Pregenerated sensors for EPDR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000002808Ensembl transcript IDs: ENSMUST00000002885.8, ENSMUST00000220944.2, ENSMUST00000221014.2
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACCAGAGGCAGGGGGTGGTGTCACTGGGAGCTCTTGCTTCCCTGGTaGAGACAAGCAAGGGACTTTCTTTGTAAGGGGAGAACTGAACAA | + |
|
Preference number: 1 (lower is better) Translates to: TRGRGWCHWELLLPW*RQARDFLCKGRTEQ Trigger: TTGTTCAGTTCTCCCCTTACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR CCA 90 bp | GAAAGAATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTaGTGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGG | + |
|
Preference number: 1 (lower is better) Translates to: ERILKAHLIVTRGRG*CHWELLLPWCRQAR Trigger: CCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGATTCTTTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR GCA 90 bp | CCCACTAGAAAAGACATGAAGGTTCAGCAGAGCGGTCAGTACTCTTaGACACAGAGCAGCACACGGGACTCTTCATTTCATCTCACGTGT | + |
|
Preference number: 1 (lower is better) Translates to: PTRKDMKVQQSGQYS*TQSSTRDSSFHLTC Trigger: ACACGTGAGATGAAATGAAGAGTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCATGTCTTTTCTAGTGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR TCA 90 bp | CATAATGAGTATTGTGAGCAAGGCATGCCAAGGTGTAAGATGCAATaGATTCAGGCGAGGGAACAGCTCACAGAGGTCACATGTGAGCTG | + |
|
Preference number: 1 (lower is better) Translates to: HNEYCEQGMPRCKMQ*IQAREQLTEVTCEL Trigger: CAGCTCACATGTGACCTCTGTGAGCTGTTCCCTCGCCTGAATTCATTGCATCTTACACCTTGGCATGCCTTGCTCACAATACTCATTATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR GCA 90 bp | AATCAGGAAATCCCACACAGCATAATGAGTATTGTGAGCAAGGCATaGCAAGGTGTAAGATGCAATGAATTCAGGCGAGGGAACAGCTCA | + |
|
Preference number: 1 (lower is better) Translates to: NQEIPHSIMSIVSKA*QGVRCNEFRRGNSS Trigger: TGAGCTGTTCCCTCGCCTGAATTCATTGCATCTTACACCTTGGCATGCCTTGCTCACAATACTCATTATGCTGTGTGGGATTTCCTGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR-3UTR TCA 90 bp | ATGAAGGTTCAGCAGAGCGGTCAGTACTCTTGCACACAGAGCAGCACACGGGACGCAAACTCCTTGTGCTaGCCCCACCCCCGCCCTTTC | + |
|
Preference number: 2 (lower is better) Translates to: MKVQQSGQYSCTQSSTRDANSLC*PHPRPF Trigger: GAAAGGGCGGGGGTGGGGTCAGCACAAGGAGTTTGC...GTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCAT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR-3UTR TCA 90 bp | GCTGGTGAGCTCCTTTCTACAAATGTTAAGGGCACAGACTATGTGCCAGGCACTCACAGAGGTCACATGTaGGCTGACCTTGGAAGCATG | + |
|
Preference number: 2 (lower is better) Translates to: AGELLSTNVKGTDYVPGTHRGHM*ADLGSM Trigger: CATGCTTCCAAGGTCAGCTCACATGTGACCTCTGTG...AGTGCCTGGCACATAGTCTGTGCCCTTAACATTTGTAGAAAGGAGCTCACCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR-3UTR CCA 90 bp | TGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTAAGGGGTGCTCACAGAAAGGATaGCCCCTTTCCTTCTCAAAA | + |
|
Preference number: 2 (lower is better) Translates to: WELLLPWCRQARDFLCKGCSQKG*PLSFSK Trigger: TTTTGAGAAGGAAAGGGGCCATCCTTTCTGTGAGCA...CCCCTTACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR-3UTR GCA 90 bp | ATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTGGTGTCACTGGGAGATAAAAGTCTCACCCTaGAGAGGCAAACTCCTTGTG | + |
|
Preference number: 2 (lower is better) Translates to: ILKAHLIVTRGRGWCHWEIKVSP*RGKLLV Trigger: CACAAGGAGTTTGCCTCTGCAGGGTGAGACTTTTAT...CTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR-3UTR CCA 90 bp | ATGAAGGTTCAGCAGAGCGGTCAGTACTCTTGCACACAGAGCAGCACACGGGACAATATCTACATCCAGTaGGCCATGGCACAAAATTTA | + |
|
Preference number: 2 (lower is better) Translates to: MKVQQSGQYSCTQSSTRDNIYIQ*AMAQNL Trigger: TAAATTTTGTGCCATGGCCCACTGGATGTAGATATT...GTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR CCA 72 bp | GAGCAGCCGTCACTCATCTTCTCTGGCTGCGCTGCCTaGCATGTGCTTGGTGGGGTGAACACAGAGGGGTCC | + |
|
Preference number: 3 (lower is better) Translates to: EQPSLIFSGCAA*HVLGGVNTEGS Trigger: GGACCCCTCTGTGTTCACCCCACCAAGCACATGCCAGGCAGCGCAGCCAGAGAAGATGAGTGACGGCTGCTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| 3UTR CCA 72 bp | GGCAGGGGGTGGTGTCACTGGGAGCTCTTGCTTCCCTaGTGCAGACAAGCAAGGGACTTTCTTTGTAAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: GRGWCHWELLLP*CRQARDFLCKG Trigger: CCCCTTACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCTGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR GCA 72 bp | AGGGGGTGGTGTCACTGGGAGCTCTTGCTTCCCTGGTaGAGACAAGCAAGGGACTTTCTTTGTAAGGGGAGA | + |
|
Preference number: 3 (lower is better) Translates to: RGWCHWELLLPW*RQARDFLCKGR Trigger: TCTCCCCTTACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR GCA 72 bp | GGTGGGGTGAACACAGAGGGGTCCTTAATGCCTAGCTaGACATCAAAGAACCGCGTGGACATGACCACAGTG | + |
|
Preference number: 3 (lower is better) Translates to: GGVNTEGSLMPS*TSKNRVDMTTV Trigger: CACTGTGGTCATGTCCACGCGGTTCTTTGATGTGCAGCTAGGCATTAAGGACCCCTCTGTGTTCACCCCACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| 3UTR CCA 72 bp | CATCTTATAGTAACCAGAGGCAGGGGGTGGTGTCACTaGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGG | + |
|
Preference number: 3 (lower is better) Translates to: HLIVTRGRGWCH*ELLLPWCRQAR Trigger: CCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR CCA 72 bp | TTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTaGTGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGA | + |
|
Preference number: 3 (lower is better) Translates to: LKAHLIVTRGRG*CHWELLLPWCR Trigger: TCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR-3UTR CAA 90 bp | GCTGGTGAGCTCCTTTCTACAAATGTTAAGGGCACAGACTATGTGCCAGGCACTAGTAGCAGAGACTTCTaGGCCTTACTTGGGGGCCTC | + |
|
Preference number: 3 (lower is better) Translates to: AGELLSTNVKGTDYVPGTSSRDF*ALLGGL Trigger: GAGGCCCCCAAGTAAGGCCAAGAAGTCTCTGCTACT...AGTGCCTGGCACATAGTCTGTGCCCTTAACATTTGTAGAAAGGAGCTCACCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR TCA 72 bp | CAGAAAGGATGGCCCCTTTCCTTCTCAAAACAGAGCTaGGCAGCCACAGTCAGATGTACAAGCAAGCCCACA | + |
|
Preference number: 3 (lower is better) Translates to: QKGWPLSFSKQS*AATVRCTSKPT Trigger: TGTGGGCTTGCTTGTACATCTGACTGTGGCTGCTCAGCTCTGTTTTGAGAAGGAAAGGGGCCATCCTTTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR TCA 72 bp | AATTCAGGCGAGGGAACAGCTCACAGAGGTCACATGTaGGCTGACCTTGGAAGCATGAGCCGTAGTCATATA | + |
|
Preference number: 3 (lower is better) Translates to: NSGEGTAHRGHM*ADLGSMSRSHI Trigger: TATATGACTACGGCTCATGCTTCCAAGGTCAGCTCACATGTGACCTCTGTGAGCTGTTCCCTCGCCTGAATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR TCA 72 bp | TATTGTGAGCAAGGCATGCCAAGGTGTAAGATGCAATaGATTCAGGCGAGGGAACAGCTCACAGAGGTCACA | + |
|
Preference number: 3 (lower is better) Translates to: YCEQGMPRCKMQ*IQAREQLTEVT Trigger: TGTGACCTCTGTGAGCTGTTCCCTCGCCTGAATTCATTGCATCTTACACCTTGGCATGCCTTGCTCACAATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | AGGAGCAGCCGTCACTCATCTTCTCTGGCTGCGCTGCCTGGCATGTGCTTGGTGCACTGCTGGGGTGCCTaGCATGGCTGTGGGGTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: RSSRHSSSLAALPGMCLVHCWGA*HGCGVP Trigger: GGGAACCCCACAGCCATGCCAGGCACCCCAGCAGTG...CACCAAGCACATGCCAGGCAGCGCAGCCAGAGAAGATGAGTGACGGCTGCTCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| CDS-3UTR TCA 90 bp | AGGAGCAGCCGTCACTCATCTTCTCTGGCTGCGCTGCCTGGCATGTGCTTGGTGCCCGCACGCGCTGGTTaGGACCATCGTAGGACACCA | + |
|
Preference number: 4 (lower is better) Translates to: RSSRHSSSLAALPGMCLVPARAG*DHRRTP Trigger: TGGTGTCCTACGATGGTCTCAACCAGCGCGTGCGGG...CACCAAGCACATGCCAGGCAGCGCAGCCAGAGAAGATGAGTGACGGCTGCTCCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| CDS-3UTR CCA 90 bp | ATGAAGGTTCAGCAGAGCGGTCAGTACTCTTGCACACAGAGCAGCACACGGGACTGCCTGGCATGGCTGTaGGGTTCCCAGGGAGCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: MKVQQSGQYSCTQSSTRDCLAWL*GSQGAR Trigger: GCGGGCTCCCTGGGAACCCCACAGCCATGCCAGGCA...GTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | ATGAAGGTTCAGCAGAGCGGTCAGTACTCTTGCACACAGAGCAGCACACGGGACCACTGCTGGGGTGCCTaGCATGGCTGTGGGGTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: MKVQQSGQYSCTQSSTRDHCWGA*HGCGVP Trigger: GGGAACCCCACAGCCATGCCAGGCACCCCAGCAGTG...GTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | TGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTTGGCGTCCCTCCCACTaGTGGGGTGCCTGGCATGGC | + |
|
Preference number: 4 (lower is better) Translates to: CHWELLLPWCRQARDFLCWRPSH*WGAWHG Trigger: GCCATGCCAGGCACCCCAGCAGTGGGAGGGACGCCA...ACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | AAAGAACCGCGTGGACATGACCACAGTGTAGTTCCTGATGAAGGTCTCCTGGACTGCCTGGCATGGCTGTaGGGTTCCCAGGGAGCCCGC | + |
|
Preference number: 4 (lower is better) Translates to: KEPRGHDHSVVPDEGLLDCLAWL*GSQGAR Trigger: GCGGGCTCCCTGGGAACCCCACAGCCATGCCAGGCA...GTCCAGGAGACCTTCATCAGGAACTACACTGTGGTCATGTCCACGCGGTTCTTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| CDS-3UTR GCA 90 bp | ATCAAAGAACCGCGTGGACATGACCACAGTGTAGTTCCTGATGAAGGTCTCCTGTGGCGTCCCTCCCACTaGTGGGGTGCCTGGCATGGC | + |
|
Preference number: 4 (lower is better) Translates to: IKEPRGHDHSVVPDEGLLWRPSH*WGAWHG Trigger: GCCATGCCAGGCACCCCAGCAGTGGGAGGGACGCCA...CAGGAGACCTTCATCAGGAACTACACTGTGGTCATGTCCACGCGGTTCTTTGAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| CDS-3UTR CCA 90 bp | ATGAAGGTTCAGCAGAGCGGTCAGTACTCTTGCACACAGAGCAGCACACGGGACTGCTGGTACAGAACCTaGCGTCCCTCCCACTGCTGG | + |
|
Preference number: 4 (lower is better) Translates to: MKVQQSGQYSCTQSSTRDCWYRT*RPSHCW Trigger: CCAGCAGTGGGAGGGACGCCAGGTTCTGTACCAGCA...GTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR TCA 90 bp | TGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTCCCGCACGCGCTGGTTaGGACCATCGTAGGACACCA | + |
|
Preference number: 4 (lower is better) Translates to: CHWELLLPWCRQARDFLCPARAG*DHRRTP Trigger: TGGTGTCCTACGATGGTCTCAACCAGCGCGTGCGGG...ACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | ATCAAAGAACCGCGTGGACATGACCACAGTGTAGTTCCTGATGAAGGTCTCCTGCTCCCACTGCTGGGGTaGCTGGCATGGCTGTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: IKEPRGHDHSVVPDEGLLLPLLG*LAWLWG Trigger: ACCCCACAGCCATGCCAGGCACCCCAGCAGTGGGAG...CAGGAGACCTTCATCAGGAACTACACTGTGGTCATGTCCACGCGGTTCTTTGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221014.2 |
||
| CDS-3UTR GCA 90 bp | AAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTGGTGTCACTGGGAGCTCTTGCTTCTCTGGCTGCGCTaGCTGGCATGTGCTTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: KAHLIVTRGRGWCHWELLLLWLR*LACAWW Trigger: CCACCAAGCACATGCCAGGCAGCGCAGCCAGAGAAG...CAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR CAA 72 bp | GTAACCAGAGGCAGGGGGTGGTGTCACTGGGAGCTCTaGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VTRGRGWCHWEL*LPWCRQARDFL Trigger: AAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGTTAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | AAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTGGTGTCACTGGGAGCTCTTGTTGTGCCCGCTGCTCTaGTGGTACAGAACCTGGCGT | + |
|
Preference number: 4 (lower is better) Translates to: KAHLIVTRGRGWCHWELLLCPLL*WYRTWR Trigger: ACGCCAGGTTCTGTACCAGCAGAGCAGCGGGCACAA...CAAGAGCTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR TCA 90 bp | GCTGGTGAGCTCCTTTCTACAAATGTTAAGGGCACAGACTATGTGCCAGGCACTACCAGGATCTGCTCCTaGGGCCCTCCGATGGAGTAC | + |
|
Preference number: 4 (lower is better) Translates to: AGELLSTNVKGTDYVPGTTRICS*GPPMEY Trigger: GTACTCCATCGGAGGGCCTCAGGAGCAGATCCTGGT...AGTGCCTGGCACATAGTCTGTGCCCTTAACATTTGTAGAAAGGAGCTCACCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | ATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTGGTGTCACTGGGAGTGCCTGGCATGTGCTTaGTGGGGTGAACACAGAGGG | + |
|
Preference number: 4 (lower is better) Translates to: ILKAHLIVTRGRGWCHWECLACA*WGEHRG Trigger: CCCTCTGTGTTCACCCCACCAAGCACATGCCAGGCA...CTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | GCAGACAAGCAAGGGACTTTCTTTGTAAGGGGAGAACTGAACAAAAGCATTCTACTCCCACTGCTGGGGTaGCTGGCATGGCTGTGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ADKQGTFFVRGELNKSILLPLLG*LAWLWG Trigger: ACCCCACAGCCATGCCAGGCACCCCAGCAGTGGGAG...TAGAATGCTTTTGTTCAGTTCTCCCCTTACAAAGAAAGTCCCTTGCTTGTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | TCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTAAGGGGAGAACTGCTCATCTTCTCTGGCTaGGCTGCCTGGCATGTGCTT | + |
|
Preference number: 4 (lower is better) Translates to: SCFPGADKQGTFFVRGELLIFSG*AAWHVL Trigger: AAGCACATGCCAGGCAGCGCAGCCAGAGAAGATGAG...CAGTTCTCCCCTTACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | ATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGGTGGTGTCACTGGGAGGTCACTCATCTTCTCTaGCTGCGCTGCCTGGCATGT | + |
|
Preference number: 4 (lower is better) Translates to: ILKAHLIVTRGRGWCHWEVTHLL*LRCLAC Trigger: ACATGCCAGGCAGCGCAGCCAGAGAAGATGAGTGAC...CTCCCAGTGACACCACCCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR TCA 90 bp | ATGAAGGTTCAGCAGAGCGGTCAGTACTCTTGCACACAGAGCAGCACACGGGACGTGGCTTGTTCAATCTaGAACATCACTCCCTCCTTA | + |
|
Preference number: 4 (lower is better) Translates to: MKVQQSGQYSCTQSSTRDVACSI*NITPSL Trigger: TAAGGAGGGAGTGATGTTTCAGATTGAACAAGCCAC...GTCCCGTGTGCTGCTCTGTGTGCAAGAGTACTGACCGCTCTGCTGAACCTTCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR TCA 90 bp | TGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTCCTCCGATGGAGTACTaGTCTTCAAAGGTAGAATTC | + |
|
Preference number: 4 (lower is better) Translates to: CHWELLLPWCRQARDFLCPPMEY*SSKVEF Trigger: GAATTCTACCTTTGAAGATCAGTACTCCATCGGAGG...ACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | GCTGGTGAGCTCCTTTCTACAAATGTTAAGGGCACAGACTATGTGCCAGGCACTTCCTTAATGCCTAGCTaGACATCAAAGAACCGCGTG | + |
|
Preference number: 4 (lower is better) Translates to: AGELLSTNVKGTDYVPGTSLMPS*TSKNRV Trigger: CACGCGGTTCTTTGATGTGCAGCTAGGCATTAAGGA...AGTGCCTGGCACATAGTCTGTGCCCTTAACATTTGTAGAAAGGAGCTCACCAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | TGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTTCTTTGCACACTGTTTaGTGGCTTGTTCAATCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: CHWELLLPWCRQARDFLCSLHTV*WLVQSE Trigger: TTCAGATTGAACAAGCCACCAAACAGTGTGCAAAGA...ACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| 3UTR CAA 72 bp | GGAAGCATGAGCCGTAGTCATATAGACACAGTTGTGTaGAAAGAGTTTCAGGAAAGGAAAGGCAAGGGCTAC | + |
|
Preference number: 4 (lower is better) Translates to: GSMSRSHIDTVV*KEFQERKGKGY Trigger: GTAGCCCTTGCCTTTCCTTTCCTGAAACTCTTTCAACACAACTGTGTCTATATGACTACGGCTCATGCTTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | TTTAAGTCTAGAAAGAATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGCCTGAGGCCCTCCGATaGAGTACTGATCTTCAAAGG | + |
|
Preference number: 4 (lower is better) Translates to: FKSRKNLKGSSYSNQRQGPEALR*STDLQR Trigger: CCTTTGAAGATCAGTACTCCATCGGAGGGCCTCAGG...CCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGATTCTTTCTAGACTTAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | TTTAAGTCTAGAAAGAATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGCACCAAGGGGATCTTTaGACACTGTTTGGTGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: FKSRKNLKGSSYSNQRQGHQGDL*TLFGGL Trigger: CAAGCCACCAAACAGTGTGCAAAGATCCCCTTGGTG...CCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGATTCTTTCTAGACTTAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR GCA 90 bp | GCAGACAAGCAAGGGACTTTCTTTGTAAGGGGAGAACTGAACAAAAGCATTCTAAGTTTCATAGGATCTTaGTGTTCTTCTGTCAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: ADKQGTFFVRGELNKSILSFIGS*CSSVRP Trigger: TGGTCTGACAGAAGAACAGCAAGATCCTATGAAACT...TAGAATGCTTTTGTTCAGTTCTCCCCTTACAAAGAAAGTCCCTTGCTTGTCTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | TTTAAGTCTAGAAAGAATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGTCAAAGGTAGAATTCTaGGGAATGTCCAGAGGATCC | + |
|
Preference number: 4 (lower is better) Translates to: FKSRKNLKGSSYSNQRQGSKVEF*GMSRGS Trigger: GGATCCTCTGGACATTCCCCAGAATTCTACCTTTGA...CCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGATTCTTTCTAGACTTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CCA 90 bp | TTTAAGTCTAGAAAGAATCTTAAAGGCTCATCTTATAGTAACCAGAGGCAGGGGTTGCACACTGTTTGGTaGCTTGTTCAATCTGAAACA | + |
|
Preference number: 4 (lower is better) Translates to: FKSRKNLKGSSYSNQRQGLHTVW*LVQSET Trigger: TGTTTCAGATTGAACAAGCCACCAAACAGTGTGCAA...CCCCTGCCTCTGGTTACTATAAGATGAGCCTTTAAGATTCTTTCTAGACTTAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS TCA 90 bp | AGGGGATCAGCGCTTTCCTCTCGTCCAGCACCCGCACGCGCTGGTTaGGACCATCGTAGGACACCAGGGCGCGGTTGTTGTGCCCGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: RGSALSSRPAPARAG*DHRRTPGRGCCARC Trigger: GCAGCGGGCACAACAACCGCGCCCTGGTGTCCTACGATGGTCTCAACCAGCGCGTGCGGGTGCTGGACGAGAGGAAAGCGCTGATCCCCT 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002885.8 ENSMUST00000221014.2 |
||
| CDS-3UTR CAA 90 bp | TGTCACTGGGAGCTCTTGCTTCCCTGGTGCAGACAAGCAAGGGACTTTCTTTGTTATTCAAATAATCTCTaGCAGGGGATCAGCGCTTTC | + |
|
Preference number: 5 (lower is better) Translates to: CHWELLLPWCRQARDFLCYSNNL*QGISAF Trigger: GAAAGCGCTGATCCCCTGCAAGAGATTATTTGAATA...ACAAAGAAAGTCCCTTGCTTGTCTGCACCAGGGAAGCAAGAGCTCCCAGTGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS-3UTR CAA 90 bp | GCAGACAAGCAAGGGACTTTCTTTGTAAGGGGAGAACTGAACAAAAGCATTCTAAAGTTTCATAGGATCTaGCTGTTCTTCTGTCAGACC | + |
|
Preference number: 5 (lower is better) Translates to: ADKQGTFFVRGELNKSILKFHRI*LFFCQT Trigger: GGTCTGACAGAAGAACAGCAAGATCCTATGAAACTT...TAGAATGCTTTTGTTCAGTTCTCCCCTTACAAAGAAAGTCCCTTGCTTGTCTGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000002885.8 |
||
| CDS TCA 72 bp | GCGCTTTCCTCTCGTCCAGCACCCGCACGCGCTGGTTaGGACCATCGTAGGACACCAGGGCGCGGTTGTTGT | + |
|
Preference number: 6 (lower is better) Translates to: ALSSRPAPARAG*DHRRTPGRGCC Trigger: ACAACAACCGCGCCCTGGTGTCCTACGATGGTCTCAACCAGCGCGTGCGGGTGCTGGACGAGAGGAAAGCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002885.8 ENSMUST00000221014.2 |
||
| CDS GCA 72 bp | CATCGTAGGACACCAGGGCGCGGTTGTTGTGCCCGCTaGTCTGCTGGTACAGAACCTGGCGTCCCTCCCACT | + |
|
Preference number: 6 (lower is better) Translates to: HRRTPGRGCCAR*SAGTEPGVPPT Trigger: AGTGGGAGGGACGCCAGGTTCTGTACCAGCAGAGCAGCGGGCACAACAACCGCGCCCTGGTGTCCTACGATG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002885.8 ENSMUST00000221014.2 |
||
| CDS GCA 72 bp | GTCCAGAGGATCCCAGGATTCCACCAAGGGGATCTTTaGACACTGTTTGGTGGCTTGTTCAATCTGAAACAT | + |
|
Preference number: 6 (lower is better) Translates to: VQRIPGFHQGDL*TLFGGLFNLKH Trigger: ATGTTTCAGATTGAACAAGCCACCAAACAGTGTGCAAAGATCCCCTTGGTGGAATCCTGGGATCCTCTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002885.8 ENSMUST00000220944.2 |
||
| CDS GCA 72 bp | GGCTGTATAAACGCCGATCCAAGTTTCATAGGATCTTaGTGTTCTTCTGTCAGACCACTCCTGGACCAGGAT | + |
|
Preference number: 6 (lower is better) Translates to: GCINADPSFIGS*CSSVRPLLDQD Trigger: ATCCTGGTCCAGGAGTGGTCTGACAGAAGAACAGCAAGATCCTATGAAACTTGGATCGGCGTTTATACAGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000002885.8 ENSMUST00000220944.2 |
||
| CDS CAA 72 bp | TGTCCAGAGGATCCCAGGATTCCACCAAGGGGATCTTaGCACACTGTTTGGTGGCTTGTTCAATCTGAAACA | + |
|
Preference number: 6 (lower is better) Translates to: CPEDPRIPPRGS*HTVWWLVQSET Trigger: TGTTTCAGATTGAACAAGCCACCAAACAGTGTGCAAAGATCCCCTTGGTGGAATCCTGGGATCCTCTGGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000002885.8 ENSMUST00000220944.2 |
||