Pregenerated sensors for EOLA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045237Ensembl transcript IDs: ENSMUST00000053981.6
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CGCCACAGCATGAGGGATGTGTTTACTGCCATGCCCTTCATGAGGGCAGAGCAGCCGAGTCTCCTAGATTaGGATTTGGAGGTGCACACT | + |
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Preference number: 2 (lower is better) Translates to: RHSMRDVFTAMPFMRAEQPSLLD*DLEVHT Trigger: AGTGTGCACCTCCAAATCTCAATCTAGGAGACTCGG...CTGCTCTGCCCTCATGAAGGGCATGGCAGTAAACACATCCCTCATGCTGTGGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR-3UTR TCA 90 bp | AGTGAACCTCAGGCAAATATCATTTCCTGGGACGTTTCCTTTTCCCTAAAGGTCCTGCCATGCCCTTCATaGGGGCAGAGCAGGCTGGAA | + |
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Preference number: 2 (lower is better) Translates to: SEPQANIISWDVSFSLKVLPCPS*GQSRLE Trigger: TTCCAGCCTGCTCTGCCCTCATGAAGGGCATGGCAG...GACCTTTAGGGAAAAGGAAACGTCCCAGGAAATGATATTTGCCTGAGGTTCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR CAA 90 bp | TTCCTTTTCCCTAAAGGTCAAAGTTCTCAAGGCTCTGTAGTTCTGTaGGCAGCGCCACAGCATGAGGGATGTGTTTACTGCCATGCCCTT | + |
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Preference number: 2 (lower is better) Translates to: FLFPKGQSSQGSVVL*AAPQHEGCVYCHAL Trigger: AAGGGCATGGCAGTAAACACATCCCTCATGCTGTGGCGCTGCCAACAGAACTACAGAGCCTTGAGAACTTTGACCTTTAGGGAAAAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR-3UTR TCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTGGCAGCGCCACAGCATaGGGGATGTGTTTACTGCCA | + |
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Preference number: 2 (lower is better) Translates to: CNPENSRSKVNLRQISFPGSATA*GMCLLP Trigger: TGGCAGTAAACACATCCCTCATGCTGTGGCGCTGCC...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR-3UTR GCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTCCAGCTAGTGAGCTGTaGTCTGCAGGAGTGGATCCG | + |
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Preference number: 2 (lower is better) Translates to: CNPENSRSKVNLRQISFPPASEL*SAGVDP Trigger: CGGATCCACTCCTGCAGAGCACAGCTCACTAGCTGG...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR-3UTR CCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTGAGGGCAGAGCAGGCTaGAAACAGCACCCAGCTAGT | + |
|
Preference number: 2 (lower is better) Translates to: CNPENSRSKVNLRQISFPEGRAG*KQHPAS Trigger: ACTAGCTGGGTGCTGTTTCCAGCCTGCTCTGCCCTC...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR-3UTR CCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTACTCTGATGGTCTACTaGCAGAGCCATTCTTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: CNPENSRSKVNLRQISFPTLMVY*QSHSSV Trigger: AACTGAAGAATGGCTCTGCCAGTAGACCATCAGAGT...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR TCA 72 bp | CTGTGCTCTGCAGGAGTGGATCCGAGTCTCCTAGATTaGGATTTGGAGGTGCACACTCTGATGGTCTACTGG | + |
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Preference number: 3 (lower is better) Translates to: LCSAGVDPSLLD*DLEVHTLMVYW Trigger: CCAGTAGACCATCAGAGTGTGCACCTCCAAATCTCAATCTAGGAGACTCGGATCCACTCCTGCAGAGCACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR-3UTR CAA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTGGCTCTGTAGTTCTGTaGGCAGCGCCACAGCATGAG | + |
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Preference number: 3 (lower is better) Translates to: CNPENSRSKVNLRQISFPGSVVL*AAPQHE Trigger: CTCATGCTGTGGCGCTGCCAACAGAACTACAGAGCC...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR TCA 90 bp | CGCCACAGCATGAGGGATGTGTTTACTGCCATGCCCTTCATGAGGGCAGAGCAGAAGGTCTCTGGACACTaGAAAGTCTCTCCAATGTCA | + |
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Preference number: 4 (lower is better) Translates to: RHSMRDVFTAMPFMRAEQKVSGH*KVSPMS Trigger: TGACATTGGAGAGACTTTTCAGTGTCCAGAGACCTT...CTGCTCTGCCCTCATGAAGGGCATGGCAGTAAACACATCCCTCATGCTGTGGCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR CCA 90 bp | CGCCACAGCATGAGGGATGTGTTTACTGCCATGCCCTTCATGAGGGCAGAGCAGTGTGAGCAATGTGGATaGCAATGGTGTATTTCTGAA | + |
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Preference number: 4 (lower is better) Translates to: RHSMRDVFTAMPFMRAEQCEQCG*QWCISE Trigger: TTCAGAAATACACCATTGCCATCCACATTGCTCACA...CTGCTCTGCCCTCATGAAGGGCATGGCAGTAAACACATCCCTCATGCTGTGGCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| 3UTR CAA 72 bp | CCTAAAGGTCAAAGTTCTCAAGGCTCTGTAGTTCTGTaGGCAGCGCCACAGCATGAGGGATGTGTTTACTGC | + |
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Preference number: 4 (lower is better) Translates to: PKGQSSQGSVVL*AAPQHEGCVYC Trigger: GCAGTAAACACATCCCTCATGCTGTGGCGCTGCCAACAGAACTACAGAGCCTTGAGAACTTTGACCTTTAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR GCA 90 bp | AGTGAACCTCAGGCAAATATCATTTCCTGGGACGTTTCCTTTTCCCTAAAGGTCCAGCTATCACGCCTCTaGCGTACTTTTCTCCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: SEPQANIISWDVSFSLKVQLSRL*RTFLLP Trigger: AGGCAGGAGAAAAGTACGGCAGAGGCGTGATAGCTG...GACCTTTAGGGAAAAGGAAACGTCCCAGGAAATGATATTTGCCTGAGGTTCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR TCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTTCCCCAACCTCTCCATaGGCACTTCCTGCCATTCAT | + |
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Preference number: 4 (lower is better) Translates to: CNPENSRSKVNLRQISFPSPTSP*ALPAIH Trigger: ATGAATGGCAGGAAGTGCTCATGGAGAGGTTGGGGA...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR GCA 90 bp | AGTGAACCTCAGGCAAATATCATTTCCTGGGACGTTTCCTTTTCCCTAAAGGTCGTCAGGTACTTCAGCTaGAGATTGGTTAGCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: SEPQANIISWDVSFSLKVVRYFS*RLVSTA Trigger: AGCTGTGCTAACCAATCTGCAGCTGAAGTACCTGAC...GACCTTTAGGGAAAAGGAAACGTCCCAGGAAATGATATTTGCCTGAGGTTCACT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR TCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTTTGGTTAGCACAGCTTaGGTTTCCAGTTCCACAGCC | + |
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Preference number: 4 (lower is better) Translates to: CNPENSRSKVNLRQISFPLVSTA*VSSSTA Trigger: GGCTGTGGAACTGGAAACTCAAGCTGTGCTAACCAA...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR CCA 90 bp | AGTGAACCTCAGGCAAATATCATTTCCTGGGACGTTTCCTTTTCCCTAAAGGTCCAATGTGGATGGCAATaGTGTATTTCTGAACGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SEPQANIISWDVSFSLKVQCGWQ*CISERC Trigger: GCAGCGTTCAGAAATACACCATTGCCATCCACATTG...GACCTTTAGGGAAAAGGAAACGTCCCAGGAAATGATATTTGCCTGAGGTTCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS-3UTR CCA 90 bp | TGCAATCCAGAAAACAGCAGGAGTAAAGTGAACCTCAGGCAAATATCATTTCCTACTTCAGCTGCAGATTaGTTAGCACAGCTTGAGTTT | + |
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Preference number: 4 (lower is better) Translates to: CNPENSRSKVNLRQISFPTSAAD*LAQLEF Trigger: AAACTCAAGCTGTGCTAACCAATCTGCAGCTGAAGT...AGGAAATGATATTTGCCTGAGGTTCACTTTACTCCTGCTGTTTTCTGGATTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS TCA 90 bp | GCTATCACGCCTCTGCCGTACTTTTCTCCTGCCTGTAGTAAGGTCTaGATCTGTGTCCAGGTCATCCCCAACCTCTCCATGAGCACTTCC | + |
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Preference number: 5 (lower is better) Translates to: AITPLPYFSPACSKV*ICVQVIPNLSMSTS Trigger: GGAAGTGCTCATGGAGAGGTTGGGGATGACCTGGACACAGATTCAGACCTTACTACAGGCAGGAGAAAAGTACGGCAGAGGCGTGATAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS TCA 90 bp | GTTTCCAGTTCCACAGCCTCCTCAGCAGTTAAGGTCTCTGGACACTaGAAAGTCTCTCCAATGTCAATAAGTCCAGCTATCACGCCTCTG | + |
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Preference number: 5 (lower is better) Translates to: VSSSTASSAVKVSGH*KVSPMSISPAITPL Trigger: CAGAGGCGTGATAGCTGGACTTATTGACATTGGAGAGACTTTTCAGTGTCCAGAGACCTTAACTGCTGAGGAGGCTGTGGAACTGGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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| CDS TCA 72 bp | TCCACAGCCTCCTCAGCAGTTAAGGTCTCTGGACACTaGAAAGTCTCTCCAATGTCAATAAGTCCAGCTATC | + |
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Preference number: 6 (lower is better) Translates to: STASSAVKVSGH*KVSPMSISPAI Trigger: GATAGCTGGACTTATTGACATTGGAGAGACTTTTCAGTGTCCAGAGACCTTAACTGCTGAGGAGGCTGTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053981.6 |
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