Pregenerated sensors for EQTN (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028575Ensembl transcript IDs: ENSMUST00000030309.6, ENSMUST00000107097.9
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CCTTCCTTGTTCAACAACAGCTGGGCATCAATCTCATTCATTGCCTaGATAGGGCCTCTCTCAACGATGAGCTCCTTACCCGGCTCCTCA | + |
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Preference number: 5 (lower is better) Translates to: PSLFNNSWASISFIA*IGPLSTMSSLPGSS Trigger: TGAGGAGCCGGGTAAGGAGCTCATCGTTGAGAGAGGCCCTATGCAGGCAATGAATGAGATTGATGCCCAGCTGTTGTTGAACAAGGAAGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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| CDS CCA 90 bp | CCTCAGGAGGGAGGAAGCTTGACTCGTCGGTTAAGACTGTTTGATTaGAGCCTTCTGTTGGATGGAAGTAAGATAGAGTTGCCAGCTCTG | + |
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Preference number: 5 (lower is better) Translates to: PQEGGSLTRRLRLFD*SLLLDGSKIELPAL Trigger: CAGAGCTGGCAACTCTATCTTACTTCCATCCAACAGAAGGCTCCAATCAAACAGTCTTAACCGACGAGTCAAGCTTCCTCCCTCCTGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107097.9 |
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| CDS CCA 90 bp | GACTCTCATAACTTTTGTCACGTAGGTGTCTCAGTTTGTACAGTGTaGCAAAGCAGAATATCAAGAGGGGGATTAGCAGAACCAGTGTCA | + |
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Preference number: 5 (lower is better) Translates to: DSHNFCHVGVSVCTV*QSRISRGGLAEPVS Trigger: TGACACTGGTTCTGCTAATCCCCCTCTTGATATTCTGCTTTGCCACACTGTACAAACTGAGACACCTACGTGACAAAAGTTATGAGAGTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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| CDS GCA 90 bp | TCCTTGATCGCCTCATCTCTGAAGAATTGTGGACCCAATAAGAGTTaGTGTCTGCACTTTTCGAAAAAGATGTATCTGACACACCTTCTG | + |
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Preference number: 5 (lower is better) Translates to: SLIASSLKNCGPNKS*CLHFSKKMYLTHLL Trigger: CAGAAGGTGTGTCAGATACATCTTTTTCGAAAAGTGCAGACAGCAACTCTTATTGGGTCCACAATTCTTCAGAGATGAGGCGATCAAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030309.6 |
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| CDS CAA 90 bp | GCTCCTCAGGAAGGAGGAATCTTGTCTCCTCAGGAGGGAGGAAGCTaGACTCGTCGGTTAAGACTGTTTGATTGGAGCCTTCTGTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: APQEGGILSPQEGGS*TRRLRLFDWSLLLD Trigger: ATCCAACAGAAGGCTCCAATCAAACAGTCTTAACCGACGAGTCAAGCTTCCTCCCTCCTGAGGAGACAAGATTCCTCCTTCCTGAGGAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107097.9 |
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| CDS CAA 72 bp | GAAGGAGGAATCTTGTCTCCTCAGGAGGGAGGAAGCTaGACTCGTCGGTTAAGACTGTTTGATTGGAGCCTG | + |
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Preference number: 6 (lower is better) Translates to: EGGILSPQEGGS*TRRLRLFDWSL Trigger: CAGGCTCCAATCAAACAGTCTTAACCGACGAGTCAAGCTTCCTCCCTCCTGAGGAGACAAGATTCCTCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030309.6 |
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| CDS CAA 90 bp | GCTCCTCAGGAAGGAGGAATCTTGTCTCCTCAGGAGGGAGGAAGCTaGACTCGTCGGTTAAGACTGTTTGATTGGAGCCTGCAGAAAAAT | + |
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Preference number: 6 (lower is better) Translates to: APQEGGILSPQEGGS*TRRLRLFDWSLQKN Trigger: ATTTTTCTGCAGGCTCCAATCAAACAGTCTTAACCGACGAGTCAAGCTTCCTCCCTCCTGAGGAGACAAGATTCCTCCTTCCTGAGGAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030309.6 |
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| CDS GCA 72 bp | TTCAACAACAGCTGGGCATCAATCTCATTCATTGCCTaGATAGGGCCTCTCTCAACGATGAGCTCCTTACCC | + |
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Preference number: 6 (lower is better) Translates to: FNNSWASISFIA*IGPLSTMSSLP Trigger: GGGTAAGGAGCTCATCGTTGAGAGAGGCCCTATGCAGGCAATGAATGAGATTGATGCCCAGCTGTTGTTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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| CDS CAA 72 bp | GAAGGAGGAATCTTGTCTCCTCAGGAGGGAGGAAGCTaGACTCGTCGGTTAAGACTGTTTGATTGGAGCCTT | + |
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Preference number: 6 (lower is better) Translates to: EGGILSPQEGGS*TRRLRLFDWSL Trigger: AAGGCTCCAATCAAACAGTCTTAACCGACGAGTCAAGCTTCCTCCCTCCTGAGGAGACAAGATTCCTCCTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107097.9 |
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| CDS CAA 90 bp | AGCAGAACCAGTGTCATCAGCGAGATCCCCAGCATTAACTTCAGCTaGATTTCCTCGAGCTCTGACAGTTTGTCTTCATTGGTAGCATTC | + |
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Preference number: 6 (lower is better) Translates to: SRTSVISEIPSINFS*ISSSSDSLSSLVAF Trigger: GAATGCTACCAATGAAGACAAACTGTCAGAGCTCGAGGAAATCAAGCTGAAGTTAATGCTGGGGATCTCGCTGATGACACTGGTTCTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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| CDS TCA 72 bp | GTGTCATCAGCGAGATCCCCAGCATTAACTTCAGCTTaGTTTCCTCGAGCTCTGACAGTTTGTCTTCATTGG | + |
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Preference number: 6 (lower is better) Translates to: VSSARSPALTSA*FPRALTVCLHW Trigger: CCAATGAAGACAAACTGTCAGAGCTCGAGGAAATCAAGCTGAAGTTAATGCTGGGGATCTCGCTGATGACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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| CDS CCA 72 bp | GGAGGAAGCTTGACTCGTCGGTTAAGACTGTTTGATTaGAGCCTTCTGTTGGATGGAAGTAAGATAGAGTTG | + |
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Preference number: 6 (lower is better) Translates to: GGSLTRRLRLFD*SLLLDGSKIEL Trigger: CAACTCTATCTTACTTCCATCCAACAGAAGGCTCCAATCAAACAGTCTTAACCGACGAGTCAAGCTTCCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000107097.9 |
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| CDS CAA 72 bp | AGTGTCATCAGCGAGATCCCCAGCATTAACTTCAGCTaGATTTCCTCGAGCTCTGACAGTTTGTCTTCATTG | + |
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Preference number: 6 (lower is better) Translates to: SVISEIPSINFS*ISSSSDSLSSL Trigger: CAATGAAGACAAACTGTCAGAGCTCGAGGAAATCAAGCTGAAGTTAATGCTGGGGATCTCGCTGATGACACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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| CDS GCA 72 bp | GCCTCATCTCTGAAGAATTGTGGACCCAATAAGAGTTaGTGTCTGCACTTTTCGAAAAAGATGTATCTGACA | + |
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Preference number: 6 (lower is better) Translates to: ASSLKNCGPNKS*CLHFSKKMYLT Trigger: TGTCAGATACATCTTTTTCGAAAAGTGCAGACAGCAACTCTTATTGGGTCCACAATTCTTCAGAGATGAGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030309.6 |
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| CDS CCA 72 bp | TGTGGCAGTCACAGATACTTCAGAACCTTTTATGTTTaGTGTGGTGAACACATATTGTTTTATGTCTTTATA | + |
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Preference number: 6 (lower is better) Translates to: CGSHRYFRTFYV*CGEHILFYVFI Trigger: TATAAAGACATAAAACAATATGTGTTCACCACACCAAACATAAAAGGTTCTGAAGTATCTGTGACTGCCACA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000030309.6 ENSMUST00000107097.9 |
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