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Pregenerated sensors for EPPIN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017733

Ensembl transcript IDs: ENSMUST00000103100.2

Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGGGGAGGTATCCTAGGACCCCACAACTGGGAAGACTCAAGGTCTTaGAGTGCTCAAAGTGCTCTCCAGAAGCCAGTCTGGAGCACACAG +
Preference number: 1 (lower is better)
Translates to: RGGILGPHNWEDSRS*SAQSALQKPVWSTQ
Trigger: CTGTGTGCTCCAGACTGGCTTCTGGAGAGCACTTTGAGCACTGCAAGACCTTGAGTCTTCCCAGTTGTGGGGTCCTAGGATACCTCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
3UTR CCA 90 bp AGCAACTGGCATGGTGGGAGGGGAGGTATCCTAGGACCCCACAACTaGGAAGACTCAAGGTCTTGCAGTGCTCAAAGTGCTCTCCAGAAG +
Preference number: 1 (lower is better)
Translates to: SNWHGGRGGILGPHN*EDSRSCSAQSALQK
Trigger: CTTCTGGAGAGCACTTTGAGCACTGCAAGACCTTGAGTCTTCCCAGTTGTGGGGTCCTAGGATACCTCCCCTCCCACCATGCCAGTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
3UTR-3UTR CAA 90 bp GAGGGGAGGTATCCTAGGACCCCACAACTGGGAAGACTCAAGGTCTTGCAGTGCGCAGGCACACAGAGCTaGGAGCAGAAGCCAAATTCT +
Preference number: 3 (lower is better)
Translates to: EGRYPRTPQLGRLKVLQCAGTQS*EQKPNS
Trigger: AGAATTTGGCTTCTGCTCCAAGCTCTGTGTGCCTGC...GCACTGCAAGACCTTGAGTCTTCCCAGTTGTGGGGTCCTAGGATACCTCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
3UTR CCA 72 bp CATGGTGGGAGGGGAGGTATCCTAGGACCCCACAACTaGGAAGACTCAAGGTCTTGCAGTGCTCAAAGTGCT +
Preference number: 3 (lower is better)
Translates to: HGGRGGILGPHN*EDSRSCSAQSA
Trigger: AGCACTTTGAGCACTGCAAGACCTTGAGTCTTCCCAGTTGTGGGGTCCTAGGATACCTCCCCTCCCACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR CCA 90 bp GGAGGTGTTATGGATAGCAACTGGCATGGTGGGAGGGGAGGTATCCTAGGACCCGGCAGTCCCTGTCCCTaGTACAAAGGTCCCTCTCTT +
Preference number: 4 (lower is better)
Translates to: GGVMDSNWHGGRGGILGPGSPCP*YKGPSL
Trigger: AAGAGAGGGACCTTTGTACCAGGGACAGGGACTGCC...GGGTCCTAGGATACCTCCCCTCCCACCATGCCAGTTGCTATCCATAACACCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR CCA 90 bp CAAAGTGCTCTCCAGAAGCCAGTCTGGAGCACACAGCAGGCACACAGAGCTTGGATCTGGGGCATCTCCTaGGAAACAGCAAGTCAGCTA +
Preference number: 4 (lower is better)
Translates to: QSALQKPVWSTQQAHRAWIWGIS*ETASQL
Trigger: TAGCTGACTTGCTGTTTCCCAGGAGATGCCCCAGAT...CCAAGCTCTGTGTGCCTGCTGTGTGCTCCAGACTGGCTTCTGGAGAGCACTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
3UTR CAA 72 bp TATCCTAGGACCCCACAACTGGGAAGACTCAAGGTCTaGCAGTGCTCAAAGTGCTCTCCAGAAGCCAGTCTG +
Preference number: 4 (lower is better)
Translates to: YPRTPQLGRLKV*QCSKCSPEASL
Trigger: CAGACTGGCTTCTGGAGAGCACTTTGAGCACTGCAAGACCTTGAGTCTTCCCAGTTGTGGGGTCCTAGGATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR TCA 90 bp GCAGGCACACAGAGCTTGGAGCAGAAGCCAAATTCTGATGATTTTCCCAGCGTAGTTCACACTCCTCTCTaGATCTGGGGCATCTCCTGG +
Preference number: 4 (lower is better)
Translates to: AGTQSLEQKPNSDDFPSVVHTPL*IWGISW
Trigger: CCAGGAGATGCCCCAGATTCAGAGAGGAGTGTGAAC...TACGCTGGGAAAATCATCAGAATTTGGCTTCTGCTCCAAGCTCTGTGTGCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR GCA 90 bp GTGCTCAAAGTGCTCTCCAGAAGCCAGTCTGGAGCACACAGCAGGCACACAGAGCAAATAGCACAAGAATaGTCACAAATCCAGAAAGCT +
Preference number: 4 (lower is better)
Translates to: VLKVLSRSQSGAHSRHTEQIAQE*SQIQKA
Trigger: AGCTTTCTGGATTTGTGAGCATTCTTGTGCTATTTG...CTCTGTGTGCCTGCTGTGTGCTCCAGACTGGCTTCTGGAGAGCACTTTGAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR TCA 90 bp GACTCAAGGTCTTGCAGTGCTCAAAGTGCTCTCCAGAAGCCAGTCTGGAGCACAATTTCTTTCCACAGTTaGAGACACAGCACTTCTCTT +
Preference number: 4 (lower is better)
Translates to: DSRSCSAQSALQKPVWSTISFHS*RHSTSL
Trigger: AAGAGAAGTGCTGTGTCTTCAACTGTGGAAAGAAAT...TGTGCTCCAGACTGGCTTCTGGAGAGCACTTTGAGCACTGCAAGACCTTGAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR CCA 90 bp ATGGATAGCAACTGGCATGGTGGGAGGGGAGGTATCCTAGGACCCCACAACTGGTTCTGGCATATACTTTaGGATTGGAAGTTGTTATTG +
Preference number: 4 (lower is better)
Translates to: MDSNWHGGRGGILGPHNWFWHIL*DWKLLL
Trigger: CAATAACAACTTCCAATCCCAAAGTATATGCCAGAA...CCAGTTGTGGGGTCCTAGGATACCTCCCCTCCCACCATGCCAGTTGCTATCCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS-3UTR CAA 90 bp GGAGGTGTTATGGATAGCAACTGGCATGGTGGGAGGGGAGGTATCCTAGGACCCCTTTGGGATTGGAAGTaGTTATTGTTTCCTTGGCAG +
Preference number: 5 (lower is better)
Translates to: GGVMDSNWHGGRGGILGPLWDWK*LLFPWQ
Trigger: CTGCCAAGGAAACAATAACAACTTCCAATCCCAAAG...GGGTCCTAGGATACCTCCCCTCCCACCATGCCAGTTGCTATCCATAACACCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS CCA 72 bp GGGCAGTCCCTGTCCCTGGTACAAAGGTCCCTCTCTTaGTGTTCACACTCCTCTCTGAATCTGGGGCATCTC +
Preference number: 6 (lower is better)
Translates to: GQSLSLVQRSLS*CSHSSLNLGHL
Trigger: GAGATGCCCCAGATTCAGAGAGGAGTGTGAACACCAAGAGAGGGACCTTTGTACCAGGGACAGGGACTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS CAA 72 bp CGGGCAGTCCCTGTCCCTGGTACAAAGGTCCCTCTCTaGGTGTTCACACTCCTCTCTGAATCTGGGGCATCT +
Preference number: 6 (lower is better)
Translates to: RAVPVPGTKVPL*VFTLLSESGAS
Trigger: AGATGCCCCAGATTCAGAGAGGAGTGTGAACACCAAGAGAGGGACCTTTGTACCAGGGACAGGGACTGCCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2
CDS GCA 72 bp AGTAAGCCATACAGTAGCCGGAGTCTTTCGGCAGGCTaGAGATATCTTGTTGGGGGTTTAAGCATTTCTTTC +
Preference number: 6 (lower is better)
Translates to: SKPYSSRSLSAG*RYLVGGLSISF
Trigger: GAAAGAAATGCTTAAACCCCCAACAAGATATCTGCAGCCTGCCGAAAGACTCCGGCTACTGTATGGCTTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000103100.2