Pregenerated sensors for EPO (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029711Ensembl transcript IDs: ENSMUST00000031723.14, ENSMUST00000111038.8, ENSMUST00000111039.3
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGGGTCTCTGGTGGCTGGGAGGAATTGGCTAGCAGGGCCTGGGCCTaGAGGATGGCTTCTGAGAGCAGGGACAGGCCTTGCCAAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: RVSGGWEELASRAWA*RMASESRDRPCQTS Trigger: AGAAGTTTGGCAAGGCCTGTCCCTGCTCTCAGAAGCCATCCTGCAGGCCCAGGCCCTGCTAGCCAATTCCTCCCAGCCACCAGAGACCCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CCA 90 bp | CTGGTGGCTGGGAGGAATTGGCTAGCAGGGCCTGGGCCTGCAGGATaGCTTCTGAGAGCAGGGACAGGCCTTGCCAAACTTCTATGGCCT | + |
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Preference number: 5 (lower is better) Translates to: LVAGRNWLAGPGPAG*LLRAGTGLAKLLWP Trigger: AGGCCATAGAAGTTTGGCAAGGCCTGTCCCTGCTCTCAGAAGCCATCCTGCAGGCCCAGGCCCTGCTAGCCAATTCCTCCCAGCCACCAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS TCA 90 bp | CCTTGGCCTCTAAGATGTACCTCTCCAGAACTCGACTGTCGCAGATaGGGCGTGGGGGAGCACAGAGGACTGGGAGGCCCAGAGGAATCA | + |
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Preference number: 5 (lower is better) Translates to: PWPLRCTSPELDCRR*GVGEHRGLGGPEES Trigger: TGATTCCTCTGGGCCTCCCAGTCCTCTGTGCTCCCCCACGCCTCATCTGCGACAGTCGAGTTCTGGAGAGGTACATCTTAGAGGCCAAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS TCA 90 bp | CGGAGTGGAGCAGGTGGGGTGGTATCTGGAGGCGACATCAATTCCTaGGCTCCCAGTACCCGAAGCAGTGAAGTGAGGCTACGTAGACCA | + |
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Preference number: 5 (lower is better) Translates to: RSGAGGVVSGGDINS*APSTRSSEVRLRRP Trigger: TGGTCTACGTAGCCTCACTTCACTGCTTCGGGTACTGGGAGCTCAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111039.3 |
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| CDS TCA 90 bp | GGAAGTTGGCGTAGACCCGGAAGAGCTTGCAGAAAGTATCCACTGTaGGTGTTCGGAGTGGAGCAGGTGGGGTGGTATCTGGAGGCGACA | + |
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Preference number: 5 (lower is better) Translates to: GSWRRPGRACRKYPL*VFGVEQVGWYLEAT Trigger: TGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTTTCTGCAAGCTCTTCCGGGTCTACGCCAACTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CCA 90 bp | GAGCTTGCAGAAAGTATCCACTGTGAGTGTTCGGAGTGGAGCAGGTaGGGTGGTATCTGGAGGCGACATCAATTCCTTCTGAGCTCCCAG | + |
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Preference number: 5 (lower is better) Translates to: ELAESIHCECSEWSR*GGIWRRHQFLLSSQ Trigger: CTGGGAGCTCAGAAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTTTCTGCAAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 |
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| CDS CCA 90 bp | GAGCTTGCAGAAAGTATCCACTGTGAGTGTTCGGAGTGGAGCAGGTaGGGTGGTATCTGGAGGCGACATCAATTCCTGAGCTCCCAGTAC | + |
|
Preference number: 5 (lower is better) Translates to: ELAESIHCECSEWSR*GGIWRRHQFLSSQY Trigger: GTACTGGGAGCTCAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTTTCTGCAAGCTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111039.3 |
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| CDS CCA 90 bp | TTCCACCTCCATTCTTTTCCAAGCATAGAAGTTGACTTTGGTATCTaGGACTGTAATATTTTCACTCAGTCTGGGACCTTCTGCACAACC | + |
|
Preference number: 5 (lower is better) Translates to: FHLHSFPSIEVDFGI*DCNIFTQSGTFCTT Trigger: GGTTGTGCAGAAGGTCCCAGACTGAGTGAAAATATTACAGTCCCAGATACCAAAGTCAACTTCTATGCTTGGAAAAGAATGGAGGTGGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CCA 72 bp | GTCTCTGGTGGCTGGGAGGAATTGGCTAGCAGGGCCTaGGCCTGCAGGATGGCTTCTGAGAGCAGGGACAGG | + |
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Preference number: 6 (lower is better) Translates to: VSGGWEELASRA*ACRMASESRDR Trigger: CCTGTCCCTGCTCTCAGAAGCCATCCTGCAGGCCCAGGCCCTGCTAGCCAATTCCTCCCAGCCACCAGAGAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CCA 72 bp | TGTGAGTGTTCGGAGTGGAGCAGGTGGGGTGGTATCTaGAGGCGACATCAATTCCTGAGCTCCCAGTACCCG | + |
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Preference number: 6 (lower is better) Translates to: CECSEWSRWGGI*RRHQFLSSQYP Trigger: CGGGTACTGGGAGCTCAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111039.3 |
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| CDS TCA 72 bp | GCAGGTGGGGTGGTATCTGGAGGCGACATCAATTCCTaGGCTCCCAGTACCCGAAGCAGTGAAGTGAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: AGGVVSGGDINS*APSTRSSEVRL Trigger: TAGCCTCACTTCACTGCTTCGGGTACTGGGAGCTCAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111039.3 |
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| CDS TCA 72 bp | GGTGGGGTGGTATCTGGAGGCGACATCAATTCCTTCTaGGCTCCCAGTACCCGAAGCAGTGAAGTGAGGCTA | + |
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Preference number: 6 (lower is better) Translates to: GGVVSGGDINSF*APSTRSSEVRL Trigger: TAGCCTCACTTCACTGCTTCGGGTACTGGGAGCTCAGAAGGAATTGATGTCGCCTCCAGATACCACCCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 |
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| CDS TCA 72 bp | CGTAGACCCGGAAGAGCTTGCAGAAAGTATCCACTGTaGGTGTTCGGAGTGGAGCAGGTGGGGTGGTATCTG | + |
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Preference number: 6 (lower is better) Translates to: RRPGRACRKYPL*VFGVEQVGWYL Trigger: CAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTTTCTGCAAGCTCTTCCGGGTCTACG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CCA 72 bp | TGTGAGTGTTCGGAGTGGAGCAGGTGGGGTGGTATCTaGAGGCGACATCAATTCCTTCTGAGCTCCCAGTAC | + |
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Preference number: 6 (lower is better) Translates to: CECSEWSRWGGI*RRHQFLLSSQY Trigger: GTACTGGGAGCTCAGAAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 |
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| CDS CCA 72 bp | CTCCCGTGTACAGCTTCAGTTTCCCCCGGAGGAAGTTaGCGTAGACCCGGAAGAGCTTGCAGAAAGTATCCA | + |
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Preference number: 6 (lower is better) Translates to: LPCTASVSPGGS*RRPGRACRKYP Trigger: TGGATACTTTCTGCAAGCTCTTCCGGGTCTACGCCAACTTCCTCCGGGGGAAACTGAAGCTGTACACGGGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CCA 72 bp | GAAAGTATCCACTGTGAGTGTTCGGAGTGGAGCAGGTaGGGTGGTATCTGGAGGCGACATCAATTCCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: ESIHCECSEWSR*GGIWRRHQFLS Trigger: GCTCAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111039.3 |
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| CDS CCA 72 bp | GAAAGTATCCACTGTGAGTGTTCGGAGTGGAGCAGGTaGGGTGGTATCTGGAGGCGACATCAATTCCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: ESIHCECSEWSR*GGIWRRHQFLL Trigger: CAGAAGGAATTGATGTCGCCTCCAGATACCACCCCACCTGCTCCACTCCGAACACTCACAGTGGATACTTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 |
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| CDS CAA 90 bp | AGTCTGGGACCTTCTGCACAACCCATCGTGACATTTTCTGCCTCCTaGGCCTCTAAGATGTACCTCTCCAGAACTCGACTGTCGCAGATG | + |
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Preference number: 6 (lower is better) Translates to: SLGPSAQPIVTFSAS*ASKMYLSRTRLSQM Trigger: CATCTGCGACAGTCGAGTTCTGGAGAGGTACATCTTAGAGGCCAAGGAGGCAGAAAATGTCACGATGGGTTGTGCAGAAGGTCCCAGACT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS CAA 72 bp | CCTTCTGCACAACCCATCGTGACATTTTCTGCCTCCTaGGCCTCTAAGATGTACCTCTCCAGAACTCGACTG | + |
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Preference number: 6 (lower is better) Translates to: PSAQPIVTFSAS*ASKMYLSRTRL Trigger: CAGTCGAGTTCTGGAGAGGTACATCTTAGAGGCCAAGGAGGCAGAAAATGTCACGATGGGTTGTGCAGAAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS TCA 72 bp | TTTCACTCAGTCTGGGACCTTCTGCACAACCCATCGTaGCATTTTCTGCCTCCTTGGCCTCTAAGATGTACC | + |
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Preference number: 6 (lower is better) Translates to: FHSVWDLLHNPS*HFLPPWPLRCT Trigger: GGTACATCTTAGAGGCCAAGGAGGCAGAAAATGTCACGATGGGTTGTGCAGAAGGTCCCAGACTGAGTGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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| CDS GCA 72 bp | TGGGACTGTAATATTTTCACTCAGTCTGGGACCTTCTaGACAACCCATCGTGACATTTTCTGCCTCCTTGGC | + |
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Preference number: 6 (lower is better) Translates to: WDCNIFTQSGTF*TTHRDIFCLLG Trigger: GCCAAGGAGGCAGAAAATGTCACGATGGGTTGTGCAGAAGGTCCCAGACTGAGTGAAAATATTACAGTCCCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000031723.14 ENSMUST00000111038.8 ENSMUST00000111039.3 |
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