATCCAGGGCAGCCGGCTATGCCAGGAACGTGCCCTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp CTGGGCAGCCTCGTTCGTCCAGGTCCACACATGAGTGGGTGCAGTTaGTGGGGCATGGCTGACATATGCCCTCCTCATCCGGGTACTTCC +
Preference number: 5 (lower is better)
Translates to: LGSLVRPGPHMSGCS*WGMADICPPHPGTS
Trigger: GGAAGTACCCGGATGAGGAGGGCATATGTCAGCCATGCCCCATCAACTGCACCCACTCATGTGTGGACCTGGACGAACGAGGCTGCCCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp AGCCCTGGTAGAGGTGGCGAAGCATGTCCAGGTGGGTCTCAGGACTaGCAGGGAGTCGCAACTTCATGTCGGTACCGGTACACACTTGGG +
Preference number: 5 (lower is better)
Translates to: SPGRGGEACPGGSQD*QGVATSCRYRYTLG
Trigger: CCCAAGTGTGTACCGGTACCGACATGAAGTTGCGACTCCCTGCCAGTCCTGAGACCCACCTGGACATGCTTCGCCACCTCTACCAGGGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp GGGCTGGAGGGGCCTAAGTCCTCGTTCTGGATGACCACAAAGCGCTaGGGGTCCCTTGCCATACGGGAGAATTCTGATACCAACTCCCGG +
Preference number: 5 (lower is better)
Translates to: GLEGPKSSFWMTTKR*GSLAIRENSDTNSR
Trigger: CCGGGAGTTGGTATCAGAATTCTCCCGTATGGCAAGGGACCCCCAGCGCTTTGTGGTCATCCAGAACGAGGACTTAGGCCCCTCCAGCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp AGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCACTCCAGCACAGGGCTaGCTGCATTTCTCACACCGC +
Preference number: 5 (lower is better)
Translates to: RPVWVQVLSPSWDARASVTPAQG*LHFSHR
Trigger: GCGGTGTGAGAAATGCAGCAAGCCCTGTGCTGGAGT...GACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 90 bp CCACATGCCTCTTCTGGCCGGTTCCCACTGTGGAGTAGGGCCTGGTaGGGGTTCCGGAAGAGCTGGTCCCAAGGTACAGTGTTTACAAAG +
Preference number: 5 (lower is better)
Translates to: PHASSGRFPLWSRAW*GFRKSWSQGTVFTK
Trigger: CTTTGTAAACACTGTACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCGGCCAGAAGAGGCATGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 90 bp ACGCCCACCACAGTTGCAATGATGAATGTCACTGGGCTGGCTCTCTaGTCTGCTGGGCAGCCTCGTTCGTCCAGGTCCACACATGAGTGG +
Preference number: 5 (lower is better)
Translates to: TPTTVAMMNVTGLAL*SAGQPRSSRSTHEW
Trigger: CCACTCATGTGTGGACCTGGACGAACGAGGCTGCCCAGCAGAGCAGAGAGCCAGCCCAGTGACATTCATCATTGCAACTGTGGTGGGCGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp GATCTCCTCCAGGGTTTCGAACACTTGGAGATGCTCTGGCTTCAGTaGGGCAACGCCGGAGGAGGGGTTCCCATCAAAGCTCTCCGGCAA +
Preference number: 5 (lower is better)
Translates to: DLLQGFEHLEMLWLQ*GNAGGGVPIKALRQ
Trigger: TTGCCGGAGAGCTTTGATGGGAACCCCTCCTCCGGCGTTGCCCCACTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCTGGAGGAGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp CGGTTCCCACTGTGGAGTAGGGCCTGGTGCGGGTTCCGGAAGAGCTaGTCCCAAGGTACAGTGTTTACAAAGCAGAGATGGGTGTTGCGG +
Preference number: 5 (lower is better)
Translates to: RFPLWSRAWCGFRKS*SQGTVFTKQRWVLR
Trigger: CCGCAACACCCATCTCTGCTTTGTAAACACTGTACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp AGACCACATGCCTCTTCTGGCCGGTTCCCACTGTGGAGTAGGGCCTaGTGCGGGTTCCGGAAGAGCTGGTCCCAAGGTACAGTGTTTACA +
Preference number: 5 (lower is better)
Translates to: RPHASSGRFPLWSRA*CGFRKSWSQGTVFT
Trigger: TGTAAACACTGTACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCGGCCAGAAGAGGCATGTGGTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp CAGGAACAACAGGACGCCCACCACAGTTGCAATGATGAATGTCACTaGGCTGGCTCTCTGCTCTGCTGGGCAGCCTCGTTCGTCCAGGTC +
Preference number: 5 (lower is better)
Translates to: QEQQDAHHSCNDECH*AGSLLCWAASFVQV
Trigger: GACCTGGACGAACGAGGCTGCCCAGCAGAGCAGAGAGCCAGCCCAGTGACATTCATCATTGCAACTGTGGTGGGCGTCCTGTTGTTCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp CTGCATTTCTCACACCGCTGTGTTCCGTCCTCAGCTGTGACCTCTTaGTTGTTCGGGGGACAGACCAGAGTGCAGGATCCCACTTCCGTG +
Preference number: 5 (lower is better)
Translates to: LHFSHRCVPSSAVTS*LFGGQTRVQDPTSV
Trigger: CACGGAAGTGGGATCCTGCACTCTGGTCTGTCCCCCGAACAACCAAGAGGTCACAGCTGAGGACGGAACACAGCGGTGTGAGAAATGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGGATGCACGTGCCTCAGTCCGTAATCTTGACGTGGTaGGGACTCTTGACTAGCACG +
Preference number: 5 (lower is better)
Translates to: DQSGCKCCPPLGMHVPQSVILTW*GLLTST
Trigger: CGTGCTAGTCAAGAGTCCCAACCACGTCAAGATTAC...GGACTGAGGCACGTGCATCCCAAGAGGGGGACAGCACTTGCACCCAGACTGGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp CTCACGATGCGCAACCTCTGCAGTGGGACGTGTTTCACTCGGTTGTaGGCGATGAGCATGTATCCCTGGACTTCCTGGATGTCCTGCAGG +
Preference number: 5 (lower is better)
Translates to: LTMRNLCSGTCFTRL*AMSMYPWTSWMSCR
Trigger: CCTGCAGGACATCCAGGAAGTCCAGGGATACATGCTCATCGCTCACAACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGCATCGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp CCCAAGGTACAGTGTTTACAAAGCAGAGATGGGTGTTGCGGTGAATaGGAGCCAATCCACTGCCCAGCTCCCGCAGTGAGCGTAGCCCCA +
Preference number: 5 (lower is better)
Translates to: PKVQCLQSRDGCCGE*EPIHCPAPAVSVAP
Trigger: TGGGGCTACGCTCACTGCGGGAGCTGGGCAGTGGATTGGCTCTCATTCACCGCAACACCCATCTCTGCTTTGTAAACACTGTACCTTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 90 bp CAGCCAGGGCATACTTGTCCTCAAAGAGCTGAGTCCCTCTCACGATaGGCAACCTCTGCAGTGGGACGTGTTTCACTCGGTTGTGAGCGA +
Preference number: 5 (lower is better)
Translates to: QPGHTCPQRAESLSR*ATSAVGRVSLGCER
Trigger: TCGCTCACAACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTCAGCTCTTTGAGGACAAGTATGCCCTGGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 90 bp GGCAACGCCGGAGGAGGGGTTCCCATCAAAGCTCTCCGGCAAAAATaGCAGGCTCCCAAAGATCTTCTTGCAGCCAGCAAACTCCTGGAT +
Preference number: 5 (lower is better)
Translates to: GNAGGGVPIKALRQK*QAPKDLLAASKLLD
Trigger: ATCCAGGAGTTTGCTGGCTGCAAGAAGATCTTTGGGAGCCTGGCATTTTTGCCGGAGAGCTTTGATGGGAACCCCTCCTCCGGCGTTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp TGTCTTTGCAGGTTGGGGCACAAGGTGGACAGGCCCGGGAACGATTaGTGTCCATGTCGACAGGAGCCAGCTGGTTATTCTTACGGAGGA +
Preference number: 5 (lower is better)
Translates to: CLCRLGHKVDRPGND*CPCRQEPAGYSYGG
Trigger: TCCTCCGTAAGAATAACCAGCTGGCTCCTGTCGACATGGACACCAATCGTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTGCAAAGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp GTAACCTGTGATCTCCTCCAGGGTTTCGAACACTTGGAGATGCTCTaGCTTCAGTGGGGCAACGCCGGAGGAGGGGTTCCCATCAAAGCT +
Preference number: 5 (lower is better)
Translates to: VTCDLLQGFEHLEML*LQWGNAGGGVPIKA
Trigger: AGCTTTGATGGGAACCCCTCCTCCGGCGTTGCCCCACTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCTGGAGGAGATCACAGGTTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GAGCCAGGCCAGGTAAGGAATACCCACTGGACCCTACAGTCTGTCAGGGCAGTCCTCCCAAAGATCTTCTaGCAGCCAGCAAACTCCTGG +
Preference number: 5 (lower is better)
Translates to: EPGQVRNTHWTLQSVRAVLPKIF*QPANSW
Trigger: CCAGGAGTTTGCTGGCTGCAAGAAGATCTTTGGGAG...GACTGCCCTGACAGACTGTAGGGTCCAGTGGGTATTCCTTACCTGGCCTGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp TCTCGGTTGTCTAGCACAGCCAGGGCATACTTGTCCTCAAAGAGCTaGGTCCCTCTCACGATGCGCAACCTCTGCAGTGGGACGTGTTTC +
Preference number: 5 (lower is better)
Translates to: SRLSSTARAYLSSKS*VPLTMRNLCSGTCF
Trigger: GAAACACGTCCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTCAGCTCTTTGAGGACAAGTATGCCCTGGCTGTGCTAGACAACCGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp TGGTCCCAAGGTACAGTGTTTACAAAGCAGAGATGGGTGTTGCGGTaGATGAGAGCCAATCCACTGCCCAGCTCCCGCAGTGAGCGTAGC +
Preference number: 5 (lower is better)
Translates to: WSQGTVFTKQRWVLR*MRANPLPSSRSERS
Trigger: GCTACGCTCACTGCGGGAGCTGGGCAGTGGATTGGCTCTCATTCACCGCAACACCCATCTCTGCTTTGTAAACACTGTACCTTGGGACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp GTCCTCAAAGAGCTGAGTCCCTCTCACGATGCGCAACCTCTGCAGTaGGACGTGTTTCACTCGGTTGTGAGCGATGAGCATGTATCCCTG +
Preference number: 5 (lower is better)
Translates to: VLKELSPSHDAQPLQ*DVFHSVVSDEHVSL
Trigger: CAGGGATACATGCTCATCGCTCACAACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTCAGCTCTTTGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 90 bp GGACAGGCCCGGGAACGATTGGTGTCCATGTCGACAGGAGCCAGCTaGTTATTCTTACGGAGGACATCCTTCCACAAAACCATGTCCTGG +
Preference number: 5 (lower is better)
Translates to: GQARERLVSMSTGAS*LFLRRTSFHKTMSW
Trigger: CCAGGACATGGTTTTGTGGAAGGATGTCCTCCGTAAGAATAACCAGCTGGCTCCTGTCGACATGGACACCAATCGTTCCCGGGCCTGTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCAAGGCTCTGCAGTCCTTaGGTTACCCCCACTGCCAGG +
Preference number: 5 (lower is better)
Translates to: GPGPLSDIGWGPVILQISRLCSP*VTPTAR
Trigger: CCTGGCAGTGGGGGTAACCAAAGGACTGCAGAGCCT...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp TGCGCAACCTCTGCAGTGGGACGTGTTTCACTCGGTTGTGAGCGATaGGCATGTATCCCTGGACTTCCTGGATGTCCTGCAGGAATGAGA +
Preference number: 5 (lower is better)
Translates to: CATSAVGRVSLGCER*ACIPGLPGCPAGMR
Trigger: TCTCATTCCTGCAGGACATCCAGGAAGTCCAGGGATACATGCTCATCGCTCACAACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 90 bp AGTGGGGGTCCCTTCAAAGGTACTTGGTGGAGGACCCTGCTCCGATaGGTTCTGGTCCCAGTAATAGAGGTTGTCAAAGGCTGGGCTGAA +
Preference number: 5 (lower is better)
Translates to: SGGPFKGTWWRTLLR*VLVPVIEVVKGWAE
Trigger: TTCAGCCCAGCCTTTGACAACCTCTATTACTGGGACCAGAACTCATCGGAGCAGGGTCCTCCACCAAGTACCTTTGAAGGGACCCCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GGCCCGGGACCACTCTCAGACATAGGCTGGGGTCCAGTTATTTTACAAATCTCACATGGCAGACAGTGCTaGCCCCTCACATACTCCCTG +
Preference number: 5 (lower is better)
Translates to: GPGPLSDIGWGPVILQISHGRQC*PLTYSL
Trigger: CAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCATG...TGAGATTTGTAAAATAACTGGACCCCAGCCTATGTCTGAGAGTGGTCCCGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 90 bp AATGACCACCACTATGATCAGGAACAACAGGACGCCCACCACAGTTaGAATGATGAATGTCACTGGGCTGGCTCTCTGCTCTGCTGGGCA +
Preference number: 5 (lower is better)
Translates to: NDHHYDQEQQDAHHS*NDECHWAGSLLCWA
Trigger: TGCCCAGCAGAGCAGAGAGCCAGCCCAGTGACATTCATCATTGCAACTGTGGTGGGCGTCCTGTTGTTCCTGATCATAGTGGTGGTCATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCAGGCAGTCAGAATGCTaGGGACCCGTGCAGCCTGCA +
Preference number: 5 (lower is better)
Translates to: VSNFWKISTHSLQEELCVRQSEC*GPVQPA
Trigger: TGCAGGCTGCACGGGTCCCAAGCATTCTGACTGCCT...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCCTCAGCTGTGACCTCTaGGTTGTTCGGGGGACAGAC +
Preference number: 5 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLLSCDL*VVRGTD
Trigger: GTCTGTCCCCCGAACAACCAAGAGGTCACAGCTGAG...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GAACAAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCCGTCGATGGTGCAGATaGGAGGCTGAGGTAGGCGTT +
Preference number: 5 (lower is better)
Translates to: EQNKLCTKTSLGASAVPLRRWCR*EAEVGV
Trigger: AACGCCTACCTCAGCCTCCAATCTGCACCATCGACG...GAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTTGTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp AAAATAAACTCTGTACAAAGACCAGTCTGGGTGCAAGTGCTGTCCCCCTCTTGGACGTGGTTGGGACTCTaGACTAGCACGTTTCGGGCA +
Preference number: 5 (lower is better)
Translates to: KINSVQRPVWVQVLSPSWTWLGL*TSTFRA
Trigger: TGCCCGAAACGTGCTAGTCAAGAGTCCCAACCACGT...CCAAGAGGGGGACAGCACTTGCACCCAGACTGGTCTTTGTACAGAGTTTATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCCACTTGATGGGCACCTaGCCCCCATCTGCATGGTAT +
Preference number: 5 (lower is better)
Translates to: VSNFWKISTHSLQEELCVHLMGT*PPSAWY
Trigger: ATACCATGCAGATGGGGGCAAGGTGCCCATCAAGTG...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTGCAAACTCCTGGATATaGTCACTGGTGATGGCCCTC +
Preference number: 5 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTANSWI*SLVMAL
Trigger: GAGGGCCATCACCAGTGACAATATCCAGGAGTTTGC...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp CTTTCTAAGGCAAGGAAAACAAGTCACATGGCAATGCTCTCCACAAGCTCCCCTCAGGGTTTCGAACACTaGGAGATGCTCTGGCTTCAG +
Preference number: 5 (lower is better)
Translates to: LSKARKTSHMAMLSTSSPQGFEH*EMLWLQ
Trigger: CTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCTG...AGGGGAGCTTGTGGAGAGCATTGCCATGTGACTTGTTTTCCTTGCCTTAGAAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GTCTCAAACTTTTGGAAGATCTCTACACACTCACTCCAGGAGGAGCTGTGTGTCCCGAAGTCGGTAATCTaGACGTGGTTGGGACTCTTG +
Preference number: 5 (lower is better)
Translates to: VSNFWKISTHSLQEELCVPKSVI*TWLGLL
Trigger: CAAGAGTCCCAACCACGTCAAGATTACCGACTTCGG...GACACACAGCTCCTCCTGGAGTGAGTGTGTAGAGATCTTCCAAAAGTTTGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS-3UTR CAA 90 bp GAAGGAATCCTAACTCCCCAGTCCCTCAAGCCCAAAGCCAAATTGTCTCAAACTCCAGGAGAGAGAGTCTaGGGTCTTTCTAGAGTAGCA +
Preference number: 5 (lower is better)
Translates to: EGILTPQSLKPKAKLSQTPGERV*GLSRVA
Trigger: TGCTACTCTAGAAAGACCCAAGACTCTCTCTCCTGG...AGTTTGAGACAATTTGGCTTTGGGCTTGAGGGACTGGGGAGTTAGGATTCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CCGCCACTCCTGGCCGACGAGCTGCGGTGTCTGCGGTaGGCTGTGCTCCCAGTACCTAGGGCAGGGTCTGGG +
Preference number: 6 (lower is better)
Translates to: PPLLADELRCLR*AVLPVPRAGSG
Trigger: CCCAGACCCTGCCCTAGGTACTGGGAGCACAGCCCACCGCAGACACCGCAGCTCGTCGGCCAGGAGTGGCGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CGGAGCCAGCCCCTTCGGAGGGAGCCAGTGGAGATCTaGGGGGCTCTTCTTCCGAGGGCTCCAGGCCCAGTG +
Preference number: 6 (lower is better)
Translates to: RSQPLRREPVEI*GALLPRAPGPV
Trigger: CACTGGGCCTGGAGCCCTCGGAAGAAGAGCCCCCCAGATCTCCACTGGCTCCCTCCGAAGGGGCTGGCTCCG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp TCCTGGCCGACGAGCTGCGGTGTCTGCGGTGGGCTGTaGTCCCAGTACCTAGGGCAGGGTCTGGGGAGAAGA +
Preference number: 6 (lower is better)
Translates to: SWPTSCGVCGGL*SQYLGQGLGRR
Trigger: TCTTCTCCCCAGACCCTGCCCTAGGTACTGGGAGCACAGCCCACCGCAGACACCGCAGCTCGTCGGCCAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp AAGCTGCAGCTCCCGCAGCCCTTCTGGGGTTCTGCCTaGGGCGGCGGTGGTGACGTTGTCCAAAGGGTCTCG +
Preference number: 6 (lower is better)
Translates to: KLQLPQPFWGSA*GGGGDVVQRVS
Trigger: CGAGACCCTTTGGACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGGGCTGCGGGAGCTGCAGCTT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp TGTGAGACTTCGAAGCTGCAGCTCCCGCAGCCCTTCTaGGGTTCTGCCTGGGGCGGCGGTGGTGACGTTGTC +
Preference number: 6 (lower is better)
Translates to: CETSKLQLPQPF*GSAWGGGGDVV
Trigger: GACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGGGCTGCGGGAGCTGCAGCTTCGAAGTCTCACA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp ACCCTCTGGGGTCAAGGGAGACTGAGGCCGAACCTCTaGCTGGTTCACATACTCGGGCTGGGGGCTGCAGGC +
Preference number: 6 (lower is better)
Translates to: TLWGQGRLRPNL*LVHILGLGAAG
Trigger: GCCTGCAGCCCCCAGCCCGAGTATGTGAACCAGCCAGAGGTTCGGCCTCAGTCTCCCTTGACCCCAGAGGGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp GCAGCCCTTCTGGGGTTCTGCCTGGGGCGGCGGTGGTaGCGTTGTCCAAAGGGTCTCGGTTGTCTAGCACAG +
Preference number: 6 (lower is better)
Translates to: AALLGFCLGRRW*RCPKGLGCLAQ
Trigger: CTGTGCTAGACAACCGAGACCCTTTGGACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGGGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp ATGGGAGGCGGAGGACCCTCTGGGGTCAAGGGAGACTaGGGCCGAACCTCTGGCTGGTTCACATACTCGGGC +
Preference number: 6 (lower is better)
Translates to: MGGGGPSGVKGD*GRTSGWFTYSG
Trigger: GCCCGAGTATGTGAACCAGCCAGAGGTTCGGCCTCAGTCTCCCTTGACCCCAGAGGGTCCTCCGCCTCCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GCCTCTTCTGGCCGGTTCCCACTGTGGAGTAGGGCCTaGTGCGGGTTCCGGAAGAGCTGGTCCCAAGGTACA +
Preference number: 6 (lower is better)
Translates to: ASSGRFPLWSRA*CGFRKSWSQGT
Trigger: TGTACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCGGCCAGAAGAGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CCTTCTGGGGTTCTGCCTGGGGCGGCGGTGGTGACGTaGTCCAAAGGGTCTCGGTTGTCTAGCACAGCCAGG +
Preference number: 6 (lower is better)
Translates to: PSGVLPGAAVVT*SKGSRLSSTAR
Trigger: CCTGGCTGTGCTAGACAACCGAGACCCTTTGGACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 90 bp TCCCGCAGCCCTTCTGGGGTTCTGCCTGGGGCGGCGGTGGTGACGTaGTCCAAAGGGTCTCGGTTGTCTAGCACAGCCAGGGCATACTTG +
Preference number: 6 (lower is better)
Translates to: SRSPSGVLPGAAVVT*SKGSRLSSTARAYL
Trigger: CAAGTATGCCCTGGCTGTGCTAGACAACCGAGACCCTTTGGACAACGTCACCACCGCCGCCCCAGGCAGAACCCCAGAAGGGCTGCGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp GGCCAGGCAGTCAGAATGCTTGGGACCCGTGCAGCCTaGAGCACACTGCTCATGGCAACAGTCAGTGGGCAG +
Preference number: 6 (lower is better)
Translates to: GQAVRMLGTRAA*STLLMATVSGQ
Trigger: CTGCCCACTGACTGTTGCCATGAGCAGTGTGCTGCAGGCTGCACGGGTCCCAAGCATTCTGACTGCCTGGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp TCTTCTGGCCGGTTCCCACTGTGGAGTAGGGCCTGGTaGGGGTTCCGGAAGAGCTGGTCCCAAGGTACAGTG +
Preference number: 6 (lower is better)
Translates to: SSGRFPLWSRAW*GFRKSWSQGTV
Trigger: CACTGTACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCGGCCAGAAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp TCAAGACCACATGCCTCTTCTGGCCGGTTCCCACTGTaGAGTAGGGCCTGGTGCGGGTTCCGGAAGAGCTGG +
Preference number: 6 (lower is better)
Translates to: SRPHASSGRFPL*SRAWCGFRKSW
Trigger: CCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAGTGGGAACCGGCCAGAAGAGGCATGTGGTCTTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GGCATGGCAGACAGTGCTTGCCCCTCACATACTCCCTaGGGAGCCCCTTCCATACTCGGCACTCCTCCACAC +
Preference number: 6 (lower is better)
Translates to: GMADSACPSHTP*GAPSILGTPPH
Trigger: GTGTGGAGGAGTGCCGAGTATGGAAGGGGCTCCCCAGGGAGTATGTGAGGGGCAAGCACTGTCTGCCATGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GCTCTGTCTCCTTTAGGATCCGCATCTGAGCCTGGTTaGGCACAGCTCCACTGGGCGTCAGCGGCTCCACCA +
Preference number: 6 (lower is better)
Translates to: ALSPLGSASEPG*AQLHWASAAPP
Trigger: TGGTGGAGCCGCTGACGCCCAGTGGAGCTGTGCCCAACCAGGCTCAGATGCGGATCCTAAAGGAGACAGAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CACTGCTCATGGCAACAGTCAGTGGGCAGCCGGCCCTaGCACCGGGCACAGCCACTAGTACAGATGGTGCCA +
Preference number: 6 (lower is better)
Translates to: HCSWQQSVGSRP*HRAQPLVQMVP
Trigger: TGGCACCATCTGTACTAGTGGCTGTGCCCGGTGCAAGGGCCGGCTGCCCACTGACTGTTGCCATGAGCAGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp CCTGTGATCTCCTCCAGGGTTTCGAACACTTGGAGATaGTCTGGCTTCAGTGGGGCAACGCCGGAGGAGGGG +
Preference number: 6 (lower is better)
Translates to: PVISSRVSNTWR*SGFSGATPEEG
Trigger: CCCCTCCTCCGGCGTTGCCCCACTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCTGGAGGAGATCACAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GATCTCCTCCAGGGTTTCGAACACTTGGAGATGCTCTaGCTTCAGTGGGGCAACGCCGGAGGAGGGGTTCCC +
Preference number: 6 (lower is better)
Translates to: DLLQGFEHLEML*LQWGNAGGGVP
Trigger: GGGAACCCCTCCTCCGGCGTTGCCCCACTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCTGGAGGAGATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp ACTCCTCCCTTCAAGATCTCTGTGAGACTTCGAAGCTaGAGCTCCCGCAGCCCTTCTGGGGTTCTGCCTGGG +
Preference number: 6 (lower is better)
Translates to: TPPFKISVRLRS*SSRSPSGVLPG
Trigger: CCCAGGCAGAACCCCAGAAGGGCTGCGGGAGCTGCAGCTTCGAAGTCTCACAGAGATCTTGAAGGGAGGAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp CCAGTACCTAGGGCAGGGTCTGGGGAGAAGAATCCCTaGTGGGGTACCAGGTACTCTTCAGCATCGACCAGC +
Preference number: 6 (lower is better)
Translates to: PVPRAGSGEKNP*WGTRYSSASTS
Trigger: GCTGGTCGATGCTGAAGAGTACCTGGTACCCCAGCAGGGATTCTTCTCCCCAGACCCTGCCCTAGGTACTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp TGGAGAGAGGCTCTGCAGTCCTTTGGTTACCCCCACTaGCAGGTCACCATCAAACACATCGGAGCCAGCCCC +
Preference number: 6 (lower is better)
Translates to: WREALQSFGYPH*QVTIKHIGASP
Trigger: GGGGCTGGCTCCGATGTGTTTGATGGTGACCTGGCAGTGGGGGTAACCAAAGGACTGCAGAGCCTCTCTCCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp TCACACCGCTGTGTTCCGTCCTCAGCTGTGACCTCTTaGTTGTTCGGGGGACAGACCAGAGTGCAGGATCCC +
Preference number: 6 (lower is better)
Translates to: SHRCVPSSAVTS*LFGGQTRVQDP
Trigger: GGGATCCTGCACTCTGGTCTGTCCCCCGAACAACCAAGAGGTCACAGCTGAGGACGGAACACAGCGGTGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CAGGACGCCCACCACAGTTGCAATGATGAATGTCACTaGGCTGGCTCTCTGCTCTGCTGGGCAGCCTCGTTC +
Preference number: 6 (lower is better)
Translates to: QDAHHSCNDECH*AGSLLCWAASF
Trigger: GAACGAGGCTGCCCAGCAGAGCAGAGAGCCAGCCCAGTGACATTCATCATTGCAACTGTGGTGGGCGTCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp GGGGCGGCGGTGGTGACGTTGTCCAAAGGGTCTCGGTaGTCTAGCACAGCCAGGGCATACTTGTCCTCAAAG +
Preference number: 6 (lower is better)
Translates to: GAAVVTLSKGSR*SSTARAYLSSK
Trigger: CTTTGAGGACAAGTATGCCCTGGCTGTGCTAGACAACCGAGACCCTTTGGACAACGTCACCACCGCCGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CAGGTTGGGGCACAAGGTGGACAGGCCCGGGAACGATaGGTGTCCATGTCGACAGGAGCCAGCTGGTTATTC +
Preference number: 6 (lower is better)
Translates to: QVGAQGGQARER*VSMSTGASWLF
Trigger: GAATAACCAGCTGGCTCCTGTCGACATGGACACCAATCGTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CTCACACCGCTGTGTTCCGTCCTCAGCTGTGACCTCTaGGTTGTTCGGGGGACAGACCAGAGTGCAGGATCC +
Preference number: 6 (lower is better)
Translates to: LTPLCSVLSCDL*VVRGTDQSAGS
Trigger: GGATCCTGCACTCTGGTCTGTCCCCCGAACAACCAAGAGGTCACAGCTGAGGACGGAACACAGCGGTGTGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CAGGGTTCTCTGCAGTGGGGGTCCCTTCAAAGGTACTaGGTGGAGGACCCTGCTCCGATGAGTTCTGGTCCC +
Preference number: 6 (lower is better)
Translates to: QGSLQWGSLQRY*VEDPAPMSSGP
Trigger: GGGACCAGAACTCATCGGAGCAGGGTCCTCCACCAAGTACCTTTGAAGGGACCCCCACTGCAGAGAACCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 90 bp CATTTCTCACACCGCTGTGTTCCGTCCTCAGCTGTGACCTCTTGGTaGTTCGGGGGACAGACCAGAGTGCAGGATCCCACTTCCGTGGAG +
Preference number: 6 (lower is better)
Translates to: HFSHRCVPSSAVTSW*FGGQTRVQDPTSVE
Trigger: CTCCACGGAAGTGGGATCCTGCACTCTGGTCTGTCCCCCGAACAACCAAGAGGTCACAGCTGAGGACGGAACACAGCGGTGTGAGAAATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 90 bp GCTGCATTTCTCACACCGCTGTGTTCCGTCCTCAGCTGTGACCTCTaGGTTGTTCGGGGGACAGACCAGAGTGCAGGATCCCACTTCCGT +
Preference number: 6 (lower is better)
Translates to: AAFLTPLCSVLSCDL*VVRGTDQSAGSHFR
Trigger: ACGGAAGTGGGATCCTGCACTCTGGTCTGTCCCCCGAACAACCAAGAGGTCACAGCTGAGGACGGAACACAGCGGTGTGAGAAATGCAGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp GGGCCGGGCAGTGCAGCTCACAGATACCACTATGATTaGAGTGGAGGCAGGCCAGGCAGTCAGAATGCTTGG +
Preference number: 6 (lower is better)
Translates to: GPGSAAHRYHYD*SGGRPGSQNAW
Trigger: CCAAGCATTCTGACTGCCTGGCCTGCCTCCACTTCAATCATAGTGGTATCTGTGAGCTGCACTGCCCGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp CTCGTTCGTCCAGGTCCACACATGAGTGGGTGCAGTTaGTGGGGCATGGCTGACATATGCCCTCCTCATCCG +
Preference number: 6 (lower is better)
Translates to: LVRPGPHMSGCS*WGMADICPPHP
Trigger: CGGATGAGGAGGGCATATGTCAGCCATGCCCCATCAACTGCACCCACTCATGTGTGGACCTGGACGAACGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp CTCTGCTGGGCAGCCTCGTTCGTCCAGGTCCACACATaGGTGGGTGCAGTTGATGGGGCATGGCTGACATAT +
Preference number: 6 (lower is better)
Translates to: LCWAASFVQVHT*VGAVDGAWLTY
Trigger: ATATGTCAGCCATGCCCCATCAACTGCACCCACTCATGTGTGGACCTGGACGAACGAGGCTGCCCAGCAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CAGGGTTTCGAACACTTGGAGATGCTCTGGCTTCAGTaGGGCAACGCCGGAGGAGGGGTTCCCATCAAAGCT +
Preference number: 6 (lower is better)
Translates to: QGFEHLEMLWLQ*GNAGGGVPIKA
Trigger: AGCTTTGATGGGAACCCCTCCTCCGGCGTTGCCCCACTGAAGCCAGAGCATCTCCAAGTGTTCGAAACCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp AGCAGCCGTGCCAGCCCGAAGTCGGTAATCTTGACGTaGTTGGGACTCTTGACTAGCACGTTTCGGGCAGCT +
Preference number: 6 (lower is better)
Translates to: SSRASPKSVILT*LGLLTSTFRAA
Trigger: AGCTGCCCGAAACGTGCTAGTCAAGAGTCCCAACCACGTCAAGATTACCGACTTCGGGCTGGCACGGCTGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GCACATCCAGGCCTAGGTACTCAGGGTTCTCTGCAGTaGGGGTCCCTTCAAAGGTACTTGGTGGAGGACCCT +
Preference number: 6 (lower is better)
Translates to: AHPGLGTQGSLQ*GSLQRYLVEDP
Trigger: AGGGTCCTCCACCAAGTACCTTTGAAGGGACCCCCACTGCAGAGAACCCTGAGTACCTAGGCCTGGATGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CAGGACTCTCACCCCAACAGTGATTGTCTTTGCAGGTaGGGGCACAAGGTGGACAGGCCCGGGAACGATTGG +
Preference number: 6 (lower is better)
Translates to: QDSHPNSDCLCR*GHKVDRPGNDW
Trigger: CCAATCGTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTGCAAAGACAATCACTGTTGGGGTGAGAGTCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 90 bp TTGTCTTTGCAGGTTGGGGCACAAGGTGGACAGGCCCGGGAACGATaGGTGTCCATGTCGACAGGAGCCAGCTGGTTATTCTTACGGAGG +
Preference number: 6 (lower is better)
Translates to: LSLQVGAQGGQARER*VSMSTGASWLFLRR
Trigger: CCTCCGTAAGAATAACCAGCTGGCTCCTGTCGACATGGACACCAATCGTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTGCAAAGACAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp TCTAGCACAGCCAGGGCATACTTGTCCTCAAAGAGCTaGGTCCCTCTCACGATGCGCAACCTCTGCAGTGGG +
Preference number: 6 (lower is better)
Translates to: SSTARAYLSSKS*VPLTMRNLCSG
Trigger: CCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTCAGCTCTTTGAGGACAAGTATGCCCTGGCTGTGCTAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp AGTCTTCAGGACTCTCACCCCAACAGTGATTGTCTTTaGAGGTTGGGGCACAAGGTGGACAGGCCCGGGAAC +
Preference number: 6 (lower is better)
Translates to: SLQDSHPNSDCL*RLGHKVDRPGN
Trigger: GTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTGCAAAGACAATCACTGTTGGGGTGAGAGTCCTGAAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp TGCCCAGACCATAGCATACTCCAGCACAGGGCTTGCTaGATTTCTCACACCGCTGTGTTCCGTCCTCAGCTG +
Preference number: 6 (lower is better)
Translates to: CPDHSILQHRAC*ISHTAVFRPQL
Trigger: CAGCTGAGGACGGAACACAGCGGTGTGAGAAATGCAGCAAGCCCTGTGCTGGAGTATGCTATGGTCTGGGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp CCATGCCCAGACCATAGCATACTCCAGCACAGGGCTTaGTGCATTTCTCACACCGCTGTGTTCCGTCCTCAG +
Preference number: 6 (lower is better)
Translates to: PCPDHSILQHRA*CISHTAVFRPQ
Trigger: CTGAGGACGGAACACAGCGGTGTGAGAAATGCAGCAAGCCCTGTGCTGGAGTATGCTATGGTCTGGGCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GAGCTGAGTCCCTCTCACGATGCGCAACCTCTGCAGTaGGACGTGTTTCACTCGGTTGTGAGCGATGAGCAT +
Preference number: 6 (lower is better)
Translates to: ELSPSHDAQPLQ*DVFHSVVSDEH
Trigger: ATGCTCATCGCTCACAACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTCAGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CCAACAGTGATTGTCTTTGCAGGTTGGGGCACAAGGTaGACAGGCCCGGGAACGATTGGTGTCCATGTCGAC +
Preference number: 6 (lower is better)
Translates to: PTVIVFAGWGTR*TGPGTIGVHVD
Trigger: GTCGACATGGACACCAATCGTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTGCAAAGACAATCACTGTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp AGGACTCTCACCCCAACAGTGATTGTCTTTGCAGGTTaGGGCACAAGGTGGACAGGCCCGGGAACGATTGGT +
Preference number: 6 (lower is better)
Translates to: RTLTPTVIVFAG*GTRWTGPGTIG
Trigger: ACCAATCGTTCCCGGGCCTGTCCACCTTGTGCCCCAACCTGCAAAGACAATCACTGTTGGGGTGAGAGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CTGTGGAGTAGGGCCTGGTGCGGGTTCCGGAAGAGCTaGTCCCAAGGTACAGTGTTTACAAAGCAGAGATGG +
Preference number: 6 (lower is better)
Translates to: LWSRAWCGFRKS*SQGTVFTKQRW
Trigger: CCATCTCTGCTTTGTAAACACTGTACCTTGGGACCAGCTCTTCCGGAACCCGCACCAGGCCCTACTCCACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp GGGCCTAAGTCCTCGTTCTGGATGACCACAAAGCGCTaGGGGTCCCTTGCCATACGGGAGAATTCTGATACC +
Preference number: 6 (lower is better)
Translates to: GPKSSFWMTTKR*GSLAIRENSDT
Trigger: GGTATCAGAATTCTCCCGTATGGCAAGGGACCCCCAGCGCTTTGTGGTCATCCAGAACGAGGACTTAGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp ATGTCCAGCAGCCGTGCCAGCCCGAAGTCGGTAATCTaGACGTGGTTGGGACTCTTGACTAGCACGTTTCGG +
Preference number: 6 (lower is better)
Translates to: MSSSRASPKSVI*TWLGLLTSTFR
Trigger: CCGAAACGTGCTAGTCAAGAGTCCCAACCACGTCAAGATTACCGACTTCGGGCTGGCACGGCTGCTGGACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp CGCAACCTCTGCAGTGGGACGTGTTTCACTCGGTTGTaGGCGATGAGCATGTATCCCTGGACTTCCTGGATG +
Preference number: 6 (lower is better)
Translates to: RNLCSGTCFTRL*AMSMYPWTSWM
Trigger: CATCCAGGAAGTCCAGGGATACATGCTCATCGCTCACAACCGAGTGAAACACGTCCCACTGCAGAGGTTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp CAGTGTTTACAAAGCAGAGATGGGTGTTGCGGTGAATaGGAGCCAATCCACTGCCCAGCTCCCGCAGTGAGC +
Preference number: 6 (lower is better)
Translates to: QCLQSRDGCCGE*EPIHCPAPAVS
Trigger: GCTCACTGCGGGAGCTGGGCAGTGGATTGGCTCTCATTCACCGCAACACCCATCTCTGCTTTGTAAACACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 90 bp CTAGGTACTCAGGGTTCTCTGCAGTGGGGGTCCCTTCAAAGGTACTaGGTGGAGGACCCTGCTCCGATGAGTTCTGGTCCCAGTAATAGA +
Preference number: 6 (lower is better)
Translates to: LGTQGSLQWGSLQRY*VEDPAPMSSGPSNR
Trigger: TCTATTACTGGGACCAGAACTCATCGGAGCAGGGTCCTCCACCAAGTACCTTTGAAGGGACCCCCACTGCAGAGAACCCTGAGTACCTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp TCTGCAGTGGGACGTGTTTCACTCGGTTGTGAGCGATaGGCATGTATCCCTGGACTTCCTGGATGTCCTGCA +
Preference number: 6 (lower is better)
Translates to: SAVGRVSLGCER*ACIPGLPGCPA
Trigger: TGCAGGACATCCAGGAAGTCCAGGGATACATGCTCATCGCTCACAACCGAGTGAAACACGTCCCACTGCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp GGTACAGTGTTTACAAAGCAGAGATGGGTGTTGCGGTaGATGAGAGCCAATCCACTGCCCAGCTCCCGCAGT +
Preference number: 6 (lower is better)
Translates to: GTVFTKQRWVLR*MRANPLPSSRS
Trigger: ACTGCGGGAGCTGGGCAGTGGATTGGCTCTCATTCACCGCAACACCCATCTCTGCTTTGTAAACACTGTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp TCCACACATGAGTGGGTGCAGTTGATGGGGCATGGCTaGCATATGCCCTCCTCATCCGGGTACTTCCAGATA +
Preference number: 6 (lower is better)
Translates to: STHEWVQLMGHG*HMPSSSGYFQI
Trigger: TATCTGGAAGTACCCGGATGAGGAGGGCATATGTCAGCCATGCCCCATCAACTGCACCCACTCATGTGTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp CATACTTGTCCTCAAAGAGCTGAGTCCCTCTCACGATaGGCAACCTCTGCAGTGGGACGTGTTTCACTCGGT +
Preference number: 6 (lower is better)
Translates to: HTCPQRAESLSR*ATSAVGRVSLG
Trigger: ACCGAGTGAAACACGTCCCACTGCAGAGGTTGCGCATCGTGAGAGGGACTCAGCTCTTTGAGGACAAGTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp GGAGGAGGGGTTCCCATCAAAGCTCTCCGGCAAAAATaGCAGGCTCCCAAAGATCTTCTTGCAGCCAGCAAA +
Preference number: 6 (lower is better)
Translates to: GGGVPIKALRQK*QAPKDLLAASK
Trigger: TTTGCTGGCTGCAAGAAGATCTTTGGGAGCCTGGCATTTTTGCCGGAGAGCTTTGATGGGAACCCCTCCTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS GCA 72 bp TGCATGGTATTCAGTCTCATCAATGTCCAGCAGCCGTaGCAGCCCGAAGTCGGTAATCTTGACGTGGTTGGG +
Preference number: 6 (lower is better)
Translates to: CMVFSLINVQQP*QPEVGNLDVVG
Trigger: CCCAACCACGTCAAGATTACCGACTTCGGGCTGGCACGGCTGCTGGACATTGATGAGACTGAATACCATGCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS TCA 72 bp CCCTTCAAAGGTACTTGGTGGAGGACCCTGCTCCGATaGGTTCTGGTCCCAGTAATAGAGGTTGTCAAAGGC +
Preference number: 6 (lower is better)
Translates to: PFKGTWWRTLLR*VLVPVIEVVKG
Trigger: GCCTTTGACAACCTCTATTACTGGGACCAGAACTCATCGGAGCAGGGTCCTCCACCAAGTACCTTTGAAGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CCA 72 bp CGGGAACGATTGGTGTCCATGTCGACAGGAGCCAGCTaGTTATTCTTACGGAGGACATCCTTCCACAAAACC +
Preference number: 6 (lower is better)
Translates to: RERLVSMSTGAS*LFLRRTSFHKT
Trigger: GGTTTTGTGGAAGGATGTCCTCCGTAAGAATAACCAGCTGGCTCCTGTCGACATGGACACCAATCGTTCCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 90 bp AGCAGCCTACGCATGGTATACTTCCGGATCTTCTGTCGCCTTCGTTaGATTAGGATTCCAATGACCACCACTATGATCAGGAACAACAGG +
Preference number: 6 (lower is better)
Translates to: SSLRMVYFRIFCRLR*IRIPMTTTMIRNNR
Trigger: CCTGTTGTTCCTGATCATAGTGGTGGTCATTGGAATCCTAATCAAACGAAGGCGACAGAAGATCCGGAAGTATACCATGCGTAGGCTGCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp CGCATGGTATACTTCCGGATCTTCTGTCGCCTTCGTTaGATTAGGATTCCAATGACCACCACTATGATCAGG +
Preference number: 6 (lower is better)
Translates to: RMVYFRIFCRLR*IRIPMTTTMIR
Trigger: CCTGATCATAGTGGTGGTCATTGGAATCCTAATCAAACGAAGGCGACAGAAGATCCGGAAGTATACCATGCG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6
CDS CAA 72 bp ACACCAGCCATGACGTACGCTTCATCTAGGATTTCTTaGTTAGCTTTAGGAGATGTGTTTTCCCTCAACACC +
Preference number: 6 (lower is better)
Translates to: TPAMTYASSRIS*LALGDVFSLNT
Trigger: GGTGTTGAGGGAAAACACATCTCCTAAAGCTAACAAAGAAATCCTAGATGAAGCGTACGTCATGGCTGGTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000058295.6