RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for EPN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000035203

Ensembl transcript IDs: ENSMUST00000045277.7, ENSMUST00000098845.10, ENSMUST00000208634.2

Found 226 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR TCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGAAGAGGGTGTAGTGTaGGTGGGCCCCAGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSEEGVV*VGPRRG
Trigger: CCCCCTCCTGGGGCCCACTCACACTACACCCTCTTC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR TCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGAAGAGGGTGTAGTGTaGGTGGGCCCCAGGAGGGGG +
Preference number: 2 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLEEGVV*VGPRRG
Trigger: CCCCCTCCTGGGGCCCACTCACACTACACCCTCTTC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR TCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAATTGGGGAAGCCAGCTaGACCAGGCCTCCCTCCTAC +
Preference number: 2 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSIGEAS*TRPPSY
Trigger: GTAGGAGGGAGGCCTGGTTCAGCTGGCTTCCCCAAT...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR TCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGATTGGGGAAGCCAGCTaGACCAGGCCTCCCTCCTAC +
Preference number: 2 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLIGEAS*TRPPSY
Trigger: GTAGGAGGGAGGCCTGGTTCAGCTGGCTTCCCCAAT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR TCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGATTGGGGAAGCCAGCTaGACCAGGCCTCCCTCCTAC +
Preference number: 2 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRIGEAS*TRPPSY
Trigger: GTAGGAGGGAGGCCTGGTTCAGCTGGCTTCCCCAAT...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACCAGGGAGCAGAAATTaGGGAAGCCAGCTGAACCAG +
Preference number: 2 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSPGSRN*GSQLNQ
Trigger: CTGGTTCAGCTGGCTTCCCCAATTTCTGCTCCCTGG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGTTTCTCAAGGGGAGGTaGGGTGGGGACTTGGGAAGA +
Preference number: 2 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLFLKGR*GGDLGR
Trigger: TCTTCCCAAGTCCCCACCCCACCTCCCCTTGAGAAA...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCCAGGGAGCAGAAATTaGGGAAGCCAGCTGAACCAG +
Preference number: 2 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRPGSRN*GSQLNQ
Trigger: CTGGTTCAGCTGGCTTCCCCAATTTCTGCTCCCTGG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTTTCTCAAGGGGAGGTaGGGTGGGGACTTGGGAAGA +
Preference number: 2 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRFLKGR*GGDLGR
Trigger: TCTTCCCAAGTCCCCACCCCACCTCCCCTTGAGAAA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGTTTCTCAAGGGGAGGTaGGGTGGGGACTTGGGAAGA +
Preference number: 2 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLFLKGR*GGDLGR
Trigger: TCTTCCCAAGTCCCCACCCCACCTCCCCTTGAGAAA...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR TCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATATGCACTCACAATACTaGTCTCCCAGGGAGCAGAAA +
Preference number: 2 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDMHSQY*SPREQK
Trigger: TTTCTGCTCCCTGGGAGATCAGTATTGTGAGTGCAT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR TCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTATGCACTCACAATACTaGTCTCCCAGGGAGCAGAAA +
Preference number: 2 (lower is better)
Translates to: IITKDSPGVPRERGGSNTMHSQY*SPREQK
Trigger: TTTCTGCTCCCTGGGAGATCAGTATTGTGAGTGCAT...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CAA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACCCAGGGAGCAGAAATaGGGGAAGCCAGCTGAACCA +
Preference number: 3 (lower is better)
Translates to: AKIITKDSPGVPRERGGSPREQK*GKPAEP
Trigger: TGGTTCAGCTGGCTTCCCCAATTTCTGCTCCCTGGG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CAA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCCCAGGGAGCAGAAATaGGGGAAGCCAGCTGAACCA +
Preference number: 3 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRPREQK*GKPAEP
Trigger: TGGTTCAGCTGGCTTCCCCAATTTCTGCTCCCTGGG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR TCA 72 bp ACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTaGTTTGGGGGTTGTCATGAGTTTAGAGGGAGGTGG +
Preference number: 3 (lower is better)
Translates to: TRGAKGTRRLKH*FGGCHEFRGRW
Trigger: CCACCTCCCTCTAAACTCATGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR-3UTR CAA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACCCAGGGAGCAGAAATaGGGGAAGCCAGCTGAACCA +
Preference number: 3 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKPREQK*GKPAEP
Trigger: TGGTTCAGCTGGCTTCCCCAATTTCTGCTCCCTGGG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR GCA 72 bp AAGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTaGCAAGGGAACGAGGAGGCTCAAACACTGATTTGG +
Preference number: 3 (lower is better)
Translates to: KLPKSSPRIHQG*QGNEEAQTLIW
Trigger: CCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACTCCGCCTCGGGAGGTaGTCCAGAGCCCACGGCTGC +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSLRLGR*SRAHGC
Trigger: GCAGCCGTGGGCTCTGGACCACCTCCCGAGGCGGAG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACCTCCAGGGATCCCCTaGGGCTGGTGTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSPPGIP*GWCGGC
Trigger: GCAGCCCCCACACCAGCCTCAGGGGATCCCTGGAGG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGGGCCCTGTAGGGGCTaGAGGCCTCCAGGGATCCCC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLGPCRG*RPPGIP
Trigger: GGGGATCCCTGGAGGCCTGCAGCCCCTACAGGGCCC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGGGCCCCTCTCCAGCTaGAGGAGCTGGGGTCCCACC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSGPLSS*RSWGPT
Trigger: GGTGGGACCCCAGCTCCTGCAGCTGGAGAGGGGCCC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCTCCGCCTCGGGAGGTaGTCCAGAGCCCACGGCTGC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLLRLGR*SRAHGC
Trigger: GCAGCCGTGGGCTCTGGACCACCTCCCGAGGCGGAG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCCGCAGGACGGGGGCTaGTCGGCCTCCTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLPQDGG*SASSLL
Trigger: GAGCAAGGAGGAGGCCGACCAGCCCCCGTCCTGCGG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCCTCCAGGGATCCCCTaGGGCTGGTGTGGGGGCTGC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRPPGIP*GWCGGC
Trigger: GCAGCCCCCACACCAGCCTCAGGGGATCCCTGGAGG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGGAGCTGGTTCAGGGTaGGCGTTGCAGGGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSGAGSG*ALQGVL
Trigger: CAGCACCCCCTGCAACGCTCACCCTGAACCAGCTCC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACTCTGTGGCCATGCCTaGTCCGCCTCGGGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSLCGHA*SASGGG
Trigger: ACCACCTCCCGAGGCGGAGCAGGCATGGCCACAGAG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGGGGCCCTGTAGGGGCTaGAGGCCTCCAGGGATCCCC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRGPCRG*RPPGIP
Trigger: GGGGATCCCTGGAGGCCTGCAGCCCCTACAGGGCCC...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGCCCCTCTCCAGCTaGAGGAGCTGGGGTCCCACC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLGPLSS*RSWGPT
Trigger: GGTGGGACCCCAGCTCCTGCAGCTGGAGAGGGGCCC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACCAACTCCCCCGTGCTaGTCCCAGAGGTTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSPTPPC*SQRLAG
Trigger: CCCTGCCAACCTCTGGGAGCAGCACGGGGGAGTTGG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGGTGGGAGTTGGGGTTaGAGCAGGTGGGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSGGSWG*SRWGTP
Trigger: GGGAGTCCCCCACCTGCTGCAACCCCAACTCCCACC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCCGCAGGACGGGGGCTaGTCGGCCTCCTCCTTGCTC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRPQDGG*SASSLL
Trigger: GAGCAAGGAGGAGGCCGACCAGCCCCCGTCCTGCGG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGGAGCTGGTTCAGGGTaGGCGTTGCAGGGGGTGCTG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSGAGSG*ALQGVL
Trigger: CAGCACCCCCTGCAACGCTCACCCTGAACCAGCTCC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCTGGGGGCACAGGACTaGGACGGAGCTGGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLLGAQD*DGAGSG
Trigger: CCCTGAACCAGCTCCGTCTCAGTCCTGTGCCCCCAG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGGCCCCAGGGATCATTaGTTGTGGCCTCGCGGACCT +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSGPRDH*LWPRGP
Trigger: AGGTCCGCGAGGCCACAAGCAATGATCCCTGGGGCC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACTCTGTGGCCATGCCTaGTCCGCCTCGGGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSLCGHA*SASGGG
Trigger: ACCACCTCCCGAGGCGGAGCAGGCATGGCCACAGAG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGCTGCTCTGTGGCCATaGCTGCTCCGCCTCGGGAGG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLAALWP*LLRLGR
Trigger: CCTCCCGAGGCGGAGCAGGCATGGCCACAGAGCAGC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGGCTGCTCTGTGGCCATaGCTGCTCCGCCTCGGGAGG +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRAALWP*LLRLGR
Trigger: CCTCCCGAGGCGGAGCAGGCATGGCCACAGAGCAGC...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAACTCCTCCTCCCCGCTaGTCTGTGGCCATGCCTGCT +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSTPPPR*SVAMPA
Trigger: AGCAGGCATGGCCACAGAGCAGCGGGGAGGAGGAGT...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGGCTGGTGTGGGGGCTaGACCACCCCAAGGATCAGC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSGWCGG*TTPRIS
Trigger: GCTGATCCTTGGGGTGGTGCAGCCCCCACACCAGCC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAGGGCCCTGTAGGGGCTaGAGGCCTCCAGGGATCCCC +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKGPCRG*RPPGIP
Trigger: GGGGATCCCTGGAGGCCTGCAGCCCCTACAGGGCCC...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAGGGCCCCTCTCCAGCTaGAGGAGCTGGGGTCCCACC +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKGPLSS*RSWGPT
Trigger: GGTGGGACCCCAGCTCCTGCAGCTGGAGAGGGGCCC...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACCAACTCCCCCGTGCTaGTCCCAGAGGTTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSPTPPC*SQRLAG
Trigger: CCCTGCCAACCTCTGGGAGCAGCACGGGGGAGTTGG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGGTGGGAGTTGGGGTTaGAGCAGGTGGGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLGGSWG*SRWGTP
Trigger: GGGAGTCCCCCACCTGCTGCAACCCCAACTCCCACC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACTCCGCCTCGGGAGGTaGTCCAGAGCCCACGGCTGC +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKLRLGR*SRAHGC
Trigger: GCAGCCGTGGGCTCTGGACCACCTCCCGAGGCGGAG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAGGGCCAGCTGGAGCTaGACGTCATCCTCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSRASWS*TSSSGP
Trigger: CGGCCCTGAGGATGACGTCCAGCTCCAGCTGGCCCT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGCTGCTCCCAGAGGTTaGCAGGGCAGTGCGGAGTCG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSAAPRG*QGSAES
Trigger: CGACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGTGGTGGTGTGGGGCCTaGTCGGCTCACCAGCGAGTC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLWWCGA*SAHQRV
Trigger: GACTCGCTGGTGAGCCGACCAGGCCCCACACCACCA...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGGAAGCCTTGGATCCTaGTGGTGTGGGGCCTGGTCG +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSGSLGS*WCGAWS
Trigger: CGACCAGGCCCCACACCACCAGGATCCAAGGCTTCC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCATGGCGCTCCAGGAACTaGGGGCACAGGACTGAGACG +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSWRSRN*GHRTET
Trigger: CGTCTCAGTCCTGTGCCCCCAGTTCCTGGAGCGCCA...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAAGATGGGGGCCCACTaGCAGGAGCCCCACCATCAG +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLKMGAH*QEPHHQ
Trigger: CTGATGGTGGGGCTCCTGTCAGTGGGCCCCCATCTT...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGCTGGAAAGGATTGGTaGCAGAGGGGCCTGTGGGCG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSAGKDW*QRGLWA
Trigger: CGCCCACAGGCCCCTCTGTCACCAATCCTTTCCAGC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGCTGGAAAGGATTGGTaGCAGAGGGGCCTGTGGGCG +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLAGKDW*QRGLWA
Trigger: CGCCCACAGGCCCCTCTGTCACCAATCCTTTCCAGC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTCTGGGGGCACAGGACTaGGACGGAGCTGGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTLGAQD*DGAGSG
Trigger: CCCTGAACCAGCTCCGTCTCAGTCCTGTGCCCCCAG...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGGCCCCAGGGATCATTaGTTGTGGCCTCGCGGACCT +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLGPRDH*LWPRGP
Trigger: AGGTCCGCGAGGCCACAAGCAATGATCCCTGGGGCC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAGCTGCTCTGTGGCCATaGCTGCTCCGCCTCGGGAGG +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKAALWP*LLRLGR
Trigger: CCTCCCGAGGCGGAGCAGGCATGGCCACAGAGCAGC...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGCTGGTGTGGGGGCTaGACCACCCCAAGGATCAGC +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTGWCGG*TTPRIS
Trigger: GCTGATCCTTGGGGTGGTGCAGCCCCCACACCAGCC...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGAAAGCCGGGGCAGGTaGCCAGGGGTCAGAAGATGG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSESRGR*PGVRRW
Trigger: CCATCTTCTGACCCCTGGGCACCTGCCCCGGCTTTC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATCCAACTCCCCCGTGCTaGTCCCAGAGGTTGGCAGGG +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDPTPPC*SQRLAG
Trigger: CCCTGCCAACCTCTGGGAGCAGCACGGGGGAGTTGG...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAAGCAGGCACCTCTCCTaGGAGCAACTCCAACTCCCC +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSSRHLS*EQLQLP
Trigger: GGGGAGTTGGAGTTGCTCGCAGGAGAGGTGCCTGCT...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACCCACTCATGTCGAATaGCCCAGGGCTGCGAGCAGG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSPTHVE*PRAASR
Trigger: CCTGCTCGCAGCCCTGGGGCATTCGACATGAGTGGG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGTGGGAGTTGGGGTTaGAGCAGGTGGGGGACTCCC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLGGSWG*SRWGTP
Trigger: GGGAGTCCCCCACCTGCTGCAACCCCAACTCCCACC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTAGGGCCAGCTGGAGCTaGACGTCATCCTCAGGGCCG +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTRASWS*TSSSGP
Trigger: CGGCCCTGAGGATGACGTCCAGCTCCAGCTGGCCCT...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCCAAGGATCAGCAGCTaGAGGGACAGCAGGTCCCCC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLPRISS*RDSRSP
Trigger: GGGGGACCTGCTGTCCCTCCAGCTGCTGATCCTTGG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACCAAGGATCAGCAGCTaGAGGGACAGCAGGTCCCCC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSPRISS*RDSRSP
Trigger: GGGGGACCTGCTGTCCCTCCAGCTGCTGATCCTTGG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCATCCAGCTGCAGGAGCTaGGGTCCCACCCCAAGGATC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSSSCRS*GPTPRI
Trigger: GATCCTTGGGGTGGGACCCCAGCTCCTGCAGCTGGA...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCTGCTCCCAGAGGTTaGCAGGGCAGTGCGGAGTCG +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTAAPRG*QGSAES
Trigger: CGACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGC...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTTGGTGGTGTGGGGCCTaGTCGGCTCACCAGCGAGTC +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTWWCGA*SAHQRV
Trigger: GACTCGCTGGTGAGCCGACCAGGCCCCACACCACCA...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGGAAGCCTTGGATCCTaGTGGTGTGGGGCCTGGTCG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSGSLGS*WCGAWS
Trigger: CGACCAGGCCCCACACCACCAGGATCCAAGGCTTCC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGTGGCGCTCCAGGAACTaGGGGCACAGGACTGAGACG +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLWRSRN*GHRTET
Trigger: CGTCTCAGTCCTGTGCCCCCAGTTCCTGGAGCGCCA...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGAAGATGGGGGCCCACTaGCAGGAGCCCCACCATCAG +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRKMGAH*QEPHHQ
Trigger: CTGATGGTGGGGCTCCTGTCAGTGGGCCCCCATCTT...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATAAGATGGGGGCCCACTaGCAGGAGCCCCACCATCAG +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDKMGAH*QEPHHQ
Trigger: CTGATGGTGGGGCTCCTGTCAGTGGGCCCCCATCTT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATGCTGGAAAGGATTGGTaGCAGAGGGGCCTGTGGGCG +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDAGKDW*QRGLWA
Trigger: CGCCCACAGGCCCCTCTGTCACCAATCCTTTCCAGC...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACTGGGGGCACAGGACTaGGACGGAGCTGGTTCAGGG +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKLGAQD*DGAGSG
Trigger: CCCTGAACCAGCTCCGTCTCAGTCCTGTGCCCCCAG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGGGCCCCAGGGATCATTaGTTGTGGCCTCGCGGACCT +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRGPRDH*LWPRGP
Trigger: AGGTCCGCGAGGCCACAAGCAATGATCCCTGGGGCC...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACTCTGTGGCCATGCCTaGTCCGCCTCGGGAGGTGGT +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKLCGHA*SASGGG
Trigger: ACCACCTCCCGAGGCGGAGCAGGCATGGCCACAGAG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATACTCCTCCTCCCCGCTaGTCTGTGGCCATGCCTGCT +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDTPPPR*SVAMPA
Trigger: AGCAGGCATGGCCACAGAGCAGCGGGGAGGAGGAGT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGACTCCTCCTCCCCGCTaGTCTGTGGCCATGCCTGCT +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLTPPPR*SVAMPA
Trigger: AGCAGGCATGGCCACAGAGCAGCGGGGAGGAGGAGT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAGGCTGGTGTGGGGGCTaGACCACCCCAAGGATCAGC +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKGWCGG*TTPRIS
Trigger: GCTGATCCTTGGGGTGGTGCAGCCCCCACACCAGCC...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAAAGCCGGGGCAGGTaGCCAGGGGTCAGAAGATGG +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTESRGR*PGVRRW
Trigger: CCATCTTCTGACCCCTGGGCACCTGCCCCGGCTTTC...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGAAAGCCGGGGCAGGTaGCCAGGGGTCAGAAGATGG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLESRGR*PGVRRW
Trigger: CCATCTTCTGACCCCTGGGCACCTGCCCCGGCTTTC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACAACTGCAGTGCCGTTaGTGCTGGGCTTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSQLQCR*CWALQV
Trigger: CACCTGCAAAGCCCAGCAGCAACGGCACTGCAGTTG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCCCACTCATGTCGAATaGCCCAGGGCTGCGAGCAGG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLPTHVE*PRAASR
Trigger: CCTGCTCGCAGCCCTGGGGCATTCGACATGAGTGGG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTCCCACTCATGTCGAATaGCCCAGGGCTGCGAGCAGG +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTPTHVE*PRAASR
Trigger: CCTGCTCGCAGCCCTGGGGCATTCGACATGAGTGGG...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGAGCGTTGCAGGGGGTaGTGGCTGGAAAGGATTGGT +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSERCRG*WLERIG
Trigger: ACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACTGCTGCAGTGCCGTTaGTGCTGGGCTTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSLLQCR*CWALQV
Trigger: CACCTGCAAAGCCCAGCAGCAACGGCACTGCAGCAG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAAAGCCCCCAACTGCTaGAGTGCCGTTGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLKAPNC*SAVAAG
Trigger: CCCAGCAGCAACGGCACTGCAGCAGTTGGGGGCTTT...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAATAGCCAGGGCCAGCTaGAGCTGCAACTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSIARAS*SCNSSS
Trigger: GGAGGAGGAGTTGCAGCTCCAGCTGGCCCTGGCTAT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCCAAGGATCAGCAGCTaGAGGGACAGCAGGTCCCCC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLPRISS*RDSRSP
Trigger: GGGGGACCTGCTGTCCCTCCAGCTGCTGATCCTTGG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTCCAGCTGCAGGAGCTaGGGTCCCACCCCAAGGATC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRSSCRS*GPTPRI
Trigger: GATCCTTGGGGTGGGACCCCAGCTCCTGCAGCTGGA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTCCAGCTGCAGGAGCTaGGGTCCCACCCCAAGGATC +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDSSCRS*GPTPRI
Trigger: GATCCTTGGGGTGGGACCCCAGCTCCTGCAGCTGGA...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACAGTGCCGTTGCTGCTaGGCTTTGCAGGTGAGCCTC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSQCRCC*ALQVSL
Trigger: GAGGCTCACCTGCAAAGCCCAGCAGCAACGGCACTG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAATGGTGGTGTGGGGCCTaGTCGGCTCACCAGCGAGTC +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKWWCGA*SAHQRV
Trigger: GACTCGCTGGTGAGCCGACCAGGCCCCACACCACCA...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGAAGCCTTGGATCCTaGTGGTGTGGGGCCTGGTCG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLGSLGS*WCGAWS
Trigger: CGACCAGGCCCCACACCACCAGGATCCAAGGCTTCC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGCAGGGGGTGCTGGCTaGAAAGGATTGGTGACAGAG +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSAGGAG*KGLVTE
Trigger: CTCTGTCACCAATCCTTTCCAGCCAGCACCCCCTGC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACGTTGCAGGGGGTGCTaGCTGGAAAGGATTGGTGAC +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSRCRGC*LERIGD
Trigger: GTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTGGCGCTCCAGGAACTaGGGGCACAGGACTGAGACG +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDWRSRN*GHRTET
Trigger: CGTCTCAGTCCTGTGCCCCCAGTTCCTGGAGCGCCA...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAGAGATGTAGGTGGGTaGCGCTCCAGGAACTGGGGG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSRDVGG*RSRNWG
Trigger: CCCCCAGTTCCTGGAGCGCCACCCACCTACATCTCT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCATCTTGCCGTGGTCATTaGGCCGCTTCCAGATCATGC +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSSCRGH*AASRSC
Trigger: GCATGATCTGGAAGCGGCTCAATGACCACGGCAAGA...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAGCAAAGCCACCAGCTaGTTGGCCTTCTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLSKATS*LAFSRT
Trigger: TGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTTTGCT...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGGCCGTGGCAGTCTGTaGCAGCTTCTCCTTGGTCTT +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSGRGSL*QLLLGL
Trigger: AAGACCAAGGAGAAGCTGGCACAGACTGCCACGGCC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGAGATGACTCCTCCTTaGCCCCAGTCTCCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSEMTPP*PQSPSC
Trigger: GCAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGAGATGACTCCTCCTTaGCCCCAGTCTCCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLEMTPP*PQSPSC
Trigger: GCAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTCTGCAGTGCCGTTGCTaGTGGGCTTTGCAGGTGAGC +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTLQCRC*WALQVS
Trigger: GCTCACCTGCAAAGCCCAGCAGCAACGGCACTGCAG...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCTGCAGTGCCGTTGCTaGTGGGCTTTGCAGGTGAGC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLLQCRC*WALQVS
Trigger: GCTCACCTGCAAAGCCCAGCAGCAACGGCACTGCAG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGAGCAGGCACCTCTCCTaGGAGCAACTCCAACTCCCC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLSRHLS*EQLQLP
Trigger: GGGGAGTTGGAGTTGCTCGCAGGAGAGGTGCCTGCT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATAGCAGGCACCTCTCCTaGGAGCAACTCCAACTCCCC +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDSRHLS*EQLQLP
Trigger: GGGGAGTTGGAGTTGCTCGCAGGAGAGGTGCCTGCT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGAGCGTTGCAGGGGGTaGTGGCTGGAAAGGATTGGT +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSERCRG*WLERIG
Trigger: ACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACATGAGGGAGCTGGATaGGCCCCAGGGATCATTGCT +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSHEGAG*APGIIA
Trigger: AGCAATGATCCCTGGGGCCCATCCAGCTCCCTCATG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTATAGCCAGGGCCAGCTaGAGCTGCAACTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTIARAS*SCNSSS
Trigger: GGAGGAGGAGTTGCAGCTCCAGCTGGCCCTGGCTAT...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGATAGCCAGGGCCAGCTaGAGCTGCAACTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLIARAS*SCNSSS
Trigger: GGAGGAGGAGTTGCAGCTCCAGCTGGCCCTGGCTAT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCAGTGCCGTTGCTGCTaGGCTTTGCAGGTGAGCCTC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRQCRCC*ALQVSL
Trigger: GAGGCTCACCTGCAAAGCCCAGCAGCAACGGCACTG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAATGGGTTGGAAGCCTTaGATCCTGGTGGTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSMGWKP*ILVVWG
Trigger: GCCCCACACCACCAGGATCCAAGGCTTCCAACCCAT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCGTTGCAGGGGGTGCTaGCTGGAAAGGATTGGTGAC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLRCRGC*LERIGD
Trigger: GTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGGGACTGAGACGGAGCTaGTTCAGGGTGAGCGTTGCA +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLGLRRS*FRVSVA
Trigger: TGCAACGCTCACCCTGAACCAGCTCCGTCTCAGTCC...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTAGAGATGTAGGTGGGTaGCGCTCCAGGAACTGGGGG +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTRDVGG*RSRNWG
Trigger: CCCCCAGTTCCTGGAGCGCCACCCACCTACATCTCT...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAGAGGAGAGATGTAGGTaGGTGGCGCTCCAGGAACTG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSEERCR*VALQEL
Trigger: CAGTTCCTGGAGCGCCACCCACCTACATCTCTCCTC...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTGGCCTCGCGGACCTTaGTCTCAGCCTCTGAGTAGT +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDWPRGP*SQPLSS
Trigger: ACTACTCAGAGGCTGAGATCAAGGTCCGCGAGGCCA...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTGGCCTCGCGGACCTTaGTCTCAGCCTCTGAGTAGT +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRWPRGP*SQPLSS
Trigger: ACTACTCAGAGGCTGAGATCAAGGTCCGCGAGGCCA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAGAGTCGGTCGAAGTCTaGGAACTCATCAGGCTCTGT +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSESVEV*ELIRLC
Trigger: ACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTC...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGAGCAAAGCCACCAGCTaGTTGGCCTTCTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLSKATS*LAFSRT
Trigger: TGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTTTGCT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCATCCTCTATTGCCATCTaGAGCCTCAGGTCATCCCCA +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSSSIAI*SLRSSP
Trigger: TGGGGATGACCTGAGGCTGCAGATGGCAATAGAGGA...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAGATGACTCCTCCTTaGCCCCAGTCTCCCTCTTGC +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTEMTPP*PQSPSC
Trigger: GCAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTC...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCAACTGCAGTGCCGTTaGTGCTGGGCTTTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRQLQCR*CWALQV
Trigger: CACCTGCAAAGCCCAGCAGCAACGGCACTGCAGTTG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAGCGTTGCAGGGGGTaGTGGCTGGAAAGGATTGGT +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTERCRG*WLERIG
Trigger: ACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTC...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACCCCAACTGCTGCAGTaGCGTTGCTGCTGGGCTTTG +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKPQLLQ*RCCWAL
Trigger: CAAAGCCCAGCAGCAACGGCACTGCAGCAGTTGGGG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGGTCAAAGCCCCCAACTaGTGCAGTGCCGTTGCTGCT +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRVKAPN*CSAVAA
Trigger: AGCAGCAACGGCACTGCAGCAGTTGGGGGCTTTGAC...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCATGAGGGAGCTGGATaGGCCCCAGGGATCATTGCT +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLHEGAG*APGIIA
Trigger: AGCAATGATCCCTGGGGCCCATCCAGCTCCCTCATG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGATGGGTTGGAAGCCTTaGATCCTGGTGGTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRMGWKP*ILVVWG
Trigger: GCCCCACACCACCAGGATCCAAGGCTTCCAACCCAT...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATATGGGTTGGAAGCCTTaGATCCTGGTGGTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDMGWKP*ILVVWG
Trigger: GCCCCACACCACCAGGATCCAAGGCTTCCAACCCAT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGCAGGGGGTGCTGGCTaGAAAGGATTGGTGACAGAG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLAGGAG*KGLVTE
Trigger: CTCTGTCACCAATCCTTTCCAGCCAGCACCCCCTGC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCGTTGCAGGGGGTGCTaGCTGGAAAGGATTGGTGAC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRRCRGC*LERIGD
Trigger: GTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGACTGAGACGGAGCTaGTTCAGGGTGAGCGTTGCA +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLGLRRS*FRVSVA
Trigger: TGCAACGCTCACCCTGAACCAGCTCCGTCTCAGTCC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGAGGAGAGATGTAGGTaGGTGGCGCTCCAGGAACTG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLEERCR*VALQEL
Trigger: CAGTTCCTGGAGCGCCACCCACCTACATCTCTCCTC...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGGAGGAGAGATGTAGGTaGGTGGCGCTCCAGGAACTG +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRREERCR*VALQEL
Trigger: CAGTTCCTGGAGCGCCACCCACCTACATCTCTCCTC...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGTCTTGCCGTGGTCATTaGGCCGCTTCCAGATCATGC +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLSCRGH*AASRSC
Trigger: GCATGATCTGGAAGCGGCTCAATGACCACGGCAAGA...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTCTTGCCGTGGTCATTaGGCCGCTTCCAGATCATGC +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRSCRGH*AASRSC
Trigger: GCATGATCTGGAAGCGGCTCAATGACCACGGCAAGA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCATCACACCCTGGTCCTTaGCATCACGGTCCACATACT +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSSHPGP*HHGPHT
Trigger: AGTATGTGGACCGTGATGGCAAGGACCAGGGTGTGA...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAAGCAAAGCCACCAGCTaGTTGGCCTTCTCCCGCACA +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKSKATS*LAFSRT
Trigger: TGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTTTGCT...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAGGCCGTGGCAGTCTGTaGCAGCTTCTCCTTGGTCTT +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKGRGSL*QLLLGL
Trigger: AAGACCAAGGAGAAGCTGGCACAGACTGCCACGGCC...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACATGAGGGAGCTGGATaGGCCCCAGGGATCATTGCT +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKHEGAG*APGIIA
Trigger: AGCAATGATCCCTGGGGCCCATCCAGCTCCCTCATG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGAAGCCACCAGCTGCTTaGCCTTCTCCCGCACATTCA +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRKPPAA*PSPAHS
Trigger: TGAATGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTT...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGAAGCCACCAGCTGCTTaGCCTTCTCCCGCACATTCA +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLKPPAA*PSPAHS
Trigger: TGAATGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAACTAAGGGCCAGCTaGAGCTGGACGTCATCCTCA +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSKLRAS*SWTSSS
Trigger: TGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGTCCGCTTGGAAGGAATaGGTTGGAAGCCTTGGATCC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLSAWKE*VGSLGS
Trigger: GGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGA...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAGCAGGGGGTGCTGGCTaGAAAGGATTGGTGACAGAG +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKAGGAG*KGLVTE
Trigger: CTCTGTCACCAATCCTTTCCAGCCAGCACCCCCTGC...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
3UTR CAA 72 bp GGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTaGGGGGTTGTCATGAGTTTAGAGGGAGGTGGAATG +
Preference number: 4 (lower is better)
Translates to: GVPRERGGSNTD*GVVMSLEGGGM
Trigger: CATTCCACCTCCCTCTAAACTCATGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACCACAACATTGTAGGTaGGGTCAGCAATCTCTGACA +
Preference number: 4 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSPQHCR*GQQSLT
Trigger: TGTCAGAGATTGCTGACCTCACCTACAATGTTGTGG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCATCAGCAAGATCCATaGGAGATGACTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLHQQDP*EMTPPC
Trigger: GCAAGGAGGAGTCATCTCTCATGGATCTTGCTGATG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATGAGTCGGTCGAAGTCTaGGAACTCATCAGGCTCTGT +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDESVEV*ELIRLC
Trigger: ACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTC...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTTCACACCCTGGTCCTTaGCATCACGGTCCACATACT +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTSHPGP*HHGPHT
Trigger: AGTATGTGGACCGTGATGGCAAGGACCAGGGTGTGA...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTCACACCCTGGTCCTTaGCATCACGGTCCACATACT +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRSHPGP*HHGPHT
Trigger: AGTATGTGGACCGTGATGGCAAGGACCAGGGTGTGA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACGCTCTTCCTTATCGTaGTCCTCTCGGCTCAAACTA +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSRSSLS*SSRLKL
Trigger: TAGTTTGAGCCGAGAGGAGCACGATAAGGAAGAGCG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTTCCTCTATTGCCATCTaGAGCCTCAGGTCATCCCCA +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTSSIAI*SLRSSP
Trigger: TGGGGATGACCTGAGGCTGCAGATGGCAATAGAGGA...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTCCTCTATTGCCATCTaGAGCCTCAGGTCATCCCCA +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDSSIAI*SLRSSP
Trigger: TGGGGATGACCTGAGGCTGCAGATGGCAATAGAGGA...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCCCCAGTCTCCCTCTTaGTCTCCTCTATTGCCATCT +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRPQSPS*SPLLPS
Trigger: AGATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCCCCAGTCTCCCTCTTaGTCTCCTCTATTGCCATCT +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLPQSPS*SPLLPS
Trigger: AGATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTAAACTAAGGGCCAGCTaGAGCTGGACGTCATCCTCA +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTKLRAS*SWTSSS
Trigger: TGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTT...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCATTGGAAGGAATGGGTTaGAAGCCTTGGATCCTGGTG +
Preference number: 4 (lower is better)
Translates to: AKIITKDSPGVPRERGGSLEGMG*KPWILV
Trigger: CACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAA...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTCCGCTTGGAAGGAATaGGTTGGAAGCCTTGGATCC +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDSAWKE*VGSLGS
Trigger: GGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGA...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCCACAACATTGTAGGTaGGGTCAGCAATCTCTGACA +
Preference number: 4 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLPQHCR*GQQSLT
Trigger: TGTCAGAGATTGCTGACCTCACCTACAATGTTGTGG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTCATCAGCAAGATCCATaGGAGATGACTCCTCCTTGC +
Preference number: 4 (lower is better)
Translates to: IITKDSPGVPRERGGSNTHQQDP*EMTPPC
Trigger: GCAAGGAGGAGTCATCTCTCATGGATCTTGCTGATG...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACCCCAGTCTCCCTCTTaGTCTCCTCTATTGCCATCT +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKPQSPS*SPLLPS
Trigger: AGATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAAAACTAAGGGCCAGCTaGAGCTGGACGTCATCCTCA +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKKLRAS*SWTSSS
Trigger: TGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTT...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGTTGGAAGGAATGGGTTaGAAGCCTTGGATCCTGGTG +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLLEGMG*KPWILV
Trigger: CACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAA...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGAAGGAATGGGTTaGAAGCCTTGGATCCTGGTG +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDLEGMG*KPWILV
Trigger: CACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAA...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCTTGATCTCAGCCTCTaGGTAGTTGTGGACGATATT +
Preference number: 4 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLLDLSL*VVVDDI
Trigger: AATATCGTCCACAACTACTCAGAGGCTGAGATCAAG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTTGATCTCAGCCTCTaGGTAGTTGTGGACGATATT +
Preference number: 4 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRLDLSL*VVVDDI
Trigger: AATATCGTCCACAACTACTCAGAGGCTGAGATCAAG...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR TCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACTTGATCTCAGCCTCTaGGTAGTTGTGGACGATATT +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKLDLSL*VVVDDI
Trigger: AATATCGTCCACAACTACTCAGAGGCTGAGATCAAG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATCATACATGTTCTCTTTaGACTGTTGTGATACACGCT +
Preference number: 4 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDHTCSL*TVVIHA
Trigger: AGCGTGTATCACAACAGTGCAAAGAGAACATGTATG...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR GCA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACATACATGTTCTCTTTaGACTGTTGTGATACACGCT +
Preference number: 4 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKHTCSL*TVVIHA
Trigger: AGCGTGTATCACAACAGTGCAAAGAGAACATGTATG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 90 bp CCCACTCATGTCGAATGCCCCAGGGCTGCGAGCAGGCACCTCTCCTaGGAGCAACTCCAACTCCCCCGTGCTGCTCCCAGAGGTTGGCAG +
Preference number: 5 (lower is better)
Translates to: PTHVECPRAASRHLS*EQLQLPRAAPRGWQ
Trigger: CTGCCAACCTCTGGGAGCAGCACGGGGGAGTTGGAGTTGCTCGCAGGAGAGGTGCCTGCTCGCAGCCCTGGGGCATTCGACATGAGTGGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 90 bp TCCTTATCGTGCTCCTCTCGGCTCAAACTAAGGGCCAGCTGGAGCTaGACGTCATCCTCAGGGCCGCAGGACGGGGGCTGGTCGGCCTCC +
Preference number: 5 (lower is better)
Translates to: SLSCSSRLKLRASWS*TSSSGPQDGGWSAS
Trigger: GGAGGCCGACCAGCCCCCGTCCTGCGGCCCTGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTTGAGCCGAGAGGAGCACGATAAGGA
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 90 bp CACAGGACTGAGACGGAGCTGGTTCAGGGTGAGCGTTGCAGGGGGTaGTGGCTGGAAAGGATTGGTGACAGAGGGGCCTGTGGGCGGAGC +
Preference number: 5 (lower is better)
Translates to: HRTETELVQGERCRG*WLERIGDRGACGRS
Trigger: GCTCCGCCCACAGGCCCCTCTGTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTCACCCTGAACCAGCTCCGTCTCAGTCCTGTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 90 bp CGCTCTTCCTTATCGTGCTCCTCTCGGCTCAAACTAAGGGCCAGCTaGAGCTGGACGTCATCCTCAGGGCCGCAGGACGGGGGCTGGTCG +
Preference number: 5 (lower is better)
Translates to: RSSLSCSSRLKLRAS*SWTSSSGPQDGGWS
Trigger: CGACCAGCCCCCGTCCTGCGGCCCTGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTTGAGCCGAGAGGAGCACGATAAGGAAGAGCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 90 bp GGGCGGAGCTCCGCTTGGAAGGAATGGGTTGGAAGCCTTGGATCCTaGTGGTGTGGGGCCTGGTCGGCTCACCAGCGAGTCCAGATCCAC +
Preference number: 5 (lower is better)
Translates to: GRSSAWKEWVGSLGS*WCGAWSAHQRVQIH
Trigger: GTGGATCTGGACTCGCTGGTGAGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 90 bp ATTGGTGACAGAGGGGCCTGTGGGCGGAGCTCCGCTTGGAAGGAATaGGTTGGAAGCCTTGGATCCTGGTGGTGTGGGGCCTGGTCGGCT +
Preference number: 5 (lower is better)
Translates to: IGDRGACGRSSAWKE*VGSLGSWWCGAWSA
Trigger: AGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCCCTCTGTCACCAAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 90 bp CGGAGCTCCGCTTGGAAGGAATGGGTTGGAAGCCTTGGATCCTGGTaGTGTGGGGCCTGGTCGGCTCACCAGCGAGTCCAGATCCACAAG +
Preference number: 5 (lower is better)
Translates to: RSSAWKEWVGSLGSW*CGAWSAHQRVQIHK
Trigger: CTTGTGGATCTGGACTCGCTGGTGAGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 90 bp CTGGAAAGGATTGGTGACAGAGGGGCCTGTGGGCGGAGCTCCGCTTaGAAGGAATGGGTTGGAAGCCTTGGATCCTGGTGGTGTGGGGCC +
Preference number: 5 (lower is better)
Translates to: LERIGDRGACGRSSA*KEWVGSLGSWWCGA
Trigger: GGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCCCTCTGTCACCAATCCTTTCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS TCA 90 bp GCTGCTCCCAGAGGTTGGCAGGGCAGTGCGGAGTCGGTCGAAGTCTaGGAACTCATCAGGCTCTGTGTCAAAGCCCCCAACTGCAGTGCC +
Preference number: 5 (lower is better)
Translates to: AAPRGWQGSAESVEV*ELIRLCVKAPNCSA
Trigger: GGCACTGCAGTTGGGGGCTTTGACACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
CDS TCA 90 bp GCTGCTCCCAGAGGTTGGCAGGGCAGTGCGGAGTCGGTCGAAGTCTaGGAACTCATCAGGCTCTGTGTCAAAGCCCCCAACTGCTGCAGT +
Preference number: 5 (lower is better)
Translates to: AAPRGWQGSAESVEV*ELIRLCVKAPNCCS
Trigger: ACTGCAGCAGTTGGGGGCTTTGACACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS GCA 90 bp GCAACTCCAACTCCCCCGTGCTGCTCCCAGAGGTTGGCAGGGCAGTaGGGAGTCGGTCGAAGTCTGAGAACTCATCAGGCTCTGTGTCAA +
Preference number: 5 (lower is better)
Translates to: ATPTPPCCSQRLAGQ*GVGRSLRTHQALCQ
Trigger: TTGACACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGCACGGGGGAGTTGGAGTTGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAGCTTCTCCTTGGTCTaGAGCGCGTGGGCGCGCTCC +
Preference number: 5 (lower is better)
Translates to: AKIITKDSPGVPRERGGSSFSLV*SAWARS
Trigger: GGAGCGCGCCCACGCGCTCAAGACCAAGGAGAAGCT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAGCTTCTCCTTGGTCTaGAGCGCGTGGGCGCGCTCC +
Preference number: 5 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLSFSLV*SAWARS
Trigger: GGAGCGCGCCCACGCGCTCAAGACCAAGGAGAAGCT...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGTGGTCGGCCTCCTCCTaGCTCATAGCCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLWSASS*LIARAS
Trigger: GCTGGCCCTGGCTATGAGCAAGGAGGAGGCCGACCA...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCATGCTGCTCCCAGAGGTaGGCAGGGCAGTGCGGAGTC +
Preference number: 5 (lower is better)
Translates to: AKIITKDSPGVPRERGGSCCSQR*AGQCGV
Trigger: GACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGCA...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTGGTCGGCCTCCTCCTaGCTCATAGCCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRWSASS*LIARAS
Trigger: GCTGGCCCTGGCTATGAGCAAGGAGGAGGCCGACCA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCGTTGCTGCTGGGCTTaGCAGGTGAGCCTCCCCAGG +
Preference number: 5 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLRCCWA*QVSLPR
Trigger: CCTGGGGAGGCTCACCTGCAAAGCCCAGCAGCAACG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp AGTTGCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGTGCTGCTCCCAGAGGTaGGCAGGGCAGTGCGGAGTC +
Preference number: 5 (lower is better)
Translates to: SCQNHHQGFTRGAKGTRRCCSQR*AGQCGV
Trigger: GACTCCGCACTGCCCTGCCAACCTCTGGGAGCAGCA...CCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGCAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAAAGCTTCTCCTTGGTCTaGAGCGCGTGGGCGCGCTCC +
Preference number: 5 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKSFSLV*SAWARS
Trigger: GGAGCGCGCCCACGCGCTCAAGACCAAGGAGAAGCT...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGTGTGCCAGCTTCTCCTaGGTCTTGAGCGCGTGGGCG +
Preference number: 5 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLCASFS*VLSAWA
Trigger: CGCCCACGCGCTCAAGACCAAGGAGAAGCTGGCACA...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAATGGTCGGCCTCCTCCTaGCTCATAGCCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKWSASS*LIARAS
Trigger: GCTGGCCCTGGCTATGAGCAAGGAGGAGGCCGACCA...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCAAGAGATGACTCCTCCTaGCCCCCAGTCTCCCTCTTG +
Preference number: 5 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSRDDSS*PPVSLL
Trigger: CAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTCT...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACGTTGCTGCTGGGCTTaGCAGGTGAGCCTCCCCAGG +
Preference number: 5 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKRCCWA*QVSLPR
Trigger: CCTGGGGAGGCTCACCTGCAAAGCCCAGCAGCAACG...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp CAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAATGTGCCAGCTTCTCCTaGGTCTTGAGCGCGTGGGCG +
Preference number: 5 (lower is better)
Translates to: QNHHQGFTRGAKGTRRLKCASFS*VLSAWA
Trigger: CGCCCACGCGCTCAAGACCAAGGAGAAGCTGGCACA...TTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCCCCCAGTCTCCCTCTaGCTCTCCTCTATTGCCATC +
Preference number: 5 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLPPVSL*LSSIAI
Trigger: GATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGGG...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCACCCCCAGTCTCCCTCTaGCTCTCCTCTATTGCCATC +
Preference number: 5 (lower is better)
Translates to: AKIITKDSPGVPRERGGSPPVSL*LSSIAI
Trigger: GATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGGG...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp TCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGAGAGATGACTCCTCCTaGCCCCCAGTCTCCCTCTTG +
Preference number: 5 (lower is better)
Translates to: SSPRIHQGCQGNEEAQTLRDDSS*PPVSLL
Trigger: CAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTCT...CAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp GCCAAAATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAATGGGTTGGAAGCCTaGGATCCTGGTGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: AKIITKDSPGVPRERGGSNGLEA*DPGGVG
Trigger: CCCCACACCACCAGGATCCAAGGCTTCCAACCCATT...TGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGATTTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATGCTGGCTGGAAAGGATaGGTGACAGAGGGGCCTGTG +
Preference number: 5 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDAGWKG*VTEGPV
Trigger: CACAGGCCCCTCTGTCACCAATCCTTTCCAGCCAGC...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGCTGGCTGGAAAGGATaGGTGACAGAGGGGCCTGTG +
Preference number: 5 (lower is better)
Translates to: IITKDSPGVPRERGGSNTAGWKG*VTEGPV
Trigger: CACAGGCCCCTCTGTCACCAATCCTTTCCAGCCAGC...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTACTGCTGCAGTGCCGTaGCTGCTGGGCTTTGCAGGT +
Preference number: 5 (lower is better)
Translates to: IITKDSPGVPRERGGSNTTAAVP*LLGFAG
Trigger: ACCTGCAAAGCCCAGCAGCAACGGCACTGCAGCAGT...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp CACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGGGGGTTGTCACGCTCAGAGCCAGTCTaGATGAGGTACTCCATCAAC +
Preference number: 5 (lower is better)
Translates to: HQGCQGNEEAQTLIWGLSRSEPV*MRYSIN
Trigger: GTTGATGGAGTACCTCATCAAGACTGGCTCTGAGCG...TGACAACCCCCAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATAAAGCCACCAGCTGCTaGGCCTTCTCCCGCACATTC +
Preference number: 5 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDKATSC*AFSRTF
Trigger: GAATGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTTT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGAAAGCCACCAGCTGCTaGGCCTTCTCCCGCACATTC +
Preference number: 5 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLKATSC*AFSRTF
Trigger: GAATGTGCGGGAGAAGGCCAAGCAGCTGGTGGCTTT...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATCCCCCAGTCTCCCTCTaGCTCTCCTCTATTGCCATC +
Preference number: 5 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDPPVSL*LSSIAI
Trigger: GATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGGG...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATAATGGGTTGGAAGCCTaGGATCCTGGTGGTGTGGGG +
Preference number: 5 (lower is better)
Translates to: ITKDSPGVPRERGGSNTDNGLEA*DPGGVG
Trigger: CCCCACACCACCAGGATCCAAGGCTTCCAACCCATT...ATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTGATTTGCGCTCAGAGCCAGTCTaGATGAGGTACTCCATCAAC +
Preference number: 5 (lower is better)
Translates to: TKDSPGVPRERGGSNTDLRSEPV*MRYSIN
Trigger: GTTGATGGAGTACCTCATCAAGACTGGCTCTGAGCG...CAAATCAGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS-3UTR CAA 90 bp ATCATCACCAAGGATTCACCAGGGGTGCCAAGGGAACGAGGAGGCTCAAACACTCGCTCAGAGCCAGTCTaGATGAGGTACTCCATCAAC +
Preference number: 5 (lower is better)
Translates to: IITKDSPGVPRERGGSNTRSEPV*MRYSIN
Trigger: GTTGATGGAGTACCTCATCAAGACTGGCTCTGAGCG...AGTGTTTGAGCCTCCTCGTTCCCTTGGCACCCCTGGTGAATCCTTGGTGATGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CAA 90 bp CCCACGGCTGCTGAGGAGGCCGTGGCAGTCTGTGCCAGCTTCTCCTaGGTCTTGAGCGCGTGGGCGCGCTCCTCCCGGAGCCGATCCTCA +
Preference number: 6 (lower is better)
Translates to: PTAAEEAVAVCASFS*VLSAWARSSRSRSS
Trigger: TGAGGATCGGCTCCGGGAGGAGCGCGCCCACGCGCTCAAGACCAAGGAGAAGCTGGCACAGACTGCCACGGCCTCCTCAGCAGCCGTGGG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 72 bp TGCAACTCCTCCTCCCCGCTGCTCTGTGGCCATGCCTaGTCCGCCTCGGGAGGTGGTCCAGAGCCCACGGCT +
Preference number: 6 (lower is better)
Translates to: CNSSSPLLCGHA*SASGGGPEPTA
Trigger: AGCCGTGGGCTCTGGACCACCTCCCGAGGCGGAGCAGGCATGGCCACAGAGCAGCGGGGAGGAGGAGTTGCA
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CAA 72 bp GCTGAGGAGGCCGTGGCAGTCTGTGCCAGCTTCTCCTaGGTCTTGAGCGCGTGGGCGCGCTCCTCCCGGAGC +
Preference number: 6 (lower is better)
Translates to: AEEAVAVCASFS*VLSAWARSSRS
Trigger: GCTCCGGGAGGAGCGCGCCCACGCGCTCAAGACCAAGGAGAAGCTGGCACAGACTGCCACGGCCTCCTCAGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CAA 90 bp GGGCCTGTGGGCGGAGCTCCGCTTGGAAGGAATGGGTTGGAAGCCTaGGATCCTGGTGGTGTGGGGCCTGGTCGGCTCACCAGCGAGTCC +
Preference number: 6 (lower is better)
Translates to: GPVGGAPLGRNGLEA*DPGGVGPGRLTSES
Trigger: GGACTCGCTGGTGAGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 72 bp TGCTCCTCTCGGCTCAAACTAAGGGCCAGCTGGAGCTaGACGTCATCCTCAGGGCCGCAGGACGGGGGCTGG +
Preference number: 6 (lower is better)
Translates to: CSSRLKLRASWS*TSSSGPQDGGW
Trigger: CCAGCCCCCGTCCTGCGGCCCTGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTTGAGCCGAGAGGAGCA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CAA 90 bp GTGACAGAGGGGCCTGTGGGCGGAGCTCCGCTTGGAAGGAATGGGTaGGAAGCCTTGGATCCTGGTGGTGTGGGGCCTGGTCGGCTCACC +
Preference number: 6 (lower is better)
Translates to: VTEGPVGGAPLGRNG*EALDPGGVGPGRLT
Trigger: GGTGAGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCCCTCTGTCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 72 bp GGCCTGTGGGCGGAGCTCCGCTTGGAAGGAATGGGTTaGAAGCCTTGGATCCTGGTGGTGTGGGGCCTGGTC +
Preference number: 6 (lower is better)
Translates to: GLWAELRLEGMG*KPWILVVWGLV
Trigger: GACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 72 bp AGAGGGGCCTGTGGGCGGAGCTCCGCTTGGAAGGAATaGGTTGGAAGCCTTGGATCCTGGTGGTGTGGGGCC +
Preference number: 6 (lower is better)
Translates to: RGACGRSSAWKE*VGSLGSWWCGA
Trigger: GGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCCCTCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 72 bp TGGGTTGGAAGCCTTGGATCCTGGTGGTGTGGGGCCTaGTCGGCTCACCAGCGAGTCCAGATCCACAAGGGC +
Preference number: 6 (lower is better)
Translates to: WVGSLGSWWCGA*SAHQRVQIHKG
Trigger: GCCCTTGTGGATCTGGACTCGCTGGTGAGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CCA 72 bp GCGGAGCTCCGCTTGGAAGGAATGGGTTGGAAGCCTTaGATCCTGGTGGTGTGGGGCCTGGTCGGCTCACCA +
Preference number: 6 (lower is better)
Translates to: AELRLEGMGWKP*ILVVWGLVGSP
Trigger: TGGTGAGCCGACCAGGCCCCACACCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 72 bp GAGACGGAGCTGGTTCAGGGTGAGCGTTGCAGGGGGTaGTGGCTGGAAAGGATTGGTGACAGAGGGGCCTGT +
Preference number: 6 (lower is better)
Translates to: ETELVQGERCRG*WLERIGDRGAC
Trigger: ACAGGCCCCTCTGTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTCACCCTGAACCAGCTCCGTCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 72 bp CATCAGGCTCTGTGTCAAAGCCCCCAACTGCTGCAGTaGCGTTGCTGCTGGGCTTTGCAGGTGAGCCTCCCC +
Preference number: 6 (lower is better)
Translates to: HQALCQSPQLLQ*RCCWALQVSLP
Trigger: GGGGAGGCTCACCTGCAAAGCCCAGCAGCAACGGCACTGCAGCAGTTGGGGGCTTTGACACAGAGCCTGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000208634.2
CDS CCA 72 bp TTATCGTGCTCCTCTCGGCTCAAACTAAGGGCCAGCTaGAGCTGGACGTCATCCTCAGGGCCGCAGGACGGG +
Preference number: 6 (lower is better)
Translates to: LSCSSRLKLRAS*SWTSSSGPQDG
Trigger: CCCGTCCTGCGGCCCTGAGGATGACGTCCAGCTCCAGCTGGCCCTTAGTTTGAGCCGAGAGGAGCACGATAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 72 bp ACTCATCAGGCTCTGTGTCAAAGCCCCCAACTGCAGTaGCGTTGCTGCTGGGCTTTGCAGGTGAGCCTCCCC +
Preference number: 6 (lower is better)
Translates to: THQALCQSPQLQ*RCCWALQVSLP
Trigger: GGGGAGGCTCACCTGCAAAGCCCAGCAGCAACGGCACTGCAGTTGGGGGCTTTGACACAGAGCCTGATGAGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
CDS CCA 72 bp ATTGGTGACAGAGGGGCCTGTGGGCGGAGCTCCGCTTaGAAGGAATGGGTTGGAAGCCTTGGATCCTGGTGG +
Preference number: 6 (lower is better)
Translates to: IGDRGACGRSSA*KEWVGSLGSWW
Trigger: CCACCAGGATCCAAGGCTTCCAACCCATTCCTTCCAAGCGGAGCTCCGCCCACAGGCCCCTCTGTCACCAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS GCA 72 bp CACAGGACTGAGACGGAGCTGGTTCAGGGTGAGCGTTaGAGGGGGTGCTGGCTGGAAAGGATTGGTGACAGA +
Preference number: 6 (lower is better)
Translates to: HRTETELVQGER*RGCWLERIGDR
Trigger: TCTGTCACCAATCCTTTCCAGCCAGCACCCCCTGCAACGCTCACCCTGAACCAGCTCCGTCTCAGTCCTGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS TCA 72 bp AGAGGTTGGCAGGGCAGTGCGGAGTCGGTCGAAGTCTaGGAACTCATCAGGCTCTGTGTCAAAGCCCCCAAC +
Preference number: 6 (lower is better)
Translates to: RGWQGSAESVEV*ELIRLCVKAPN
Trigger: GTTGGGGGCTTTGACACAGAGCCTGATGAGTTCTCAGACTTCGACCGACTCCGCACTGCCCTGCCAACCTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2
CDS CAA 90 bp GCAAGATCCATGAGAGATGACTCCTCCTTGCCCCCAGTCTCCCTCTaGCTCTCCTCTATTGCCATCTGCAGCCTCAGGTCATCCCCACGA +
Preference number: 6 (lower is better)
Translates to: ARSMRDDSSLPPVSL*LSSIAICSLRSSPR
Trigger: TCGTGGGGATGACCTGAGGCTGCAGATGGCAATAGAGGAGAGCAAGAGGGAGACTGGGGGCAAGGAGGAGTCATCTCTCATGGATCTTGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000045277.7
ENSMUST00000098845.10
ENSMUST00000208634.2