Pregenerated sensors for ERAS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031160Ensembl transcript IDs: ENSMUST00000033500.5
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGTGGTAACTTaGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTCACCTTGAC | + |
|
Preference number: 1 (lower is better) Translates to: RNFSPNDNKKMSVVT*SEREILLQENCHLD Trigger: GTCAAGGTGACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| 3UTR TCA 72 bp | GGAGAGGGAAATCTTATTACAAGAGAATTGTCACCTTaGCATGAGACAAGGGTCAATTTGCTAGACAAAGAT | + |
|
Preference number: 3 (lower is better) Translates to: GEGNLITRELSP*HETRVNLLDKD Trigger: ATCTTTGTCTAGCAAATTGACCCTTGTCTCATGTCAAGGTGACAATTCTCTTGTAATAAGATTTCCCTCTCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| 3UTR CCA 72 bp | TCACCAAATGACAATAAAAAGATGTCTGTGGTAACTTaGTCGGAGAGGGAAATCTTATTACAAGAGAATTGT | + |
|
Preference number: 3 (lower is better) Translates to: SPNDNKKMSVVT*SEREILLQENC Trigger: ACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGACATCTTTTTATTGTCATTTGGTGA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR TCA 90 bp | GAGGGATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGAGGGCTGCGGCAGCATaGGCATCTCCAGCAGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: EGCPMLPRNFSPNDNKKMRAAAA*ASPAVV Trigger: GACCACTGCTGGAGATGCTCATGCTGCCGCAGCCCT...CATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATCCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR TCA 90 bp | GAAATCTTATTACAAGAGAATTGTCACCTTGACATGAGACAAGGGTCAATTTGCGGGGCCCCCAACTTGTaGGCAAGGAGGGCTGCGGCA | + |
|
Preference number: 4 (lower is better) Translates to: EILLQENCHLDMRQGSICGAPNL*ARRAAA Trigger: TGCCGCAGCCCTCCTTGCTCACAAGTTGGGGGCCCC...GCAAATTGACCCTTGTCTCATGTCAAGGTGACAATTCTCTTGTAATAAGATTTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR TCA 90 bp | GTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTCACCTTGACGCCTCCTGGGCCCTCTaGATCTCATGGACAAGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: VVTWSEREILLQENCHLDASWAL*ISWTSR Trigger: CCTGCTTGTCCATGAGATTCAGAGGGCCCAGGAGGC...GTCAAGGTGACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR TCA 90 bp | GATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGAGAGGCTGCTTGTGGTaGGGGGTCCAGGTGGACCAT | + |
|
Preference number: 4 (lower is better) Translates to: DVPCYHVTSHQMTIKRCLRGCLW*GVQVDH Trigger: ATGGTCCACCTGGACCCCTCACCACAAGCAGCCTCT...CAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR GCA 90 bp | TCTGTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTCACCTTGCCTGCCAGCATCTTTaGACTGTGCCCAAGCCTCGT | + |
|
Preference number: 4 (lower is better) Translates to: SVVTWSEREILLQENCHLACQHL*TVPKPR Trigger: ACGAGGCTTGGGCACAGTGCAAAGATGCTGGCAGGC...AAGGTGACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR TCA 90 bp | GAGGGATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCACGCAGAGCCCGGTaGATATCCTGCCCAGATGTA | + |
|
Preference number: 4 (lower is better) Translates to: EGCPMLPRNFSPNDNKKMSRRAR*ISCPDV Trigger: TACATCTGGGCAGGATATTCACCGGGCTCTGCGTGA...CATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATCCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR GCA 90 bp | GAGGGATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGCACACCATCACCAGATaGCAAGCACTGGTCACGCAG | + |
|
Preference number: 4 (lower is better) Translates to: EGCPMLPRNFSPNDNKKMHTITR*QALVTQ Trigger: CTGCGTGACCAGTGCTTGGCATCTGGTGATGGTGTG...CATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATCCCTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CCA 90 bp | TCTGTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTCACCTTGGTGAGGGGTCCAGGTaGACCATATCTGCTGCAACT | + |
|
Preference number: 4 (lower is better) Translates to: SVVTWSEREILLQENCHLGEGSR*TISAAT Trigger: AGTTGCAGCAGATATGGTCCACCTGGACCCCTCACC...AAGGTGACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CCA 90 bp | GATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGCACCTTGCCGCGTCTTaGCTGAGGTCTTCACCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: DVPCYHVTSHQMTIKRCLHLAAS*LRSSPR Trigger: CCTTGGTGAAGACCTCAGCCAAGACGCGGCAAGGTG...CAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR GCA 90 bp | GTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTCACCTTGACTTTACCAACACCACTTaGACCCACCACCACTGCCTT | + |
|
Preference number: 4 (lower is better) Translates to: VVTWSEREILLQENCHLDFTNTT*THHHCL Trigger: AAGGCAGTGGTGGTGGGTGCAAGTGGTGTTGGTAAA...GTCAAGGTGACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CCA 90 bp | GATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGCATATCTGCTGCAACTaGTCCAGAGACGAGGGGTCG | + |
|
Preference number: 4 (lower is better) Translates to: DVPCYHVTSHQMTIKRCLHICCN*SRDEGS Trigger: CGACCCCTCGTCTCTGGACCAGTTGCAGCAGATATG...CAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR GCA 90 bp | AAGATGTCTGTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTGTGGACCATATCTGCTaGAACTGGTCCAGAGACGAG | + |
|
Preference number: 4 (lower is better) Translates to: KMSVVTWSEREILLQENCVDHIC*NWSRDE Trigger: CTCGTCTCTGGACCAGTTGCAGCAGATATGGTCCAC...ACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGACATCTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CCA 90 bp | GATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGGAGCATCTCCAGCAGTaGTCACCAGGTCACACTTGT | + |
|
Preference number: 4 (lower is better) Translates to: DVPCYHVTSHQMTIKRCLEHLQQ*SPGHTC Trigger: ACAAGTGTGACCTGGTGACCACTGCTGGAGATGCTC...CAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR GCA 90 bp | GATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGAGCATCTTTGCACTGTaGCCAAGCCTCGTGACTTTC | + |
|
Preference number: 4 (lower is better) Translates to: DVPCYHVTSHQMTIKRCLSIFAL*PSLVTF Trigger: GAAAGTCACGAGGCTTGGGCACAGTGCAAAGATGCT...CAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR GCA 90 bp | AATAAAAAGATGTCTGTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGTTGTACTCGGGTAGCTaGCTGCCAGCATCTTTGCAC | + |
|
Preference number: 4 (lower is better) Translates to: NKKMSVVTWSEREILLQELYSGS*LPASLH Trigger: GTGCAAAGATGCTGGCAGGCAGCTACCCGAGTACAA...CTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGACATCTTTTTATT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR TCA 90 bp | GATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGGAGTCATCTGGATGGTaGGAGCACTTTTACCAACAC | + |
|
Preference number: 4 (lower is better) Translates to: DVPCYHVTSHQMTIKRCLESSGW*EHFYQH Trigger: GTGTTGGTAAAAGTGCTCTCACCATCCAGATGACTC...CAGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS TCA 90 bp | TCGGGTAGCTGCCTGCCAGCATCTTTGCACTGTGCCCAAGCCTCGTaGCTTTCCTCTGGAGATCTGGTGCATGGGGTGCCGGAGCTCAGG | + |
|
Preference number: 5 (lower is better) Translates to: SGSCLPASLHCAQAS*LSSGDLVHGVPELR Trigger: CCTGAGCTCCGGCACCCCATGCACCAGATCTCCAGAGGAAAGTCACGAGGCTTGGGCACAGTGCAAAGATGCTGGCAGGCAGCTACCCGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 90 bp | CGAGGGGTCGTCAAGAGCAAAGACGCCCAGCACACCATCACCAGATaGCAAGCACTGGTCACGCAGAGCCCGGTGAATATCCTGCCCAGA | + |
|
Preference number: 5 (lower is better) Translates to: RGVVKSKDAQHTITR*QALVTQSPVNILPR Trigger: TCTGGGCAGGATATTCACCGGGCTCTGCGTGACCAGTGCTTGGCATCTGGTGATGGTGTGCTGGGCGTCTTTGCTCTTGACGACCCCTCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CCA 90 bp | CATGGACAAGCAGGGCAAAGGCTTCCTCCACACCTTGCCGCGTCTTaGCTGAGGTCTTCACCAAGGGGGCCCCCAACTTGTGAGCAAGGA | + |
|
Preference number: 5 (lower is better) Translates to: HGQAGQRLPPHLAAS*LRSSPRGPPTCEQG Trigger: TCCTTGCTCACAAGTTGGGGGCCCCCTTGGTGAAGACCTCAGCCAAGACGCGGCAAGGTGTGGAGGAAGCCTTTGCCCTGCTTGTCCATG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 90 bp | CACCACTTGCACCCACCACCACTGCCTTGTACTCGGGTAGCTGCCTaGCAGCATCTTTGCACTGTGCCCAAGCCTCGTGACTTTCCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: HHLHPPPLPCTRVAA*QHLCTVPKPRDFPL Trigger: CAGAGGAAAGTCACGAGGCTTGGGCACAGTGCAAAGATGCTGGCAGGCAGCTACCCGAGTACAAGGCAGTGGTGGTGGGTGCAAGTGGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS TCA 90 bp | GCAGCCACAGCTACACACGGCTTTCTGGTGTCGGGTCTTCTTGCTTaGTTCGGCCACAGCCTCCTGGGCCCTCTGAATCTCATGGACAAG | + |
|
Preference number: 5 (lower is better) Translates to: AATATHGFLVSGLLA*FGHSLLGPLNLMDK Trigger: CTTGTCCATGAGATTCAGAGGGCCCAGGAGGCTGTGGCCGAATCAAGCAAGAAGACCCGACACCAGAAAGCCGTGTGTAGCTGTGGCTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 90 bp | CAGAGCAGCCACAGCTACACACGGCTTTCTGGTGTCGGGTCTTCTTaGTTGATTCGGCCACAGCCTCCTGGGCCCTCTGAATCTCATGGA | + |
|
Preference number: 5 (lower is better) Translates to: QSSHSYTRLSGVGSS*LIRPQPPGPSESHG Trigger: TCCATGAGATTCAGAGGGCCCAGGAGGCTGTGGCCGAATCAAGCAAGAAGACCCGACACCAGAAAGCCGTGTGTAGCTGTGGCTGCTCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CCA 90 bp | TGTTGCCCACTAGTACCAGAGGCTGCTTGTGGTGAGGGGTCCAGGTaGACCATATCTGCTGCAACTGGTCCAGAGACGAGGGGTCGTCAA | + |
|
Preference number: 5 (lower is better) Translates to: CCPLVPEAACGEGSR*TISAATGPETRGRQ Trigger: TTGACGACCCCTCGTCTCTGGACCAGTTGCAGCAGATATGGTCCACCTGGACCCCTCACCACAAGCAGCCTCTGGTACTAGTGGGCAACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CAA 90 bp | AAGATGTCTGTGGTAACTTGGTCGGAGAGGGAAATCTTATTACAAGAGAATTGTCCCACCACCACTGCCTaGTACTCGGGTAGCTGCCTG | + |
|
Preference number: 5 (lower is better) Translates to: KMSVVTWSEREILLQENCPTTTA*YSGSCL Trigger: CAGGCAGCTACCCGAGTACAAGGCAGTGGTGGTGGG...ACAATTCTCTTGTAATAAGATTTCCCTCTCCGACCAAGTTACCACAGACATCTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CAA 90 bp | GGATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTACACCTTGCCGCGTCTaGGCTGAGGTCTTCACCAAG | + |
|
Preference number: 5 (lower is better) Translates to: GCPMLPRNFSPNDNKKMSTPCRV*AEVFTK Trigger: CTTGGTGAAGACCTCAGCCAAGACGCGGCAAGGTGT...AGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS-3UTR CAA 90 bp | GGATGTCCCATGTTACCACGTAACTTCTCACCAAATGACAATAAAAAGATGTCTGTCACCAGGTCACACTaGTTGCCCACTAGTACCAGA | + |
|
Preference number: 5 (lower is better) Translates to: GCPMLPRNFSPNDNKKMSVTRSH*LPTSTR Trigger: TCTGGTACTAGTGGGCAACAAGTGTGACCTGGTGAC...AGACATCTTTTTATTGTCATTTGGTGAGAAGTTACGTGGTAACATGGGACATCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CCA 72 bp | GCAGGGCAAAGGCTTCCTCCACACCTTGCCGCGTCTTaGCTGAGGTCTTCACCAAGGGGGCCCCCAACTTGT | + |
|
Preference number: 6 (lower is better) Translates to: AGQRLPPHLAAS*LRSSPRGPPTC Trigger: ACAAGTTGGGGGCCCCCTTGGTGAAGACCTCAGCCAAGACGCGGCAAGGTGTGGAGGAAGCCTTTGCCCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CAA 72 bp | AGCAGGGCAAAGGCTTCCTCCACACCTTGCCGCGTCTaGGCTGAGGTCTTCACCAAGGGGGCCCCCAACTTG | + |
|
Preference number: 6 (lower is better) Translates to: SRAKASSTPCRV*AEVFTKGAPNL Trigger: CAAGTTGGGGGCCCCCTTGGTGAAGACCTCAGCCAAGACGCGGCAAGGTGTGGAGGAAGCCTTTGCCCTGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 72 bp | CACCCACCACCACTGCCTTGTACTCGGGTAGCTGCCTaGCAGCATCTTTGCACTGTGCCCAAGCCTCGTGAC | + |
|
Preference number: 6 (lower is better) Translates to: HPPPLPCTRVAA*QHLCTVPKPRD Trigger: GTCACGAGGCTTGGGCACAGTGCAAAGATGCTGGCAGGCAGCTACCCGAGTACAAGGCAGTGGTGGTGGGTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 72 bp | CTTGCACCCACCACCACTGCCTTGTACTCGGGTAGCTaGCTGCCAGCATCTTTGCACTGTGCCCAAGCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: LAPTTTALYSGS*LPASLHCAQAS Trigger: CGAGGCTTGGGCACAGTGCAAAGATGCTGGCAGGCAGCTACCCGAGTACAAGGCAGTGGTGGTGGGTGCAAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 72 bp | TCATGGACAAGCAGGGCAAAGGCTTCCTCCACACCTTaGCGCGTCTTGGCTGAGGTCTTCACCAAGGGGGCC | + |
|
Preference number: 6 (lower is better) Translates to: SWTSRAKASSTP*RVLAEVFTKGA Trigger: GGCCCCCTTGGTGAAGACCTCAGCCAAGACGCGGCAAGGTGTGGAGGAAGCCTTTGCCCTGCTTGTCCATGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS TCA 72 bp | TGCCTGCCAGCATCTTTGCACTGTGCCCAAGCCTCGTaGCTTTCCTCTGGAGATCTGGTGCATGGGGTGCCG | + |
|
Preference number: 6 (lower is better) Translates to: CLPASLHCAQAS*LSSGDLVHGVP Trigger: CGGCACCCCATGCACCAGATCTCCAGAGGAAAGTCACGAGGCTTGGGCACAGTGCAAAGATGCTGGCAGGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS TCA 72 bp | GCTACACACGGCTTTCTGGTGTCGGGTCTTCTTGCTTaGTTCGGCCACAGCCTCCTGGGCCCTCTGAATCTC | + |
|
Preference number: 6 (lower is better) Translates to: ATHGFLVSGLLA*FGHSLLGPLNL Trigger: GAGATTCAGAGGGCCCAGGAGGCTGTGGCCGAATCAAGCAAGAAGACCCGACACCAGAAAGCCGTGTGTAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 72 bp | CACAGCTACACACGGCTTTCTGGTGTCGGGTCTTCTTaGTTGATTCGGCCACAGCCTCCTGGGCCCTCTGAA | + |
|
Preference number: 6 (lower is better) Translates to: HSYTRLSGVGSS*LIRPQPPGPSE Trigger: TTCAGAGGGCCCAGGAGGCTGTGGCCGAATCAAGCAAGAAGACCCGACACCAGAAAGCCGTGTGTAGCTGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS GCA 72 bp | GTCAAGAGCAAAGACGCCCAGCACACCATCACCAGATaGCAAGCACTGGTCACGCAGAGCCCGGTGAATATC | + |
|
Preference number: 6 (lower is better) Translates to: VKSKDAQHTITR*QALVTQSPVNI Trigger: GATATTCACCGGGCTCTGCGTGACCAGTGCTTGGCATCTGGTGATGGTGTGCTGGGCGTCTTTGCTCTTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CAA 72 bp | AGCTACACACGGCTTTCTGGTGTCGGGTCTTCTTGCTaGATTCGGCCACAGCCTCCTGGGCCCTCTGAATCT | + |
|
Preference number: 6 (lower is better) Translates to: SYTRLSGVGSSC*IRPQPPGPSES Trigger: AGATTCAGAGGGCCCAGGAGGCTGTGGCCGAATCAAGCAAGAAGACCCGACACCAGAAAGCCGTGTGTAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS TCA 72 bp | TCACCAGATGCCAAGCACTGGTCACGCAGAGCCCGGTaGATATCCTGCCCAGATGTATCCAGAACATTTAGA | + |
|
Preference number: 6 (lower is better) Translates to: SPDAKHWSRRAR*ISCPDVSRTFR Trigger: TCTAAATGTTCTGGATACATCTGGGCAGGATATTCACCGGGCTCTGCGTGACCAGTGCTTGGCATCTGGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CAA 72 bp | TCCGTTGTCCCTGGCCACTTCCTTCCAGTAGGAATCTaGGATAGTGGGGTCATGGTCTTTCACGAAGCATTG | + |
|
Preference number: 6 (lower is better) Translates to: SVVPGHFLPVGI*DSGVMVFHEAL Trigger: CAATGCTTCGTGAAAGACCATGACCCCACTATCCAAGATTCCTACTGGAAGGAAGTGGCCAGGGACAACGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS CAA 90 bp | AATGTAGCCTCCGTTGTCCCTGGCCACTTCCTTCCAGTAGGAATCTaGGATAGTGGGGTCATGGTCTTTCACGAAGCATTGGTGAGTCAT | + |
|
Preference number: 6 (lower is better) Translates to: NVASVVPGHFLPVGI*DSGVMVFHEALVSH Trigger: ATGACTCACCAATGCTTCGTGAAAGACCATGACCCCACTATCCAAGATTCCTACTGGAAGGAAGTGGCCAGGGACAACGGAGGCTACATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||
| CDS TCA 72 bp | GGTCTTTCACGAAGCATTGGTGAGTCATCTGGATGGTaGGAGCACTTTTACCAACACCACTTGCACCCACCA | + |
|
Preference number: 6 (lower is better) Translates to: GLSRSIGESSGW*EHFYQHHLHPP Trigger: TGGTGGGTGCAAGTGGTGTTGGTAAAAGTGCTCTCACCATCCAGATGACTCACCAATGCTTCGTGAAAGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033500.5 |
||